Multiple sequence alignment - TraesCS1D01G322600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G322600 chr1D 100.000 2432 0 0 1 2432 415437178 415434747 0.000000e+00 4492.0
1 TraesCS1D01G322600 chr1D 100.000 336 0 0 2850 3185 415434329 415433994 3.490000e-174 621.0
2 TraesCS1D01G322600 chr1D 100.000 67 0 0 3119 3185 297055457 297055523 1.200000e-24 124.0
3 TraesCS1D01G322600 chr1A 93.736 1836 78 22 520 2345 513160088 513158280 0.000000e+00 2719.0
4 TraesCS1D01G322600 chr1A 91.837 49 4 0 61 109 566160449 566160401 5.700000e-08 69.4
5 TraesCS1D01G322600 chr1B 93.203 1633 79 16 817 2432 561754356 561752739 0.000000e+00 2372.0
6 TraesCS1D01G322600 chr1B 88.519 270 18 5 521 789 561756407 561756150 6.630000e-82 315.0
7 TraesCS1D01G322600 chr1B 77.517 298 37 15 2855 3124 504516314 504516609 5.500000e-33 152.0
8 TraesCS1D01G322600 chr1B 90.816 98 9 0 102 199 57811258 57811355 7.170000e-27 132.0
9 TraesCS1D01G322600 chr6A 89.909 991 92 5 1200 2183 1031372 1030383 0.000000e+00 1269.0
10 TraesCS1D01G322600 chr6A 92.857 98 7 0 102 199 16649783 16649880 3.310000e-30 143.0
11 TraesCS1D01G322600 chr6A 95.556 45 2 0 155 199 612059415 612059371 4.410000e-09 73.1
12 TraesCS1D01G322600 chr6D 87.130 1080 126 8 1200 2272 1587501 1588574 0.000000e+00 1212.0
13 TraesCS1D01G322600 chr6D 89.161 286 18 7 2850 3124 397366113 397366396 8.460000e-91 344.0
14 TraesCS1D01G322600 chr6D 97.143 70 1 1 3117 3185 155835744 155835675 2.010000e-22 117.0
15 TraesCS1D01G322600 chr6D 82.716 81 14 0 2088 2168 58060114 58060034 4.410000e-09 73.1
16 TraesCS1D01G322600 chr5B 87.220 1072 122 12 1195 2264 511346509 511347567 0.000000e+00 1206.0
17 TraesCS1D01G322600 chr5B 86.022 279 30 7 254 525 447194181 447193905 1.120000e-74 291.0
18 TraesCS1D01G322600 chr5B 83.737 289 37 8 246 525 446422184 446422471 6.770000e-67 265.0
19 TraesCS1D01G322600 chr5B 80.000 285 44 10 2852 3127 591610455 591610175 6.970000e-47 198.0
20 TraesCS1D01G322600 chr6B 88.540 986 113 0 1200 2185 4943418 4944403 0.000000e+00 1195.0
21 TraesCS1D01G322600 chr6B 90.816 98 9 0 102 199 688751938 688751841 7.170000e-27 132.0
22 TraesCS1D01G322600 chr6B 89.831 59 6 0 2088 2146 130317042 130316984 3.410000e-10 76.8
23 TraesCS1D01G322600 chr5A 87.550 1004 114 7 1195 2196 537019052 537020046 0.000000e+00 1151.0
24 TraesCS1D01G322600 chr7D 89.619 289 16 2 2850 3124 581478483 581478771 3.910000e-94 355.0
25 TraesCS1D01G322600 chr7D 85.461 282 31 9 246 520 426824730 426825008 5.200000e-73 285.0
26 TraesCS1D01G322600 chr7D 84.483 290 18 8 2850 3124 480046655 480046932 8.760000e-66 261.0
27 TraesCS1D01G322600 chr7D 91.429 105 3 1 1 105 514740719 514740621 4.280000e-29 139.0
28 TraesCS1D01G322600 chr7D 98.529 68 0 1 3118 3185 402970915 402970981 5.580000e-23 119.0
29 TraesCS1D01G322600 chr7D 92.405 79 5 1 3108 3185 482806142 482806220 9.340000e-21 111.0
30 TraesCS1D01G322600 chr7D 90.110 91 1 6 3100 3184 501913806 501913894 9.340000e-21 111.0
31 TraesCS1D01G322600 chr7D 100.000 60 0 0 3125 3184 538731609 538731550 9.340000e-21 111.0
32 TraesCS1D01G322600 chr7D 95.745 47 2 0 63 109 579054066 579054020 3.410000e-10 76.8
33 TraesCS1D01G322600 chr5D 86.379 301 15 3 2850 3124 449252152 449252452 3.990000e-79 305.0
34 TraesCS1D01G322600 chr5D 85.772 246 22 5 2850 3083 495165550 495165794 6.820000e-62 248.0
35 TraesCS1D01G322600 chr5D 93.878 98 3 1 1 98 113883957 113883863 9.210000e-31 145.0
36 TraesCS1D01G322600 chr2A 86.567 268 30 6 246 508 662250573 662250307 1.120000e-74 291.0
37 TraesCS1D01G322600 chr4B 85.050 301 18 4 2850 3124 191656881 191657180 6.730000e-72 281.0
38 TraesCS1D01G322600 chr4B 95.960 99 4 0 11 109 634411680 634411582 9.140000e-36 161.0
39 TraesCS1D01G322600 chr4B 97.059 34 1 0 148 181 573089735 573089768 1.230000e-04 58.4
40 TraesCS1D01G322600 chr4D 84.429 289 30 9 2850 3124 416624362 416624075 1.460000e-68 270.0
41 TraesCS1D01G322600 chr4D 83.162 291 30 10 2850 3124 416688357 416688070 6.820000e-62 248.0
42 TraesCS1D01G322600 chr3D 88.945 199 22 0 306 504 445502937 445503135 2.450000e-61 246.0
43 TraesCS1D01G322600 chr3D 90.625 96 9 0 102 197 445502626 445502721 9.270000e-26 128.0
44 TraesCS1D01G322600 chr2D 90.110 182 17 1 261 441 619429500 619429681 5.310000e-58 235.0
45 TraesCS1D01G322600 chr2D 100.000 65 0 0 3121 3185 214201659 214201723 1.550000e-23 121.0
46 TraesCS1D01G322600 chr2D 98.529 68 1 0 3118 3185 227006508 227006441 1.550000e-23 121.0
47 TraesCS1D01G322600 chr2D 95.652 69 2 1 3117 3185 319227463 319227396 3.360000e-20 110.0
48 TraesCS1D01G322600 chr2D 97.778 45 1 0 61 105 637509792 637509836 9.470000e-11 78.7
49 TraesCS1D01G322600 chr3A 79.208 303 32 16 2850 3121 492325986 492326288 7.020000e-42 182.0
50 TraesCS1D01G322600 chr3A 93.204 103 4 1 1 103 720852534 720852633 7.120000e-32 148.0
51 TraesCS1D01G322600 chr7B 77.778 279 48 12 2850 3124 558320623 558320891 3.290000e-35 159.0
52 TraesCS1D01G322600 chr4A 80.986 142 20 6 1209 1348 606397643 606397779 4.350000e-19 106.0
53 TraesCS1D01G322600 chr3B 94.444 36 2 0 168 203 59849759 59849794 4.440000e-04 56.5
54 TraesCS1D01G322600 chr7A 100.000 28 0 0 356 383 110087502 110087475 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G322600 chr1D 415433994 415437178 3184 True 2556.5 4492 100.000 1 3185 2 chr1D.!!$R1 3184
1 TraesCS1D01G322600 chr1A 513158280 513160088 1808 True 2719.0 2719 93.736 520 2345 1 chr1A.!!$R1 1825
2 TraesCS1D01G322600 chr1B 561752739 561756407 3668 True 1343.5 2372 90.861 521 2432 2 chr1B.!!$R1 1911
3 TraesCS1D01G322600 chr6A 1030383 1031372 989 True 1269.0 1269 89.909 1200 2183 1 chr6A.!!$R1 983
4 TraesCS1D01G322600 chr6D 1587501 1588574 1073 False 1212.0 1212 87.130 1200 2272 1 chr6D.!!$F1 1072
5 TraesCS1D01G322600 chr5B 511346509 511347567 1058 False 1206.0 1206 87.220 1195 2264 1 chr5B.!!$F2 1069
6 TraesCS1D01G322600 chr6B 4943418 4944403 985 False 1195.0 1195 88.540 1200 2185 1 chr6B.!!$F1 985
7 TraesCS1D01G322600 chr5A 537019052 537020046 994 False 1151.0 1151 87.550 1195 2196 1 chr5A.!!$F1 1001

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.031616 GAGGAGGTGGTGGAGGAGAT 60.032 60.0 0.0 0.0 0.0 2.75 F
45 46 0.031616 AGGAGGTGGTGGAGGAGATC 60.032 60.0 0.0 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 3719 0.319040 CCCGTAGATGTCCATCAGCG 60.319 60.0 9.76 11.69 40.22 5.18 R
2272 4062 2.566833 TTGCTGTCACAAGGTGCTAT 57.433 45.0 0.00 0.00 32.98 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.821589 GCGTCTTGCGGGAGGAGG 62.822 72.222 0.00 0.00 41.69 4.30
32 33 3.382832 CGTCTTGCGGGAGGAGGT 61.383 66.667 0.00 0.00 36.85 3.85
33 34 2.266055 GTCTTGCGGGAGGAGGTG 59.734 66.667 0.00 0.00 0.00 4.00
34 35 3.003173 TCTTGCGGGAGGAGGTGG 61.003 66.667 0.00 0.00 0.00 4.61
35 36 3.322466 CTTGCGGGAGGAGGTGGT 61.322 66.667 0.00 0.00 0.00 4.16
36 37 3.612247 CTTGCGGGAGGAGGTGGTG 62.612 68.421 0.00 0.00 0.00 4.17
39 40 3.077556 CGGGAGGAGGTGGTGGAG 61.078 72.222 0.00 0.00 0.00 3.86
40 41 2.689034 GGGAGGAGGTGGTGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
41 42 2.450243 GGAGGAGGTGGTGGAGGA 59.550 66.667 0.00 0.00 0.00 3.71
42 43 1.687493 GGAGGAGGTGGTGGAGGAG 60.687 68.421 0.00 0.00 0.00 3.69
43 44 1.388531 GAGGAGGTGGTGGAGGAGA 59.611 63.158 0.00 0.00 0.00 3.71
44 45 0.031616 GAGGAGGTGGTGGAGGAGAT 60.032 60.000 0.00 0.00 0.00 2.75
45 46 0.031616 AGGAGGTGGTGGAGGAGATC 60.032 60.000 0.00 0.00 0.00 2.75
46 47 0.031616 GGAGGTGGTGGAGGAGATCT 60.032 60.000 0.00 0.00 0.00 2.75
47 48 1.623834 GGAGGTGGTGGAGGAGATCTT 60.624 57.143 0.00 0.00 0.00 2.40
48 49 1.484240 GAGGTGGTGGAGGAGATCTTG 59.516 57.143 0.00 0.00 0.00 3.02
49 50 0.543749 GGTGGTGGAGGAGATCTTGG 59.456 60.000 0.00 0.00 0.00 3.61
50 51 0.543749 GTGGTGGAGGAGATCTTGGG 59.456 60.000 0.00 0.00 0.00 4.12
51 52 1.274703 TGGTGGAGGAGATCTTGGGC 61.275 60.000 0.00 0.00 0.00 5.36
52 53 1.144936 GTGGAGGAGATCTTGGGCG 59.855 63.158 0.00 0.00 0.00 6.13
53 54 1.306141 TGGAGGAGATCTTGGGCGT 60.306 57.895 0.00 0.00 0.00 5.68
54 55 1.144936 GGAGGAGATCTTGGGCGTG 59.855 63.158 0.00 0.00 0.00 5.34
55 56 1.144936 GAGGAGATCTTGGGCGTGG 59.855 63.158 0.00 0.00 0.00 4.94
56 57 2.514824 GGAGATCTTGGGCGTGGC 60.515 66.667 0.00 0.00 0.00 5.01
77 78 4.516195 GCGACCGCTTCCTCCCTC 62.516 72.222 7.19 0.00 38.26 4.30
78 79 4.194720 CGACCGCTTCCTCCCTCG 62.195 72.222 0.00 0.00 0.00 4.63
79 80 2.754658 GACCGCTTCCTCCCTCGA 60.755 66.667 0.00 0.00 0.00 4.04
80 81 3.066233 GACCGCTTCCTCCCTCGAC 62.066 68.421 0.00 0.00 0.00 4.20
81 82 4.194720 CCGCTTCCTCCCTCGACG 62.195 72.222 0.00 0.00 0.00 5.12
82 83 4.856607 CGCTTCCTCCCTCGACGC 62.857 72.222 0.00 0.00 0.00 5.19
83 84 4.516195 GCTTCCTCCCTCGACGCC 62.516 72.222 0.00 0.00 0.00 5.68
84 85 4.194720 CTTCCTCCCTCGACGCCG 62.195 72.222 0.00 0.00 37.07 6.46
110 111 4.489771 GGATGCAGTCCGGGGGTG 62.490 72.222 0.00 0.00 37.23 4.61
