Multiple sequence alignment - TraesCS1D01G321700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G321700 chr1D 100.000 3666 0 0 1 3666 415147432 415143767 0.000000e+00 6770.0
1 TraesCS1D01G321700 chr1D 93.629 722 30 7 1 719 176890460 176889752 0.000000e+00 1064.0
2 TraesCS1D01G321700 chr1D 86.910 657 54 14 1796 2424 414941323 414940671 0.000000e+00 708.0
3 TraesCS1D01G321700 chr1D 86.239 654 58 13 1799 2424 415053361 415052712 0.000000e+00 680.0
4 TraesCS1D01G321700 chr1D 88.190 525 39 9 1893 2409 416986038 416986547 4.050000e-169 604.0
5 TraesCS1D01G321700 chr1D 91.935 248 11 2 1090 1328 414941773 414941526 4.530000e-89 339.0
6 TraesCS1D01G321700 chr1D 91.532 248 12 4 1090 1328 415053814 415053567 2.110000e-87 333.0
7 TraesCS1D01G321700 chr1D 76.034 822 86 71 748 1494 416931276 416932061 1.270000e-84 324.0
8 TraesCS1D01G321700 chr1D 93.820 178 11 0 1251 1428 415053572 415053395 6.030000e-68 268.0
9 TraesCS1D01G321700 chr1D 91.200 125 8 2 2538 2660 414940429 414940306 2.260000e-37 167.0
10 TraesCS1D01G321700 chr1D 85.714 119 17 0 1251 1369 415058661 415058543 3.840000e-25 126.0
11 TraesCS1D01G321700 chr1A 87.610 2607 160 74 748 3281 512462342 512459826 0.000000e+00 2874.0
12 TraesCS1D01G321700 chr1A 93.636 660 29 4 1 659 555093706 555093059 0.000000e+00 974.0
13 TraesCS1D01G321700 chr1A 94.523 493 16 2 3 495 251152078 251152559 0.000000e+00 750.0
14 TraesCS1D01G321700 chr1A 86.078 668 53 16 1799 2430 511635726 511635063 0.000000e+00 682.0
15 TraesCS1D01G321700 chr1A 85.388 657 66 12 1799 2430 512039765 512039114 0.000000e+00 654.0
16 TraesCS1D01G321700 chr1A 87.810 525 43 9 1893 2409 514257466 514257977 2.440000e-166 595.0
17 TraesCS1D01G321700 chr1A 81.725 487 58 21 1034 1493 514256986 514257468 9.610000e-101 377.0
18 TraesCS1D01G321700 chr1A 92.742 248 9 4 1090 1328 511636149 511635902 2.090000e-92 350.0
19 TraesCS1D01G321700 chr1A 88.830 188 20 1 1241 1428 511789925 511789739 2.850000e-56 230.0
20 TraesCS1D01G321700 chr1A 95.455 132 6 0 1090 1221 511790512 511790381 1.030000e-50 211.0
21 TraesCS1D01G321700 chr1A 97.849 93 2 0 1802 1894 512018034 512017942 1.050000e-35 161.0
22 TraesCS1D01G321700 chr1A 92.727 110 8 0 1251 1360 511635907 511635798 3.790000e-35 159.0
23 TraesCS1D01G321700 chr1A 84.314 153 17 5 3437 3583 512459830 512459679 3.820000e-30 143.0
24 TraesCS1D01G321700 chr1A 90.476 105 10 0 805 909 514256735 514256839 4.940000e-29 139.0
25 TraesCS1D01G321700 chr1A 93.443 61 3 1 2600 2660 512011647 512011588 5.040000e-14 89.8
