Multiple sequence alignment - TraesCS1D01G322700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G322700 chr1D 100.000 3137 0 0 1 3137 415453310 415450174 0.000000e+00 5794.0
1 TraesCS1D01G322700 chr1D 94.981 259 11 1 629 885 415449205 415449463 3.770000e-109 405.0
2 TraesCS1D01G322700 chr6D 96.423 1901 53 10 629 2525 62674120 62676009 0.000000e+00 3120.0
3 TraesCS1D01G322700 chr6D 97.398 615 16 0 2523 3137 62679559 62680173 0.000000e+00 1048.0
4 TraesCS1D01G322700 chr6D 93.822 259 13 3 628 885 62681139 62680883 1.360000e-103 387.0
5 TraesCS1D01G322700 chr6D 75.556 180 40 4 125 302 446460989 446460812 5.570000e-13 86.1
6 TraesCS1D01G322700 chr6D 84.722 72 6 4 125 194 2692502 2692570 2.020000e-07 67.6
7 TraesCS1D01G322700 chr2D 95.613 1892 73 7 628 2513 568893582 568895469 0.000000e+00 3025.0
8 TraesCS1D01G322700 chr2D 94.231 260 12 1 629 885 568930506 568930247 8.150000e-106 394.0
9 TraesCS1D01G322700 chr2D 82.653 98 11 4 313 409 43800965 43800873 7.210000e-12 82.4
10 TraesCS1D01G322700 chr5B 91.615 1920 125 22 629 2525 690271370 690269464 0.000000e+00 2621.0
11 TraesCS1D01G322700 chr5B 95.935 615 24 1 2523 3136 690265586 690264972 0.000000e+00 996.0
12 TraesCS1D01G322700 chr5B 75.000 168 39 3 125 290 528522265 528522099 1.210000e-09 75.0
13 TraesCS1D01G322700 chr3D 94.166 1577 63 15 926 2492 477860 476303 0.000000e+00 2375.0
14 TraesCS1D01G322700 chr3D 96.569 612 21 0 2523 3134 441630 441019 0.000000e+00 1014.0
15 TraesCS1D01G322700 chr3D 73.469 196 45 7 125 316 120721734 120721542 2.020000e-07 67.6
16 TraesCS1D01G322700 chr3B 88.432 1945 151 46 622 2525 766094373 766092462 0.000000e+00 2278.0
17 TraesCS1D01G322700 chr3B 95.440 614 28 0 2523 3136 766067768 766067155 0.000000e+00 979.0
18 TraesCS1D01G322700 chr3B 78.378 111 24 0 221 331 787509194 787509084 4.340000e-09 73.1
19 TraesCS1D01G322700 chr7B 91.763 1639 110 15 902 2525 44930950 44929322 0.000000e+00 2255.0
20 TraesCS1D01G322700 chr7B 90.085 1654 124 29 883 2520 44932704 44931075 0.000000e+00 2109.0
21 TraesCS1D01G322700 chr7B 88.936 1636 137 30 903 2520 44927528 44925919 0.000000e+00 1978.0
22 TraesCS1D01G322700 chr7B 89.005 1628 136 34 903 2515 44925793 44924194 0.000000e+00 1975.0
23 TraesCS1D01G322700 chr7B 91.553 1101 80 11 905 1996 44924057 44922961 0.000000e+00 1506.0
24 TraesCS1D01G322700 chr7B 88.761 952 69 25 1562 2507 104051461 104052380 0.000000e+00 1131.0
25 TraesCS1D01G322700 chr7B 96.098 615 23 1 2523 3137 44891884 44891271 0.000000e+00 1002.0
26 TraesCS1D01G322700 chr7B 89.506 324 27 4 2204 2525 44931338 44931020 1.350000e-108 403.0
27 TraesCS1D01G322700 chr7B 87.390 341 32 7 2190 2525 44924467 44924133 6.350000e-102 381.0
28 TraesCS1D01G322700 chr7B 88.462 52 6 0 2474 2525 44925916 44925865 2.610000e-06 63.9
29 TraesCS1D01G322700 chr1B 89.794 921 83 7 1596 2514 136331628 136332539 0.000000e+00 1170.0
30 TraesCS1D01G322700 chr1B 94.608 612 33 0 2523 3134 136495682 136496293 0.000000e+00 948.0
31 TraesCS1D01G322700 chr7D 96.091 614 24 0 2523 3136 567752156 567752769 0.000000e+00 1002.0
32 TraesCS1D01G322700 chr7D 89.457 645 34 7 616 1259 567742742 567743353 0.000000e+00 784.0
33 TraesCS1D01G322700 chr7D 73.011 352 56 20 258 577 398951902 398951558 1.550000e-13 87.9
34 TraesCS1D01G322700 chr2B 95.942 616 23 2 2523 3136 794862689 794863304 0.000000e+00 998.0
35 TraesCS1D01G322700 chr2B 95.847 602 25 0 2523 3124 131099765 131100366 0.000000e+00 974.0
36 TraesCS1D01G322700 chr2B 93.822 259 13 3 629 885 131101171 131100914 1.360000e-103 387.0
37 TraesCS1D01G322700 chr2B 94.118 255 14 1 632 885 794864371 794864117 1.360000e-103 387.0
38 TraesCS1D01G322700 chr2B 86.080 352 33 6 2178 2525 131096018 131096357 6.390000e-97 364.0
39 TraesCS1D01G322700 chr5D 76.437 174 34 7 125 294 333410736 333410906 1.550000e-13 87.9
40 TraesCS1D01G322700 chr6A 78.906 128 25 2 290 417 499835153 499835278 5.570000e-13 86.1
41 TraesCS1D01G322700 chrUn 74.566 173 38 6 124 293 75850213 75850044 1.560000e-08 71.3
42 TraesCS1D01G322700 chrUn 74.566 173 38 6 124 293 284677334 284677165 1.560000e-08 71.3
43 TraesCS1D01G322700 chr3A 80.435 92 14 2 309 400 686806020 686806107 2.020000e-07 67.6
44 TraesCS1D01G322700 chr7A 88.000 50 6 0 106 155 119762296 119762345 3.380000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G322700 chr1D 415450174 415453310 3136 True 5794.0000 5794 100.0000 1 3137 1 chr1D.!!$R1 3136
1 TraesCS1D01G322700 chr6D 62674120 62680173 6053 False 2084.0000 3120 96.9105 629 3137 2 chr6D.!!$F2 2508
2 TraesCS1D01G322700 chr2D 568893582 568895469 1887 False 3025.0000 3025 95.6130 628 2513 1 chr2D.!!$F1 1885
3 TraesCS1D01G322700 chr5B 690264972 690271370 6398 True 1808.5000 2621 93.7750 629 3136 2 chr5B.!!$R2 2507
4 TraesCS1D01G322700 chr3D 476303 477860 1557 True 2375.0000 2375 94.1660 926 2492 1 chr3D.!!$R2 1566
5 TraesCS1D01G322700 chr3D 441019 441630 611 True 1014.0000 1014 96.5690 2523 3134 1 chr3D.!!$R1 611
6 TraesCS1D01G322700 chr3B 766092462 766094373 1911 True 2278.0000 2278 88.4320 622 2525 1 chr3B.!!$R2 1903
7 TraesCS1D01G322700 chr3B 766067155 766067768 613 True 979.0000 979 95.4400 2523 3136 1 chr3B.!!$R1 613
8 TraesCS1D01G322700 chr7B 44922961 44932704 9743 True 1333.8625 2255 89.5875 883 2525 8 chr7B.!!$R2 1642
9 TraesCS1D01G322700 chr7B 104051461 104052380 919 False 1131.0000 1131 88.7610 1562 2507 1 chr7B.!!$F1 945
10 TraesCS1D01G322700 chr7B 44891271 44891884 613 True 1002.0000 1002 96.0980 2523 3137 1 chr7B.!!$R1 614
11 TraesCS1D01G322700 chr1B 136331628 136332539 911 False 1170.0000 1170 89.7940 1596 2514 1 chr1B.!!$F1 918
12 TraesCS1D01G322700 chr1B 136495682 136496293 611 False 948.0000 948 94.6080 2523 3134 1 chr1B.!!$F2 611
13 TraesCS1D01G322700 chr7D 567752156 567752769 613 False 1002.0000 1002 96.0910 2523 3136 1 chr7D.!!$F2 613
14 TraesCS1D01G322700 chr7D 567742742 567743353 611 False 784.0000 784 89.4570 616 1259 1 chr7D.!!$F1 643
15 TraesCS1D01G322700 chr2B 794862689 794863304 615 False 998.0000 998 95.9420 2523 3136 1 chr2B.!!$F1 613
16 TraesCS1D01G322700 chr2B 131096018 131100366 4348 False 669.0000 974 90.9635 2178 3124 2 chr2B.!!$F2 946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 488 0.033503 TGAGTACTCCATGAGGCCGA 60.034 55.0 20.11 0.0 33.35 5.54 F
624 625 0.037447 GCACTGCCCCTCTTCTTCTT 59.963 55.0 0.00 0.0 0.00 2.52 F
2024 8941 0.403271 ATGGCTGAAGAGGTTGCTGT 59.597 50.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1661 1693 1.146774 TGTCCACCCATTCCACAACAT 59.853 47.619 0.0 0.0 0.0 2.71 R
2131 9051 3.002451 GCACTGCATCATCATCTTCACTC 59.998 47.826 0.0 0.0 0.0 3.51 R
2999 14317 1.337118 GAGAGGCAGATAGGGGAGTG 58.663 60.000 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 6.874278 ATACTGTATAATAGCATCTGCCCA 57.126 37.500 0.00 0.00 43.38 5.36
54 55 5.567037 ACTGTATAATAGCATCTGCCCAA 57.433 39.130 0.00 0.00 43.38 4.12
55 56 5.940617 ACTGTATAATAGCATCTGCCCAAA 58.059 37.500 0.00 0.00 43.38 3.28
56 57 6.364701 ACTGTATAATAGCATCTGCCCAAAA 58.635 36.000 0.00 0.00 43.38 2.44
57 58 6.833416 ACTGTATAATAGCATCTGCCCAAAAA 59.167 34.615 0.00 0.00 43.38 1.94
58 59 7.506938 ACTGTATAATAGCATCTGCCCAAAAAT 59.493 33.333 0.00 0.00 43.38 1.82
59 60 8.248904 TGTATAATAGCATCTGCCCAAAAATT 57.751 30.769 0.00 0.00 43.38 1.82
60 61 8.143193 TGTATAATAGCATCTGCCCAAAAATTG 58.857 33.333 0.00 0.00 43.38 2.32
61 62 5.425196 AATAGCATCTGCCCAAAAATTGT 57.575 34.783 0.00 0.00 43.38 2.71
62 63 3.775261 AGCATCTGCCCAAAAATTGTT 57.225 38.095 0.00 0.00 43.38 2.83
63 64 3.667360 AGCATCTGCCCAAAAATTGTTC 58.333 40.909 0.00 0.00 43.38 3.18
64 65 3.325716 AGCATCTGCCCAAAAATTGTTCT 59.674 39.130 0.00 0.00 43.38 3.01
65 66 4.067192 GCATCTGCCCAAAAATTGTTCTT 58.933 39.130 0.00 0.00 34.31 2.52
66 67 5.011943 AGCATCTGCCCAAAAATTGTTCTTA 59.988 36.000 0.00 0.00 43.38 2.10
67 68 5.120674 GCATCTGCCCAAAAATTGTTCTTAC 59.879 40.000 0.00 0.00 34.31 2.34
68 69 5.860941 TCTGCCCAAAAATTGTTCTTACA 57.139 34.783 0.00 0.00 0.00 2.41
69 70 5.596845 TCTGCCCAAAAATTGTTCTTACAC 58.403 37.500 0.00 0.00 32.98 2.90
70 71 5.127845 TCTGCCCAAAAATTGTTCTTACACA 59.872 36.000 0.00 0.00 32.98 3.72
71 72 5.734720 TGCCCAAAAATTGTTCTTACACAA 58.265 33.333 0.00 0.00 40.92 3.33
72 73 6.173339 TGCCCAAAAATTGTTCTTACACAAA 58.827 32.000 0.00 0.00 40.07 2.83
73 74 6.655003 TGCCCAAAAATTGTTCTTACACAAAA 59.345 30.769 0.00 0.00 40.07 2.44
74 75 6.964370 GCCCAAAAATTGTTCTTACACAAAAC 59.036 34.615 0.00 0.00 40.07 2.43