133 134 3.691342 CCGGGTGGTGCTCTTCGA 61.691 66.667 0.00 0.00 0.00 3.71
134 135 2.432628 CGGGTGGTGCTCTTCGAC 60.433 66.667 0.00 0.00 0.00 4.20
135 136 2.047179 GGGTGGTGCTCTTCGACC 60.047 66.667 0.00 0.00 33.87 4.79
136 137 2.584391 GGGTGGTGCTCTTCGACCT 61.584 63.158 0.00 0.00 34.79 3.85
137 138 1.374758 GGTGGTGCTCTTCGACCTG 60.375 63.158 0.00 0.00 32.98 4.00
138 139 1.374758 GTGGTGCTCTTCGACCTGG 60.375 63.158 0.00 0.00 32.98 4.45
139 140 1.837051 TGGTGCTCTTCGACCTGGT 60.837 57.895 0.00 0.00 32.98 4.00
140 141 1.079750 GGTGCTCTTCGACCTGGTC 60.080 63.158 16.99 16.99 0.00 4.02
141 142 1.536943 GGTGCTCTTCGACCTGGTCT 61.537 60.000 23.49 0.00 0.00 3.85
142 143 0.389166 GTGCTCTTCGACCTGGTCTG 60.389 60.000 23.49 16.69 0.00 3.51
143 144 1.446966 GCTCTTCGACCTGGTCTGC 60.447 63.158 23.49 15.09 0.00 4.26
144 145 1.967535 CTCTTCGACCTGGTCTGCA 59.032 57.895 23.49 7.85 0.00 4.41
145 146 0.389166 CTCTTCGACCTGGTCTGCAC 60.389 60.000 23.49 0.00 0.00 4.57
146 147 1.734477 CTTCGACCTGGTCTGCACG 60.734 63.158 23.49 11.52 0.00 5.34
147 148 3.220999 TTCGACCTGGTCTGCACGG 62.221 63.158 23.49 7.93 0.00 4.94
218 219 4.680237 CGGCCACGCTTGTGAGGA 62.680 66.667 2.24 0.00 46.91 3.71
219 220 2.045926 GGCCACGCTTGTGAGGAT 60.046 61.111 0.00 0.00 46.91 3.24
220 221 2.401766 GGCCACGCTTGTGAGGATG 61.402 63.158 0.00 0.00 46.91 3.51
221 222 2.401766 GCCACGCTTGTGAGGATGG 61.402 63.158 1.98 0.00 46.91 3.51
222 223 1.746615 CCACGCTTGTGAGGATGGG 60.747 63.158 0.00 0.00 46.91 4.00
223 224 1.296392 CACGCTTGTGAGGATGGGA 59.704 57.895 0.00 0.00 46.91 4.37
224 225 1.021390 CACGCTTGTGAGGATGGGAC 61.021 60.000 0.00 0.00 46.91 4.46
225 226 1.450312 CGCTTGTGAGGATGGGACC 60.450 63.158 0.00 0.00 0.00 4.46
226 227 1.903877 CGCTTGTGAGGATGGGACCT 61.904 60.000 0.00 0.00 43.64 3.85
227 228 0.393537 GCTTGTGAGGATGGGACCTG 60.394 60.000 0.00 0.00 40.73 4.00
228 229 0.254178 CTTGTGAGGATGGGACCTGG 59.746 60.000 0.00 0.00 40.73 4.45
229 230 0.178876 TTGTGAGGATGGGACCTGGA 60.179 55.000 0.00 0.00 40.73 3.86
230 231 0.618680 TGTGAGGATGGGACCTGGAG 60.619 60.000 0.00 0.00 40.73 3.86
231 232 0.325671 GTGAGGATGGGACCTGGAGA 60.326 60.000 0.00 0.00 40.73 3.71
232 233 0.417437 TGAGGATGGGACCTGGAGAA 59.583 55.000 0.00 0.00 40.73 2.87
233 234 1.203428 TGAGGATGGGACCTGGAGAAA 60.203 52.381 0.00 0.00 40.73 2.52
234 235 1.916181 GAGGATGGGACCTGGAGAAAA 59.084 52.381 0.00 0.00 40.73 2.29
235 236 2.308866 GAGGATGGGACCTGGAGAAAAA 59.691 50.000 0.00 0.00 40.73 1.94
236 237 2.310052 AGGATGGGACCTGGAGAAAAAG 59.690 50.000 0.00 0.00 39.01 2.27
237 238 2.621668 GGATGGGACCTGGAGAAAAAGG 60.622 54.545 0.00 0.00 39.65 3.11
238 239 1.827792 TGGGACCTGGAGAAAAAGGA 58.172 50.000 0.00 0.00 37.01 3.36
239 240 2.140224 TGGGACCTGGAGAAAAAGGAA 58.860 47.619 0.00 0.00 37.01 3.36
240 241 2.108250 TGGGACCTGGAGAAAAAGGAAG 59.892 50.000 0.00 0.00 37.01 3.46
241 242 2.555448 GGGACCTGGAGAAAAAGGAAGG 60.555 54.545 0.00 0.00 37.01 3.46
242 243 2.375509 GGACCTGGAGAAAAAGGAAGGA 59.624 50.000 0.00 0.00 37.01 3.36
243 244 3.560239 GGACCTGGAGAAAAAGGAAGGAG 60.560 52.174 0.00 0.00 37.01 3.69
244 245 3.327439 ACCTGGAGAAAAAGGAAGGAGA 58.673 45.455 0.00 0.00 37.01 3.71
245 246 3.329225 ACCTGGAGAAAAAGGAAGGAGAG 59.671 47.826 0.00 0.00 37.01 3.20
246 247 3.329225 CCTGGAGAAAAAGGAAGGAGAGT 59.671 47.826 0.00 0.00 35.40 3.24
247 248 4.322567 CTGGAGAAAAAGGAAGGAGAGTG 58.677 47.826 0.00 0.00 0.00 3.51
248 249 3.073062 TGGAGAAAAAGGAAGGAGAGTGG 59.927 47.826 0.00 0.00 0.00 4.00
249 250 3.560239 GGAGAAAAAGGAAGGAGAGTGGG 60.560 52.174 0.00 0.00 0.00 4.61
250 251 2.376855 AGAAAAAGGAAGGAGAGTGGGG 59.623 50.000 0.00 0.00 0.00 4.96
251 252 1.076438 AAAAGGAAGGAGAGTGGGGG 58.924 55.000 0.00 0.00 0.00 5.40
252 253 0.103876 AAAGGAAGGAGAGTGGGGGT 60.104 55.000 0.00 0.00 0.00 4.95
253 254 0.842467 AAGGAAGGAGAGTGGGGGTG 60.842 60.000 0.00 0.00 0.00 4.61
254 255 2.301738 GGAAGGAGAGTGGGGGTGG 61.302 68.421 0.00 0.00 0.00 4.61
255 256 2.204151 AAGGAGAGTGGGGGTGGG 60.204 66.667 0.00 0.00 0.00 4.61
256 257 2.765705 GAAGGAGAGTGGGGGTGGGA 62.766 65.000 0.00 0.00 0.00 4.37
257 258 2.689034 GGAGAGTGGGGGTGGGAG 60.689 72.222 0.00 0.00 0.00 4.30
258 259 2.689034 GAGAGTGGGGGTGGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
277 278 3.936203 GTGCACGTGAGGGTGGGA 61.936 66.667 22.23 0.00 38.36 4.37
278 279 3.936203 TGCACGTGAGGGTGGGAC 61.936 66.667 22.23 0.00 38.36 4.46
279 280 3.936203 GCACGTGAGGGTGGGACA 61.936 66.667 22.23 0.00 38.36 4.02
280 281 3.068881 CACGTGAGGGTGGGACAT 58.931 61.111 10.90 0.00 44.52 3.06
281 282 1.375908 CACGTGAGGGTGGGACATG 60.376 63.158 10.90 0.00 44.52 3.21
282 283 2.268920 CGTGAGGGTGGGACATGG 59.731 66.667 0.00 0.00 44.52 3.66
283 284 2.290287 CGTGAGGGTGGGACATGGA 61.290 63.158 0.00 0.00 44.52 3.41
284 285 1.604378 GTGAGGGTGGGACATGGAG 59.396 63.158 0.00 0.00 44.52 3.86
285 286 0.909610 GTGAGGGTGGGACATGGAGA 60.910 60.000 0.00 0.00 44.52 3.71
286 287 0.178876 TGAGGGTGGGACATGGAGAA 60.179 55.000 0.00 0.00 44.52 2.87
287 288 0.991920 GAGGGTGGGACATGGAGAAA 59.008 55.000 0.00 0.00 44.52 2.52
288 289 1.354368 GAGGGTGGGACATGGAGAAAA 59.646 52.381 0.00 0.00 44.52 2.29
289 290 1.786441 AGGGTGGGACATGGAGAAAAA 59.214 47.619 0.00 0.00 44.52 1.94
290 291 2.383338 AGGGTGGGACATGGAGAAAAAT 59.617 45.455 0.00 0.00 44.52 1.82
291 292 2.497273 GGGTGGGACATGGAGAAAAATG 59.503 50.000 0.00 0.00 44.52 2.32
292 293 3.430453 GGTGGGACATGGAGAAAAATGA 58.570 45.455 0.00 0.00 44.52 2.57
293 294 3.831911 GGTGGGACATGGAGAAAAATGAA 59.168 43.478 0.00 0.00 44.52 2.57
294 295 4.082026 GGTGGGACATGGAGAAAAATGAAG 60.082 45.833 0.00 0.00 44.52 3.02
295 296 4.082026 GTGGGACATGGAGAAAAATGAAGG 60.082 45.833 0.00 0.00 44.52 3.46
296 297 4.202663 TGGGACATGGAGAAAAATGAAGGA 60.203 41.667 0.00 0.00 0.00 3.36
297 298 4.400567 GGGACATGGAGAAAAATGAAGGAG 59.599 45.833 0.00 0.00 0.00 3.69
298 299 5.256474 GGACATGGAGAAAAATGAAGGAGA 58.744 41.667 0.00 0.00 0.00 3.71
299 300 5.356470 GGACATGGAGAAAAATGAAGGAGAG 59.644 44.000 0.00 0.00 0.00 3.20
300 301 6.131972 ACATGGAGAAAAATGAAGGAGAGA 57.868 37.500 0.00 0.00 0.00 3.10
301 302 6.179040 ACATGGAGAAAAATGAAGGAGAGAG 58.821 40.000 0.00 0.00 0.00 3.20
302 303 5.171339 TGGAGAAAAATGAAGGAGAGAGG 57.829 43.478 0.00 0.00 0.00 3.69
303 304 4.018960 TGGAGAAAAATGAAGGAGAGAGGG 60.019 45.833 0.00 0.00 0.00 4.30
304 305 4.522114 GAGAAAAATGAAGGAGAGAGGGG 58.478 47.826 0.00 0.00 0.00 4.79
305 306 3.268072 AGAAAAATGAAGGAGAGAGGGGG 59.732 47.826 0.00 0.00 0.00 5.40
306 307 2.367947 AAATGAAGGAGAGAGGGGGT 57.632 50.000 0.00 0.00 0.00 4.95
307 308 1.589414 AATGAAGGAGAGAGGGGGTG 58.411 55.000 0.00 0.00 0.00 4.61
308 309 0.719015 ATGAAGGAGAGAGGGGGTGA 59.281 55.000 0.00 0.00 0.00 4.02
309 310 0.041833 TGAAGGAGAGAGGGGGTGAG 59.958 60.000 0.00 0.00 0.00 3.51
310 311 0.336737 GAAGGAGAGAGGGGGTGAGA 59.663 60.000 0.00 0.00 0.00 3.27
311 312 0.338120 AAGGAGAGAGGGGGTGAGAG 59.662 60.000 0.00 0.00 0.00 3.20
312 313 1.760480 GGAGAGAGGGGGTGAGAGC 60.760 68.421 0.00 0.00 0.00 4.09
313 314 1.760480 GAGAGAGGGGGTGAGAGCC 60.760 68.421 0.00 0.00 34.31 4.70
314 315 2.236959 GAGAGAGGGGGTGAGAGCCT 62.237 65.000 0.00 0.00 35.71 4.58
315 316 2.040278 AGAGGGGGTGAGAGCCTG 59.960 66.667 0.00 0.00 35.71 4.85
316 317 2.039624 GAGGGGGTGAGAGCCTGA 59.960 66.667 0.00 0.00 35.71 3.86
317 318 2.284995 AGGGGGTGAGAGCCTGAC 60.285 66.667 0.00 0.00 35.71 3.51
318 319 2.284995 GGGGGTGAGAGCCTGACT 60.285 66.667 0.00 0.00 35.71 3.41
319 320 2.664081 GGGGGTGAGAGCCTGACTG 61.664 68.421 0.00 0.00 35.71 3.51
320 321 1.915769 GGGGTGAGAGCCTGACTGT 60.916 63.158 0.00 0.00 35.71 3.55
321 322 1.294780 GGGTGAGAGCCTGACTGTG 59.705 63.158 0.00 0.00 31.81 3.66
322 323 1.294780 GGTGAGAGCCTGACTGTGG 59.705 63.158 0.00 0.00 0.00 4.17
323 324 1.294780 GTGAGAGCCTGACTGTGGG 59.705 63.158 0.00 0.00 0.00 4.61
328 329 2.036256 GCCTGACTGTGGGCCAAT 59.964 61.111 8.40 0.00 42.30 3.16
329 330 1.607467 GCCTGACTGTGGGCCAATT 60.607 57.895 8.40 0.00 42.30 2.32
330 331 1.880819 GCCTGACTGTGGGCCAATTG 61.881 60.000 8.40 3.67 42.30 2.32
331 332 1.588082 CTGACTGTGGGCCAATTGC 59.412 57.895 8.40 0.00 40.16 3.56
332 333 1.152589 TGACTGTGGGCCAATTGCA 60.153 52.632 8.40 0.00 43.89 4.08
333 334 0.542467 TGACTGTGGGCCAATTGCAT 60.542 50.000 8.40 0.00 43.89 3.96
334 335 0.108520 GACTGTGGGCCAATTGCATG 60.109 55.000 8.40 0.00 43.89 4.06
335 336 0.832983 ACTGTGGGCCAATTGCATGT 60.833 50.000 8.40 0.00 43.89 3.21
336 337 1.184431 CTGTGGGCCAATTGCATGTA 58.816 50.000 8.40 0.00 43.89 2.29
337 338 1.549620 CTGTGGGCCAATTGCATGTAA 59.450 47.619 8.40 0.00 43.89 2.41
338 339 1.973515 TGTGGGCCAATTGCATGTAAA 59.026 42.857 8.40 0.00 43.89 2.01
339 340 2.028294 TGTGGGCCAATTGCATGTAAAG 60.028 45.455 8.40 0.00 43.89 1.85
340 341 2.028203 GTGGGCCAATTGCATGTAAAGT 60.028 45.455 8.40 0.00 43.89 2.66
341 342 2.233431 TGGGCCAATTGCATGTAAAGTC 59.767 45.455 2.13 0.00 43.89 3.01
342 343 2.497273 GGGCCAATTGCATGTAAAGTCT 59.503 45.455 4.39 0.00 43.89 3.24