26 TraesCS1D01G321700 chr1B 87.654 1790 109 49 716 2429 561257604 561255851 0.000000e+00 1978.0
27 TraesCS1D01G321700 chr1B 87.942 1584 81 32 936 2421 561158018 561156447 0.000000e+00 1766.0
28 TraesCS1D01G321700 chr1B 85.714 665 57 12 1799 2429 560788759 560788099 0.000000e+00 667.0
29 TraesCS1D01G321700 chr1B 85.274 584 61 12 2711 3281 561156073 561155502 2.450000e-161 579.0
30 TraesCS1D01G321700 chr1B 87.525 497 45 7 1921 2409 563787772 563788259 3.200000e-155 558.0
31 TraesCS1D01G321700 chr1B 90.323 248 15 1 1090 1328 560789179 560788932 2.120000e-82 316.0
32 TraesCS1D01G321700 chr1B 90.948 232 14 4 3437 3666 561155506 561155280 4.600000e-79 305.0
33 TraesCS1D01G321700 chr1B 89.894 188 9 2 716 902 561158196 561158018 2.200000e-57 233.0
34 TraesCS1D01G321700 chr1B 86.207 145 11 5 765 909 563787036 563787171 8.200000e-32 148.0
35 TraesCS1D01G321700 chr1B 86.301 146 9 7 765 909 563847061 563847196 8.200000e-32 148.0
36 TraesCS1D01G321700 chr1B 87.395 119 14 1 2538 2656 560786318 560786201 6.390000e-28 135.0
37 TraesCS1D01G321700 chr7D 96.523 719 24 1 1 719 568358161 568358878 0.000000e+00 1188.0
38 TraesCS1D01G321700 chr7D 91.667 168 11 3 3273 3439 397555080 397554915 2.850000e-56 230.0
39 TraesCS1D01G321700 chr7D 81.590 239 36 4 2793 3029 324277662 324277430 1.340000e-44 191.0
40 TraesCS1D01G321700 chr7A 93.699 730 33 4 1 729 239435381 239436098 0.000000e+00 1081.0
41 TraesCS1D01G321700 chr7A 91.425 723 28 10 1 722 86139105 86138416 0.000000e+00 961.0
42 TraesCS1D01G321700 chr7A 95.054 465 22 1 1 465 641119380 641119843 0.000000e+00 730.0
43 TraesCS1D01G321700 chr7A 92.353 170 11 2 3275 3443 494786827 494786995 1.320000e-59 241.0
44 TraesCS1D01G321700 chr7A 91.071 168 12 3 3273 3439 451519808 451519973 1.320000e-54 224.0
45 TraesCS1D01G321700 chr7A 93.421 76 5 0 1566 1641 61444616 61444691 2.990000e-21 113.0
46 TraesCS1D01G321700 chr2D 94.044 722 28 6 1 719 60193542 60192833 0.000000e+00 1081.0
47 TraesCS1D01G321700 chr2D 93.113 726 35 6 1 724 579089428 579090140 0.000000e+00 1050.0
48 TraesCS1D01G321700 chrUn 93.333 735 32 10 1 731 12536836 12536115 0.000000e+00 1070.0
49 TraesCS1D01G321700 chrUn 86.957 506 45 10 1916 2409 305658862 305659358 1.920000e-152 549.0
50 TraesCS1D01G321700 chrUn 88.000 450 33 10 1972 2409 342934775 342935215 2.520000e-141 512.0
51 TraesCS1D01G321700 chrUn 89.947 189 12 1 1567 1755 22729170 22728989 1.700000e-58 237.0
52 TraesCS1D01G321700 chrUn 86.897 145 10 4 765 909 305658134 305658269 1.760000e-33 154.0