75 76 7.361286 GCCCAAAAATTGTTCTTACACAAAACA 60.361 33.333 0.00 0.00 40.07 2.83
76 77 8.174422 CCCAAAAATTGTTCTTACACAAAACAG 58.826 33.333 0.00 0.00 40.07 3.16
77 78 8.930760 CCAAAAATTGTTCTTACACAAAACAGA 58.069 29.630 0.00 0.00 40.07 3.41
80 81 7.755582 AATTGTTCTTACACAAAACAGAAGC 57.244 32.000 0.00 0.00 40.07 3.86
81 82 6.509418 TTGTTCTTACACAAAACAGAAGCT 57.491 33.333 0.00 0.00 33.60 3.74
82 83 7.618502 TTGTTCTTACACAAAACAGAAGCTA 57.381 32.000 0.00 0.00 33.60 3.32
83 84 7.618502 TGTTCTTACACAAAACAGAAGCTAA 57.381 32.000 0.00 0.00 0.00 3.09
84 85 8.220755 TGTTCTTACACAAAACAGAAGCTAAT 57.779 30.769 0.00 0.00 0.00 1.73
85 86 9.332502 TGTTCTTACACAAAACAGAAGCTAATA 57.667 29.630 0.00 0.00 0.00 0.98
92 93 9.463443 ACACAAAACAGAAGCTAATATTTTGTC 57.537 29.630 20.36 0.00 44.29 3.18
93 94 8.915654 CACAAAACAGAAGCTAATATTTTGTCC 58.084 33.333 20.36 0.00 44.29 4.02
94 95 8.637986 ACAAAACAGAAGCTAATATTTTGTCCA 58.362 29.630 18.68 0.00 43.25 4.02
95 96 8.915654 CAAAACAGAAGCTAATATTTTGTCCAC 58.084 33.333 13.82 0.00 34.09 4.02
96 97 6.422776 ACAGAAGCTAATATTTTGTCCACG 57.577 37.500 0.00 0.00 0.00 4.94
97 98 6.170506 ACAGAAGCTAATATTTTGTCCACGA 58.829 36.000 0.00 0.00 0.00 4.35
98 99 6.092259 ACAGAAGCTAATATTTTGTCCACGAC 59.908 38.462 0.00 0.00 0.00 4.34
99 100 5.585047 AGAAGCTAATATTTTGTCCACGACC 59.415 40.000 0.00 0.00 0.00 4.79
100 101 4.839121 AGCTAATATTTTGTCCACGACCA 58.161 39.130 0.00 0.00 0.00 4.02
101 102 5.250200 AGCTAATATTTTGTCCACGACCAA 58.750 37.500 0.00 0.00 0.00 3.67
102 103 5.708230 AGCTAATATTTTGTCCACGACCAAA 59.292 36.000 0.00 0.00 33.06 3.28
103 104 6.207810 AGCTAATATTTTGTCCACGACCAAAA 59.792 34.615 0.00 0.00 32.46 2.44
104 105 7.033185 GCTAATATTTTGTCCACGACCAAAAT 58.967 34.615 13.06 13.06 37.23 1.82
105 106 8.185505 GCTAATATTTTGTCCACGACCAAAATA 58.814 33.333 15.72 15.72 38.36 1.40
108 109 8.925161 ATATTTTGTCCACGACCAAAATATTG 57.075 30.769 17.91 0.00 39.50 1.90
122 123 6.425577 CAAAATATTGGCAGGGTTCATTTG 57.574 37.500 0.00 0.00 32.69 2.32
123 124 6.171921 CAAAATATTGGCAGGGTTCATTTGA 58.828 36.000 0.00 0.00 32.69 2.69
124 125 6.564557 AAATATTGGCAGGGTTCATTTGAT 57.435 33.333 0.00 0.00 0.00 2.57
125 126 7.673641 AAATATTGGCAGGGTTCATTTGATA 57.326 32.000 0.00 0.00 0.00 2.15
126 127 7.673641 AATATTGGCAGGGTTCATTTGATAA 57.326 32.000 0.00 0.00 0.00 1.75
127 128 5.603170 ATTGGCAGGGTTCATTTGATAAG 57.397 39.130 0.00 0.00 0.00 1.73
128 129 4.314522 TGGCAGGGTTCATTTGATAAGA 57.685 40.909 0.00 0.00 0.00 2.10
129 130 4.272489 TGGCAGGGTTCATTTGATAAGAG 58.728 43.478 0.00 0.00 0.00 2.85
130 131 3.067320 GGCAGGGTTCATTTGATAAGAGC 59.933 47.826 0.00 0.00 0.00 4.09
131 132 3.696051 GCAGGGTTCATTTGATAAGAGCA 59.304 43.478 0.00 0.00 0.00 4.26
132 133 4.340381 GCAGGGTTCATTTGATAAGAGCAT 59.660 41.667 0.00 0.00 0.00 3.79
133 134 5.506982 GCAGGGTTCATTTGATAAGAGCATC 60.507 44.000 0.00 0.00 0.00 3.91
144 145 4.921834 GAGCATCTATAGCCGGGC 57.078 61.111 12.11 12.11 0.00 6.13
145 146 1.153745 GAGCATCTATAGCCGGGCG 60.154 63.158 14.39 0.00 0.00 6.13
146 147 2.815647 GCATCTATAGCCGGGCGC 60.816 66.667 14.39 0.00 37.98 6.53
147 148 2.125512 CATCTATAGCCGGGCGCC 60.126 66.667 21.18 21.18 38.78 6.53
148 149 2.283966 ATCTATAGCCGGGCGCCT 60.284 61.111 28.56 9.11 38.78 5.52
149 150 2.352032 ATCTATAGCCGGGCGCCTC 61.352 63.158 28.56 15.77 38.78 4.70
150 151 3.303135 CTATAGCCGGGCGCCTCA 61.303 66.667 28.56 7.44 38.78 3.86
151 152 2.840572 TATAGCCGGGCGCCTCAA 60.841 61.111 28.56 8.22 38.78 3.02
152 153 2.377628 CTATAGCCGGGCGCCTCAAA 62.378 60.000 28.56 9.01 38.78 2.69
153 154 2.653953 TATAGCCGGGCGCCTCAAAC 62.654 60.000 28.56 8.15 38.78 2.93
158 159 4.660938 GGGCGCCTCAAACCACCT 62.661 66.667 28.56 0.00 0.00 4.00
159 160 3.056328 GGCGCCTCAAACCACCTC 61.056 66.667 22.15 0.00 0.00 3.85
160 161 2.032681 GCGCCTCAAACCACCTCT 59.967 61.111 0.00 0.00 0.00 3.69
161 162 1.295423 GCGCCTCAAACCACCTCTA 59.705 57.895 0.00 0.00 0.00 2.43
162 163 0.107654 GCGCCTCAAACCACCTCTAT 60.108 55.000 0.00 0.00 0.00 1.98
163 164 1.138266 GCGCCTCAAACCACCTCTATA 59.862 52.381 0.00 0.00 0.00 1.31
164 165 2.224305 GCGCCTCAAACCACCTCTATAT 60.224 50.000 0.00 0.00 0.00 0.86
165 166 3.393800 CGCCTCAAACCACCTCTATATG 58.606 50.000 0.00 0.00 0.00 1.78
166 167 3.181465 CGCCTCAAACCACCTCTATATGT 60.181 47.826 0.00 0.00 0.00 2.29
167 168 4.381411 GCCTCAAACCACCTCTATATGTC 58.619 47.826 0.00 0.00 0.00 3.06
168 169 4.743955 GCCTCAAACCACCTCTATATGTCC 60.744 50.000 0.00 0.00 0.00 4.02
169 170 4.501571 CCTCAAACCACCTCTATATGTCCG 60.502 50.000 0.00 0.00 0.00 4.79
170 171 3.386726 TCAAACCACCTCTATATGTCCGG 59.613 47.826 0.00 0.00 0.00 5.14
171 172 3.323774 AACCACCTCTATATGTCCGGA 57.676 47.619 0.00 0.00 0.00 5.14
172 173 3.544698 ACCACCTCTATATGTCCGGAT 57.455 47.619 7.81 0.00 0.00 4.18
173 174 4.669866 ACCACCTCTATATGTCCGGATA 57.330 45.455 7.81 4.93 0.00 2.59
174 175 4.601084 ACCACCTCTATATGTCCGGATAG 58.399 47.826 7.81 5.32 0.00 2.08
175 176 4.291513 ACCACCTCTATATGTCCGGATAGA 59.708 45.833 7.81 9.99 34.32 1.98
176 177 5.044030 ACCACCTCTATATGTCCGGATAGAT 60.044 44.000 7.81 11.06 34.84 1.98
177 178 5.300539 CCACCTCTATATGTCCGGATAGATG 59.699 48.000 17.57 14.07 34.84 2.90
178 179 5.300539 CACCTCTATATGTCCGGATAGATGG 59.699 48.000 17.57 14.80 34.84 3.51
179 180 5.193930 ACCTCTATATGTCCGGATAGATGGA 59.806 44.000 18.36 18.36 34.84 3.41
180 181 6.129874 CCTCTATATGTCCGGATAGATGGAA 58.870 44.000 19.54 7.08 34.84 3.53
181 182 6.039941 CCTCTATATGTCCGGATAGATGGAAC 59.960 46.154 19.54 0.67 34.84 3.62
182 183 4.720649 ATATGTCCGGATAGATGGAACG 57.279 45.455 7.81 0.00 35.67 3.95
183 184 1.037493 TGTCCGGATAGATGGAACGG 58.963 55.000 7.81 0.00 45.52 4.44
184 185 1.038280 GTCCGGATAGATGGAACGGT 58.962 55.000 7.81 0.00 44.54 4.83
185 186 1.000496 GTCCGGATAGATGGAACGGTC 60.000 57.143 7.81 0.00 44.54 4.79
186 187 1.037493 CCGGATAGATGGAACGGTCA 58.963 55.000 1.31 0.00 39.70 4.02
187 188 1.269621 CCGGATAGATGGAACGGTCAC 60.270 57.143 1.31 0.00 39.70 3.67
188 189 1.681793 CGGATAGATGGAACGGTCACT 59.318 52.381 1.31 0.73 0.00 3.41
189 190 2.543861 CGGATAGATGGAACGGTCACTG 60.544 54.545 1.31 0.00 0.00 3.66
190 191 2.224066 GGATAGATGGAACGGTCACTGG 60.224 54.545 1.31 0.00 0.00 4.00
191 192 0.535335 TAGATGGAACGGTCACTGGC 59.465 55.000 1.31 0.00 0.00 4.85
192 193 1.745489 GATGGAACGGTCACTGGCC 60.745 63.158 1.31 0.00 0.00 5.36
193 194 2.463589 GATGGAACGGTCACTGGCCA 62.464 60.000 4.71 4.71 0.00 5.36
194 195 1.852157 ATGGAACGGTCACTGGCCAT 61.852 55.000 5.51 7.32 0.00 4.40
195 196 1.195442 TGGAACGGTCACTGGCCATA 61.195 55.000 5.51 0.00 0.00 2.74
196 197 0.035820 GGAACGGTCACTGGCCATAA 60.036 55.000 5.51 0.00 0.00 1.90
197 198 1.612199 GGAACGGTCACTGGCCATAAA 60.612 52.381 5.51 0.00 0.00 1.40
198 199 2.156098 GAACGGTCACTGGCCATAAAA 58.844 47.619 5.51 0.00 0.00 1.52
199 200 2.279935 ACGGTCACTGGCCATAAAAA 57.720 45.000 5.51 0.00 0.00 1.94
223 224 3.330766 CGATCAAGACGGACACCTC 57.669 57.895 0.00 0.00 0.00 3.85
224 225 0.526211 CGATCAAGACGGACACCTCA 59.474 55.000 0.00 0.00 0.00 3.86
225 226 1.067846 CGATCAAGACGGACACCTCAA 60.068 52.381 0.00 0.00 0.00 3.02
226 227 2.609491 CGATCAAGACGGACACCTCAAA 60.609 50.000 0.00 0.00 0.00 2.69
227 228 2.234300 TCAAGACGGACACCTCAAAC 57.766 50.000 0.00 0.00 0.00 2.93
228 229 1.202604 TCAAGACGGACACCTCAAACC 60.203 52.381 0.00 0.00 0.00 3.27
231 232 2.424302 CGGACACCTCAAACCGGT 59.576 61.111 0.00 0.00 41.41 5.28
232 233 1.666872 CGGACACCTCAAACCGGTC 60.667 63.158 8.04 0.00 41.41 4.79
233 234 1.752833 GGACACCTCAAACCGGTCT 59.247 57.895 8.04 0.00 30.82 3.85
234 235 0.108019 GGACACCTCAAACCGGTCTT 59.892 55.000 8.04 1.26 30.82 3.01
235 236 1.345415 GGACACCTCAAACCGGTCTTA 59.655 52.381 8.04 0.00 30.82 2.10
236 237 2.224354 GGACACCTCAAACCGGTCTTAA 60.224 50.000 8.04 0.00 30.82 1.85
237 238 3.469739 GACACCTCAAACCGGTCTTAAA 58.530 45.455 8.04 0.00 30.82 1.52
238 239 3.208594 ACACCTCAAACCGGTCTTAAAC 58.791 45.455 8.04 0.00 30.82 2.01
239 240 2.222445 CACCTCAAACCGGTCTTAAACG 59.778 50.000 8.04 0.00 30.82 3.60
240 241 2.158914 ACCTCAAACCGGTCTTAAACGT 60.159 45.455 8.04 0.00 0.00 3.99
241 242 2.477754 CCTCAAACCGGTCTTAAACGTC 59.522 50.000 8.04 0.00 0.00 4.34
242 243 2.477754 CTCAAACCGGTCTTAAACGTCC 59.522 50.000 8.04 0.00 0.00 4.79
243 244 1.192980 CAAACCGGTCTTAAACGTCCG 59.807 52.381 8.04 4.25 42.22 4.79
245 246 4.173971 CGGTCTTAAACGTCCGGG 57.826 61.111 0.00 0.00 39.41 5.73
246 247 2.096442 CGGTCTTAAACGTCCGGGC 61.096 63.158 0.00 0.00 39.41 6.13
247 248 1.294459 GGTCTTAAACGTCCGGGCT 59.706 57.895 3.66 0.00 0.00 5.19
248 249 1.017701 GGTCTTAAACGTCCGGGCTG 61.018 60.000 3.66 0.00 0.00 4.85