343 344 3.055891 GGGCCAATTGCATGTAAAGTCTT 60.056 43.478 4.39 0.00 43.89 3.01
344 345 4.176271 GGCCAATTGCATGTAAAGTCTTC 58.824 43.478 0.00 0.00 43.89 2.87
345 346 4.082026 GGCCAATTGCATGTAAAGTCTTCT 60.082 41.667 0.00 0.00 43.89 2.85
346 347 5.098211 GCCAATTGCATGTAAAGTCTTCTC 58.902 41.667 0.00 0.00 40.77 2.87
347 348 5.105997 GCCAATTGCATGTAAAGTCTTCTCT 60.106 40.000 0.00 0.00 40.77 3.10
348 349 6.549952 CCAATTGCATGTAAAGTCTTCTCTC 58.450 40.000 0.00 0.00 0.00 3.20
349 350 6.373774 CCAATTGCATGTAAAGTCTTCTCTCT 59.626 38.462 0.00 0.00 0.00 3.10
350 351 7.413877 CCAATTGCATGTAAAGTCTTCTCTCTC 60.414 40.741 0.00 0.00 0.00 3.20
351 352 5.078411 TGCATGTAAAGTCTTCTCTCTCC 57.922 43.478 0.00 0.00 0.00 3.71
352 353 4.109050 GCATGTAAAGTCTTCTCTCTCCG 58.891 47.826 0.00 0.00 0.00 4.63
353 354 3.851976 TGTAAAGTCTTCTCTCTCCGC 57.148 47.619 0.00 0.00 0.00 5.54
354 355 3.422796 TGTAAAGTCTTCTCTCTCCGCT 58.577 45.455 0.00 0.00 0.00 5.52
355 356 3.440872 TGTAAAGTCTTCTCTCTCCGCTC 59.559 47.826 0.00 0.00 0.00 5.03
356 357 1.470051 AAGTCTTCTCTCTCCGCTCC 58.530 55.000 0.00 0.00 0.00 4.70
357 358 0.395173 AGTCTTCTCTCTCCGCTCCC 60.395 60.000 0.00 0.00 0.00 4.30
358 359 0.681564 GTCTTCTCTCTCCGCTCCCA 60.682 60.000 0.00 0.00 0.00 4.37
359 360 0.039764 TCTTCTCTCTCCGCTCCCAA 59.960 55.000 0.00 0.00 0.00 4.12
360 361 0.459489 CTTCTCTCTCCGCTCCCAAG 59.541 60.000 0.00 0.00 0.00 3.61
361 362 0.251832 TTCTCTCTCCGCTCCCAAGT 60.252 55.000 0.00 0.00 0.00 3.16
362 363 0.967887 TCTCTCTCCGCTCCCAAGTG 60.968 60.000 0.00 0.00 0.00 3.16
363 364 0.967887 CTCTCTCCGCTCCCAAGTGA 60.968 60.000 0.00 0.00 34.83 3.41
364 365 1.216710 CTCTCCGCTCCCAAGTGAC 59.783 63.158 0.00 0.00 34.83 3.67
365 366 2.232298 CTCTCCGCTCCCAAGTGACC 62.232 65.000 0.00 0.00 34.83 4.02
366 367 3.316573 CTCCGCTCCCAAGTGACCC 62.317 68.421 0.00 0.00 34.83 4.46
367 368 4.410400 CCGCTCCCAAGTGACCCC 62.410 72.222 0.00 0.00 34.83 4.95
368 369 4.410400 CGCTCCCAAGTGACCCCC 62.410 72.222 0.00 0.00 34.83 5.40
369 370 4.410400 GCTCCCAAGTGACCCCCG 62.410 72.222 0.00 0.00 0.00 5.73
370 371 3.717294 CTCCCAAGTGACCCCCGG 61.717 72.222 0.00 0.00 0.00 5.73
371 372 4.585216 TCCCAAGTGACCCCCGGT 62.585 66.667 0.00 0.00 39.44 5.28
372 373 4.344865 CCCAAGTGACCCCCGGTG 62.345 72.222 0.00 0.00 35.25 4.94
373 374 4.344865 CCAAGTGACCCCCGGTGG 62.345 72.222 0.00 0.00 35.25 4.61
396 397 4.994471 GTTTCGCCCGGGGTCGTT 62.994 66.667 25.28 0.00 33.95 3.85
397 398 4.992511 TTTCGCCCGGGGTCGTTG 62.993 66.667 25.28 7.25 33.95 4.10
403 404 4.323477 CCGGGGTCGTTGGCTGAA 62.323 66.667 0.00 0.00 33.95 3.02
404 405 2.046314 CGGGGTCGTTGGCTGAAT 60.046 61.111 0.00 0.00 0.00 2.57
405 406 1.674322 CGGGGTCGTTGGCTGAATT 60.674 57.895 0.00 0.00 0.00 2.17
406 407 1.241315 CGGGGTCGTTGGCTGAATTT 61.241 55.000 0.00 0.00 0.00 1.82
407 408 0.966179 GGGGTCGTTGGCTGAATTTT 59.034 50.000 0.00 0.00 0.00 1.82
408 409 1.343142 GGGGTCGTTGGCTGAATTTTT 59.657 47.619 0.00 0.00 0.00 1.94
409 410 2.403259 GGGTCGTTGGCTGAATTTTTG 58.597 47.619 0.00 0.00 0.00 2.44
410 411 2.403259 GGTCGTTGGCTGAATTTTTGG 58.597 47.619 0.00 0.00 0.00 3.28
411 412 1.792367 GTCGTTGGCTGAATTTTTGGC 59.208 47.619 0.00 0.00 0.00 4.52
412 413 1.686052 TCGTTGGCTGAATTTTTGGCT 59.314 42.857 0.00 0.00 0.00 4.75
413 414 2.102252 TCGTTGGCTGAATTTTTGGCTT 59.898 40.909 0.00 0.00 0.00 4.35
414 415 3.319405 TCGTTGGCTGAATTTTTGGCTTA 59.681 39.130 0.00 0.00 0.00 3.09
415 416 4.054671 CGTTGGCTGAATTTTTGGCTTAA 58.945 39.130 0.00 0.00 0.00 1.85
416 417 4.690280 CGTTGGCTGAATTTTTGGCTTAAT 59.310 37.500 0.00 0.00 0.00 1.40
417 418 5.163963 CGTTGGCTGAATTTTTGGCTTAATC 60.164 40.000 0.00 0.00 0.00 1.75
418 419 4.831107 TGGCTGAATTTTTGGCTTAATCC 58.169 39.130 0.00 0.00 0.00 3.01
419 420 3.865164 GGCTGAATTTTTGGCTTAATCCG 59.135 43.478 0.00 0.00 0.00 4.18
420 421 3.865164 GCTGAATTTTTGGCTTAATCCGG 59.135 43.478 0.00 0.00 0.00 5.14
421 422 3.855858 TGAATTTTTGGCTTAATCCGGC 58.144 40.909 0.00 0.00 0.00 6.13
422 423 2.577449 ATTTTTGGCTTAATCCGGCG 57.423 45.000 0.00 0.00 0.00 6.46
423 424 1.535833 TTTTTGGCTTAATCCGGCGA 58.464 45.000 9.30 0.00 0.00 5.54
424 425 1.535833 TTTTGGCTTAATCCGGCGAA 58.464 45.000 9.30 0.00 0.00 4.70
425 426 1.535833 TTTGGCTTAATCCGGCGAAA 58.464 45.000 9.30 0.00 34.74 3.46
426 427 1.535833 TTGGCTTAATCCGGCGAAAA 58.464 45.000 9.30 0.00 0.00 2.29
427 428 1.535833 TGGCTTAATCCGGCGAAAAA 58.464 45.000 9.30 0.00 0.00 1.94
428 429 1.470890 TGGCTTAATCCGGCGAAAAAG 59.529 47.619 9.30 7.65 0.00 2.27
429 430 1.202256 GGCTTAATCCGGCGAAAAAGG 60.202 52.381 9.30 0.00 0.00 3.11
430 431 1.741145 GCTTAATCCGGCGAAAAAGGA 59.259 47.619 9.30 0.00 38.56 3.36
431 432 2.223272 GCTTAATCCGGCGAAAAAGGAG 60.223 50.000 9.30 0.00 37.49 3.69
432 433 3.267483 CTTAATCCGGCGAAAAAGGAGA 58.733 45.455 9.30 0.00 37.49 3.71
433 434 2.194201 AATCCGGCGAAAAAGGAGAA 57.806 45.000 9.30 0.00 37.49 2.87
434 435 1.739067 ATCCGGCGAAAAAGGAGAAG 58.261 50.000 9.30 0.00 37.49 2.85
435 436 0.395312 TCCGGCGAAAAAGGAGAAGT 59.605 50.000 9.30 0.00 0.00 3.01
436 437 1.202722 TCCGGCGAAAAAGGAGAAGTT 60.203 47.619 9.30 0.00 0.00 2.66
437 438 1.069227 CCGGCGAAAAAGGAGAAGTTG 60.069 52.381 9.30 0.00 0.00 3.16
438 439 1.069227 CGGCGAAAAAGGAGAAGTTGG 60.069 52.381 0.00 0.00 0.00 3.77
439 440 1.269723 GGCGAAAAAGGAGAAGTTGGG 59.730 52.381 0.00 0.00 0.00 4.12
440 441 1.269723 GCGAAAAAGGAGAAGTTGGGG 59.730 52.381 0.00 0.00 0.00 4.96
441 442 2.583143 CGAAAAAGGAGAAGTTGGGGT 58.417 47.619 0.00 0.00 0.00 4.95
442 443 2.956333 CGAAAAAGGAGAAGTTGGGGTT 59.044 45.455 0.00 0.00 0.00 4.11
443 444 3.243401 CGAAAAAGGAGAAGTTGGGGTTG 60.243 47.826 0.00 0.00 0.00 3.77
444 445 1.704641 AAAGGAGAAGTTGGGGTTGC 58.295 50.000 0.00 0.00 0.00 4.17
445 446 0.853530 AAGGAGAAGTTGGGGTTGCT 59.146 50.000 0.00 0.00 0.00 3.91
446 447 1.742308 AGGAGAAGTTGGGGTTGCTA 58.258 50.000 0.00 0.00 0.00 3.49
447 448 1.351350 AGGAGAAGTTGGGGTTGCTAC 59.649 52.381 0.00 0.00 0.00 3.58
448 449 1.351350 GGAGAAGTTGGGGTTGCTACT 59.649 52.381 0.00 0.00 0.00 2.57
449 450 2.427506 GAGAAGTTGGGGTTGCTACTG 58.572 52.381 0.00 0.00 0.00 2.74
450 451 1.073923 AGAAGTTGGGGTTGCTACTGG 59.926 52.381 0.00 0.00 0.00 4.00
451 452 0.112412 AAGTTGGGGTTGCTACTGGG 59.888 55.000 0.00 0.00 0.00 4.45
452 453 0.770557 AGTTGGGGTTGCTACTGGGA 60.771 55.000 0.00 0.00 0.00 4.37
453 454 0.608308 GTTGGGGTTGCTACTGGGAC 60.608 60.000 0.00 0.00 0.00 4.46
454 455 2.119484 TTGGGGTTGCTACTGGGACG 62.119 60.000 0.00 0.00 0.00 4.79
455 456 2.288025 GGGGTTGCTACTGGGACGA 61.288 63.158 0.00 0.00 0.00 4.20
456 457 1.623542 GGGGTTGCTACTGGGACGAT 61.624 60.000 0.00 0.00 0.00 3.73
457 458 0.252197 GGGTTGCTACTGGGACGATT 59.748 55.000 0.00 0.00 0.00 3.34
458 459 1.339727 GGGTTGCTACTGGGACGATTT 60.340 52.381 0.00 0.00 0.00 2.17
459 460 2.433436 GGTTGCTACTGGGACGATTTT 58.567 47.619 0.00 0.00 0.00 1.82
460 461 2.817844 GGTTGCTACTGGGACGATTTTT 59.182 45.455 0.00 0.00 0.00 1.94
461 462 4.004982 GGTTGCTACTGGGACGATTTTTA 58.995 43.478 0.00 0.00 0.00 1.52
462 463 4.456566 GGTTGCTACTGGGACGATTTTTAA 59.543 41.667 0.00 0.00 0.00 1.52
463 464 5.388111 GTTGCTACTGGGACGATTTTTAAC 58.612 41.667 0.00 0.00 0.00 2.01
464 465 4.004982 TGCTACTGGGACGATTTTTAACC 58.995 43.478 0.00 0.00 0.00 2.85
465 466 3.063045 GCTACTGGGACGATTTTTAACCG 59.937 47.826 0.00 0.00 0.00 4.44
466 467 1.808343 ACTGGGACGATTTTTAACCGC 59.192 47.619 0.00 0.00 0.00 5.68
467 468 1.131693 CTGGGACGATTTTTAACCGCC 59.868 52.381 0.00 0.00 0.00 6.13
468 469 0.097499 GGGACGATTTTTAACCGCCG 59.903 55.000 0.00 0.00 0.00 6.46
469 470 1.077915 GGACGATTTTTAACCGCCGA 58.922 50.000 0.00 0.00 0.00 5.54
470 471 1.201954 GGACGATTTTTAACCGCCGAC 60.202 52.381 0.00 0.00 0.00 4.79
471 472 1.460359 GACGATTTTTAACCGCCGACA 59.540 47.619 0.00 0.00 0.00 4.35
472 473 1.195222 ACGATTTTTAACCGCCGACAC 59.805 47.619 0.00 0.00 0.00 3.67
473 474 1.461897 CGATTTTTAACCGCCGACACT 59.538 47.619 0.00 0.00 0.00 3.55
474 475 2.667481 CGATTTTTAACCGCCGACACTA 59.333 45.455 0.00 0.00 0.00 2.74
475 476 3.123284 CGATTTTTAACCGCCGACACTAA 59.877 43.478 0.00 0.00 0.00 2.24
476 477 4.377226 CGATTTTTAACCGCCGACACTAAA 60.377 41.667 0.00 0.00 0.00 1.85
477 478 4.889832 TTTTTAACCGCCGACACTAAAA 57.110 36.364 0.00 0.00 0.00 1.52
478 479 4.889832 TTTTAACCGCCGACACTAAAAA 57.110 36.364 0.00 0.00 0.00 1.94
495 496 2.561209 AAAAGACCTTTTGGGGGTGT 57.439 45.000 6.92 0.00 46.08 4.16
496 497 2.082140 AAAGACCTTTTGGGGGTGTC 57.918 50.000 0.00 0.00 46.08 3.67
497 498 1.231963 AAGACCTTTTGGGGGTGTCT 58.768 50.000 0.00 0.00 46.08 3.41
498 499 1.231963 AGACCTTTTGGGGGTGTCTT 58.768 50.000 0.00 0.00 46.08 3.01
499 500 1.133482 AGACCTTTTGGGGGTGTCTTG 60.133 52.381 0.00 0.00 46.08 3.02
500 501 0.105709 ACCTTTTGGGGGTGTCTTGG 60.106 55.000 0.00 0.00 46.08 3.61
501 502 0.831711 CCTTTTGGGGGTGTCTTGGG 60.832 60.000 0.00 0.00 35.46 4.12
502 503 0.831711 CTTTTGGGGGTGTCTTGGGG 60.832 60.000 0.00 0.00 0.00 4.96
503 504 2.319410 TTTTGGGGGTGTCTTGGGGG 62.319 60.000 0.00 0.00 0.00 5.40