53 TraesCS1D01G321700 chrUn 86.897 145 10 4 765 909 394106844 394106709 1.760000e-33 154.0
54 TraesCS1D01G321700 chr6D 93.655 725 31 6 1 722 97560938 97560226 0.000000e+00 1070.0
55 TraesCS1D01G321700 chr6D 92.025 163 11 2 3277 3438 48457973 48458134 1.020000e-55 228.0
56 TraesCS1D01G321700 chr5A 93.750 720 32 4 1 719 28622219 28621512 0.000000e+00 1068.0
57 TraesCS1D01G321700 chr5A 90.659 182 13 4 3261 3439 320214423 320214243 4.730000e-59 239.0
58 TraesCS1D01G321700 chr6A 95.361 582 26 1 111 692 135613476 135614056 0.000000e+00 924.0
59 TraesCS1D01G321700 chr6A 94.792 480 20 4 1 478 421365317 421364841 0.000000e+00 743.0
60 TraesCS1D01G321700 chr6A 90.291 103 7 2 2540 2642 420588133 420588034 8.260000e-27 132.0
61 TraesCS1D01G321700 chr6B 86.458 288 14 10 1040 1306 151601937 151602220 3.580000e-75 292.0
62 TraesCS1D01G321700 chr6B 89.773 176 14 4 3267 3440 226361508 226361681 4.760000e-54 222.0
63 TraesCS1D01G321700 chr3B 92.025 163 11 2 3277 3438 501986615 501986776 1.020000e-55 228.0
64 TraesCS1D01G321700 chr3B 87.374 198 13 3 1566 1763 57235310 57235125 2.220000e-52 217.0
65 TraesCS1D01G321700 chr3B 86.869 198 13 4 1566 1763 57261802 57261618 3.710000e-50 209.0
66 TraesCS1D01G321700 chr3B 95.000 60 3 0 1441 1500 57235402 57235343 1.080000e-15 95.3
67 TraesCS1D01G321700 chr3B 95.000 60 3 0 1441 1500 57261894 57261835 1.080000e-15 95.3
68 TraesCS1D01G321700 chr3D 91.071 168 13 2 3273 3439 87926165 87925999 3.680000e-55 226.0
69 TraesCS1D01G321700 chr4B 91.071 168 11 4 3273 3439 532435165 532435001 1.320000e-54 224.0
70 TraesCS1D01G321700 chr2B 81.041 269 42 5 2736 3001 671391950 671392212 4.800000e-49 206.0
71 TraesCS1D01G321700 chr3A 78.696 230 15 13 2431 2642 695949762 695949549 4.970000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G321700 chr1D 415143767 415147432 3665 True 6770.000000 6770 100.000000 1 3666 1 chr1D.!!$R3 3665
1 TraesCS1D01G321700 chr1D 176889752 176890460 708 True 1064.000000 1064 93.629000 1 719 1 chr1D.!!$R1 718
2 TraesCS1D01G321700 chr1D 416986038 416986547 509 False 604.000000 604 88.190000 1893 2409 1 chr1D.!!$F2 516
3 TraesCS1D01G321700 chr1D 415052712 415053814 1102 True 427.000000 680 90.530333 1090 2424 3 chr1D.!!$R5 1334
4 TraesCS1D01G321700 chr1D 414940306 414941773 1467 True 404.666667 708 90.015000 1090 2660 3 chr1D.!!$R4 1570
5 TraesCS1D01G321700 chr1D 416931276 416932061 785 False 324.000000 324 76.034000 748 1494 1 chr1D.!!$F1 746
6 TraesCS1D01G321700 chr1A 512459679 512462342 2663 True 1508.500000 2874 85.962000 748 3583 2 chr1A.!!$R7 2835