249 250 0.037975 GTCTTAAACGTCCGGGCTGA 60.038 55.000 3.66 0.00 0.00 4.26
250 251 0.899720 TCTTAAACGTCCGGGCTGAT 59.100 50.000 3.66 0.00 0.00 2.90
251 252 1.134907 TCTTAAACGTCCGGGCTGATC 60.135 52.381 3.66 0.00 0.00 2.92
252 253 0.609151 TTAAACGTCCGGGCTGATCA 59.391 50.000 3.66 0.00 0.00 2.92
253 254 0.828022 TAAACGTCCGGGCTGATCAT 59.172 50.000 3.66 0.00 0.00 2.45
254 255 0.462047 AAACGTCCGGGCTGATCATC 60.462 55.000 3.66 0.00 0.00 2.92
255 256 1.613317 AACGTCCGGGCTGATCATCA 61.613 55.000 3.66 0.00 0.00 3.07
256 257 1.368950 CGTCCGGGCTGATCATCAT 59.631 57.895 3.66 0.00 0.00 2.45
257 258 0.668706 CGTCCGGGCTGATCATCATC 60.669 60.000 3.66 0.00 0.00 2.92
258 259 0.321122 GTCCGGGCTGATCATCATCC 60.321 60.000 0.00 0.00 32.12 3.51
259 260 1.002868 CCGGGCTGATCATCATCCC 60.003 63.158 15.82 15.82 46.64 3.85
261 262 3.953006 GGGCTGATCATCATCCCTC 57.047 57.895 18.16 0.00 46.60 4.30
262 263 1.062364 GGGCTGATCATCATCCCTCA 58.938 55.000 18.16 0.00 46.60 3.86
263 264 1.634459 GGGCTGATCATCATCCCTCAT 59.366 52.381 18.16 0.00 46.60 2.90
264 265 2.842496 GGGCTGATCATCATCCCTCATA 59.158 50.000 18.16 0.00 46.60 2.15
265 266 3.458857 GGGCTGATCATCATCCCTCATAT 59.541 47.826 18.16 0.00 46.60 1.78
266 267 4.444591 GGGCTGATCATCATCCCTCATATC 60.445 50.000 18.16 0.00 46.60 1.63
267 268 4.444591 GGCTGATCATCATCCCTCATATCC 60.445 50.000 0.00 0.00 26.69 2.59
268 269 4.163649 GCTGATCATCATCCCTCATATCCA 59.836 45.833 0.00 0.00 0.00 3.41
269 270 5.685337 GCTGATCATCATCCCTCATATCCAG 60.685 48.000 0.00 0.00 0.00 3.86
270 271 4.163649 TGATCATCATCCCTCATATCCAGC 59.836 45.833 0.00 0.00 0.00 4.85
271 272 2.842496 TCATCATCCCTCATATCCAGCC 59.158 50.000 0.00 0.00 0.00 4.85
272 273 1.661463 TCATCCCTCATATCCAGCCC 58.339 55.000 0.00 0.00 0.00 5.19
273 274 1.132430 TCATCCCTCATATCCAGCCCA 60.132 52.381 0.00 0.00 0.00 5.36
274 275 1.706866 CATCCCTCATATCCAGCCCAA 59.293 52.381 0.00 0.00 0.00 4.12
275 276 2.138535 TCCCTCATATCCAGCCCAAT 57.861 50.000 0.00 0.00 0.00 3.16
276 277 2.431997 TCCCTCATATCCAGCCCAATT 58.568 47.619 0.00 0.00 0.00 2.32
277 278 2.376518 TCCCTCATATCCAGCCCAATTC 59.623 50.000 0.00 0.00 0.00 2.17
278 279 2.377869 CCCTCATATCCAGCCCAATTCT 59.622 50.000 0.00 0.00 0.00 2.40
279 280 3.418995 CCTCATATCCAGCCCAATTCTG 58.581 50.000 0.00 0.00 0.00 3.02
291 292 2.880443 CCAATTCTGGGGTGGATATGG 58.120 52.381 0.00 0.00 39.30 2.74
292 293 2.491455 CCAATTCTGGGGTGGATATGGG 60.491 54.545 0.00 0.00 39.30 4.00
293 294 1.460218 ATTCTGGGGTGGATATGGGG 58.540 55.000 0.00 0.00 0.00 4.96
294 295 1.360393 TTCTGGGGTGGATATGGGGC 61.360 60.000 0.00 0.00 0.00 5.80
295 296 1.775877 CTGGGGTGGATATGGGGCT 60.776 63.158 0.00 0.00 0.00 5.19
296 297 2.072874 CTGGGGTGGATATGGGGCTG 62.073 65.000 0.00 0.00 0.00 4.85
297 298 2.084930 GGGGTGGATATGGGGCTGT 61.085 63.158 0.00 0.00 0.00 4.40
298 299 1.456287 GGGTGGATATGGGGCTGTC 59.544 63.158 0.00 0.00 0.00 3.51
299 300 1.456287 GGTGGATATGGGGCTGTCC 59.544 63.158 0.00 0.00 0.00 4.02
300 301 1.071471 GTGGATATGGGGCTGTCCG 59.929 63.158 0.00 0.00 36.01 4.79
301 302 2.146724 TGGATATGGGGCTGTCCGG 61.147 63.158 0.00 0.00 36.01 5.14
302 303 2.750350 GATATGGGGCTGTCCGGG 59.250 66.667 0.00 0.00 36.01 5.73
303 304 2.039831 ATATGGGGCTGTCCGGGT 60.040 61.111 0.00 0.00 36.01 5.28
304 305 2.397413 GATATGGGGCTGTCCGGGTG 62.397 65.000 0.00 0.00 36.01 4.61
311 312 4.742201 CTGTCCGGGTGCGTCCAG 62.742 72.222 0.00 0.00 38.11 3.86
322 323 2.579787 CGTCCAGCACGTCGGATC 60.580 66.667 0.00 0.00 44.07 3.36
323 324 2.202756 GTCCAGCACGTCGGATCC 60.203 66.667 0.00 0.00 32.83 3.36
324 325 3.822192 TCCAGCACGTCGGATCCG 61.822 66.667 28.62 28.62 41.35 4.18
325 326 4.873129 CCAGCACGTCGGATCCGG 62.873 72.222 32.79 20.49 40.25 5.14
335 336 4.301027 GGATCCGGCCCACGCTAG 62.301 72.222 0.00 0.00 42.52 3.42
336 337 4.971125 GATCCGGCCCACGCTAGC 62.971 72.222 4.06 4.06 42.52 3.42
341 342 3.155167 GGCCCACGCTAGCCTACT 61.155 66.667 9.66 0.00 46.14 2.57
342 343 2.417936 GCCCACGCTAGCCTACTC 59.582 66.667 9.66 0.00 0.00 2.59
343 344 2.722487 CCCACGCTAGCCTACTCG 59.278 66.667 9.66 0.00 0.00 4.18
344 345 1.822613 CCCACGCTAGCCTACTCGA 60.823 63.158 9.66 0.00 0.00 4.04
345 346 1.173444 CCCACGCTAGCCTACTCGAT 61.173 60.000 9.66 0.00 0.00 3.59
346 347 0.238817 CCACGCTAGCCTACTCGATC 59.761 60.000 9.66 0.00 0.00 3.69
347 348 0.238817 CACGCTAGCCTACTCGATCC 59.761 60.000 9.66 0.00 0.00 3.36
348 349 1.229315 ACGCTAGCCTACTCGATCCG 61.229 60.000 9.66 0.00 0.00 4.18
349 350 0.949588 CGCTAGCCTACTCGATCCGA 60.950 60.000 9.66 0.00 0.00 4.55
350 351 0.518195 GCTAGCCTACTCGATCCGAC 59.482 60.000 2.29 0.00 0.00 4.79
351 352 1.880271 CTAGCCTACTCGATCCGACA 58.120 55.000 0.00 0.00 0.00 4.35
352 353 2.428491 CTAGCCTACTCGATCCGACAT 58.572 52.381 0.00 0.00 0.00 3.06
353 354 2.563261 AGCCTACTCGATCCGACATA 57.437 50.000 0.00 0.00 0.00 2.29
354 355 3.074675 AGCCTACTCGATCCGACATAT 57.925 47.619 0.00 0.00 0.00 1.78
355 356 4.217836 AGCCTACTCGATCCGACATATA 57.782 45.455 0.00 0.00 0.00 0.86
356 357 4.783055 AGCCTACTCGATCCGACATATAT 58.217 43.478 0.00 0.00 0.00 0.86
357 358 5.926663 AGCCTACTCGATCCGACATATATA 58.073 41.667 0.00 0.00 0.00 0.86
358 359 6.535540 AGCCTACTCGATCCGACATATATAT 58.464 40.000 0.00 0.00 0.00 0.86
359 360 7.677892 AGCCTACTCGATCCGACATATATATA 58.322 38.462 0.00 0.00 0.00 0.86
360 361 8.322828 AGCCTACTCGATCCGACATATATATAT 58.677 37.037 0.00 0.00 0.00 0.86
361 362 8.948145 GCCTACTCGATCCGACATATATATATT 58.052 37.037 2.28 0.00 0.00 1.28
364 365 8.604640 ACTCGATCCGACATATATATATTCGT 57.395 34.615 22.00 12.63 0.00 3.85
365 366 9.053840 ACTCGATCCGACATATATATATTCGTT 57.946 33.333 22.00 15.19 0.00 3.85
366 367 9.531412 CTCGATCCGACATATATATATTCGTTC 57.469 37.037 22.00 18.72 0.00 3.95
367 368 9.269453 TCGATCCGACATATATATATTCGTTCT 57.731 33.333 22.00 13.47 0.00 3.01
368 369 9.531412 CGATCCGACATATATATATTCGTTCTC 57.469 37.037 22.00 17.12 0.00 2.87
372 373 9.613957 CCGACATATATATATTCGTTCTCATCC 57.386 37.037 22.00 3.32 0.00 3.51
373 374 9.319223 CGACATATATATATTCGTTCTCATCCG 57.681 37.037 18.86 6.53 0.00 4.18
374 375 9.119329 GACATATATATATTCGTTCTCATCCGC 57.881 37.037 2.28 0.00 0.00 5.54
375 376 8.851145 ACATATATATATTCGTTCTCATCCGCT 58.149 33.333 2.28 0.00 0.00 5.52
376 377 9.335891 CATATATATATTCGTTCTCATCCGCTC 57.664 37.037 2.28 0.00 0.00 5.03
377 378 2.795175 TATTCGTTCTCATCCGCTCC 57.205 50.000 0.00 0.00 0.00 4.70
378 379 0.105039 ATTCGTTCTCATCCGCTCCC 59.895 55.000 0.00 0.00 0.00 4.30
379 380 1.956629 TTCGTTCTCATCCGCTCCCC 61.957 60.000 0.00 0.00 0.00 4.81
380 381 2.107141 GTTCTCATCCGCTCCCCG 59.893 66.667 0.00 0.00 0.00 5.73
392 393 3.613674 TCCCCGGACCAACCCCTA 61.614 66.667 0.73 0.00 34.64 3.53
393 394 3.087906 CCCCGGACCAACCCCTAG 61.088 72.222 0.73 0.00 34.64 3.02
394 395 2.285144 CCCGGACCAACCCCTAGT 60.285 66.667 0.73 0.00 34.64 2.57
395 396 2.364780 CCCGGACCAACCCCTAGTC 61.365 68.421 0.73 0.00 34.64 2.59
396 397 1.611261 CCGGACCAACCCCTAGTCA 60.611 63.158 0.00 0.00 34.64 3.41
397 398 1.595357 CGGACCAACCCCTAGTCAC 59.405 63.158 0.00 0.00 34.64 3.67
398 399 0.903454 CGGACCAACCCCTAGTCACT 60.903 60.000 0.00 0.00 34.64 3.41
399 400 0.903236 GGACCAACCCCTAGTCACTC 59.097 60.000 0.00 0.00 31.99 3.51
400 401 0.903236 GACCAACCCCTAGTCACTCC 59.097 60.000 0.00 0.00 0.00 3.85
401 402 0.546988 ACCAACCCCTAGTCACTCCC 60.547 60.000 0.00 0.00 0.00 4.30
402 403 1.272554 CCAACCCCTAGTCACTCCCC 61.273 65.000 0.00 0.00 0.00 4.81
403 404 0.252742 CAACCCCTAGTCACTCCCCT 60.253 60.000 0.00 0.00 0.00 4.79
404 405 0.042881 AACCCCTAGTCACTCCCCTC 59.957 60.000 0.00 0.00 0.00 4.30
405 406 1.075151 CCCCTAGTCACTCCCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
406 407 1.455959 CCCTAGTCACTCCCCTCCG 60.456 68.421 0.00 0.00 0.00 4.63
407 408 2.128507 CCTAGTCACTCCCCTCCGC 61.129 68.421 0.00 0.00 0.00 5.54
408 409 1.076632 CTAGTCACTCCCCTCCGCT 60.077 63.158 0.00 0.00 0.00 5.52
409 410 1.076923 TAGTCACTCCCCTCCGCTC 60.077 63.158 0.00 0.00 0.00 5.03
410 411 2.569218 TAGTCACTCCCCTCCGCTCC 62.569 65.000 0.00 0.00 0.00 4.70
414 415 4.824515 CTCCCCTCCGCTCCGACT 62.825 72.222 0.00 0.00 0.00 4.18
415 416 4.816984 TCCCCTCCGCTCCGACTC 62.817 72.222 0.00 0.00 0.00 3.36
418 419 3.068691 CCTCCGCTCCGACTCCAA 61.069 66.667 0.00 0.00 0.00 3.53
419 420 2.492090 CTCCGCTCCGACTCCAAG 59.508 66.667 0.00 0.00 0.00 3.61
420 421 3.708220 CTCCGCTCCGACTCCAAGC 62.708 68.421 0.00 0.00 0.00 4.01
421 422 3.764466 CCGCTCCGACTCCAAGCT 61.764 66.667 0.00 0.00 33.83 3.74
422 423 2.202676 CGCTCCGACTCCAAGCTC 60.203 66.667 0.00 0.00 33.83 4.09
423 424 2.185608 GCTCCGACTCCAAGCTCC 59.814 66.667 0.00 0.00 33.23 4.70