512 513 4.431524 TCTTGGGGGCCGGGAGAT 62.432 66.667 2.18 0.00 0.00 2.75
513 514 4.195334 CTTGGGGGCCGGGAGATG 62.195 72.222 2.18 0.00 0.00 2.90
518 519 2.122989 GGGCCGGGAGATGGTCTA 60.123 66.667 2.18 0.00 0.00 2.59
529 530 7.069578 GCCGGGAGATGGTCTAATATATTTAGA 59.930 40.741 2.18 2.50 0.00 2.10
561 562 1.168714 GGCCTCTAGCAAAACAGTGG 58.831 55.000 0.00 0.00 46.50 4.00
603 606 1.476085 CATCCTTGACTGACTCGAGCT 59.524 52.381 13.61 0.00 0.00 4.09
604 607 1.169577 TCCTTGACTGACTCGAGCTC 58.830 55.000 13.61 2.73 0.00 4.09
605 608 0.179176 CCTTGACTGACTCGAGCTCG 60.179 60.000 30.03 30.03 41.45 5.03
619 622 2.049156 CTCGAGCACGGCAGTCAA 60.049 61.111 0.00 0.00 40.21 3.18
682 685 4.767928 GGTATGGTTTGGTTTGGTGACATA 59.232 41.667 0.00 0.00 42.32 2.29
686 689 6.978674 TGGTTTGGTTTGGTGACATAAATA 57.021 33.333 0.00 0.00 42.32 1.40
687 690 7.361457 TGGTTTGGTTTGGTGACATAAATAA 57.639 32.000 0.00 0.00 42.32 1.40
688 691 7.792032 TGGTTTGGTTTGGTGACATAAATAAA 58.208 30.769 0.00 0.00 42.32 1.40
689 692 8.432805 TGGTTTGGTTTGGTGACATAAATAAAT 58.567 29.630 0.00 0.00 42.32 1.40
690 693 8.716909 GGTTTGGTTTGGTGACATAAATAAATG 58.283 33.333 0.00 0.00 42.32 2.32
758 761 3.036091 AGGTCGTATTTAGGCTAGCCAA 58.964 45.455 34.70 21.76 38.92 4.52
761 764 4.377897 GTCGTATTTAGGCTAGCCAACAT 58.622 43.478 34.70 23.18 38.92 2.71
789 792 4.922692 TGAAACGCAATGAATGGATTTGAC 59.077 37.500 0.00 0.00 0.00 3.18
791 794 2.487762 ACGCAATGAATGGATTTGACGT 59.512 40.909 0.00 0.00 32.47 4.34
792 795 3.687212 ACGCAATGAATGGATTTGACGTA 59.313 39.130 0.00 0.00 34.15 3.57
793 796 4.028383 CGCAATGAATGGATTTGACGTAC 58.972 43.478 0.00 0.00 0.00 3.67
794 797 4.201812 CGCAATGAATGGATTTGACGTACT 60.202 41.667 0.00 0.00 0.00 2.73
795 798 5.006261 CGCAATGAATGGATTTGACGTACTA 59.994 40.000 0.00 0.00 0.00 1.82
797 800 6.037172 GCAATGAATGGATTTGACGTACTACT 59.963 38.462 0.00 0.00 0.00 2.57
798 801 7.223971 GCAATGAATGGATTTGACGTACTACTA 59.776 37.037 0.00 0.00 0.00 1.82
799 802 8.540492 CAATGAATGGATTTGACGTACTACTAC 58.460 37.037 0.00 0.00 0.00 2.73
800 803 7.400599 TGAATGGATTTGACGTACTACTACT 57.599 36.000 0.00 0.00 0.00 2.57
801 804 7.478322 TGAATGGATTTGACGTACTACTACTC 58.522 38.462 0.00 0.00 0.00 2.59
905 2678 1.746615 AGTCTGCATGCGCCGAAAT 60.747 52.632 14.09 0.00 37.32 2.17
933 2706 4.632153 CATAAATCCTACCCTCTCCAACG 58.368 47.826 0.00 0.00 0.00 4.10
938 2711 0.108615 CTACCCTCTCCAACGCACAG 60.109 60.000 0.00 0.00 0.00 3.66
961 2737 1.236026 TCCACTCCCCACTCCCCTAT 61.236 60.000 0.00 0.00 0.00 2.57
989 2765 2.609825 GTGCACTCCACACACTCTG 58.390 57.895 10.32 0.00 44.06 3.35
1044 2824 1.379576 AAGAAGGATGCAGGGCAGC 60.380 57.895 0.00 0.00 43.65 5.25
1081 2861 2.591429 TGGTGTCGTTGCTGCTGG 60.591 61.111 0.00 0.00 0.00 4.85
1910 3698 2.046864 TCGAGTCCCTCAAGGCGAG 61.047 63.158 0.00 0.00 41.89 5.03
2003 3791 0.613853 TACGGGTTCAGGGAGTCCAG 60.614 60.000 12.30 2.73 34.83 3.86
2142 3930 0.757188 AGGCCTACAGGATCCTCGTG 60.757 60.000 12.69 4.37 38.16 4.35
2313 4103 9.362539 AGCAATTGTCAATTATTGTTGATCTTC 57.637 29.630 10.46 0.00 39.99 2.87
2345 4135 1.880340 CGGCTTGAGATCGGACAGC 60.880 63.158 1.79 1.79 0.00 4.40
2353 4143 0.392193 AGATCGGACAGCCAGCTTTG 60.392 55.000 0.00 0.00 0.00 2.77
2384 4174 2.094675 ACCTGCCTGCAATAACATGAC 58.905 47.619 0.00 0.00 0.00 3.06
2385 4175 2.291153 ACCTGCCTGCAATAACATGACT 60.291 45.455 0.00 0.00 0.00 3.41
2387 4177 2.357009 CTGCCTGCAATAACATGACTCC 59.643 50.000 0.00 0.00 0.00 3.85
2389 4179 2.357009 GCCTGCAATAACATGACTCCTG 59.643 50.000 0.00 0.00 0.00 3.86
2390 4180 3.877559 CCTGCAATAACATGACTCCTGA 58.122 45.455 0.00 0.00 0.00 3.86
2396 4186 0.908198 AACATGACTCCTGAGAGGGC 59.092 55.000 0.00 0.00 45.11 5.19
2401 4191 1.203237 TGACTCCTGAGAGGGCTTTCT 60.203 52.381 0.22 0.00 45.11 2.52
2412 4202 3.389002 AGAGGGCTTTCTGCAATGTTTTT 59.611 39.130 0.00 0.00 45.15 1.94
2874 4664 3.818787 GAAGACGAGCCGGCGGTA 61.819 66.667 28.82 0.00 41.28 4.02
2875 4665 3.753070 GAAGACGAGCCGGCGGTAG 62.753 68.421 28.82 20.37 41.28 3.18
2876 4666 4.790962 AGACGAGCCGGCGGTAGA 62.791 66.667 28.82 0.00 41.28 2.59
2877 4667 3.818787 GACGAGCCGGCGGTAGAA 61.819 66.667 28.82 0.00 35.12 2.10
2878 4668 3.135056 GACGAGCCGGCGGTAGAAT 62.135 63.158 28.82 9.75 35.12 2.40
2879 4669 2.354773 CGAGCCGGCGGTAGAATC 60.355 66.667 28.82 15.99 0.00 2.52
2880 4670 2.354773 GAGCCGGCGGTAGAATCG 60.355 66.667 28.82 0.00 0.00 3.34
2881 4671 2.831742 AGCCGGCGGTAGAATCGA 60.832 61.111 28.82 0.00 0.00 3.59
2882 4672 2.354773 GCCGGCGGTAGAATCGAG 60.355 66.667 28.82 0.00 0.00 4.04
2883 4673 3.117372 CCGGCGGTAGAATCGAGT 58.883 61.111 19.97 0.00 0.00 4.18
2884 4674 1.008767 CCGGCGGTAGAATCGAGTC 60.009 63.158 19.97 4.34 0.00 3.36
2885 4675 1.445716 CCGGCGGTAGAATCGAGTCT 61.446 60.000 20.32 20.32 0.00 3.24
2886 4676 0.317103 CGGCGGTAGAATCGAGTCTG 60.317 60.000 24.69 9.81 0.00 3.51
2887 4677 0.030908 GGCGGTAGAATCGAGTCTGG 59.969 60.000 24.69 14.40 0.00 3.86
2888 4678 0.030908 GCGGTAGAATCGAGTCTGGG 59.969 60.000 24.69 14.07 0.00 4.45
2889 4679 0.669077 CGGTAGAATCGAGTCTGGGG 59.331 60.000 24.69 9.67 0.00 4.96
2890 4680 1.041437 GGTAGAATCGAGTCTGGGGG 58.959 60.000 24.69 0.00 0.00 5.40
2891 4681 0.389757 GTAGAATCGAGTCTGGGGGC 59.610 60.000 24.69 6.56 0.00 5.80
2892 4682 1.107538 TAGAATCGAGTCTGGGGGCG 61.108 60.000 24.69 0.00 0.00 6.13
2893 4683 3.447025 GAATCGAGTCTGGGGGCGG 62.447 68.421 5.45 0.00 0.00 6.13
2894 4684 4.779733 ATCGAGTCTGGGGGCGGT 62.780 66.667 0.00 0.00 0.00 5.68
2896 4686 2.866523 ATCGAGTCTGGGGGCGGTTA 62.867 60.000 0.00 0.00 0.00 2.85
2897 4687 2.901042 GAGTCTGGGGGCGGTTAG 59.099 66.667 0.00 0.00 0.00 2.34
2898 4688 2.687566 AGTCTGGGGGCGGTTAGG 60.688 66.667 0.00 0.00 0.00 2.69
2899 4689 4.484872 GTCTGGGGGCGGTTAGGC 62.485 72.222 0.00 0.00 45.91 3.93
2906 4696 2.902343 GGCGGTTAGGCATCCAGC 60.902 66.667 0.00 0.00 45.92 4.85
2916 4706 4.530857 CATCCAGCCGTCGTCCCC 62.531 72.222 0.00 0.00 0.00 4.81
2920 4710 4.436998 CAGCCGTCGTCCCCAGAC 62.437 72.222 0.00 0.00 39.83 3.51
2928 4718 3.456317 GTCCCCAGACGCCGATAT 58.544 61.111 0.00 0.00 32.18 1.63
2929 4719 1.289380 GTCCCCAGACGCCGATATC 59.711 63.158 0.00 0.00 32.18 1.63
2930 4720 2.258591 CCCCAGACGCCGATATCG 59.741 66.667 18.31 18.31 39.44 2.92
2941 4731 3.143675 CGATATCGGCCCATTCCTG 57.856 57.895 17.51 0.00 35.37 3.86
2942 4732 0.391661 CGATATCGGCCCATTCCTGG 60.392 60.000 17.51 0.00 37.76 4.45
2949 4739 4.447342 CCCATTCCTGGCCGCCTT 62.447 66.667 11.61 0.00 41.64 4.35
2950 4740 2.362889 CCATTCCTGGCCGCCTTT 60.363 61.111 11.61 0.00 35.23 3.11
2951 4741 2.418083 CCATTCCTGGCCGCCTTTC 61.418 63.158 11.61 0.00 35.23 2.62
2952 4742 2.438434 ATTCCTGGCCGCCTTTCG 60.438 61.111 11.61 0.00 38.08 3.46
2964 4754 2.736890 CCTTTCGGCGAAAAATGGC 58.263 52.632 31.70 0.00 30.84 4.40
2965 4755 0.735978 CCTTTCGGCGAAAAATGGCC 60.736 55.000 31.70 0.00 45.95 5.36
2966 4756 0.735978 CTTTCGGCGAAAAATGGCCC 60.736 55.000 31.70 0.00 46.73 5.80
2967 4757 2.479412 TTTCGGCGAAAAATGGCCCG 62.479 55.000 30.62 0.00 46.73 6.13
2968 4758 3.436055 CGGCGAAAAATGGCCCGA 61.436 61.111 0.00 0.00 46.73 5.14
2969 4759 2.770589 CGGCGAAAAATGGCCCGAT 61.771 57.895 0.00 0.00 46.73 4.18
2970 4760 1.440938 CGGCGAAAAATGGCCCGATA 61.441 55.000 0.00 0.00 46.73 2.92
2971 4761 0.958822 GGCGAAAAATGGCCCGATAT 59.041 50.000 0.00 0.00 43.64 1.63
2972 4762 1.068541 GGCGAAAAATGGCCCGATATC 60.069 52.381 0.00 0.00 43.64 1.63
2973 4763 1.399727 GCGAAAAATGGCCCGATATCG 60.400 52.381 18.31 18.31 39.44 2.92
2983 4773 2.979808 CGATATCGGCGCGAATCG 59.020 61.111 17.51 18.58 39.99 3.34
2984 4774 2.497092 CGATATCGGCGCGAATCGG 61.497 63.158 17.51 0.00 39.97 4.18
2985 4775 2.126071 ATATCGGCGCGAATCGGG 60.126 61.111 12.10 15.49 39.99 5.14
2992 4782 3.966215 CGCGAATCGGGCCATATT 58.034 55.556 4.39 2.74 32.44 1.28
2993 4783 1.787847 CGCGAATCGGGCCATATTC 59.212 57.895 15.86 15.86 32.44 1.75
2995 4785 2.456000 CGAATCGGGCCATATTCGG 58.544 57.895 29.95 18.27 46.63 4.30
3002 4792 3.821995 GCCATATTCGGCGTGGTT 58.178 55.556 14.63 0.00 43.52 3.67
3003 4793 1.647084 GCCATATTCGGCGTGGTTC 59.353 57.895 14.63 0.00 43.52 3.62
3004 4794 1.931551 CCATATTCGGCGTGGTTCG 59.068 57.895 6.85 0.00 43.12 3.95
3013 4803 3.273834 CGTGGTTCGCCGTGGTTT 61.274 61.111 0.00 0.00 41.18 3.27
3014 4804 2.825975 CGTGGTTCGCCGTGGTTTT 61.826 57.895 0.00 0.00 41.18 2.43
3015 4805 1.434287 GTGGTTCGCCGTGGTTTTT 59.566 52.632 0.00 0.00 41.18 1.94
3016 4806 0.662085 GTGGTTCGCCGTGGTTTTTA 59.338 50.000 0.00 0.00 41.18 1.52
3017 4807 1.267533 GTGGTTCGCCGTGGTTTTTAT 59.732 47.619 0.00 0.00 41.18 1.40
3018 4808 1.267261 TGGTTCGCCGTGGTTTTTATG 59.733 47.619 0.00 0.00 41.18 1.90
3019 4809 1.267533 GGTTCGCCGTGGTTTTTATGT 59.732 47.619 0.00 0.00 0.00 2.29
3020 4810 2.577450 GTTCGCCGTGGTTTTTATGTC 58.423 47.619 0.00 0.00 0.00 3.06
3021 4811 1.880271 TCGCCGTGGTTTTTATGTCA 58.120 45.000 0.00 0.00 0.00 3.58
3022 4812 1.532007 TCGCCGTGGTTTTTATGTCAC 59.468 47.619 0.00 0.00 0.00 3.67
3023 4813 1.264557 CGCCGTGGTTTTTATGTCACA 59.735 47.619 0.00 0.00 0.00 3.58