7 TraesCS1D01G321700 chr1A 555093059 555093706 647 True 974.000000 974 93.636000 1 659 1 chr1A.!!$R4 658
8 TraesCS1D01G321700 chr1A 512039114 512039765 651 True 654.000000 654 85.388000 1799 2430 1 chr1A.!!$R3 631
9 TraesCS1D01G321700 chr1A 511635063 511636149 1086 True 397.000000 682 90.515667 1090 2430 3 chr1A.!!$R5 1340
10 TraesCS1D01G321700 chr1A 514256735 514257977 1242 False 370.333333 595 86.670333 805 2409 3 chr1A.!!$F2 1604
11 TraesCS1D01G321700 chr1A 511789739 511790512 773 True 220.500000 230 92.142500 1090 1428 2 chr1A.!!$R6 338
12 TraesCS1D01G321700 chr1B 561255851 561257604 1753 True 1978.000000 1978 87.654000 716 2429 1 chr1B.!!$R1 1713
13 TraesCS1D01G321700 chr1B 561155280 561158196 2916 True 720.750000 1766 88.514500 716 3666 4 chr1B.!!$R3 2950
14 TraesCS1D01G321700 chr1B 560786201 560789179 2978 True 372.666667 667 87.810667 1090 2656 3 chr1B.!!$R2 1566
15 TraesCS1D01G321700 chr1B 563787036 563788259 1223 False 353.000000 558 86.866000 765 2409 2 chr1B.!!$F2 1644
16 TraesCS1D01G321700 chr7D 568358161 568358878 717 False 1188.000000 1188 96.523000 1 719 1 chr7D.!!$F1 718
17 TraesCS1D01G321700 chr7A 239435381 239436098 717 False 1081.000000 1081 93.699000 1 729 1 chr7A.!!$F2 728
18 TraesCS1D01G321700 chr7A 86138416 86139105 689 True 961.000000 961 91.425000 1 722 1 chr7A.!!$R1 721
19 TraesCS1D01G321700 chr2D 60192833 60193542 709 True 1081.000000 1081 94.044000 1 719 1 chr2D.!!$R1 718
20 TraesCS1D01G321700 chr2D 579089428 579090140 712 False 1050.000000 1050 93.113000 1 724 1 chr2D.!!$F1 723
21 TraesCS1D01G321700 chrUn 12536115 12536836 721 True 1070.000000 1070 93.333000 1 731 1 chrUn.!!$R1 730
22 TraesCS1D01G321700 chrUn 305658134 305659358 1224 False 351.500000 549 86.927000 765 2409 2 chrUn.!!$F2 1644
23 TraesCS1D01G321700 chr6D 97560226 97560938 712 True 1070.000000 1070 93.655000 1 722 1 chr6D.!!$R1 721
24 TraesCS1D01G321700 chr5A 28621512 28622219 707 True 1068.000000 1068 93.750000 1 719 1 chr5A.!!$R1 718
25 TraesCS1D01G321700 chr6A 135613476 135614056 580 False 924.000000 924 95.361000 111 692 1 chr6A.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 933 0.030235 TGTCTGTCCGTCTGTCGTTG 59.970 55.0 0.00 0.00 37.94 4.10 F
2280 2947 0.178964 CCCTGAGGCTCTAGCTAGCT 60.179 60.0 23.12 23.12 42.37 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2282 2949 0.249489 CTGATCGGATGTCGGAACCC 60.249 60.0 0.00 0.0 39.77 4.11 R