424 425 2.650116 GCTCCGACTCCAAGCTCCA 61.650 63.158 0.00 0.00 33.23 3.86
425 426 1.965754 GCTCCGACTCCAAGCTCCAT 61.966 60.000 0.00 0.00 33.23 3.41
426 427 0.539051 CTCCGACTCCAAGCTCCATT 59.461 55.000 0.00 0.00 0.00 3.16
427 428 0.537188 TCCGACTCCAAGCTCCATTC 59.463 55.000 0.00 0.00 0.00 2.67
428 429 0.539051 CCGACTCCAAGCTCCATTCT 59.461 55.000 0.00 0.00 0.00 2.40
429 430 1.649664 CGACTCCAAGCTCCATTCTG 58.350 55.000 0.00 0.00 0.00 3.02
430 431 1.205655 CGACTCCAAGCTCCATTCTGA 59.794 52.381 0.00 0.00 0.00 3.27
431 432 2.626840 GACTCCAAGCTCCATTCTGAC 58.373 52.381 0.00 0.00 0.00 3.51
432 433 1.066573 ACTCCAAGCTCCATTCTGACG 60.067 52.381 0.00 0.00 0.00 4.35
433 434 1.205655 CTCCAAGCTCCATTCTGACGA 59.794 52.381 0.00 0.00 0.00 4.20
434 435 1.623311 TCCAAGCTCCATTCTGACGAA 59.377 47.619 0.00 0.00 0.00 3.85
435 436 1.734465 CCAAGCTCCATTCTGACGAAC 59.266 52.381 0.00 0.00 30.67 3.95
436 437 2.613977 CCAAGCTCCATTCTGACGAACT 60.614 50.000 0.00 0.00 30.67 3.01
437 438 2.663826 AGCTCCATTCTGACGAACTC 57.336 50.000 0.00 0.00 30.67 3.01
438 439 2.175202 AGCTCCATTCTGACGAACTCT 58.825 47.619 0.00 0.00 30.67 3.24
439 440 2.094286 AGCTCCATTCTGACGAACTCTG 60.094 50.000 0.00 0.00 30.67 3.35
440 441 2.886081 CTCCATTCTGACGAACTCTGG 58.114 52.381 0.00 0.00 31.15 3.86
441 442 1.066858 TCCATTCTGACGAACTCTGGC 60.067 52.381 0.00 0.00 30.38 4.85
442 443 1.363744 CATTCTGACGAACTCTGGCC 58.636 55.000 0.00 0.00 30.67 5.36
443 444 1.066573 CATTCTGACGAACTCTGGCCT 60.067 52.381 3.32 0.00 30.67 5.19
444 445 1.048601 TTCTGACGAACTCTGGCCTT 58.951 50.000 3.32 0.00 0.00 4.35
445 446 0.603569 TCTGACGAACTCTGGCCTTC 59.396 55.000 3.32 0.00 0.00 3.46
446 447 0.605589 CTGACGAACTCTGGCCTTCT 59.394 55.000 3.32 0.00 0.00 2.85
447 448 0.603569 TGACGAACTCTGGCCTTCTC 59.396 55.000 3.32 0.23 0.00 2.87
448 449 0.108567 GACGAACTCTGGCCTTCTCC 60.109 60.000 3.32 0.00 0.00 3.71
449 450 1.153745 CGAACTCTGGCCTTCTCCG 60.154 63.158 3.32 0.00 0.00 4.63
450 451 1.219393 GAACTCTGGCCTTCTCCGG 59.781 63.158 3.32 0.00 0.00 5.14
458 459 4.473520 CCTTCTCCGGCATGGCGT 62.474 66.667 35.39 0.00 37.80 5.68
459 460 2.892425 CTTCTCCGGCATGGCGTC 60.892 66.667 35.39 0.00 37.80 5.19
460 461 4.467084 TTCTCCGGCATGGCGTCC 62.467 66.667 35.39 8.94 37.80 4.79
470 471 3.409384 TGGCGTCCCATGGATTGA 58.591 55.556 15.22 0.00 35.79 2.57
471 472 1.224315 TGGCGTCCCATGGATTGAG 59.776 57.895 15.22 0.00 35.79 3.02
472 473 1.224592 GGCGTCCCATGGATTGAGT 59.775 57.895 15.22 0.00 32.73 3.41
473 474 0.468226 GGCGTCCCATGGATTGAGTA 59.532 55.000 15.22 0.00 32.73 2.59
474 475 1.583054 GCGTCCCATGGATTGAGTAC 58.417 55.000 15.22 0.00 32.73 2.73
475 476 1.139058 GCGTCCCATGGATTGAGTACT 59.861 52.381 15.22 0.00 32.73 2.73
476 477 2.803492 GCGTCCCATGGATTGAGTACTC 60.803 54.545 15.22 16.32 32.73 2.59
477 478 2.224066 CGTCCCATGGATTGAGTACTCC 60.224 54.545 20.11 6.18 32.73 3.85
478 479 2.771943 GTCCCATGGATTGAGTACTCCA 59.228 50.000 20.11 11.97 45.27 3.86
484 485 2.435805 TGGATTGAGTACTCCATGAGGC 59.564 50.000 20.11 3.00 36.63 4.70
485 486 2.224402 GGATTGAGTACTCCATGAGGCC 60.224 54.545 20.11 8.29 33.35 5.19
486 487 0.824109 TTGAGTACTCCATGAGGCCG 59.176 55.000 20.11 0.00 33.35 6.13
487 488 0.033503 TGAGTACTCCATGAGGCCGA 60.034 55.000 20.11 0.00 33.35 5.54
488 489 0.671251 GAGTACTCCATGAGGCCGAG 59.329 60.000 12.13 0.00 33.35 4.63
489 490 0.757188 AGTACTCCATGAGGCCGAGG 60.757 60.000 9.12 4.75 33.35 4.63
490 491 0.755698 GTACTCCATGAGGCCGAGGA 60.756 60.000 9.12 8.54 33.35 3.71
491 492 3.136750 CTCCATGAGGCCGAGGAG 58.863 66.667 17.40 17.40 41.43 3.69
492 493 2.444706 TCCATGAGGCCGAGGAGG 60.445 66.667 0.00 0.00 44.97 4.30
493 494 2.444706 CCATGAGGCCGAGGAGGA 60.445 66.667 0.00 0.00 45.00 3.71
494 495 2.506061 CCATGAGGCCGAGGAGGAG 61.506 68.421 0.00 0.00 45.00 3.69
495 496 1.456518 CATGAGGCCGAGGAGGAGA 60.457 63.158 0.00 0.00 45.00 3.71
496 497 0.831288 CATGAGGCCGAGGAGGAGAT 60.831 60.000 0.00 0.00 45.00 2.75
497 498 0.831288 ATGAGGCCGAGGAGGAGATG 60.831 60.000 0.00 0.00 45.00 2.90
498 499 1.152652 GAGGCCGAGGAGGAGATGA 60.153 63.158 0.00 0.00 45.00 2.92
499 500 1.456705 AGGCCGAGGAGGAGATGAC 60.457 63.158 0.00 0.00 45.00 3.06
500 501 2.503382 GGCCGAGGAGGAGATGACC 61.503 68.421 0.00 0.00 45.00 4.02
501 502 1.758514 GCCGAGGAGGAGATGACCA 60.759 63.158 0.00 0.00 45.00 4.02
502 503 1.118356 GCCGAGGAGGAGATGACCAT 61.118 60.000 0.00 0.00 45.00 3.55
503 504 1.418334 CCGAGGAGGAGATGACCATT 58.582 55.000 0.00 0.00 45.00 3.16
504 505 1.342819 CCGAGGAGGAGATGACCATTC 59.657 57.143 0.00 0.00 45.00 2.67
505 506 1.000827 CGAGGAGGAGATGACCATTCG 60.001 57.143 0.00 0.00 0.00 3.34
506 507 0.755686 AGGAGGAGATGACCATTCGC 59.244 55.000 0.00 0.00 0.00 4.70
507 508 0.465705 GGAGGAGATGACCATTCGCA 59.534 55.000 0.00 0.00 0.00 5.10
508 509 1.071385 GGAGGAGATGACCATTCGCAT 59.929 52.381 0.00 0.00 0.00 4.73
509 510 2.486191 GGAGGAGATGACCATTCGCATT 60.486 50.000 0.00 0.00 0.00 3.56
510 511 3.244215 GGAGGAGATGACCATTCGCATTA 60.244 47.826 0.00 0.00 0.00 1.90
511 512 3.733337 AGGAGATGACCATTCGCATTAC 58.267 45.455 0.00 0.00 0.00 1.89
512 513 2.476619 GGAGATGACCATTCGCATTACG 59.523 50.000 0.00 0.00 45.62 3.18
513 514 1.867233 AGATGACCATTCGCATTACGC 59.133 47.619 0.00 0.00 43.23 4.42
514 515 1.867233 GATGACCATTCGCATTACGCT 59.133 47.619 0.00 0.00 43.23 5.07
515 516 1.286501 TGACCATTCGCATTACGCTC 58.713 50.000 0.00 0.00 43.23 5.03
516 517 0.582005 GACCATTCGCATTACGCTCC 59.418 55.000 0.00 0.00 43.23 4.70
517 518 1.151777 ACCATTCGCATTACGCTCCG 61.152 55.000 0.00 0.00 43.23 4.63
518 519 1.083401 CATTCGCATTACGCTCCGC 60.083 57.895 0.00 0.00 43.23 5.54
519 520 2.244651 ATTCGCATTACGCTCCGCC 61.245 57.895 0.00 0.00 43.23 6.13
522 523 3.925238 GCATTACGCTCCGCCGTG 61.925 66.667 4.60 0.00 42.15 4.94
523 524 2.508439 CATTACGCTCCGCCGTGT 60.508 61.111 4.60 0.00 42.15 4.49
524 525 2.202703 ATTACGCTCCGCCGTGTC 60.203 61.111 4.60 0.00 42.15 3.67
525 526 3.711541 ATTACGCTCCGCCGTGTCC 62.712 63.158 4.60 0.00 42.15 4.02
530 531 4.554363 CTCCGCCGTGTCCGCTAG 62.554 72.222 0.00 0.00 0.00 3.42
540 541 3.145551 TCCGCTAGGAGAACGCCC 61.146 66.667 0.00 0.00 42.75 6.13
541 542 4.570663 CCGCTAGGAGAACGCCCG 62.571 72.222 0.00 0.00 41.02 6.13
542 543 3.515286 CGCTAGGAGAACGCCCGA 61.515 66.667 0.00 0.00 0.00 5.14
543 544 2.104530 GCTAGGAGAACGCCCGAC 59.895 66.667 0.00 0.00 0.00 4.79
544 545 2.707849 GCTAGGAGAACGCCCGACA 61.708 63.158 0.00 0.00 0.00 4.35
545 546 1.433879 CTAGGAGAACGCCCGACAG 59.566 63.158 0.00 0.00 0.00 3.51
546 547 2.615262 CTAGGAGAACGCCCGACAGC 62.615 65.000 0.00 0.00 0.00 4.40
557 558 2.805353 CGACAGCGGTTGGACTCG 60.805 66.667 0.00 0.00 0.00 4.18
558 559 2.649034 GACAGCGGTTGGACTCGA 59.351 61.111 0.00 0.00 0.00 4.04
559 560 1.215647 GACAGCGGTTGGACTCGAT 59.784 57.895 0.00 0.00 0.00 3.59
560 561 0.802607 GACAGCGGTTGGACTCGATC 60.803 60.000 0.00 0.00 0.00 3.69
568 569 3.524606 GGACTCGATCCGCCGGAA 61.525 66.667 11.19 0.00 37.88 4.30
569 570 2.728817 GACTCGATCCGCCGGAAT 59.271 61.111 11.19 0.00 34.34 3.01
570 571 1.371881 GACTCGATCCGCCGGAATC 60.372 63.158 11.19 7.71 34.34 2.52
571 572 2.049063 CTCGATCCGCCGGAATCC 60.049 66.667 11.19 1.27 34.34 3.01
572 573 2.835895 TCGATCCGCCGGAATCCA 60.836 61.111 11.19 0.00 34.34 3.41
573 574 2.159819 CTCGATCCGCCGGAATCCAT 62.160 60.000 11.19 0.00 34.34 3.41
574 575 0.896479 TCGATCCGCCGGAATCCATA 60.896 55.000 11.19 0.00 34.34 2.74
575 576 0.458543 CGATCCGCCGGAATCCATAG 60.459 60.000 11.19 0.00 34.34 2.23
576 577 0.741221 GATCCGCCGGAATCCATAGC 60.741 60.000 11.19 0.00 34.34 2.97
577 578 1.480212 ATCCGCCGGAATCCATAGCA 61.480 55.000 11.19 0.00 34.34 3.49
578 579 1.003355 CCGCCGGAATCCATAGCAT 60.003 57.895 5.05 0.00 0.00 3.79
579 580 0.249120 CCGCCGGAATCCATAGCATA 59.751 55.000 5.05 0.00 0.00 3.14
580 581 1.338674 CCGCCGGAATCCATAGCATAA 60.339 52.381 5.05 0.00 0.00 1.90
581 582 2.632377 CGCCGGAATCCATAGCATAAT 58.368 47.619 5.05 0.00 0.00 1.28
582 583 2.352651 CGCCGGAATCCATAGCATAATG 59.647 50.000 5.05 0.00 0.00 1.90
583 584 2.098117 GCCGGAATCCATAGCATAATGC 59.902 50.000 5.05 0.00 45.46 3.56
584 585 2.684881 CCGGAATCCATAGCATAATGCC 59.315 50.000 0.00 0.00 46.52 4.40
585 586 2.684881 CGGAATCCATAGCATAATGCCC 59.315 50.000 0.00 0.00 46.52 5.36
586 587 3.026694 GGAATCCATAGCATAATGCCCC 58.973 50.000 0.00 0.00 46.52 5.80
587 588 2.425143 ATCCATAGCATAATGCCCCG 57.575 50.000 0.00 0.00 46.52 5.73
588 589 0.327924 TCCATAGCATAATGCCCCGG 59.672 55.000 0.00 0.00 46.52 5.73
589 590 1.315257 CCATAGCATAATGCCCCGGC 61.315 60.000 0.00 0.00 46.52 6.13
599 600 2.675075 GCCCCGGCAACAAAGCTA 60.675 61.111 0.00 0.00 41.49 3.32