3024 4814 2.095466 CGCCGTGGTTTTTATGTCACAT 60.095 45.455 0.00 0.00 0.00 3.21
3025 4815 3.125487 CGCCGTGGTTTTTATGTCACATA 59.875 43.478 0.00 0.00 0.00 2.29
3026 4816 4.201871 CGCCGTGGTTTTTATGTCACATAT 60.202 41.667 0.00 0.00 0.00 1.78
3027 4817 5.646606 GCCGTGGTTTTTATGTCACATATT 58.353 37.500 0.00 0.00 0.00 1.28
3028 4818 6.096695 GCCGTGGTTTTTATGTCACATATTT 58.903 36.000 0.00 0.00 0.00 1.40
3029 4819 7.251994 GCCGTGGTTTTTATGTCACATATTTA 58.748 34.615 0.00 0.00 0.00 1.40
3030 4820 7.918562 GCCGTGGTTTTTATGTCACATATTTAT 59.081 33.333 0.00 0.00 0.00 1.40
3031 4821 9.445786 CCGTGGTTTTTATGTCACATATTTATC 57.554 33.333 0.00 0.00 0.00 1.75
3032 4822 9.995957 CGTGGTTTTTATGTCACATATTTATCA 57.004 29.630 0.00 0.00 0.00 2.15
3125 4915 8.506140 AAAAACTCATATTTCATCACACGTTG 57.494 30.769 0.00 0.00 0.00 4.10
3126 4916 6.801539 AACTCATATTTCATCACACGTTGT 57.198 33.333 0.00 0.00 0.00 3.32
3127 4917 6.408858 ACTCATATTTCATCACACGTTGTC 57.591 37.500 0.00 0.00 0.00 3.18
3128 4918 5.931724 ACTCATATTTCATCACACGTTGTCA 59.068 36.000 0.00 0.00 0.00 3.58
3129 4919 6.128553 ACTCATATTTCATCACACGTTGTCAC 60.129 38.462 0.00 0.00 0.00 3.67
3141 4931 2.095384 GTTGTCACGACCGGTTTTTC 57.905 50.000 9.42 0.00 0.00 2.29
3142 4932 1.397692 GTTGTCACGACCGGTTTTTCA 59.602 47.619 9.42 2.23 0.00 2.69
3143 4933 1.735386 TGTCACGACCGGTTTTTCAA 58.265 45.000 9.42 0.00 0.00 2.69
3144 4934 2.290464 TGTCACGACCGGTTTTTCAAT 58.710 42.857 9.42 0.00 0.00 2.57
3145 4935 3.464907 TGTCACGACCGGTTTTTCAATA 58.535 40.909 9.42 0.00 0.00 1.90
3146 4936 3.875727 TGTCACGACCGGTTTTTCAATAA 59.124 39.130 9.42 0.00 0.00 1.40
3147 4937 4.334759 TGTCACGACCGGTTTTTCAATAAA 59.665 37.500 9.42 0.00 0.00 1.40
3148 4938 5.163683 TGTCACGACCGGTTTTTCAATAAAA 60.164 36.000 9.42 0.00 32.75 1.52
3149 4939 5.916320 GTCACGACCGGTTTTTCAATAAAAT 59.084 36.000 9.42 0.00 34.62 1.82
3150 4940 7.076983 GTCACGACCGGTTTTTCAATAAAATA 58.923 34.615 9.42 0.00 34.62 1.40
3151 4941 7.590689 GTCACGACCGGTTTTTCAATAAAATAA 59.409 33.333 9.42 0.00 34.62 1.40
3152 4942 8.298140 TCACGACCGGTTTTTCAATAAAATAAT 58.702 29.630 9.42 0.00 34.62 1.28
3153 4943 8.917655 CACGACCGGTTTTTCAATAAAATAATT 58.082 29.630 9.42 0.00 34.62 1.40
3171 4961 9.942526 AAAATAATTATTGAGAGACCAATCCCT 57.057 29.630 11.42 0.00 37.81 4.20
3172 4962 9.942526 AAATAATTATTGAGAGACCAATCCCTT 57.057 29.630 11.42 0.00 37.81 3.95
3173 4963 9.942526 AATAATTATTGAGAGACCAATCCCTTT 57.057 29.630 9.93 0.00 37.81 3.11
3174 4964 9.942526 ATAATTATTGAGAGACCAATCCCTTTT 57.057 29.630 0.00 0.00 37.81 2.27
3176 4966 8.753497 ATTATTGAGAGACCAATCCCTTTTAC 57.247 34.615 0.00 0.00 37.81 2.01
3177 4967 4.202245 TGAGAGACCAATCCCTTTTACG 57.798 45.455 0.00 0.00 0.00 3.18
3178 4968 3.055385 TGAGAGACCAATCCCTTTTACGG 60.055 47.826 0.00 0.00 0.00 4.02
3179 4969 3.178865 AGAGACCAATCCCTTTTACGGA 58.821 45.455 0.00 0.00 0.00 4.69
3180 4970 3.055312 AGAGACCAATCCCTTTTACGGAC 60.055 47.826 0.00 0.00 30.39 4.79
3181 4971 2.026542 AGACCAATCCCTTTTACGGACC 60.027 50.000 0.00 0.00 30.39 4.46
3182 4972 1.706305 ACCAATCCCTTTTACGGACCA 59.294 47.619 0.00 0.00 30.39 4.02
3183 4973 2.290705 ACCAATCCCTTTTACGGACCAG 60.291 50.000 0.00 0.00 30.39 4.00
3184 4974 1.743394 CAATCCCTTTTACGGACCAGC 59.257 52.381 0.00 0.00 30.39 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.821589 CTCCTCCCGCAAGACGCC 62.822 72.222 0.00 0.00 41.76 5.68
14 15 4.821589 CCTCCTCCCGCAAGACGC 62.822 72.222 0.00 0.00 41.76 5.19
15 16 3.382832 ACCTCCTCCCGCAAGACG 61.383 66.667 0.00 0.00 43.15 4.18
16 17 2.266055 CACCTCCTCCCGCAAGAC 59.734 66.667 0.00 0.00 43.02 3.01
17 18 3.003173 CCACCTCCTCCCGCAAGA 61.003 66.667 0.00 0.00 43.02 3.02
18 19 3.322466 ACCACCTCCTCCCGCAAG 61.322 66.667 0.00 0.00 0.00 4.01
19 20 3.636231 CACCACCTCCTCCCGCAA 61.636 66.667 0.00 0.00 0.00 4.85
22 23 3.077556 CTCCACCACCTCCTCCCG 61.078 72.222 0.00 0.00 0.00 5.14
23 24 2.689034 CCTCCACCACCTCCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
24 25 1.687493 CTCCTCCACCACCTCCTCC 60.687 68.421 0.00 0.00 0.00 4.30
25 26 0.031616 ATCTCCTCCACCACCTCCTC 60.032 60.000 0.00 0.00 0.00 3.71
26 27 0.031616 GATCTCCTCCACCACCTCCT 60.032 60.000 0.00 0.00 0.00 3.69
27 28 0.031616 AGATCTCCTCCACCACCTCC 60.032 60.000 0.00 0.00 0.00 4.30
28 29 1.484240 CAAGATCTCCTCCACCACCTC 59.516 57.143 0.00 0.00 0.00 3.85
29 30 1.577736 CAAGATCTCCTCCACCACCT 58.422 55.000 0.00 0.00 0.00 4.00
30 31 0.543749 CCAAGATCTCCTCCACCACC 59.456 60.000 0.00 0.00 0.00 4.61
31 32 0.543749 CCCAAGATCTCCTCCACCAC 59.456 60.000 0.00 0.00 0.00 4.16
32 33 1.274703 GCCCAAGATCTCCTCCACCA 61.275 60.000 0.00 0.00 0.00 4.17
33 34 1.529309 GCCCAAGATCTCCTCCACC 59.471 63.158 0.00 0.00 0.00 4.61
34 35 1.144936 CGCCCAAGATCTCCTCCAC 59.855 63.158 0.00 0.00 0.00 4.02
35 36 1.306141 ACGCCCAAGATCTCCTCCA 60.306 57.895 0.00 0.00 0.00 3.86
36 37 1.144936 CACGCCCAAGATCTCCTCC 59.855 63.158 0.00 0.00 0.00 4.30
37 38 1.144936 CCACGCCCAAGATCTCCTC 59.855 63.158 0.00 0.00 0.00 3.71
38 39 3.036429 GCCACGCCCAAGATCTCCT 62.036 63.158 0.00 0.00 0.00 3.69
39 40 2.514824 GCCACGCCCAAGATCTCC 60.515 66.667 0.00 0.00 0.00 3.71
40 41 2.514824 GGCCACGCCCAAGATCTC 60.515 66.667 0.00 0.00 44.06 2.75
60 61 4.516195 GAGGGAGGAAGCGGTCGC 62.516 72.222 7.32 7.32 42.33 5.19
61 62 4.194720 CGAGGGAGGAAGCGGTCG 62.195 72.222 0.00 0.00 0.00 4.79
62 63 2.754658 TCGAGGGAGGAAGCGGTC 60.755 66.667 0.00 0.00 0.00 4.79
63 64 3.069318 GTCGAGGGAGGAAGCGGT 61.069 66.667 0.00 0.00 0.00 5.68
64 65 4.194720 CGTCGAGGGAGGAAGCGG 62.195 72.222 0.00 0.00 0.00 5.52
65 66 4.856607 GCGTCGAGGGAGGAAGCG 62.857 72.222 7.31 0.00 0.00 4.68
66 67 4.516195 GGCGTCGAGGGAGGAAGC 62.516 72.222 7.31 0.00 38.03 3.86
67 68 4.194720 CGGCGTCGAGGGAGGAAG 62.195 72.222 1.44 0.00 39.00 3.46
93 94 4.489771 CACCCCCGGACTGCATCC 62.490 72.222 0.73 5.39 45.20 3.51
116 117 3.691342 TCGAAGAGCACCACCCGG 61.691 66.667 0.00 0.00 38.77 5.73
117 118 2.432628 GTCGAAGAGCACCACCCG 60.433 66.667 0.00 0.00 36.95 5.28
126 127 0.389166 GTGCAGACCAGGTCGAAGAG 60.389 60.000 14.32 4.55 36.95 2.85
127 128 1.666011 GTGCAGACCAGGTCGAAGA 59.334 57.895 14.32 0.00 37.67 2.87
128 129 1.734477 CGTGCAGACCAGGTCGAAG 60.734 63.158 14.32 9.39 37.67 3.79
129 130 2.338620 CGTGCAGACCAGGTCGAA 59.661 61.111 14.32 0.90 37.67 3.71
130 131 3.680786 CCGTGCAGACCAGGTCGA 61.681 66.667 14.32 0.00 37.67 4.20
201 202 3.958147 ATCCTCACAAGCGTGGCCG 62.958 63.158 4.26 0.00 43.79 6.13
202 203 2.045926 ATCCTCACAAGCGTGGCC 60.046 61.111 4.26 0.00 43.79 5.36
203 204 2.401766 CCATCCTCACAAGCGTGGC 61.402 63.158 4.26 0.00 43.79 5.01
204 205 1.746615 CCCATCCTCACAAGCGTGG 60.747 63.158 4.26 0.00 43.79 4.94
205 206 1.021390 GTCCCATCCTCACAAGCGTG 61.021 60.000 0.00 0.00 45.08 5.34
206 207 1.296715 GTCCCATCCTCACAAGCGT 59.703 57.895 0.00 0.00 0.00 5.07
207 208 1.450312 GGTCCCATCCTCACAAGCG 60.450 63.158 0.00 0.00 0.00 4.68
208 209 0.393537 CAGGTCCCATCCTCACAAGC 60.394 60.000 0.00 0.00 35.37 4.01
209 210 0.254178 CCAGGTCCCATCCTCACAAG 59.746 60.000 0.00 0.00 35.37 3.16
210 211 0.178876 TCCAGGTCCCATCCTCACAA 60.179 55.000 0.00 0.00 35.37 3.33
211 212 0.618680 CTCCAGGTCCCATCCTCACA 60.619 60.000 0.00 0.00 35.37 3.58
212 213 0.325671 TCTCCAGGTCCCATCCTCAC 60.326 60.000 0.00 0.00 35.37 3.51
213 214 0.417437 TTCTCCAGGTCCCATCCTCA 59.583 55.000 0.00 0.00 35.37 3.86
214 215 1.584724 TTTCTCCAGGTCCCATCCTC 58.415 55.000 0.00 0.00 35.37 3.71
215 216 2.059756 TTTTCTCCAGGTCCCATCCT 57.940 50.000 0.00 0.00 38.51 3.24
216 217 2.621668 CCTTTTTCTCCAGGTCCCATCC 60.622 54.545 0.00 0.00 0.00 3.51
217 218 2.308866 TCCTTTTTCTCCAGGTCCCATC 59.691 50.000 0.00 0.00 0.00 3.51
218 219 2.358258 TCCTTTTTCTCCAGGTCCCAT 58.642 47.619 0.00 0.00 0.00 4.00
219 220 1.827792 TCCTTTTTCTCCAGGTCCCA 58.172 50.000 0.00 0.00 0.00 4.37
220 221 2.555448 CCTTCCTTTTTCTCCAGGTCCC 60.555 54.545 0.00 0.00 0.00 4.46
221 222 2.375509 TCCTTCCTTTTTCTCCAGGTCC 59.624 50.000 0.00 0.00 0.00 4.46
222 223 3.328050 TCTCCTTCCTTTTTCTCCAGGTC 59.672 47.826 0.00 0.00 0.00 3.85
223 224 3.327439 TCTCCTTCCTTTTTCTCCAGGT 58.673 45.455 0.00 0.00 0.00 4.00
224 225 3.329225 ACTCTCCTTCCTTTTTCTCCAGG 59.671 47.826 0.00 0.00 0.00 4.45
225 226 4.322567 CACTCTCCTTCCTTTTTCTCCAG 58.677 47.826 0.00 0.00 0.00 3.86
226 227 3.073062 CCACTCTCCTTCCTTTTTCTCCA 59.927 47.826 0.00 0.00 0.00 3.86
227 228 3.560239 CCCACTCTCCTTCCTTTTTCTCC 60.560 52.174 0.00 0.00 0.00 3.71
228 229 3.560239 CCCCACTCTCCTTCCTTTTTCTC 60.560 52.174 0.00 0.00 0.00 2.87
229 230 2.376855 CCCCACTCTCCTTCCTTTTTCT 59.623 50.000 0.00 0.00 0.00 2.52
230 231 2.555448 CCCCCACTCTCCTTCCTTTTTC 60.555 54.545 0.00 0.00 0.00 2.29
231 232 1.429299 CCCCCACTCTCCTTCCTTTTT 59.571 52.381 0.00 0.00 0.00 1.94
232 233 1.076438 CCCCCACTCTCCTTCCTTTT 58.924 55.000 0.00 0.00 0.00 2.27
233 234 0.103876 ACCCCCACTCTCCTTCCTTT 60.104 55.000 0.00 0.00 0.00 3.11
234 235 0.842467 CACCCCCACTCTCCTTCCTT 60.842 60.000 0.00 0.00 0.00 3.36