3589 6079 1.366111 ATGATACGCGTGGTTGGCAC 61.366 55.0 24.59 4.6 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 162 6.601741 TTGAAATCAAAGGTTGCAACATTC 57.398 33.333 27.63 15.72 30.85 2.67
255 258 1.421268 TGCATCTTGGAAGACCACACT 59.579 47.619 0.00 0.00 46.80 3.55
305 308 2.531685 TACCACCAGGGCCTTGCT 60.532 61.111 9.90 0.00 42.05 3.91
402 405 0.176910 TAAGACATGATTCGGCCGCA 59.823 50.000 23.51 11.40 0.00 5.69
435 438 2.290260 CCAAGGCCGCTTGATATATGGA 60.290 50.000 6.30 0.00 36.50 3.41
461 464 0.460284 CCTCCTCAACGTGATTCGGG 60.460 60.000 0.00 0.00 44.69 5.14
625 630 2.553086 GGTTTGTTCGGTACACACTCA 58.447 47.619 4.45 0.00 37.54 3.41
687 692 3.524648 GACTCGACCGGCCCAACAA 62.525 63.158 0.00 0.00 0.00 2.83
809 814 2.204461 TGTTCCGAAGAGCCGACCA 61.204 57.895 0.00 0.00 0.00 4.02
848 858 1.482593 CAGGAGTTGCTTCCCGTATCT 59.517 52.381 0.00 0.00 38.02 1.98
850 860 1.207329 GGAGTTGCTTCCCGTATCTGT 59.793 52.381 0.00 0.00 0.00 3.41
919 930 1.210413 CCTGTCTGTCCGTCTGTCG 59.790 63.158 0.00 0.00 39.52 4.35
920 931 1.516365 CCTGTCTGTCCGTCTGTCGT 61.516 60.000 0.00 0.00 37.94 4.34
921 932 0.311165 CTGTCTGTCCGTCTGTCGTT 59.689 55.000 0.00 0.00 37.94 3.85
922 933 0.030235 TGTCTGTCCGTCTGTCGTTG 59.970 55.000 0.00 0.00 37.94 4.10
923 934 0.309922 GTCTGTCCGTCTGTCGTTGA 59.690 55.000 0.00 0.00 37.94 3.18
926 937 0.820482 TGTCCGTCTGTCGTTGAGGA 60.820 55.000 0.00 0.00 37.94 3.71
928 939 1.444553 CCGTCTGTCGTTGAGGAGC 60.445 63.158 0.00 0.00 37.94 4.70
930 941 1.579932 GTCTGTCGTTGAGGAGCGA 59.420 57.895 0.00 0.00 34.54 4.93
1013 1062 1.552226 CCGTCGCTATAAAACGAGCA 58.448 50.000 0.00 0.00 39.30 4.26
1675 2238 2.270205 CGCCAGAGCACCCTTCAT 59.730 61.111 0.00 0.00 39.83 2.57
1763 2348 0.457851 CTCTGCTCCAAGGTACTCCG 59.542 60.000 0.00 0.00 38.49 4.63
1775 2363 2.228822 AGGTACTCCGCTGCAAAAATTG 59.771 45.455 0.00 0.00 39.05 2.32
1958 2563 1.667177 CGCGCCATACTACTCCATCTG 60.667 57.143 0.00 0.00 0.00 2.90
1980 2603 1.323271 ATCTCGACGCCACCATGACT 61.323 55.000 0.00 0.00 0.00 3.41
2012 2635 1.425412 GTACGTGCATTGGTTCGAGT 58.575 50.000 0.00 0.00 0.00 4.18
2031 2662 2.352651 AGTCGTTTCGGCATCATTCATG 59.647 45.455 0.00 0.00 32.13 3.07
2063 2698 3.681897 CAGAACTAACTGATGGCTGTGTC 59.318 47.826 0.00 0.00 39.94 3.67
2080 2727 1.518352 TCGCAACACCCGATCGATG 60.518 57.895 18.66 16.61 0.00 3.84
2279 2946 0.178975 TCCCTGAGGCTCTAGCTAGC 60.179 60.000 16.35 6.62 41.99 3.42
2280 2947 0.178964 CCCTGAGGCTCTAGCTAGCT 60.179 60.000 23.12 23.12 42.37 3.32
2281 2948 1.074727 CCCTGAGGCTCTAGCTAGCTA 59.925 57.143 22.85 22.85 42.37 3.32
2282 2949 2.436417 CCTGAGGCTCTAGCTAGCTAG 58.564 57.143 36.20 36.20 45.38 3.42