600 601 2.989881 GCCCCGGCAACAAAGCTAC 61.990 63.158 0.00 0.00 41.49 3.58
601 602 2.686816 CCCCGGCAACAAAGCTACG 61.687 63.158 0.00 0.00 34.17 3.51
602 603 2.175811 CCGGCAACAAAGCTACGC 59.824 61.111 0.00 0.00 34.17 4.42
603 604 2.202171 CGGCAACAAAGCTACGCG 60.202 61.111 3.53 3.53 34.17 6.01
604 605 2.501865 GGCAACAAAGCTACGCGC 60.502 61.111 5.73 0.00 39.57 6.86
605 606 2.865151 GCAACAAAGCTACGCGCG 60.865 61.111 30.96 30.96 45.59 6.86
606 607 2.865151 CAACAAAGCTACGCGCGC 60.865 61.111 32.58 23.91 45.59 6.86
607 608 3.342627 AACAAAGCTACGCGCGCA 61.343 55.556 32.58 18.11 45.59 6.09
608 609 3.573489 AACAAAGCTACGCGCGCAC 62.573 57.895 32.58 19.71 45.59 5.34
609 610 3.777925 CAAAGCTACGCGCGCACT 61.778 61.111 32.58 21.84 45.59 4.40
610 611 3.777925 AAAGCTACGCGCGCACTG 61.778 61.111 32.58 19.93 45.59 3.66
620 621 4.400961 GCGCACTGCCCCTCTTCT 62.401 66.667 0.30 0.00 37.76 2.85
621 622 2.348998 CGCACTGCCCCTCTTCTT 59.651 61.111 0.00 0.00 0.00 2.52
622 623 1.743252 CGCACTGCCCCTCTTCTTC 60.743 63.158 0.00 0.00 0.00 2.87
623 624 1.682257 GCACTGCCCCTCTTCTTCT 59.318 57.895 0.00 0.00 0.00 2.85
624 625 0.037447 GCACTGCCCCTCTTCTTCTT 59.963 55.000 0.00 0.00 0.00 2.52
625 626 1.948144 GCACTGCCCCTCTTCTTCTTC 60.948 57.143 0.00 0.00 0.00 2.87
626 627 1.627834 CACTGCCCCTCTTCTTCTTCT 59.372 52.381 0.00 0.00 0.00 2.85
898 901 0.534873 GCTCGCCTCTTCCTCTCTTT 59.465 55.000 0.00 0.00 0.00 2.52
1315 1330 2.685897 GGCCGTAGATTTTATGGTTGCA 59.314 45.455 0.00 0.00 0.00 4.08
1446 1467 7.560368 AGATATAGGTAATGTAATGGCTCTGC 58.440 38.462 0.00 0.00 0.00 4.26
1661 1693 2.107378 TGCAGGAGGGTAACAATTGTGA 59.893 45.455 12.82 0.38 39.74 3.58
1786 1818 9.213799 GTGATAATTTAGCTAATGAGGAGAAGG 57.786 37.037 7.08 0.00 0.00 3.46
1875 1907 6.405731 CCAAGGACTTTTGTGAATCTGTTCAA 60.406 38.462 0.00 0.00 45.38 2.69
2024 8941 0.403271 ATGGCTGAAGAGGTTGCTGT 59.597 50.000 0.00 0.00 0.00 4.40
2129 9049 4.515028 AGATGATGAAGGCAATCTTGGA 57.485 40.909 0.00 0.00 35.50 3.53
2130 9050 4.462133 AGATGATGAAGGCAATCTTGGAG 58.538 43.478 0.00 0.00 35.50 3.86
2131 9051 3.008835 TGATGAAGGCAATCTTGGAGG 57.991 47.619 0.00 0.00 35.50 4.30
2248 9209 6.245115 TGTTTGTGATGCTAGATGTTGAAG 57.755 37.500 0.00 0.00 0.00 3.02
2448 10260 0.447801 GTGTCATGTTGTCGATGGCC 59.552 55.000 0.00 0.00 0.00 5.36
2450 10262 0.676466 GTCATGTTGTCGATGGCCCA 60.676 55.000 0.00 0.00 0.00 5.36
2503 10319 1.379843 GTTGTCGATGGCCCCCAAT 60.380 57.895 0.00 0.00 36.95 3.16
2535 13850 4.125703 GAGCCTACCTTGAGAATGTCATG 58.874 47.826 0.00 0.00 34.17 3.07
2691 14006 6.469782 ACTTCCTTGTGATTGAAACAACAT 57.530 33.333 0.00 0.00 34.02 2.71
2810 14126 2.387757 ACAAGTCAGGTTTGTTGGCAT 58.612 42.857 0.00 0.00 35.32 4.40
2999 14317 6.913170 ACCAAATGACTGAATGTTATGTCAC 58.087 36.000 0.00 0.00 41.37 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.992349 TGGGCAGATGCTATTATACAGTATAAT 58.008 33.333 23.52 23.52 39.73 1.28
28 29 8.374184 TGGGCAGATGCTATTATACAGTATAA 57.626 34.615 14.25 14.25 41.70 0.98
29 30 7.971368 TGGGCAGATGCTATTATACAGTATA 57.029 36.000 4.59 0.00 41.70 1.47
30 31 6.874278 TGGGCAGATGCTATTATACAGTAT 57.126 37.500 4.59 0.00 41.70 2.12
31 32 6.680148 TTGGGCAGATGCTATTATACAGTA 57.320 37.500 4.59 0.00 41.70 2.74
32 33 5.567037 TTGGGCAGATGCTATTATACAGT 57.433 39.130 4.59 0.00 41.70 3.55
33 34 6.882610 TTTTGGGCAGATGCTATTATACAG 57.117 37.500 4.59 0.00 41.70 2.74
34 35 7.838079 ATTTTTGGGCAGATGCTATTATACA 57.162 32.000 4.59 0.00 41.70 2.29
35 36 8.143835 ACAATTTTTGGGCAGATGCTATTATAC 58.856 33.333 4.59 0.00 41.70 1.47
36 37 8.248904 ACAATTTTTGGGCAGATGCTATTATA 57.751 30.769 4.59 0.00 41.70 0.98
37 38 7.128234 ACAATTTTTGGGCAGATGCTATTAT 57.872 32.000 4.59 0.00 41.70 1.28
38 39 6.543430 ACAATTTTTGGGCAGATGCTATTA 57.457 33.333 4.59 0.00 41.70 0.98
39 40 5.425196 ACAATTTTTGGGCAGATGCTATT 57.575 34.783 4.59 0.00 41.70 1.73
40 41 5.188359 AGAACAATTTTTGGGCAGATGCTAT 59.812 36.000 4.59 0.00 41.70 2.97
41 42 4.527816 AGAACAATTTTTGGGCAGATGCTA 59.472 37.500 4.59 0.00 41.70 3.49
42 43 3.325716 AGAACAATTTTTGGGCAGATGCT 59.674 39.130 4.59 0.00 41.70 3.79
43 44 3.667360 AGAACAATTTTTGGGCAGATGC 58.333 40.909 0.00 0.00 41.14 3.91
44 45 6.146021 GTGTAAGAACAATTTTTGGGCAGATG 59.854 38.462 0.00 0.00 37.36 2.90
45 46 6.183360 TGTGTAAGAACAATTTTTGGGCAGAT 60.183 34.615 0.00 0.00 37.36 2.90
46 47 5.127845 TGTGTAAGAACAATTTTTGGGCAGA 59.872 36.000 0.00 0.00 37.36 4.26
47 48 5.355596 TGTGTAAGAACAATTTTTGGGCAG 58.644 37.500 0.00 0.00 37.36 4.85
48 49 5.344743 TGTGTAAGAACAATTTTTGGGCA 57.655 34.783 0.00 0.00 37.36 5.36
49 50 6.670077 TTTGTGTAAGAACAATTTTTGGGC 57.330 33.333 0.00 0.00 39.68 5.36
50 51 8.034058 TGTTTTGTGTAAGAACAATTTTTGGG 57.966 30.769 0.00 0.00 39.68 4.12
51 52 8.930760 TCTGTTTTGTGTAAGAACAATTTTTGG 58.069 29.630 0.00 0.00 39.68 3.28
54 55 8.655970 GCTTCTGTTTTGTGTAAGAACAATTTT 58.344 29.630 0.00 0.00 39.68 1.82
55 56 8.034804 AGCTTCTGTTTTGTGTAAGAACAATTT 58.965 29.630 0.00 0.00 39.68 1.82
56 57 7.547227 AGCTTCTGTTTTGTGTAAGAACAATT 58.453 30.769 0.00 0.00 39.68 2.32
57 58 7.100458 AGCTTCTGTTTTGTGTAAGAACAAT 57.900 32.000 0.00 0.00 39.68 2.71
58 59 6.509418 AGCTTCTGTTTTGTGTAAGAACAA 57.491 33.333 0.00 0.00 37.36 2.83
59 60 7.618502 TTAGCTTCTGTTTTGTGTAAGAACA 57.381 32.000 0.00 0.00 0.00 3.18
66 67 9.463443 GACAAAATATTAGCTTCTGTTTTGTGT 57.537 29.630 25.99 13.33 44.78 3.72
67 68 8.915654 GGACAAAATATTAGCTTCTGTTTTGTG 58.084 33.333 25.99 11.21 44.78 3.33
68 69 8.637986 TGGACAAAATATTAGCTTCTGTTTTGT 58.362 29.630 23.42 23.42 46.36 2.83
69 70 8.915654 GTGGACAAAATATTAGCTTCTGTTTTG 58.084 33.333 19.45 19.45 40.48 2.44
70 71 7.807907 CGTGGACAAAATATTAGCTTCTGTTTT 59.192 33.333 0.00 0.00 0.00 2.43
71 72 7.174253 TCGTGGACAAAATATTAGCTTCTGTTT 59.826 33.333 0.00 0.00 0.00 2.83
72 73 6.653320 TCGTGGACAAAATATTAGCTTCTGTT 59.347 34.615 0.00 0.00 0.00 3.16
73 74 6.092259 GTCGTGGACAAAATATTAGCTTCTGT 59.908 38.462 0.00 0.00 32.09 3.41
74 75 6.456988 GGTCGTGGACAAAATATTAGCTTCTG 60.457 42.308 0.00 0.00 33.68 3.02
75 76 5.585047 GGTCGTGGACAAAATATTAGCTTCT 59.415 40.000 0.00 0.00 33.68 2.85
76 77 5.353123 TGGTCGTGGACAAAATATTAGCTTC 59.647 40.000 0.00 0.00 33.68 3.86
77 78 5.250200 TGGTCGTGGACAAAATATTAGCTT 58.750 37.500 0.00 0.00 33.68 3.74
78 79 4.839121 TGGTCGTGGACAAAATATTAGCT 58.161 39.130 0.00 0.00 33.68 3.32
79 80 5.554822 TTGGTCGTGGACAAAATATTAGC 57.445 39.130 0.00 0.00 33.68 3.09
82 83 9.364989 CAATATTTTGGTCGTGGACAAAATATT 57.635 29.630 26.32 26.32 43.86 1.28
83 84 7.978975 CCAATATTTTGGTCGTGGACAAAATAT 59.021 33.333 20.80 20.80 46.27 1.28
84 85 7.316640 CCAATATTTTGGTCGTGGACAAAATA 58.683 34.615 18.87 18.87 46.27 1.40
85 86 6.162777 CCAATATTTTGGTCGTGGACAAAAT 58.837 36.000 16.45 16.45 46.27 1.82
86 87 5.533482 CCAATATTTTGGTCGTGGACAAAA 58.467 37.500 6.76 5.22 46.27 2.44
87 88 5.127693 CCAATATTTTGGTCGTGGACAAA 57.872 39.130 6.76 0.00 46.27 2.83
88 89 4.775058 CCAATATTTTGGTCGTGGACAA 57.225 40.909 6.76 0.00 46.27 3.18
99 100 6.171921 TCAAATGAACCCTGCCAATATTTTG 58.828 36.000 0.00 0.00 0.00 2.44
100 101 6.371595 TCAAATGAACCCTGCCAATATTTT 57.628 33.333 0.00 0.00 0.00 1.82
101 102 6.564557 ATCAAATGAACCCTGCCAATATTT 57.435 33.333 0.00 0.00 0.00 1.40
102 103 7.564660 TCTTATCAAATGAACCCTGCCAATATT 59.435 33.333 0.00 0.00 0.00 1.28
103 104 7.068702 TCTTATCAAATGAACCCTGCCAATAT 58.931 34.615 0.00 0.00 0.00 1.28
104 105 6.430864 TCTTATCAAATGAACCCTGCCAATA 58.569 36.000 0.00 0.00 0.00 1.90
105 106 5.271598 TCTTATCAAATGAACCCTGCCAAT 58.728 37.500 0.00 0.00 0.00 3.16
106 107 4.671831 TCTTATCAAATGAACCCTGCCAA 58.328 39.130 0.00 0.00 0.00 4.52
107 108 4.272489 CTCTTATCAAATGAACCCTGCCA 58.728 43.478 0.00 0.00 0.00 4.92
108 109 3.067320 GCTCTTATCAAATGAACCCTGCC 59.933 47.826 0.00 0.00 0.00 4.85
109 110 3.696051 TGCTCTTATCAAATGAACCCTGC 59.304 43.478 0.00 0.00 0.00 4.85
110 111 5.826737 AGATGCTCTTATCAAATGAACCCTG 59.173 40.000 0.00 0.00 0.00 4.45
111 112 6.011122 AGATGCTCTTATCAAATGAACCCT 57.989 37.500 0.00 0.00 0.00 4.34
112 113 7.992754 ATAGATGCTCTTATCAAATGAACCC 57.007 36.000 0.00 0.00 0.00 4.11
113 114 8.663911 GCTATAGATGCTCTTATCAAATGAACC 58.336 37.037 3.21 0.00 0.00 3.62
114 115 8.663911 GGCTATAGATGCTCTTATCAAATGAAC 58.336 37.037 3.21 0.00 0.00 3.18
115 116 7.547019 CGGCTATAGATGCTCTTATCAAATGAA 59.453 37.037 3.21 0.00 0.00 2.57
116 117 7.038048 CGGCTATAGATGCTCTTATCAAATGA 58.962 38.462 3.21 0.00 0.00 2.57
117 118 6.257411 CCGGCTATAGATGCTCTTATCAAATG 59.743 42.308 3.21 0.00 0.00 2.32
118 119 6.344500 CCGGCTATAGATGCTCTTATCAAAT 58.656 40.000 3.21 0.00 0.00 2.32
119 120 5.337571 CCCGGCTATAGATGCTCTTATCAAA 60.338 44.000 3.21 0.00 0.00 2.69