235 236 1.229658 CACCCCCACTCTCCTTCCT 60.230 63.158 0.00 0.00 0.00 3.36
236 237 2.301738 CCACCCCCACTCTCCTTCC 61.302 68.421 0.00 0.00 0.00 3.46
237 238 2.301738 CCCACCCCCACTCTCCTTC 61.302 68.421 0.00 0.00 0.00 3.46
238 239 2.204151 CCCACCCCCACTCTCCTT 60.204 66.667 0.00 0.00 0.00 3.36
239 240 3.208592 TCCCACCCCCACTCTCCT 61.209 66.667 0.00 0.00 0.00 3.69
240 241 2.689034 CTCCCACCCCCACTCTCC 60.689 72.222 0.00 0.00 0.00 3.71
241 242 2.689034 CCTCCCACCCCCACTCTC 60.689 72.222 0.00 0.00 0.00 3.20
260 261 3.936203 TCCCACCCTCACGTGCAC 61.936 66.667 11.67 6.82 32.10 4.57
261 262 3.936203 GTCCCACCCTCACGTGCA 61.936 66.667 11.67 0.00 32.10 4.57
262 263 3.254024 ATGTCCCACCCTCACGTGC 62.254 63.158 11.67 0.00 32.10 5.34
263 264 1.375908 CATGTCCCACCCTCACGTG 60.376 63.158 9.94 9.94 0.00 4.49
264 265 2.592993 CCATGTCCCACCCTCACGT 61.593 63.158 0.00 0.00 0.00 4.49
265 266 2.244117 CTCCATGTCCCACCCTCACG 62.244 65.000 0.00 0.00 0.00 4.35
266 267 0.909610 TCTCCATGTCCCACCCTCAC 60.910 60.000 0.00 0.00 0.00 3.51
267 268 0.178876 TTCTCCATGTCCCACCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
268 269 0.991920 TTTCTCCATGTCCCACCCTC 59.008 55.000 0.00 0.00 0.00 4.30
269 270 1.455822 TTTTCTCCATGTCCCACCCT 58.544 50.000 0.00 0.00 0.00 4.34
270 271 2.302587 TTTTTCTCCATGTCCCACCC 57.697 50.000 0.00 0.00 0.00 4.61
271 272 3.430453 TCATTTTTCTCCATGTCCCACC 58.570 45.455 0.00 0.00 0.00 4.61
272 273 4.082026 CCTTCATTTTTCTCCATGTCCCAC 60.082 45.833 0.00 0.00 0.00 4.61
273 274 4.088634 CCTTCATTTTTCTCCATGTCCCA 58.911 43.478 0.00 0.00 0.00 4.37
274 275 4.344104 TCCTTCATTTTTCTCCATGTCCC 58.656 43.478 0.00 0.00 0.00 4.46
275 276 5.256474 TCTCCTTCATTTTTCTCCATGTCC 58.744 41.667 0.00 0.00 0.00 4.02
276 277 6.176183 TCTCTCCTTCATTTTTCTCCATGTC 58.824 40.000 0.00 0.00 0.00 3.06
277 278 6.131972 TCTCTCCTTCATTTTTCTCCATGT 57.868 37.500 0.00 0.00 0.00 3.21
278 279 5.589452 CCTCTCTCCTTCATTTTTCTCCATG 59.411 44.000 0.00 0.00 0.00 3.66
279 280 5.339861 CCCTCTCTCCTTCATTTTTCTCCAT 60.340 44.000 0.00 0.00 0.00 3.41
280 281 4.018960 CCCTCTCTCCTTCATTTTTCTCCA 60.019 45.833 0.00 0.00 0.00 3.86
281 282 4.522114 CCCTCTCTCCTTCATTTTTCTCC 58.478 47.826 0.00 0.00 0.00 3.71
282 283 4.522114 CCCCTCTCTCCTTCATTTTTCTC 58.478 47.826 0.00 0.00 0.00 2.87
283 284 3.268072 CCCCCTCTCTCCTTCATTTTTCT 59.732 47.826 0.00 0.00 0.00 2.52
284 285 3.010696 ACCCCCTCTCTCCTTCATTTTTC 59.989 47.826 0.00 0.00 0.00 2.29
285 286 2.996742 ACCCCCTCTCTCCTTCATTTTT 59.003 45.455 0.00 0.00 0.00 1.94
286 287 2.310052 CACCCCCTCTCTCCTTCATTTT 59.690 50.000 0.00 0.00 0.00 1.82
287 288 1.918957 CACCCCCTCTCTCCTTCATTT 59.081 52.381 0.00 0.00 0.00 2.32
288 289 1.081174 TCACCCCCTCTCTCCTTCATT 59.919 52.381 0.00 0.00 0.00 2.57
289 290 0.719015 TCACCCCCTCTCTCCTTCAT 59.281 55.000 0.00 0.00 0.00 2.57
290 291 0.041833 CTCACCCCCTCTCTCCTTCA 59.958 60.000 0.00 0.00 0.00 3.02
291 292 0.336737 TCTCACCCCCTCTCTCCTTC 59.663 60.000 0.00 0.00 0.00 3.46
292 293 0.338120 CTCTCACCCCCTCTCTCCTT 59.662 60.000 0.00 0.00 0.00 3.36
293 294 2.015081 CTCTCACCCCCTCTCTCCT 58.985 63.158 0.00 0.00 0.00 3.69
294 295 1.760480 GCTCTCACCCCCTCTCTCC 60.760 68.421 0.00 0.00 0.00 3.71
295 296 1.760480 GGCTCTCACCCCCTCTCTC 60.760 68.421 0.00 0.00 0.00 3.20
296 297 2.252898 AGGCTCTCACCCCCTCTCT 61.253 63.158 0.00 0.00 0.00 3.10
297 298 2.063378 CAGGCTCTCACCCCCTCTC 61.063 68.421 0.00 0.00 0.00 3.20
298 299 2.040278 CAGGCTCTCACCCCCTCT 59.960 66.667 0.00 0.00 0.00 3.69
299 300 2.039624 TCAGGCTCTCACCCCCTC 59.960 66.667 0.00 0.00 0.00 4.30
300 301 2.284995 GTCAGGCTCTCACCCCCT 60.285 66.667 0.00 0.00 0.00 4.79
301 302 2.284995 AGTCAGGCTCTCACCCCC 60.285 66.667 0.00 0.00 0.00 5.40
302 303 1.915769 ACAGTCAGGCTCTCACCCC 60.916 63.158 0.00 0.00 0.00 4.95
303 304 1.294780 CACAGTCAGGCTCTCACCC 59.705 63.158 0.00 0.00 0.00 4.61
304 305 1.294780 CCACAGTCAGGCTCTCACC 59.705 63.158 0.00 0.00 0.00 4.02
305 306 1.294780 CCCACAGTCAGGCTCTCAC 59.705 63.158 0.00 0.00 0.00 3.51
306 307 2.587247 GCCCACAGTCAGGCTCTCA 61.587 63.158 4.10 0.00 46.14 3.27
307 308 2.267324 GCCCACAGTCAGGCTCTC 59.733 66.667 4.10 0.00 46.14 3.20
312 313 1.880819 GCAATTGGCCCACAGTCAGG 61.881 60.000 7.72 0.00 36.11 3.86
313 314 1.180456 TGCAATTGGCCCACAGTCAG 61.180 55.000 7.72 0.00 43.89 3.51
314 315 0.542467 ATGCAATTGGCCCACAGTCA 60.542 50.000 7.72 0.00 43.89 3.41
315 316 0.108520 CATGCAATTGGCCCACAGTC 60.109 55.000 7.72 0.00 43.89 3.51
316 317 0.832983 ACATGCAATTGGCCCACAGT 60.833 50.000 7.72 0.00 43.89 3.55
317 318 1.184431 TACATGCAATTGGCCCACAG 58.816 50.000 7.72 0.00 43.89 3.66
318 319 1.637338 TTACATGCAATTGGCCCACA 58.363 45.000 7.72 0.00 43.89 4.17
319 320 2.028203 ACTTTACATGCAATTGGCCCAC 60.028 45.455 7.72 0.00 43.89 4.61
320 321 2.233431 GACTTTACATGCAATTGGCCCA 59.767 45.455 7.72 0.00 43.89 5.36
321 322 2.497273 AGACTTTACATGCAATTGGCCC 59.503 45.455 7.72 0.00 43.89 5.80
322 323 3.874392 AGACTTTACATGCAATTGGCC 57.126 42.857 7.72 0.00 43.89 5.36
323 324 5.064441 AGAAGACTTTACATGCAATTGGC 57.936 39.130 7.72 0.15 45.13 4.52
324 325 6.373774 AGAGAGAAGACTTTACATGCAATTGG 59.626 38.462 7.72 0.00 0.00 3.16
325 326 7.375106 AGAGAGAAGACTTTACATGCAATTG 57.625 36.000 0.00 0.00 0.00 2.32
326 327 6.597280 GGAGAGAGAAGACTTTACATGCAATT 59.403 38.462 0.00 0.00 0.00 2.32
327 328 6.112058 GGAGAGAGAAGACTTTACATGCAAT 58.888 40.000 0.00 0.00 0.00 3.56
328 329 5.482908 GGAGAGAGAAGACTTTACATGCAA 58.517 41.667 0.00 0.00 0.00 4.08
329 330 4.380973 CGGAGAGAGAAGACTTTACATGCA 60.381 45.833 0.00 0.00 0.00 3.96
330 331 4.109050 CGGAGAGAGAAGACTTTACATGC 58.891 47.826 0.00 0.00 0.00 4.06
331 332 4.109050 GCGGAGAGAGAAGACTTTACATG 58.891 47.826 0.00 0.00 0.00 3.21
332 333 4.020543 AGCGGAGAGAGAAGACTTTACAT 58.979 43.478 0.00 0.00 0.00 2.29
333 334 3.422796 AGCGGAGAGAGAAGACTTTACA 58.577 45.455 0.00 0.00 0.00 2.41
334 335 3.181494 GGAGCGGAGAGAGAAGACTTTAC 60.181 52.174 0.00 0.00 0.00 2.01
335 336 3.018149 GGAGCGGAGAGAGAAGACTTTA 58.982 50.000 0.00 0.00 0.00 1.85
336 337 1.822371 GGAGCGGAGAGAGAAGACTTT 59.178 52.381 0.00 0.00 0.00 2.66
337 338 1.470051 GGAGCGGAGAGAGAAGACTT 58.530 55.000 0.00 0.00 0.00 3.01
338 339 0.395173 GGGAGCGGAGAGAGAAGACT 60.395 60.000 0.00 0.00 0.00 3.24
339 340 0.681564 TGGGAGCGGAGAGAGAAGAC 60.682 60.000 0.00 0.00 0.00 3.01
340 341 0.039764 TTGGGAGCGGAGAGAGAAGA 59.960 55.000 0.00 0.00 0.00 2.87
341 342 0.459489 CTTGGGAGCGGAGAGAGAAG 59.541 60.000 0.00 0.00 0.00 2.85
342 343 0.251832 ACTTGGGAGCGGAGAGAGAA 60.252 55.000 0.00 0.00 0.00 2.87
343 344 0.967887 CACTTGGGAGCGGAGAGAGA 60.968 60.000 0.00 0.00 0.00 3.10
344 345 0.967887 TCACTTGGGAGCGGAGAGAG 60.968 60.000 0.00 0.00 0.00 3.20
345 346 1.076727 TCACTTGGGAGCGGAGAGA 59.923 57.895 0.00 0.00 0.00 3.10
346 347 1.216710 GTCACTTGGGAGCGGAGAG 59.783 63.158 0.00 0.00 0.00 3.20
347 348 2.283529 GGTCACTTGGGAGCGGAGA 61.284 63.158 0.00 0.00 0.00 3.71
348 349 2.266055 GGTCACTTGGGAGCGGAG 59.734 66.667 0.00 0.00 0.00 4.63
349 350 3.319198 GGGTCACTTGGGAGCGGA 61.319 66.667 0.00 0.00 36.17 5.54
350 351 4.410400 GGGGTCACTTGGGAGCGG 62.410 72.222 0.00 0.00 36.17 5.52
351 352 4.410400 GGGGGTCACTTGGGAGCG 62.410 72.222 0.00 0.00 36.17 5.03
352 353 4.410400 CGGGGGTCACTTGGGAGC 62.410 72.222 0.00 0.00 34.62 4.70
353 354 3.717294 CCGGGGGTCACTTGGGAG 61.717 72.222 0.00 0.00 0.00 4.30
354 355 4.585216 ACCGGGGGTCACTTGGGA 62.585 66.667 6.32 0.00 0.00 4.37
355 356 4.344865 CACCGGGGGTCACTTGGG 62.345 72.222 6.32 0.00 31.02 4.12
356 357 4.344865 CCACCGGGGGTCACTTGG 62.345 72.222 17.19 0.81 31.02 3.61
379 380 4.994471 AACGACCCCGGGCGAAAC 62.994 66.667 24.90 8.69 40.78 2.78
380 381 4.992511 CAACGACCCCGGGCGAAA 62.993 66.667 24.90 0.00 40.78 3.46
386 387 3.622060 ATTCAGCCAACGACCCCGG 62.622 63.158 0.00 0.00 40.78 5.73
387 388 1.241315 AAATTCAGCCAACGACCCCG 61.241 55.000 0.00 0.00 42.50 5.73
388 389 0.966179 AAAATTCAGCCAACGACCCC 59.034 50.000 0.00 0.00 0.00 4.95
389 390 2.403259 CAAAAATTCAGCCAACGACCC 58.597 47.619 0.00 0.00 0.00 4.46
390 391 2.403259 CCAAAAATTCAGCCAACGACC 58.597 47.619 0.00 0.00 0.00 4.79
391 392 1.792367 GCCAAAAATTCAGCCAACGAC 59.208 47.619 0.00 0.00 0.00 4.34
392 393 1.686052 AGCCAAAAATTCAGCCAACGA 59.314 42.857 0.00 0.00 0.00 3.85
393 394 2.153366 AGCCAAAAATTCAGCCAACG 57.847 45.000 0.00 0.00 0.00 4.10
394 395 5.122239 GGATTAAGCCAAAAATTCAGCCAAC 59.878 40.000 4.48 0.00 0.00 3.77
395 396 5.244755 GGATTAAGCCAAAAATTCAGCCAA 58.755 37.500 4.48 0.00 0.00 4.52
396 397 4.620332 CGGATTAAGCCAAAAATTCAGCCA 60.620 41.667 10.94 0.00 0.00 4.75
397 398 3.865164 CGGATTAAGCCAAAAATTCAGCC 59.135 43.478 10.94 0.00 0.00 4.85
398 399 3.865164 CCGGATTAAGCCAAAAATTCAGC 59.135 43.478 10.94 0.00 0.00 4.26
399 400 3.865164 GCCGGATTAAGCCAAAAATTCAG 59.135 43.478 5.05 0.00 0.00 3.02
400 401 3.674682 CGCCGGATTAAGCCAAAAATTCA 60.675 43.478 5.05 0.00 0.00 2.57
401 402 2.857748 CGCCGGATTAAGCCAAAAATTC 59.142 45.455 5.05 0.00 0.00 2.17