2287 2954 1.890489 GGCTCTAGCTAGCTAGGGTTC 59.110 57.143 39.30 30.40 46.15 3.62
2292 2959 0.033405 AGCTAGCTAGGGTTCCGACA 60.033 55.000 17.69 0.00 0.00 4.35
2346 3013 5.821204 ACGAGTTCTTGGATTGTTTTTGAG 58.179 37.500 0.00 0.00 0.00 3.02
2387 3070 3.690460 AGCTAATTACAGTTTGCCAGCT 58.310 40.909 0.00 0.00 33.45 4.24
2484 3294 8.736751 TTTCTTTTGGATTTGTAATTAGCGTC 57.263 30.769 0.00 0.00 0.00 5.19
2626 5031 1.073722 TCCAAAGGGACAGCAGCAG 59.926 57.895 0.00 0.00 38.64 4.24
2627 5032 1.073722 CCAAAGGGACAGCAGCAGA 59.926 57.895 0.00 0.00 35.59 4.26
2693 5155 9.899226 AAAAGAACTTTCATTGCTTCATACTAC 57.101 29.630 0.21 0.00 31.45 2.73
2694 5156 8.854614 AAGAACTTTCATTGCTTCATACTACT 57.145 30.769 0.00 0.00 0.00 2.57
2695 5157 9.944376 AAGAACTTTCATTGCTTCATACTACTA 57.056 29.630 0.00 0.00 0.00 1.82
2742 5204 0.947244 CCTCAGTTGGCGGCAATATC 59.053 55.000 28.07 14.94 0.00 1.63
2989 5464 8.599055 TTATCTGTTATCAATGATCTCTGCAC 57.401 34.615 0.00 0.00 0.00 4.57
3013 5488 5.297776 CCATACCAAGATCCTCAATGTTGAC 59.702 44.000 0.00 0.00 40.26 3.18
3193 5675 6.779049 TCCGCCTCTTTAACATACCTCTATTA 59.221 38.462 0.00 0.00 0.00 0.98
3195 5677 7.760340 CCGCCTCTTTAACATACCTCTATTATC 59.240 40.741 0.00 0.00 0.00 1.75
3196 5678 8.524487 CGCCTCTTTAACATACCTCTATTATCT 58.476 37.037 0.00 0.00 0.00 1.98
3212 5696 9.877178 CTCTATTATCTTTCCATATTTACGCCT 57.123 33.333 0.00 0.00 0.00 5.52
3252 5736 9.875708 TTATTATCACATTATTAAAGGGCCACT 57.124 29.630 6.18 0.00 0.00 4.00
3253 5737 7.581213 TTATCACATTATTAAAGGGCCACTG 57.419 36.000 6.18 0.00 0.00 3.66
3278 5762 7.172361 TGCCATTTTGGAAAATTTGCTTACTAC 59.828 33.333 13.32 0.00 40.96 2.73
3282 5766 8.880878 TTTTGGAAAATTTGCTTACTACTTCC 57.119 30.769 0.00 0.00 33.24 3.46
3283 5767 7.833285 TTGGAAAATTTGCTTACTACTTCCT 57.167 32.000 0.00 0.00 33.69 3.36
3284 5768 7.448748 TGGAAAATTTGCTTACTACTTCCTC 57.551 36.000 0.00 0.00 33.69 3.71
3285 5769 6.433093 TGGAAAATTTGCTTACTACTTCCTCC 59.567 38.462 0.00 0.00 33.69 4.30
3287 5771 4.820894 ATTTGCTTACTACTTCCTCCGT 57.179 40.909 0.00 0.00 0.00 4.69
3288 5772 4.612264 TTTGCTTACTACTTCCTCCGTT 57.388 40.909 0.00 0.00 0.00 4.44
3289 5773 3.863142 TGCTTACTACTTCCTCCGTTC 57.137 47.619 0.00 0.00 0.00 3.95
3290 5774 2.494870 TGCTTACTACTTCCTCCGTTCC 59.505 50.000 0.00 0.00 0.00 3.62
3291 5775 2.759535 GCTTACTACTTCCTCCGTTCCT 59.240 50.000 0.00 0.00 0.00 3.36
3292 5776 3.950395 GCTTACTACTTCCTCCGTTCCTA 59.050 47.826 0.00 0.00 0.00 2.94
3293 5777 4.400567 GCTTACTACTTCCTCCGTTCCTAA 59.599 45.833 0.00 0.00 0.00 2.69