120 121 4.160439 CCCGGCTATAGATGCTCTTATCAA 59.840 45.833 3.21 0.00 0.00 2.57
121 122 3.701542 CCCGGCTATAGATGCTCTTATCA 59.298 47.826 3.21 0.00 0.00 2.15
122 123 3.491792 GCCCGGCTATAGATGCTCTTATC 60.492 52.174 3.21 0.00 0.00 1.75
123 124 2.432510 GCCCGGCTATAGATGCTCTTAT 59.567 50.000 3.21 0.00 0.00 1.73
124 125 1.825474 GCCCGGCTATAGATGCTCTTA 59.175 52.381 3.21 0.00 0.00 2.10
125 126 0.610687 GCCCGGCTATAGATGCTCTT 59.389 55.000 3.21 0.00 0.00 2.85
126 127 1.599606 CGCCCGGCTATAGATGCTCT 61.600 60.000 8.05 0.00 0.00 4.09
127 128 1.153745 CGCCCGGCTATAGATGCTC 60.154 63.158 8.05 0.00 0.00 4.26
128 129 2.973899 CGCCCGGCTATAGATGCT 59.026 61.111 8.05 0.00 0.00 3.79
129 130 2.815647 GCGCCCGGCTATAGATGC 60.816 66.667 8.05 0.00 39.11 3.91
130 131 2.125512 GGCGCCCGGCTATAGATG 60.126 66.667 18.11 0.00 42.94 2.90
141 142 4.660938 AGGTGGTTTGAGGCGCCC 62.661 66.667 26.15 15.80 0.00 6.13
142 143 2.180159 TAGAGGTGGTTTGAGGCGCC 62.180 60.000 21.89 21.89 0.00 6.53
143 144 0.107654 ATAGAGGTGGTTTGAGGCGC 60.108 55.000 0.00 0.00 0.00 6.53
144 145 3.181465 ACATATAGAGGTGGTTTGAGGCG 60.181 47.826 0.00 0.00 0.00 5.52
145 146 4.381411 GACATATAGAGGTGGTTTGAGGC 58.619 47.826 0.00 0.00 0.00 4.70
146 147 4.501571 CGGACATATAGAGGTGGTTTGAGG 60.502 50.000 0.00 0.00 0.00 3.86
147 148 4.501571 CCGGACATATAGAGGTGGTTTGAG 60.502 50.000 0.00 0.00 0.00 3.02
148 149 3.386726 CCGGACATATAGAGGTGGTTTGA 59.613 47.826 0.00 0.00 0.00 2.69
149 150 3.386726 TCCGGACATATAGAGGTGGTTTG 59.613 47.826 0.00 0.00 0.00 2.93
150 151 3.649843 TCCGGACATATAGAGGTGGTTT 58.350 45.455 0.00 0.00 0.00 3.27
151 152 3.323774 TCCGGACATATAGAGGTGGTT 57.676 47.619 0.00 0.00 0.00 3.67
152 153 3.544698 ATCCGGACATATAGAGGTGGT 57.455 47.619 6.12 0.00 0.00 4.16
153 154 4.856509 TCTATCCGGACATATAGAGGTGG 58.143 47.826 6.12 0.00 32.32 4.61
154 155 5.300539 CCATCTATCCGGACATATAGAGGTG 59.699 48.000 18.29 12.37 37.94 4.00
155 156 5.193930 TCCATCTATCCGGACATATAGAGGT 59.806 44.000 18.29 2.97 37.94 3.85
156 157 5.696030 TCCATCTATCCGGACATATAGAGG 58.304 45.833 6.12 11.92 37.94 3.69
157 158 6.238511 CGTTCCATCTATCCGGACATATAGAG 60.239 46.154 6.12 4.55 37.94 2.43
158 159 5.589050 CGTTCCATCTATCCGGACATATAGA 59.411 44.000 6.12 10.97 38.66 1.98
159 160 5.221067 CCGTTCCATCTATCCGGACATATAG 60.221 48.000 6.12 4.63 41.08 1.31
160 161 4.643334 CCGTTCCATCTATCCGGACATATA 59.357 45.833 6.12 0.00 41.08 0.86
161 162 3.447586 CCGTTCCATCTATCCGGACATAT 59.552 47.826 6.12 0.00 41.08 1.78
162 163 2.823747 CCGTTCCATCTATCCGGACATA 59.176 50.000 6.12 0.00 41.08 2.29
163 164 1.618837 CCGTTCCATCTATCCGGACAT 59.381 52.381 6.12 0.00 41.08 3.06
164 165 1.037493 CCGTTCCATCTATCCGGACA 58.963 55.000 6.12 0.00 41.08 4.02
165 166 1.000496 GACCGTTCCATCTATCCGGAC 60.000 57.143 6.12 0.00 41.08 4.79
166 167 1.325355 GACCGTTCCATCTATCCGGA 58.675 55.000 6.61 6.61 41.08 5.14
167 168 1.037493 TGACCGTTCCATCTATCCGG 58.963 55.000 0.00 0.00 44.06 5.14
168 169 1.681793 AGTGACCGTTCCATCTATCCG 59.318 52.381 0.00 0.00 0.00 4.18
169 170 2.224066 CCAGTGACCGTTCCATCTATCC 60.224 54.545 0.00 0.00 0.00 2.59
170 171 2.803492 GCCAGTGACCGTTCCATCTATC 60.803 54.545 0.00 0.00 0.00 2.08
171 172 1.139058 GCCAGTGACCGTTCCATCTAT 59.861 52.381 0.00 0.00 0.00 1.98
172 173 0.535335 GCCAGTGACCGTTCCATCTA 59.465 55.000 0.00 0.00 0.00 1.98
173 174 1.296715 GCCAGTGACCGTTCCATCT 59.703 57.895 0.00 0.00 0.00 2.90
174 175 1.745489 GGCCAGTGACCGTTCCATC 60.745 63.158 0.00 0.00 0.00 3.51
175 176 1.852157 ATGGCCAGTGACCGTTCCAT 61.852 55.000 13.05 0.00 0.00 3.41
176 177 1.195442 TATGGCCAGTGACCGTTCCA 61.195 55.000 13.05 0.00 0.00 3.53
177 178 0.035820 TTATGGCCAGTGACCGTTCC 60.036 55.000 13.05 0.00 0.00 3.62
178 179 1.816074 TTTATGGCCAGTGACCGTTC 58.184 50.000 13.05 0.00 0.00 3.95
179 180 2.279935 TTTTATGGCCAGTGACCGTT 57.720 45.000 13.05 0.00 0.00 4.44
180 181 2.279935 TTTTTATGGCCAGTGACCGT 57.720 45.000 13.05 0.00 0.00 4.83
205 206 0.526211 TGAGGTGTCCGTCTTGATCG 59.474 55.000 0.00 0.00 0.00 3.69
206 207 2.737252 GTTTGAGGTGTCCGTCTTGATC 59.263 50.000 0.00 0.00 0.00 2.92
207 208 2.550208 GGTTTGAGGTGTCCGTCTTGAT 60.550 50.000 0.00 0.00 0.00 2.57
208 209 1.202604 GGTTTGAGGTGTCCGTCTTGA 60.203 52.381 0.00 0.00 0.00 3.02
209 210 1.226746 GGTTTGAGGTGTCCGTCTTG 58.773 55.000 0.00 0.00 0.00 3.02
210 211 0.249741 CGGTTTGAGGTGTCCGTCTT 60.250 55.000 0.00 0.00 38.45 3.01
211 212 1.366366 CGGTTTGAGGTGTCCGTCT 59.634 57.895 0.00 0.00 38.45 4.18
212 213 1.666872 CCGGTTTGAGGTGTCCGTC 60.667 63.158 0.00 0.00 41.17 4.79
213 214 2.373434 GACCGGTTTGAGGTGTCCGT 62.373 60.000 9.42 0.00 43.01 4.69
214 215 1.666872 GACCGGTTTGAGGTGTCCG 60.667 63.158 9.42 0.00 43.01 4.79
215 216 0.108019 AAGACCGGTTTGAGGTGTCC 59.892 55.000 9.42 0.00 43.01 4.02
216 217 2.825861 TAAGACCGGTTTGAGGTGTC 57.174 50.000 9.42 0.00 43.01 3.67
217 218 3.208594 GTTTAAGACCGGTTTGAGGTGT 58.791 45.455 9.42 0.00 43.01 4.16
218 219 2.222445 CGTTTAAGACCGGTTTGAGGTG 59.778 50.000 9.42 0.00 43.01 4.00
219 220 2.158914 ACGTTTAAGACCGGTTTGAGGT 60.159 45.455 9.42 2.25 46.16 3.85
220 221 2.477754 GACGTTTAAGACCGGTTTGAGG 59.522 50.000 9.42 1.58 0.00 3.86
221 222 2.477754 GGACGTTTAAGACCGGTTTGAG 59.522 50.000 9.42 0.00 0.00 3.02
222 223 2.482864 GGACGTTTAAGACCGGTTTGA 58.517 47.619 9.42 0.00 0.00 2.69
223 224 1.192980 CGGACGTTTAAGACCGGTTTG 59.807 52.381 9.42 0.00 43.60 2.93
224 225 1.501169 CGGACGTTTAAGACCGGTTT 58.499 50.000 9.42 0.00 43.60 3.27
225 226 3.199764 CGGACGTTTAAGACCGGTT 57.800 52.632 9.42 0.00 43.60 4.44
226 227 4.972591 CGGACGTTTAAGACCGGT 57.027 55.556 6.92 6.92 43.60 5.28
228 229 2.096442 GCCCGGACGTTTAAGACCG 61.096 63.158 0.73 4.25 46.05 4.79
229 230 1.017701 CAGCCCGGACGTTTAAGACC 61.018 60.000 0.73 0.00 0.00 3.85
230 231 0.037975 TCAGCCCGGACGTTTAAGAC 60.038 55.000 0.73 0.00 0.00 3.01
231 232 0.899720 ATCAGCCCGGACGTTTAAGA 59.100 50.000 0.73 0.00 0.00 2.10
232 233 1.287425 GATCAGCCCGGACGTTTAAG 58.713 55.000 0.73 0.00 0.00 1.85
233 234 0.609151 TGATCAGCCCGGACGTTTAA 59.391 50.000 0.73 0.00 0.00 1.52
234 235 0.828022 ATGATCAGCCCGGACGTTTA 59.172 50.000 0.73 0.00 0.00 2.01
235 236 0.462047 GATGATCAGCCCGGACGTTT 60.462 55.000 0.73 0.00 0.00 3.60
236 237 1.144057 GATGATCAGCCCGGACGTT 59.856 57.895 0.73 0.00 0.00 3.99
237 238 1.402896 ATGATGATCAGCCCGGACGT 61.403 55.000 8.78 0.00 0.00 4.34
238 239 0.668706 GATGATGATCAGCCCGGACG 60.669 60.000 8.78 0.00 0.00 4.79
239 240 0.321122 GGATGATGATCAGCCCGGAC 60.321 60.000 18.57 0.00 46.68 4.79
240 241 2.061220 GGATGATGATCAGCCCGGA 58.939 57.895 18.57 0.00 46.68 5.14
241 242 4.709840 GGATGATGATCAGCCCGG 57.290 61.111 18.57 0.00 46.68 5.73
245 246 4.163649 TGGATATGAGGGATGATGATCAGC 59.836 45.833 3.40 3.40 30.81 4.26
246 247 5.685337 GCTGGATATGAGGGATGATGATCAG 60.685 48.000 0.09 0.00 0.00 2.90
247 248 4.163649 GCTGGATATGAGGGATGATGATCA 59.836 45.833 0.00 0.00 0.00 2.92
248 249 4.444591 GGCTGGATATGAGGGATGATGATC 60.445 50.000 0.00 0.00 0.00 2.92
249 250 3.458857 GGCTGGATATGAGGGATGATGAT 59.541 47.826 0.00 0.00 0.00 2.45
250 251 2.842496 GGCTGGATATGAGGGATGATGA 59.158 50.000 0.00 0.00 0.00 2.92
251 252 2.092538 GGGCTGGATATGAGGGATGATG 60.093 54.545 0.00 0.00 0.00 3.07
252 253 2.203584 GGGCTGGATATGAGGGATGAT 58.796 52.381 0.00 0.00 0.00 2.45
253 254 1.132430 TGGGCTGGATATGAGGGATGA 60.132 52.381 0.00 0.00 0.00 2.92
254 255 1.365293 TGGGCTGGATATGAGGGATG 58.635 55.000 0.00 0.00 0.00 3.51
255 256 2.138535 TTGGGCTGGATATGAGGGAT 57.861 50.000 0.00 0.00 0.00 3.85
256 257 2.138535 ATTGGGCTGGATATGAGGGA 57.861 50.000 0.00 0.00 0.00 4.20
257 258 2.377869 AGAATTGGGCTGGATATGAGGG 59.622 50.000 0.00 0.00 0.00 4.30
258 259 3.418995 CAGAATTGGGCTGGATATGAGG 58.581 50.000 0.00 0.00 0.00 3.86
271 272 2.491455 CCCATATCCACCCCAGAATTGG 60.491 54.545 0.00 0.00 44.60 3.16
272 273 2.491455 CCCCATATCCACCCCAGAATTG 60.491 54.545 0.00 0.00 0.00 2.32
273 274 1.788915 CCCCATATCCACCCCAGAATT 59.211 52.381 0.00 0.00 0.00 2.17
274 275 1.460218 CCCCATATCCACCCCAGAAT 58.540 55.000 0.00 0.00 0.00 2.40
275 276 1.360393 GCCCCATATCCACCCCAGAA 61.360 60.000 0.00 0.00 0.00 3.02
276 277 1.774217 GCCCCATATCCACCCCAGA 60.774 63.158 0.00 0.00 0.00 3.86
277 278 1.775877 AGCCCCATATCCACCCCAG 60.776 63.158 0.00 0.00 0.00 4.45
278 279 2.084300 CAGCCCCATATCCACCCCA 61.084 63.158 0.00 0.00 0.00 4.96
279 280 2.069165 GACAGCCCCATATCCACCCC 62.069 65.000 0.00 0.00 0.00 4.95
280 281 1.456287 GACAGCCCCATATCCACCC 59.544 63.158 0.00 0.00 0.00 4.61
281 282 1.456287 GGACAGCCCCATATCCACC 59.544 63.158 0.00 0.00 0.00 4.61