402 403 2.494073 TCGCCGGATTAAGCCAAAAATT 59.506 40.909 5.05 0.00 0.00 1.82
403 404 2.096248 TCGCCGGATTAAGCCAAAAAT 58.904 42.857 5.05 0.00 0.00 1.82
404 405 1.535833 TCGCCGGATTAAGCCAAAAA 58.464 45.000 5.05 0.00 0.00 1.94
405 406 1.535833 TTCGCCGGATTAAGCCAAAA 58.464 45.000 5.05 0.00 0.00 2.44
406 407 1.535833 TTTCGCCGGATTAAGCCAAA 58.464 45.000 5.05 0.00 0.00 3.28
407 408 1.535833 TTTTCGCCGGATTAAGCCAA 58.464 45.000 5.05 0.00 0.00 4.52
408 409 1.470890 CTTTTTCGCCGGATTAAGCCA 59.529 47.619 5.05 0.00 0.00 4.75
409 410 1.202256 CCTTTTTCGCCGGATTAAGCC 60.202 52.381 5.05 0.00 0.00 4.35
410 411 1.741145 TCCTTTTTCGCCGGATTAAGC 59.259 47.619 5.05 0.00 0.00 3.09
411 412 3.267483 TCTCCTTTTTCGCCGGATTAAG 58.733 45.455 5.05 0.11 0.00 1.85
412 413 3.337694 TCTCCTTTTTCGCCGGATTAA 57.662 42.857 5.05 0.00 0.00 1.40
413 414 3.267483 CTTCTCCTTTTTCGCCGGATTA 58.733 45.455 5.05 0.00 0.00 1.75
414 415 2.084546 CTTCTCCTTTTTCGCCGGATT 58.915 47.619 5.05 0.00 0.00 3.01
415 416 1.003233 ACTTCTCCTTTTTCGCCGGAT 59.997 47.619 5.05 0.00 0.00 4.18
416 417 0.395312 ACTTCTCCTTTTTCGCCGGA 59.605 50.000 5.05 0.00 0.00 5.14
417 418 1.069227 CAACTTCTCCTTTTTCGCCGG 60.069 52.381 0.00 0.00 0.00 6.13
418 419 1.069227 CCAACTTCTCCTTTTTCGCCG 60.069 52.381 0.00 0.00 0.00 6.46
419 420 1.269723 CCCAACTTCTCCTTTTTCGCC 59.730 52.381 0.00 0.00 0.00 5.54
420 421 1.269723 CCCCAACTTCTCCTTTTTCGC 59.730 52.381 0.00 0.00 0.00 4.70
421 422 2.583143 ACCCCAACTTCTCCTTTTTCG 58.417 47.619 0.00 0.00 0.00 3.46
422 423 3.492656 GCAACCCCAACTTCTCCTTTTTC 60.493 47.826 0.00 0.00 0.00 2.29
423 424 2.434336 GCAACCCCAACTTCTCCTTTTT 59.566 45.455 0.00 0.00 0.00 1.94
424 425 2.039418 GCAACCCCAACTTCTCCTTTT 58.961 47.619 0.00 0.00 0.00 2.27
425 426 1.217942 AGCAACCCCAACTTCTCCTTT 59.782 47.619 0.00 0.00 0.00 3.11
426 427 0.853530 AGCAACCCCAACTTCTCCTT 59.146 50.000 0.00 0.00 0.00 3.36
427 428 1.351350 GTAGCAACCCCAACTTCTCCT 59.649 52.381 0.00 0.00 0.00 3.69
428 429 1.351350 AGTAGCAACCCCAACTTCTCC 59.649 52.381 0.00 0.00 0.00 3.71
429 430 2.427506 CAGTAGCAACCCCAACTTCTC 58.572 52.381 0.00 0.00 0.00 2.87
430 431 1.073923 CCAGTAGCAACCCCAACTTCT 59.926 52.381 0.00 0.00 0.00 2.85
431 432 1.534729 CCAGTAGCAACCCCAACTTC 58.465 55.000 0.00 0.00 0.00 3.01
432 433 0.112412 CCCAGTAGCAACCCCAACTT 59.888 55.000 0.00 0.00 0.00 2.66
433 434 0.770557 TCCCAGTAGCAACCCCAACT 60.771 55.000 0.00 0.00 0.00 3.16
434 435 0.608308 GTCCCAGTAGCAACCCCAAC 60.608 60.000 0.00 0.00 0.00 3.77
435 436 1.765074 GTCCCAGTAGCAACCCCAA 59.235 57.895 0.00 0.00 0.00 4.12
436 437 2.589157 CGTCCCAGTAGCAACCCCA 61.589 63.158 0.00 0.00 0.00 4.96
437 438 1.623542 ATCGTCCCAGTAGCAACCCC 61.624 60.000 0.00 0.00 0.00 4.95
438 439 0.252197 AATCGTCCCAGTAGCAACCC 59.748 55.000 0.00 0.00 0.00 4.11
439 440 2.109425 AAATCGTCCCAGTAGCAACC 57.891 50.000 0.00 0.00 0.00 3.77
440 441 5.388111 GTTAAAAATCGTCCCAGTAGCAAC 58.612 41.667 0.00 0.00 0.00 4.17
441 442 4.456566 GGTTAAAAATCGTCCCAGTAGCAA 59.543 41.667 0.00 0.00 0.00 3.91
442 443 4.004982 GGTTAAAAATCGTCCCAGTAGCA 58.995 43.478 0.00 0.00 0.00 3.49
443 444 3.063045 CGGTTAAAAATCGTCCCAGTAGC 59.937 47.826 0.00 0.00 0.00 3.58
444 445 3.063045 GCGGTTAAAAATCGTCCCAGTAG 59.937 47.826 0.00 0.00 0.00 2.57
445 446 3.002102 GCGGTTAAAAATCGTCCCAGTA 58.998 45.455 0.00 0.00 0.00 2.74
446 447 1.808343 GCGGTTAAAAATCGTCCCAGT 59.192 47.619 0.00 0.00 0.00 4.00
447 448 1.131693 GGCGGTTAAAAATCGTCCCAG 59.868 52.381 0.00 0.00 0.00 4.45
448 449 1.166989 GGCGGTTAAAAATCGTCCCA 58.833 50.000 0.00 0.00 0.00 4.37
449 450 0.097499 CGGCGGTTAAAAATCGTCCC 59.903 55.000 0.00 0.00 0.00 4.46
450 451 1.077915 TCGGCGGTTAAAAATCGTCC 58.922 50.000 7.21 0.00 0.00 4.79
451 452 1.460359 TGTCGGCGGTTAAAAATCGTC 59.540 47.619 7.21 0.00 0.00 4.20
452 453 1.195222 GTGTCGGCGGTTAAAAATCGT 59.805 47.619 7.21 0.00 0.00 3.73
453 454 1.461897 AGTGTCGGCGGTTAAAAATCG 59.538 47.619 7.21 0.00 0.00 3.34
454 455 4.666928 TTAGTGTCGGCGGTTAAAAATC 57.333 40.909 7.21 0.00 0.00 2.17
455 456 5.435820 TTTTAGTGTCGGCGGTTAAAAAT 57.564 34.783 7.21 0.00 0.00 1.82
456 457 4.889832 TTTTAGTGTCGGCGGTTAAAAA 57.110 36.364 7.21 5.59 0.00 1.94
457 458 4.889832 TTTTTAGTGTCGGCGGTTAAAA 57.110 36.364 7.21 10.24 0.00 1.52
475 476 2.769663 GACACCCCCAAAAGGTCTTTTT 59.230 45.455 6.01 0.00 40.45 1.94
476 477 2.023404 AGACACCCCCAAAAGGTCTTTT 60.023 45.455 3.12 3.12 42.91 2.27
477 478 1.573857 AGACACCCCCAAAAGGTCTTT 59.426 47.619 0.00 0.00 35.41 2.52
478 479 1.231963 AGACACCCCCAAAAGGTCTT 58.768 50.000 0.00 0.00 35.41 3.01
479 480 1.133482 CAAGACACCCCCAAAAGGTCT 60.133 52.381 0.00 0.00 40.33 3.85
480 481 1.328279 CAAGACACCCCCAAAAGGTC 58.672 55.000 0.00 0.00 34.56 3.85
481 482 0.105709 CCAAGACACCCCCAAAAGGT 60.106 55.000 0.00 0.00 38.48 3.50
482 483 0.831711 CCCAAGACACCCCCAAAAGG 60.832 60.000 0.00 0.00 0.00 3.11
483 484 0.831711 CCCCAAGACACCCCCAAAAG 60.832 60.000 0.00 0.00 0.00 2.27
484 485 1.234529 CCCCAAGACACCCCCAAAA 59.765 57.895 0.00 0.00 0.00 2.44
485 486 2.784654 CCCCCAAGACACCCCCAAA 61.785 63.158 0.00 0.00 0.00 3.28
486 487 3.189646 CCCCCAAGACACCCCCAA 61.190 66.667 0.00 0.00 0.00 4.12
495 496 4.431524 ATCTCCCGGCCCCCAAGA 62.432 66.667 0.00 0.00 0.00 3.02
496 497 4.195334 CATCTCCCGGCCCCCAAG 62.195 72.222 0.00 0.00 0.00 3.61
500 501 3.768833 TAGACCATCTCCCGGCCCC 62.769 68.421 0.00 0.00 0.00 5.80
501 502 1.128188 ATTAGACCATCTCCCGGCCC 61.128 60.000 0.00 0.00 0.00 5.80
502 503 1.640917 TATTAGACCATCTCCCGGCC 58.359 55.000 0.00 0.00 0.00 6.13
503 504 5.615925 AATATATTAGACCATCTCCCGGC 57.384 43.478 0.00 0.00 0.00 6.13
504 505 8.534954 TCTAAATATATTAGACCATCTCCCGG 57.465 38.462 0.00 0.00 0.00 5.73
505 506 9.191479 ACTCTAAATATATTAGACCATCTCCCG 57.809 37.037 0.00 0.00 0.00 5.14
512 513 8.517878 GCCGTACACTCTAAATATATTAGACCA 58.482 37.037 0.00 0.00 0.00 4.02
513 514 7.972832 GGCCGTACACTCTAAATATATTAGACC 59.027 40.741 0.00 0.00 0.00 3.85
514 515 7.695618 CGGCCGTACACTCTAAATATATTAGAC 59.304 40.741 19.50 0.00 0.00 2.59
515 516 7.627088 GCGGCCGTACACTCTAAATATATTAGA 60.627 40.741 28.70 2.23 0.00 2.10
516 517 6.471519 GCGGCCGTACACTCTAAATATATTAG 59.528 42.308 28.70 0.00 0.00 1.73
517 518 6.324819 GCGGCCGTACACTCTAAATATATTA 58.675 40.000 28.70 0.00 0.00 0.98
518 519 5.166398 GCGGCCGTACACTCTAAATATATT 58.834 41.667 28.70 0.00 0.00 1.28
561 562 0.924090 CGTTGTCAGCTCCTATTCGC 59.076 55.000 0.00 0.00 0.00 4.70
603 606 2.355837 GTTGACTGCCGTGCTCGA 60.356 61.111 10.21 0.00 39.71 4.04
604 607 2.162921 CTTGTTGACTGCCGTGCTCG 62.163 60.000 0.14 0.14 0.00 5.03
605 608 1.571460 CTTGTTGACTGCCGTGCTC 59.429 57.895 0.00 0.00 0.00 4.26
606 609 2.546494 GCTTGTTGACTGCCGTGCT 61.546 57.895 0.00 0.00 0.00 4.40
607 610 2.050985 GCTTGTTGACTGCCGTGC 60.051 61.111 0.00 0.00 0.00 5.34
608 611 0.386352 CATGCTTGTTGACTGCCGTG 60.386 55.000 0.00 0.00 0.00 4.94
682 685 8.034215 TCACTCGCCAATTCATTTCATTTATTT 58.966 29.630 0.00 0.00 0.00 1.40
686 689 5.183713 TCTCACTCGCCAATTCATTTCATTT 59.816 36.000 0.00 0.00 0.00 2.32
687 690 4.701651 TCTCACTCGCCAATTCATTTCATT 59.298 37.500 0.00 0.00 0.00 2.57
688 691 4.264253 TCTCACTCGCCAATTCATTTCAT 58.736 39.130 0.00 0.00 0.00 2.57
689 692 3.673902 TCTCACTCGCCAATTCATTTCA 58.326 40.909 0.00 0.00 0.00 2.69
690 693 4.260948 GGATCTCACTCGCCAATTCATTTC 60.261 45.833 0.00 0.00 0.00 2.17
758 761 5.163723 CCATTCATTGCGTTTCAGTAGATGT 60.164 40.000 0.00 0.00 0.00 3.06
761 764 4.574892 TCCATTCATTGCGTTTCAGTAGA 58.425 39.130 0.00 0.00 0.00 2.59
797 800 8.078959 CGTAGAGACGTACTACTAGTAGAGTA 57.921 42.308 31.93 17.43 44.31 2.59
798 801 6.954944 CGTAGAGACGTACTACTAGTAGAGT 58.045 44.000 31.93 25.78 44.31 3.24
814 1559 1.538512 TGTGGTACAGCACGTAGAGAC 59.461 52.381 7.03 0.00 41.80 3.36
815 1560 1.538512 GTGTGGTACAGCACGTAGAGA 59.461 52.381 7.03 0.00 41.80 3.10
828 2597 2.097036 CAGTCTATCGGTGGTGTGGTA 58.903 52.381 0.00 0.00 0.00 3.25
905 2678 4.242811 AGAGGGTAGGATTTATGCATGGA 58.757 43.478 10.16 0.00 0.00 3.41
933 2706 2.359230 GGGAGTGGAGTGCTGTGC 60.359 66.667 0.00 0.00 0.00 4.57
938 2711 2.665603 GAGTGGGGAGTGGAGTGC 59.334 66.667 0.00 0.00 0.00 4.40
989 2765 1.610522 CCATTGCCATTGGTAGCTAGC 59.389 52.381 16.08 16.08 0.00 3.42
1012 2792 1.526575 CTTCTTGTTGCACGCCCCAT 61.527 55.000 0.00 0.00 0.00 4.00
1051 2831 1.222115 GACACCAGCAAGACCGACAC 61.222 60.000 0.00 0.00 0.00 3.67
1098 2878 3.056328 GTGGCTCGGCTGGAAACC 61.056 66.667 0.00 0.00 0.00 3.27
1138 2918 2.101209 GTCACAGTTGAACCGGCACG 62.101 60.000 0.00 0.00 43.10 5.34
1147 2927 2.354188 CGTCGCCGTCACAGTTGA 60.354 61.111 0.00 0.00 0.00 3.18
1173 2953 3.760151 TCTTCCCATCAACATGCTTCTTG 59.240 43.478 0.00 0.00 0.00 3.02
1931 3719 0.319040 CCCGTAGATGTCCATCAGCG 60.319 60.000 9.76 11.69 40.22 5.18
2272 4062 2.566833 TTGCTGTCACAAGGTGCTAT 57.433 45.000 0.00 0.00 32.98 2.97
2313 4103 3.797039 TCAAGCCGATAATGACCTCTTG 58.203 45.455 0.00 0.00 0.00 3.02
2384 4174 0.107752 GCAGAAAGCCCTCTCAGGAG 60.108 60.000 0.00 0.00 37.67 3.69
2385 4175 0.837691 TGCAGAAAGCCCTCTCAGGA 60.838 55.000 0.00 0.00 44.83 3.86