282 283 1.071471 CGGACAGCCCCATATCCAC 59.929 63.158 0.00 0.00 0.00 4.02
283 284 2.146724 CCGGACAGCCCCATATCCA 61.147 63.158 0.00 0.00 0.00 3.41
284 285 2.750350 CCGGACAGCCCCATATCC 59.250 66.667 0.00 0.00 0.00 2.59
285 286 2.147387 ACCCGGACAGCCCCATATC 61.147 63.158 0.73 0.00 0.00 1.63
286 287 2.039831 ACCCGGACAGCCCCATAT 60.040 61.111 0.73 0.00 0.00 1.78
287 288 3.087253 CACCCGGACAGCCCCATA 61.087 66.667 0.73 0.00 0.00 2.74
294 295 4.742201 CTGGACGCACCCGGACAG 62.742 72.222 0.73 0.00 39.22 3.51
306 307 2.202756 GGATCCGACGTGCTGGAC 60.203 66.667 0.00 0.00 37.02 4.02
307 308 3.822192 CGGATCCGACGTGCTGGA 61.822 66.667 30.62 0.00 42.83 3.86
308 309 4.873129 CCGGATCCGACGTGCTGG 62.873 72.222 35.42 12.07 42.83 4.85
318 319 4.301027 CTAGCGTGGGCCGGATCC 62.301 72.222 5.05 6.46 41.24 3.36
319 320 4.971125 GCTAGCGTGGGCCGGATC 62.971 72.222 5.05 0.00 41.24 3.36
325 326 2.417936 GAGTAGGCTAGCGTGGGC 59.582 66.667 19.87 9.74 40.37 5.36
326 327 1.173444 ATCGAGTAGGCTAGCGTGGG 61.173 60.000 19.87 6.38 0.00 4.61
327 328 0.238817 GATCGAGTAGGCTAGCGTGG 59.761 60.000 19.87 6.71 0.00 4.94
328 329 0.238817 GGATCGAGTAGGCTAGCGTG 59.761 60.000 19.87 3.22 0.00 5.34
329 330 1.229315 CGGATCGAGTAGGCTAGCGT 61.229 60.000 15.22 15.22 0.00 5.07
330 331 0.949588 TCGGATCGAGTAGGCTAGCG 60.950 60.000 9.00 9.69 0.00 4.26
331 332 0.518195 GTCGGATCGAGTAGGCTAGC 59.482 60.000 6.04 6.04 36.23 3.42
332 333 1.880271 TGTCGGATCGAGTAGGCTAG 58.120 55.000 0.00 0.00 36.23 3.42
333 334 2.563261 ATGTCGGATCGAGTAGGCTA 57.437 50.000 0.00 0.00 36.23 3.93
334 335 2.563261 TATGTCGGATCGAGTAGGCT 57.437 50.000 0.00 0.00 36.23 4.58
335 336 6.804770 ATATATATGTCGGATCGAGTAGGC 57.195 41.667 0.00 0.00 36.23 3.93
338 339 9.702494 ACGAATATATATATGTCGGATCGAGTA 57.298 33.333 24.72 0.00 36.23 2.59
339 340 8.604640 ACGAATATATATATGTCGGATCGAGT 57.395 34.615 24.72 9.18 36.23 4.18
340 341 9.531412 GAACGAATATATATATGTCGGATCGAG 57.469 37.037 24.72 7.28 36.23 4.04
341 342 9.269453 AGAACGAATATATATATGTCGGATCGA 57.731 33.333 24.72 0.00 0.00 3.59
342 343 9.531412 GAGAACGAATATATATATGTCGGATCG 57.469 37.037 24.72 20.73 0.00 3.69
346 347 9.613957 GGATGAGAACGAATATATATATGTCGG 57.386 37.037 24.72 15.28 0.00 4.79
347 348 9.319223 CGGATGAGAACGAATATATATATGTCG 57.681 37.037 22.17 22.17 0.00 4.35
348 349 9.119329 GCGGATGAGAACGAATATATATATGTC 57.881 37.037 6.00 5.69 0.00 3.06
349 350 8.851145 AGCGGATGAGAACGAATATATATATGT 58.149 33.333 6.00 0.00 0.00 2.29
350 351 9.335891 GAGCGGATGAGAACGAATATATATATG 57.664 37.037 6.00 0.00 0.00 1.78
351 352 8.516234 GGAGCGGATGAGAACGAATATATATAT 58.484 37.037 0.00 0.00 0.00 0.86
352 353 7.040617 GGGAGCGGATGAGAACGAATATATATA 60.041 40.741 0.00 0.00 0.00 0.86
353 354 6.239064 GGGAGCGGATGAGAACGAATATATAT 60.239 42.308 0.00 0.00 0.00 0.86
354 355 5.067413 GGGAGCGGATGAGAACGAATATATA 59.933 44.000 0.00 0.00 0.00 0.86
355 356 4.142138 GGGAGCGGATGAGAACGAATATAT 60.142 45.833 0.00 0.00 0.00 0.86
356 357 3.192844 GGGAGCGGATGAGAACGAATATA 59.807 47.826 0.00 0.00 0.00 0.86
357 358 2.028930 GGGAGCGGATGAGAACGAATAT 60.029 50.000 0.00 0.00 0.00 1.28
358 359 1.340248 GGGAGCGGATGAGAACGAATA 59.660 52.381 0.00 0.00 0.00 1.75
359 360 0.105039 GGGAGCGGATGAGAACGAAT 59.895 55.000 0.00 0.00 0.00 3.34
360 361 1.515954 GGGAGCGGATGAGAACGAA 59.484 57.895 0.00 0.00 0.00 3.85
361 362 2.423898 GGGGAGCGGATGAGAACGA 61.424 63.158 0.00 0.00 0.00 3.85
362 363 2.107141 GGGGAGCGGATGAGAACG 59.893 66.667 0.00 0.00 0.00 3.95
363 364 2.107141 CGGGGAGCGGATGAGAAC 59.893 66.667 0.00 0.00 0.00 3.01
364 365 3.154473 CCGGGGAGCGGATGAGAA 61.154 66.667 0.00 0.00 0.00 2.87
365 366 4.137615 TCCGGGGAGCGGATGAGA 62.138 66.667 0.00 0.00 0.00 3.27
366 367 3.917760 GTCCGGGGAGCGGATGAG 61.918 72.222 0.00 0.00 37.88 2.90
374 375 3.629035 TAGGGGTTGGTCCGGGGAG 62.629 68.421 0.00 0.00 37.00 4.30
375 376 3.613674 TAGGGGTTGGTCCGGGGA 61.614 66.667 0.00 0.00 37.00 4.81
376 377 3.087906 CTAGGGGTTGGTCCGGGG 61.088 72.222 0.00 0.00 37.00 5.73
377 378 2.285144 ACTAGGGGTTGGTCCGGG 60.285 66.667 0.00 0.00 37.00 5.73
378 379 1.611261 TGACTAGGGGTTGGTCCGG 60.611 63.158 0.00 0.00 36.52 5.14
379 380 0.903454 AGTGACTAGGGGTTGGTCCG 60.903 60.000 0.00 0.00 36.52 4.79
380 381 0.903236 GAGTGACTAGGGGTTGGTCC 59.097 60.000 0.00 0.00 36.52 4.46
381 382 0.903236 GGAGTGACTAGGGGTTGGTC 59.097 60.000 0.00 0.00 37.76 4.02
382 383 0.546988 GGGAGTGACTAGGGGTTGGT 60.547 60.000 0.00 0.00 0.00 3.67
383 384 1.272554 GGGGAGTGACTAGGGGTTGG 61.273 65.000 0.00 0.00 0.00 3.77
384 385 0.252742 AGGGGAGTGACTAGGGGTTG 60.253 60.000 0.00 0.00 0.00 3.77
385 386 0.042881 GAGGGGAGTGACTAGGGGTT 59.957 60.000 0.00 0.00 0.00 4.11
386 387 1.704704 GAGGGGAGTGACTAGGGGT 59.295 63.158 0.00 0.00 0.00 4.95
387 388 1.075151 GGAGGGGAGTGACTAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
388 389 1.455959 CGGAGGGGAGTGACTAGGG 60.456 68.421 0.00 0.00 0.00 3.53
389 390 2.128507 GCGGAGGGGAGTGACTAGG 61.129 68.421 0.00 0.00 0.00 3.02
390 391 1.076632 AGCGGAGGGGAGTGACTAG 60.077 63.158 0.00 0.00 0.00 2.57
391 392 1.076923 GAGCGGAGGGGAGTGACTA 60.077 63.158 0.00 0.00 0.00 2.59
392 393 2.363147 GAGCGGAGGGGAGTGACT 60.363 66.667 0.00 0.00 0.00 3.41
393 394 3.462678 GGAGCGGAGGGGAGTGAC 61.463 72.222 0.00 0.00 0.00 3.67
397 398 4.824515 AGTCGGAGCGGAGGGGAG 62.825 72.222 0.00 0.00 0.00 4.30
398 399 4.816984 GAGTCGGAGCGGAGGGGA 62.817 72.222 0.00 0.00 0.00 4.81
401 402 3.068691 TTGGAGTCGGAGCGGAGG 61.069 66.667 0.00 0.00 0.00 4.30
402 403 2.492090 CTTGGAGTCGGAGCGGAG 59.508 66.667 0.00 0.00 0.00 4.63
403 404 3.760035 GCTTGGAGTCGGAGCGGA 61.760 66.667 1.25 0.00 0.00 5.54
404 405 3.708220 GAGCTTGGAGTCGGAGCGG 62.708 68.421 9.79 0.00 41.19 5.52
405 406 2.202676 GAGCTTGGAGTCGGAGCG 60.203 66.667 9.79 0.00 41.19 5.03
406 407 1.965754 ATGGAGCTTGGAGTCGGAGC 61.966 60.000 7.98 7.98 36.68 4.70
407 408 0.539051 AATGGAGCTTGGAGTCGGAG 59.461 55.000 0.00 0.00 0.00 4.63
408 409 0.537188 GAATGGAGCTTGGAGTCGGA 59.463 55.000 0.00 0.00 0.00 4.55
409 410 0.539051 AGAATGGAGCTTGGAGTCGG 59.461 55.000 0.00 0.00 0.00 4.79
410 411 1.205655 TCAGAATGGAGCTTGGAGTCG 59.794 52.381 0.00 0.00 36.16 4.18
411 412 2.626840 GTCAGAATGGAGCTTGGAGTC 58.373 52.381 0.00 0.00 36.16 3.36
412 413 1.066573 CGTCAGAATGGAGCTTGGAGT 60.067 52.381 0.00 0.00 36.16 3.85
413 414 1.205655 TCGTCAGAATGGAGCTTGGAG 59.794 52.381 0.00 0.00 36.16 3.86
414 415 1.266178 TCGTCAGAATGGAGCTTGGA 58.734 50.000 0.00 0.00 36.16 3.53
415 416 1.734465 GTTCGTCAGAATGGAGCTTGG 59.266 52.381 0.00 0.00 38.80 3.61
416 417 2.670414 GAGTTCGTCAGAATGGAGCTTG 59.330 50.000 0.00 0.00 38.80 4.01
417 418 2.564947 AGAGTTCGTCAGAATGGAGCTT 59.435 45.455 0.00 0.00 38.80 3.74
418 419 2.094286 CAGAGTTCGTCAGAATGGAGCT 60.094 50.000 0.00 0.00 38.80 4.09
419 420 2.266554 CAGAGTTCGTCAGAATGGAGC 58.733 52.381 0.00 0.00 38.80 4.70
420 421 2.886081 CCAGAGTTCGTCAGAATGGAG 58.114 52.381 0.00 0.00 36.58 3.86
421 422 1.066858 GCCAGAGTTCGTCAGAATGGA 60.067 52.381 4.19 0.00 36.58 3.41
422 423 1.363744 GCCAGAGTTCGTCAGAATGG 58.636 55.000 0.00 0.00 38.80 3.16
423 424 1.066573 AGGCCAGAGTTCGTCAGAATG 60.067 52.381 5.01 0.00 38.80 2.67
424 425 1.270907 AGGCCAGAGTTCGTCAGAAT 58.729 50.000 5.01 0.00 38.80 2.40
425 426 1.000955 GAAGGCCAGAGTTCGTCAGAA 59.999 52.381 5.01 0.00 0.00 3.02
426 427 0.603569 GAAGGCCAGAGTTCGTCAGA 59.396 55.000 5.01 0.00 0.00 3.27
427 428 0.605589 AGAAGGCCAGAGTTCGTCAG 59.394 55.000 5.01 0.00 0.00 3.51
428 429 0.603569 GAGAAGGCCAGAGTTCGTCA 59.396 55.000 5.01 0.00 0.00 4.35
429 430 0.108567 GGAGAAGGCCAGAGTTCGTC 60.109 60.000 5.01 0.00 0.00 4.20
430 431 1.878656 CGGAGAAGGCCAGAGTTCGT 61.879 60.000 5.01 0.00 0.00 3.85
431 432 1.153745 CGGAGAAGGCCAGAGTTCG 60.154 63.158 5.01 0.00 0.00 3.95
432 433 1.219393 CCGGAGAAGGCCAGAGTTC 59.781 63.158 5.01 0.00 0.00 3.01
433 434 3.393360 CCGGAGAAGGCCAGAGTT 58.607 61.111 5.01 0.00 0.00 3.01
441 442 4.473520 ACGCCATGCCGGAGAAGG 62.474 66.667 5.05 1.17 38.12 3.46
442 443 2.892425 GACGCCATGCCGGAGAAG 60.892 66.667 5.05 0.00 38.12 2.85
443 444 4.467084 GGACGCCATGCCGGAGAA 62.467 66.667 5.05 0.00 38.12 2.87
449 450 3.797507 ATCCATGGGACGCCATGCC 62.798 63.158 13.02 0.00 44.25 4.40
450 451 1.829533 AATCCATGGGACGCCATGC 60.830 57.895 13.02 0.00 44.25 4.06
451 452 0.466007 TCAATCCATGGGACGCCATG 60.466 55.000 13.02 13.46 44.93 3.66
452 453 0.179009 CTCAATCCATGGGACGCCAT 60.179 55.000 13.02 0.00 32.98 4.40
453 454 1.224315 CTCAATCCATGGGACGCCA 59.776 57.895 13.02 0.00 32.98 5.69
454 455 0.468226 TACTCAATCCATGGGACGCC 59.532 55.000 13.02 0.00 32.98 5.68
455 456 1.139058 AGTACTCAATCCATGGGACGC 59.861 52.381 13.02 0.00 32.98 5.19
456 457 2.224066 GGAGTACTCAATCCATGGGACG 60.224 54.545 23.91 0.00 32.98 4.79
457 458 2.771943 TGGAGTACTCAATCCATGGGAC 59.228 50.000 23.91 3.10 40.70 4.46
458 459 3.129262 TGGAGTACTCAATCCATGGGA 57.871 47.619 23.91 0.00 40.70 4.37
464 465 2.224402 GGCCTCATGGAGTACTCAATCC 60.224 54.545 23.91 11.88 36.05 3.01
465 466 2.546795 CGGCCTCATGGAGTACTCAATC 60.547 54.545 23.91 7.86 34.57 2.67
466 467 1.414181 CGGCCTCATGGAGTACTCAAT 59.586 52.381 23.91 16.07 34.57 2.57
467 468 0.824109 CGGCCTCATGGAGTACTCAA 59.176 55.000 23.91 14.25 34.57 3.02
468 469 0.033503 TCGGCCTCATGGAGTACTCA 60.034 55.000 23.91 10.85 34.57 3.41
469 470 0.671251 CTCGGCCTCATGGAGTACTC 59.329 60.000 14.87 14.87 34.57 2.59
470 471 0.757188 CCTCGGCCTCATGGAGTACT 60.757 60.000 0.00 0.00 34.57 2.73
471 472 0.755698 TCCTCGGCCTCATGGAGTAC 60.756 60.000 0.00 0.00 34.57 2.73
472 473 0.468214 CTCCTCGGCCTCATGGAGTA 60.468 60.000 16.92 0.00 40.69 2.59
473 474 1.760086 CTCCTCGGCCTCATGGAGT 60.760 63.158 16.92 0.00 40.69 3.85
474 475 2.506061 CCTCCTCGGCCTCATGGAG 61.506 68.421 17.75 17.75 44.06 3.86
475 476 2.444706 CCTCCTCGGCCTCATGGA 60.445 66.667 0.00 1.80 34.57 3.41
476 477 2.444706 TCCTCCTCGGCCTCATGG 60.445 66.667 0.00 0.00 0.00 3.66
477 478 0.831288 ATCTCCTCCTCGGCCTCATG 60.831 60.000 0.00 0.00 0.00 3.07
478 479 0.831288 CATCTCCTCCTCGGCCTCAT 60.831 60.000 0.00 0.00 0.00 2.90
479 480 1.456518 CATCTCCTCCTCGGCCTCA 60.457 63.158 0.00 0.00 0.00 3.86
480 481 1.152652 TCATCTCCTCCTCGGCCTC 60.153 63.158 0.00 0.00 0.00 4.70
481 482 1.456705 GTCATCTCCTCCTCGGCCT 60.457 63.158 0.00 0.00 0.00 5.19
482 483 2.503382 GGTCATCTCCTCCTCGGCC 61.503 68.421 0.00 0.00 0.00 6.13
483 484 1.118356 ATGGTCATCTCCTCCTCGGC 61.118 60.000 0.00 0.00 0.00 5.54
484 485 1.342819 GAATGGTCATCTCCTCCTCGG 59.657 57.143 0.00 0.00 0.00 4.63
485 486 1.000827 CGAATGGTCATCTCCTCCTCG 60.001 57.143 0.00 0.00 0.00 4.63
486 487 1.270041 GCGAATGGTCATCTCCTCCTC 60.270 57.143 0.00 0.00 0.00 3.71
487 488 0.755686 GCGAATGGTCATCTCCTCCT 59.244 55.000 0.00 0.00 0.00 3.69
488 489 0.465705 TGCGAATGGTCATCTCCTCC 59.534 55.000 0.00 0.00 0.00 4.30
489 490 2.540265 ATGCGAATGGTCATCTCCTC 57.460 50.000 0.00 0.00 0.00 3.71
490 491 3.733337 GTAATGCGAATGGTCATCTCCT 58.267 45.455 0.00 0.00 0.00 3.69
491 492 2.476619 CGTAATGCGAATGGTCATCTCC 59.523 50.000 0.00 0.00 44.77 3.71
492 493 2.096713 GCGTAATGCGAATGGTCATCTC 60.097 50.000 0.00 0.00 44.77 2.75
493 494 1.867233 GCGTAATGCGAATGGTCATCT 59.133 47.619 0.00 0.00 44.77 2.90
494 495 2.300623 GCGTAATGCGAATGGTCATC 57.699 50.000 0.00 0.00 44.77 2.92
513 514 4.554363 CTAGCGGACACGGCGGAG 62.554 72.222 13.24 5.87 41.36 4.63
516 517 4.554363 CTCCTAGCGGACACGGCG 62.554 72.222 4.80 4.80 41.36 6.46
517 518 2.707849 TTCTCCTAGCGGACACGGC 61.708 63.158 0.00 0.00 41.36 5.68
518 519 1.139095 GTTCTCCTAGCGGACACGG 59.861 63.158 0.00 0.00 41.36 4.94
519 520 1.226323 CGTTCTCCTAGCGGACACG 60.226 63.158 0.00 0.00 44.63 4.49
520 521 1.516603 GCGTTCTCCTAGCGGACAC 60.517 63.158 0.00 0.00 34.92 3.67
521 522 2.707849 GGCGTTCTCCTAGCGGACA 61.708 63.158 0.00 0.00 34.92 4.02
522 523 2.104530 GGCGTTCTCCTAGCGGAC 59.895 66.667 0.00 0.00 34.92 4.79
523 524 3.145551 GGGCGTTCTCCTAGCGGA 61.146 66.667 0.00 0.00 37.82 5.54
524 525 4.570663 CGGGCGTTCTCCTAGCGG 62.571 72.222 0.00 0.00 31.63 5.52
525 526 3.515286 TCGGGCGTTCTCCTAGCG 61.515 66.667 0.00 0.00 34.52 4.26
526 527 2.104530 GTCGGGCGTTCTCCTAGC 59.895 66.667 0.00 0.00 0.00 3.42
527 528 1.433879 CTGTCGGGCGTTCTCCTAG 59.566 63.158 0.00 0.00 0.00 3.02
528 529 2.707849 GCTGTCGGGCGTTCTCCTA 61.708 63.158 0.00 0.00 0.00 2.94
529 530 4.070552 GCTGTCGGGCGTTCTCCT 62.071 66.667 0.00 0.00 0.00 3.69
540 541 2.543687 ATCGAGTCCAACCGCTGTCG 62.544 60.000 0.00 0.00 0.00 4.35
541 542 0.802607 GATCGAGTCCAACCGCTGTC 60.803 60.000 0.00 0.00 0.00 3.51
542 543 1.215647 GATCGAGTCCAACCGCTGT 59.784 57.895 0.00 0.00 0.00 4.40
543 544 1.519455 GGATCGAGTCCAACCGCTG 60.519 63.158 8.48 0.00 46.96 5.18
544 545 2.893398 GGATCGAGTCCAACCGCT 59.107 61.111 8.48 0.00 46.96 5.52
551 552 2.750715 GATTCCGGCGGATCGAGTCC 62.751 65.000 31.59 9.89 44.10 3.85
552 553 1.371881 GATTCCGGCGGATCGAGTC 60.372 63.158 31.59 17.94 0.00 3.36
553 554 2.728817 GATTCCGGCGGATCGAGT 59.271 61.111 31.59 13.45 0.00 4.18
554 555 2.049063 GGATTCCGGCGGATCGAG 60.049 66.667 31.59 0.00 0.00 4.04
555 556 0.896479 TATGGATTCCGGCGGATCGA 60.896 55.000 31.59 23.84 0.00 3.59
556 557 0.458543 CTATGGATTCCGGCGGATCG 60.459 60.000 31.59 6.53 0.00 3.69
557 558 0.741221 GCTATGGATTCCGGCGGATC 60.741 60.000 31.59 25.75 0.00 3.36
558 559 1.296715 GCTATGGATTCCGGCGGAT 59.703 57.895 31.59 19.53 0.00 4.18
559 560 1.480212 ATGCTATGGATTCCGGCGGA 61.480 55.000 27.46 27.46 0.00 5.54
560 561 0.249120 TATGCTATGGATTCCGGCGG 59.751 55.000 22.51 22.51 0.00 6.13
561 562 2.093306 TTATGCTATGGATTCCGGCG 57.907 50.000 0.00 0.00 0.00 6.46
562 563 2.098117 GCATTATGCTATGGATTCCGGC 59.902 50.000 10.27 3.46 40.96 6.13
563 564 2.684881 GGCATTATGCTATGGATTCCGG 59.315 50.000 17.13 0.00 44.28 5.14
564 565 2.684881 GGGCATTATGCTATGGATTCCG 59.315 50.000 17.13 0.00 44.28 4.30
565 566 3.026694 GGGGCATTATGCTATGGATTCC 58.973 50.000 17.13 6.71 44.28 3.01
566 567 2.684881 CGGGGCATTATGCTATGGATTC 59.315 50.000 17.13 0.00 44.28 2.52
567 568 2.621407 CCGGGGCATTATGCTATGGATT 60.621 50.000 17.13 0.00 44.28 3.01
568 569 1.064463 CCGGGGCATTATGCTATGGAT 60.064 52.381 17.13 0.00 44.28 3.41
569 570 0.327924 CCGGGGCATTATGCTATGGA 59.672 55.000 17.13 0.00 44.28 3.41
570 571 1.315257 GCCGGGGCATTATGCTATGG 61.315 60.000 17.13 15.51 44.28 2.74
571 572 2.183409 GCCGGGGCATTATGCTATG 58.817 57.895 17.13 6.63 44.28 2.23
572 573 4.743018 GCCGGGGCATTATGCTAT 57.257 55.556 17.13 0.00 44.28 2.97
582 583 2.675075 TAGCTTTGTTGCCGGGGC 60.675 61.111 2.18 1.86 42.35 5.80
583 584 2.686816 CGTAGCTTTGTTGCCGGGG 61.687 63.158 2.18 0.00 0.00 5.73
584 585 2.867472 CGTAGCTTTGTTGCCGGG 59.133 61.111 2.18 0.00 0.00 5.73
603 604 3.909086 AAGAAGAGGGGCAGTGCGC 62.909 63.158 23.09 23.09 40.84 6.09
604 605 1.743252 GAAGAAGAGGGGCAGTGCG 60.743 63.158 9.45 0.00 0.00 5.34
605 606 0.037447 AAGAAGAAGAGGGGCAGTGC 59.963 55.000 6.55 6.55 0.00 4.40
606 607 1.627834 AGAAGAAGAAGAGGGGCAGTG 59.372 52.381 0.00 0.00 0.00 3.66
607 608 1.905894 GAGAAGAAGAAGAGGGGCAGT 59.094 52.381 0.00 0.00 0.00 4.40
608 609 1.134848 CGAGAAGAAGAAGAGGGGCAG 60.135 57.143 0.00 0.00 0.00 4.85
609 610 0.898320 CGAGAAGAAGAAGAGGGGCA 59.102 55.000 0.00 0.00 0.00 5.36
610 611 1.136110 CTCGAGAAGAAGAAGAGGGGC 59.864 57.143 6.58 0.00 0.00 5.80
611 612 2.452505 ACTCGAGAAGAAGAAGAGGGG 58.547 52.381 21.68 0.00 33.58 4.79
612 613 5.646577 TTTACTCGAGAAGAAGAAGAGGG 57.353 43.478 21.68 0.00 33.58 4.30
613 614 6.035542 GCAATTTACTCGAGAAGAAGAAGAGG 59.964 42.308 21.68 0.00 33.58 3.69
614 615 6.587990 TGCAATTTACTCGAGAAGAAGAAGAG 59.412 38.462 21.68 0.11 35.28 2.85
615 616 6.455647 TGCAATTTACTCGAGAAGAAGAAGA 58.544 36.000 21.68 0.00 0.00 2.87
616 617 6.712241 TGCAATTTACTCGAGAAGAAGAAG 57.288 37.500 21.68 2.96 0.00 2.85
617 618 7.490962 TTTGCAATTTACTCGAGAAGAAGAA 57.509 32.000 21.68 4.56 0.00 2.52
618 619 7.490962 TTTTGCAATTTACTCGAGAAGAAGA 57.509 32.000 21.68 0.00 0.00 2.87
1661 1693 1.146774 TGTCCACCCATTCCACAACAT 59.853 47.619 0.00 0.00 0.00 2.71
1786 1818 6.915349 TCACTTCTGCTTCTAACTTAGAGAC 58.085 40.000 0.00 0.00 35.96 3.36
1875 1907 3.281727 TTCTCCTTGTGCACAGACTTT 57.718 42.857 20.59 0.00 0.00 2.66
2024 8941 6.773976 TTTTCTTCTCCTTTTTGAGCTCAA 57.226 33.333 25.16 25.16 32.22 3.02
2058 8975 5.376854 CCTTCCAAAGGTCATGTAAGTTG 57.623 43.478 0.00 0.00 43.95 3.16
2129 9049 3.455177 ACTGCATCATCATCTTCACTCCT 59.545 43.478 0.00 0.00 0.00 3.69
2130 9050 3.560481 CACTGCATCATCATCTTCACTCC 59.440 47.826 0.00 0.00 0.00 3.85
2131 9051 3.002451 GCACTGCATCATCATCTTCACTC 59.998 47.826 0.00 0.00 0.00 3.51
2248 9209 6.306356 GCATCACAAACAACAAGACATCATAC 59.694 38.462 0.00 0.00 0.00 2.39
2448 10260 4.170468 AGGCTCAACCCTATATTTGTGG 57.830 45.455 0.00 0.00 40.58 4.17
2450 10262 4.975794 AGGTAGGCTCAACCCTATATTTGT 59.024 41.667 2.77 0.00 39.53 2.83
2503 10319 4.627015 TCAAGGTAGGCTCAACCCTATTA 58.373 43.478 2.77 0.00 39.53 0.98
2546 13861 5.732633 AGAGAAGGAGATTGTCATTGTCAG 58.267 41.667 7.84 0.00 40.71 3.51
2548 13863 6.878389 AGAAAGAGAAGGAGATTGTCATTGTC 59.122 38.462 0.00 0.00 39.04 3.18
2810 14126 8.902540 AAAGTAGTGAACATAACTGTGATCAA 57.097 30.769 0.00 0.00 33.52 2.57
2999 14317 1.337118 GAGAGGCAGATAGGGGAGTG 58.663 60.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.