2387 4177 1.743958 CATTGCAGAAAGCCCTCTCAG 59.256 52.381 0.00 0.00 44.83 3.35
2389 4179 1.831580 ACATTGCAGAAAGCCCTCTC 58.168 50.000 0.00 0.00 44.83 3.20
2390 4180 2.299326 AACATTGCAGAAAGCCCTCT 57.701 45.000 0.00 0.00 44.83 3.69
2857 4647 3.753070 CTACCGCCGGCTCGTCTTC 62.753 68.421 26.68 0.00 0.00 2.87
2858 4648 3.823330 CTACCGCCGGCTCGTCTT 61.823 66.667 26.68 4.18 0.00 3.01
2859 4649 4.790962 TCTACCGCCGGCTCGTCT 62.791 66.667 26.68 4.09 0.00 4.18
2860 4650 3.135056 ATTCTACCGCCGGCTCGTC 62.135 63.158 26.68 0.00 0.00 4.20
2861 4651 3.135056 GATTCTACCGCCGGCTCGT 62.135 63.158 26.68 22.04 0.00 4.18
2862 4652 2.354773 GATTCTACCGCCGGCTCG 60.355 66.667 26.68 17.01 0.00 5.03
2863 4653 2.354773 CGATTCTACCGCCGGCTC 60.355 66.667 26.68 12.39 0.00 4.70
2864 4654 2.831742 TCGATTCTACCGCCGGCT 60.832 61.111 26.68 9.55 0.00 5.52
2865 4655 2.354773 CTCGATTCTACCGCCGGC 60.355 66.667 19.07 19.07 0.00 6.13
2866 4656 1.008767 GACTCGATTCTACCGCCGG 60.009 63.158 0.00 0.00 0.00 6.13
2867 4657 0.317103 CAGACTCGATTCTACCGCCG 60.317 60.000 4.82 0.00 0.00 6.46
2868 4658 0.030908 CCAGACTCGATTCTACCGCC 59.969 60.000 4.82 0.00 0.00 6.13
2869 4659 0.030908 CCCAGACTCGATTCTACCGC 59.969 60.000 4.82 0.00 0.00 5.68
2870 4660 0.669077 CCCCAGACTCGATTCTACCG 59.331 60.000 4.82 0.00 0.00 4.02
2871 4661 1.041437 CCCCCAGACTCGATTCTACC 58.959 60.000 4.82 0.00 0.00 3.18
2872 4662 0.389757 GCCCCCAGACTCGATTCTAC 59.610 60.000 4.82 0.00 0.00 2.59
2873 4663 1.107538 CGCCCCCAGACTCGATTCTA 61.108 60.000 4.82 0.00 0.00 2.10
2874 4664 2.427245 CGCCCCCAGACTCGATTCT 61.427 63.158 0.00 0.00 0.00 2.40
2875 4665 2.107141 CGCCCCCAGACTCGATTC 59.893 66.667 0.00 0.00 0.00 2.52
2876 4666 3.470888 CCGCCCCCAGACTCGATT 61.471 66.667 0.00 0.00 0.00 3.34
2877 4667 2.866523 TAACCGCCCCCAGACTCGAT 62.867 60.000 0.00 0.00 0.00 3.59
2878 4668 3.588817 TAACCGCCCCCAGACTCGA 62.589 63.158 0.00 0.00 0.00 4.04
2879 4669 3.072468 TAACCGCCCCCAGACTCG 61.072 66.667 0.00 0.00 0.00 4.18
2880 4670 2.732619 CCTAACCGCCCCCAGACTC 61.733 68.421 0.00 0.00 0.00 3.36
2881 4671 2.687566 CCTAACCGCCCCCAGACT 60.688 66.667 0.00 0.00 0.00 3.24
2882 4672 4.484872 GCCTAACCGCCCCCAGAC 62.485 72.222 0.00 0.00 0.00 3.51
2884 4674 3.774599 GATGCCTAACCGCCCCCAG 62.775 68.421 0.00 0.00 0.00 4.45
2885 4675 3.804329 GATGCCTAACCGCCCCCA 61.804 66.667 0.00 0.00 0.00 4.96
2886 4676 4.581093 GGATGCCTAACCGCCCCC 62.581 72.222 0.00 0.00 0.00 5.40
2887 4677 3.774599 CTGGATGCCTAACCGCCCC 62.775 68.421 0.00 0.00 0.00 5.80
2888 4678 2.203209 CTGGATGCCTAACCGCCC 60.203 66.667 0.00 0.00 0.00 6.13
2889 4679 2.902343 GCTGGATGCCTAACCGCC 60.902 66.667 0.00 0.00 35.15 6.13
2899 4689 4.530857 GGGGACGACGGCTGGATG 62.531 72.222 0.00 0.00 0.00 3.51
2903 4693 4.436998 GTCTGGGGACGACGGCTG 62.437 72.222 0.00 0.00 32.47 4.85
2911 4701 1.289380 GATATCGGCGTCTGGGGAC 59.711 63.158 6.85 0.00 38.97 4.46
2912 4702 2.265904 CGATATCGGCGTCTGGGGA 61.266 63.158 17.51 0.00 35.37 4.81
2913 4703 2.258591 CGATATCGGCGTCTGGGG 59.741 66.667 17.51 0.00 35.37 4.96
2923 4713 0.391661 CCAGGAATGGGCCGATATCG 60.392 60.000 18.31 18.31 39.44 2.92
2924 4714 0.678048 GCCAGGAATGGGCCGATATC 60.678 60.000 0.00 1.21 45.87 1.63
2925 4715 1.380302 GCCAGGAATGGGCCGATAT 59.620 57.895 0.00 0.00 45.87 1.63
2926 4716 2.836154 GCCAGGAATGGGCCGATA 59.164 61.111 0.00 0.00 45.87 2.92
2932 4722 3.963124 AAAGGCGGCCAGGAATGGG 62.963 63.158 23.09 0.00 0.00 4.00
2933 4723 2.362889 AAAGGCGGCCAGGAATGG 60.363 61.111 23.09 0.00 0.00 3.16
2934 4724 2.764314 CGAAAGGCGGCCAGGAATG 61.764 63.158 23.09 1.55 36.03 2.67
2935 4725 2.438434 CGAAAGGCGGCCAGGAAT 60.438 61.111 23.09 1.47 36.03 3.01
2947 4737 0.735978 GGGCCATTTTTCGCCGAAAG 60.736 55.000 12.50 2.39 46.73 2.62
2948 4738 1.290639 GGGCCATTTTTCGCCGAAA 59.709 52.632 8.43 8.43 46.73 3.46
2949 4739 2.966590 GGGCCATTTTTCGCCGAA 59.033 55.556 4.39 0.00 46.73 4.30
2950 4740 3.436055 CGGGCCATTTTTCGCCGA 61.436 61.111 4.39 0.00 46.73 5.54
2951 4741 1.440938 TATCGGGCCATTTTTCGCCG 61.441 55.000 4.39 0.00 46.73 6.46
2952 4742 0.958822 ATATCGGGCCATTTTTCGCC 59.041 50.000 4.39 0.00 44.92 5.54
2953 4743 1.399727 CGATATCGGGCCATTTTTCGC 60.400 52.381 17.51 0.00 35.37 4.70
2954 4744 2.594529 CGATATCGGGCCATTTTTCG 57.405 50.000 17.51 3.43 35.37 3.46
2966 4756 2.497092 CCGATTCGCGCCGATATCG 61.497 63.158 18.31 18.31 41.45 2.92
2967 4757 2.158959 CCCGATTCGCGCCGATATC 61.159 63.158 14.90 7.79 39.11 1.63
2968 4758 2.126071 CCCGATTCGCGCCGATAT 60.126 61.111 14.90 0.00 39.11 1.63
2974 4764 2.240612 GAATATGGCCCGATTCGCGC 62.241 60.000 7.16 7.16 39.11 6.86
2975 4765 1.787847 GAATATGGCCCGATTCGCG 59.212 57.895 0.00 0.00 40.47 5.87
2976 4766 1.787847 CGAATATGGCCCGATTCGC 59.212 57.895 26.69 5.96 45.41 4.70
2986 4776 1.931551 CGAACCACGCCGAATATGG 59.068 57.895 0.00 0.00 39.57 2.74
2996 4786 2.325666 AAAAACCACGGCGAACCACG 62.326 55.000 16.62 0.00 45.66 4.94
2997 4787 0.662085 TAAAAACCACGGCGAACCAC 59.338 50.000 16.62 0.00 34.57 4.16
2998 4788 1.267261 CATAAAAACCACGGCGAACCA 59.733 47.619 16.62 0.00 34.57 3.67
2999 4789 1.267533 ACATAAAAACCACGGCGAACC 59.732 47.619 16.62 0.00 0.00 3.62
3000 4790 2.031857 TGACATAAAAACCACGGCGAAC 60.032 45.455 16.62 0.00 0.00 3.95
3001 4791 2.031857 GTGACATAAAAACCACGGCGAA 60.032 45.455 16.62 0.00 0.00 4.70
3002 4792 1.532007 GTGACATAAAAACCACGGCGA 59.468 47.619 16.62 0.00 0.00 5.54
3003 4793 1.264557 TGTGACATAAAAACCACGGCG 59.735 47.619 4.80 4.80 32.58 6.46
3004 4794 3.569250 ATGTGACATAAAAACCACGGC 57.431 42.857 0.00 0.00 32.58 5.68
3005 4795 9.445786 GATAAATATGTGACATAAAAACCACGG 57.554 33.333 9.61 0.00 32.58 4.94
3006 4796 9.995957 TGATAAATATGTGACATAAAAACCACG 57.004 29.630 9.61 0.00 32.58 4.94
3099 4889 9.605955 CAACGTGTGATGAAATATGAGTTTTTA 57.394 29.630 0.00 0.00 0.00 1.52
3100 4890 8.134895 ACAACGTGTGATGAAATATGAGTTTTT 58.865 29.630 0.00 0.00 0.00 1.94
3101 4891 7.648142 ACAACGTGTGATGAAATATGAGTTTT 58.352 30.769 0.00 0.00 0.00 2.43
3102 4892 7.041440 TGACAACGTGTGATGAAATATGAGTTT 60.041 33.333 0.00 0.00 0.00 2.66
3103 4893 6.426633 TGACAACGTGTGATGAAATATGAGTT 59.573 34.615 0.00 0.00 0.00 3.01
3104 4894 5.931724 TGACAACGTGTGATGAAATATGAGT 59.068 36.000 0.00 0.00 0.00 3.41
3105 4895 6.243551 GTGACAACGTGTGATGAAATATGAG 58.756 40.000 0.00 0.00 0.00 2.90
3106 4896 5.164002 CGTGACAACGTGTGATGAAATATGA 60.164 40.000 0.00 0.00 44.93 2.15
3107 4897 5.015108 CGTGACAACGTGTGATGAAATATG 58.985 41.667 0.00 0.00 44.93 1.78
3108 4898 5.203358 CGTGACAACGTGTGATGAAATAT 57.797 39.130 0.00 0.00 44.93 1.28
3109 4899 4.639189 CGTGACAACGTGTGATGAAATA 57.361 40.909 0.00 0.00 44.93 1.40
3110 4900 3.519908 CGTGACAACGTGTGATGAAAT 57.480 42.857 0.00 0.00 44.93 2.17
3122 4912 1.397692 TGAAAAACCGGTCGTGACAAC 59.602 47.619 8.04 0.00 0.00 3.32
3123 4913 1.735386 TGAAAAACCGGTCGTGACAA 58.265 45.000 8.04 0.00 0.00 3.18
3124 4914 1.735386 TTGAAAAACCGGTCGTGACA 58.265 45.000 8.04 2.16 0.00 3.58
3125 4915 4.471157 TTATTGAAAAACCGGTCGTGAC 57.529 40.909 8.04 0.00 0.00 3.67
3126 4916 5.496133 TTTTATTGAAAAACCGGTCGTGA 57.504 34.783 8.04 0.00 31.51 4.35
3127 4917 7.854934 TTATTTTATTGAAAAACCGGTCGTG 57.145 32.000 8.04 0.00 38.04 4.35
3145 4935 9.942526 AGGGATTGGTCTCTCAATAATTATTTT 57.057 29.630 8.01 0.00 37.47 1.82
3146 4936 9.942526 AAGGGATTGGTCTCTCAATAATTATTT 57.057 29.630 8.01 0.00 37.47 1.40
3147 4937 9.942526 AAAGGGATTGGTCTCTCAATAATTATT 57.057 29.630 4.81 4.81 37.47 1.40
3148 4938 9.942526 AAAAGGGATTGGTCTCTCAATAATTAT 57.057 29.630 0.00 0.00 37.47 1.28
3150 4940 9.190317 GTAAAAGGGATTGGTCTCTCAATAATT 57.810 33.333 0.00 0.00 37.47 1.40
3151 4941 7.499232 CGTAAAAGGGATTGGTCTCTCAATAAT 59.501 37.037 0.00 0.00 37.47 1.28
3152 4942 6.821665 CGTAAAAGGGATTGGTCTCTCAATAA 59.178 38.462 0.00 0.00 37.47 1.40
3153 4943 6.346096 CGTAAAAGGGATTGGTCTCTCAATA 58.654 40.000 0.00 0.00 37.47 1.90
3154 4944 5.186198 CGTAAAAGGGATTGGTCTCTCAAT 58.814 41.667 0.00 0.00 39.76 2.57
3155 4945 4.564821 CCGTAAAAGGGATTGGTCTCTCAA 60.565 45.833 0.00 0.00 32.69 3.02
3156 4946 3.055385 CCGTAAAAGGGATTGGTCTCTCA 60.055 47.826 0.00 0.00 32.69 3.27
3157 4947 3.197116 TCCGTAAAAGGGATTGGTCTCTC 59.803 47.826 0.00 0.00 32.69 3.20
3158 4948 3.055312 GTCCGTAAAAGGGATTGGTCTCT 60.055 47.826 0.00 0.00 36.49 3.10
3159 4949 3.268330 GTCCGTAAAAGGGATTGGTCTC 58.732 50.000 0.00 0.00 34.33 3.36
3160 4950 2.026542 GGTCCGTAAAAGGGATTGGTCT 60.027 50.000 0.00 0.00 34.33 3.85
3161 4951 2.290450 TGGTCCGTAAAAGGGATTGGTC 60.290 50.000 0.00 0.00 34.33 4.02
3162 4952 1.706305 TGGTCCGTAAAAGGGATTGGT 59.294 47.619 0.00 0.00 34.33 3.67
3163 4953 2.365582 CTGGTCCGTAAAAGGGATTGG 58.634 52.381 0.00 0.00 34.33 3.16
3164 4954 1.743394 GCTGGTCCGTAAAAGGGATTG 59.257 52.381 0.00 0.00 34.33 2.67
3165 4955 2.124277 GCTGGTCCGTAAAAGGGATT 57.876 50.000 0.00 0.00 34.33 3.01
3166 4956 3.875865 GCTGGTCCGTAAAAGGGAT 57.124 52.632 0.00 0.00 34.33 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.