3294 5778 5.105595 GCTTACTACTTCCTCCGTTCCTAAA 60.106 44.000 0.00 0.00 0.00 1.85
3295 5779 6.406737 GCTTACTACTTCCTCCGTTCCTAAAT 60.407 42.308 0.00 0.00 0.00 1.40
3296 5780 7.201857 GCTTACTACTTCCTCCGTTCCTAAATA 60.202 40.741 0.00 0.00 0.00 1.40
3297 5781 8.773033 TTACTACTTCCTCCGTTCCTAAATAT 57.227 34.615 0.00 0.00 0.00 1.28
3298 5782 9.866655 TTACTACTTCCTCCGTTCCTAAATATA 57.133 33.333 0.00 0.00 0.00 0.86
3299 5783 8.773033 ACTACTTCCTCCGTTCCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
3300 5784 9.205513 ACTACTTCCTCCGTTCCTAAATATAAA 57.794 33.333 0.00 0.00 0.00 1.40
3303 5787 8.935741 ACTTCCTCCGTTCCTAAATATAAATCT 58.064 33.333 0.00 0.00 0.00 2.40
3304 5788 9.780186 CTTCCTCCGTTCCTAAATATAAATCTT 57.220 33.333 0.00 0.00 0.00 2.40
3326 5810 9.942526 ATCTTTTTAGGGATTTCATTATGGACT 57.057 29.630 0.00 0.00 0.00 3.85
3333 5817 8.848474 AGGGATTTCATTATGGACTAAATACG 57.152 34.615 0.00 0.00 0.00 3.06
3334 5818 7.883311 AGGGATTTCATTATGGACTAAATACGG 59.117 37.037 0.00 0.00 0.00 4.02
3335 5819 7.881232 GGGATTTCATTATGGACTAAATACGGA 59.119 37.037 0.00 0.00 0.00 4.69
3336 5820 9.449719 GGATTTCATTATGGACTAAATACGGAT 57.550 33.333 0.00 0.00 0.00 4.18
3338 5822 9.793259 ATTTCATTATGGACTAAATACGGATGT 57.207 29.630 0.00 0.00 0.00 3.06
3347 5831 9.743581 TGGACTAAATACGGATGTATATAGACA 57.256 33.333 2.07 2.07 40.42 3.41
3377 5861 6.311055 AGAGAAGAAGTTCACTCATTTTGC 57.689 37.500 22.69 4.68 34.82 3.68
3378 5862 6.060788 AGAGAAGAAGTTCACTCATTTTGCT 58.939 36.000 22.69 0.15 34.82 3.91
3379 5863 6.204495 AGAGAAGAAGTTCACTCATTTTGCTC 59.796 38.462 22.69 8.07 34.82 4.26
3380 5864 5.240403 AGAAGAAGTTCACTCATTTTGCTCC 59.760 40.000 5.50 0.00 34.82 4.70
3381 5865 4.464008 AGAAGTTCACTCATTTTGCTCCA 58.536 39.130 5.50 0.00 0.00 3.86
3382 5866 5.075493 AGAAGTTCACTCATTTTGCTCCAT 58.925 37.500 5.50 0.00 0.00 3.41
3383 5867 6.240894 AGAAGTTCACTCATTTTGCTCCATA 58.759 36.000 5.50 0.00 0.00 2.74
3384 5868 6.888632 AGAAGTTCACTCATTTTGCTCCATAT 59.111 34.615 5.50 0.00 0.00 1.78
3385 5869 6.446781 AGTTCACTCATTTTGCTCCATATG 57.553 37.500 0.00 0.00 0.00 1.78
3386 5870 5.948162 AGTTCACTCATTTTGCTCCATATGT 59.052 36.000 1.24 0.00 0.00 2.29
3387 5871 7.112122 AGTTCACTCATTTTGCTCCATATGTA 58.888 34.615 1.24 0.00 0.00 2.29
3388 5872 7.281774 AGTTCACTCATTTTGCTCCATATGTAG 59.718 37.037 1.24 0.00 0.00 2.74
3389 5873 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
3390 5874 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
3391 5875 6.017605 CACTCATTTTGCTCCATATGTAGTCC 60.018 42.308 1.24 0.00 0.00 3.85
3392 5876 6.000246 TCATTTTGCTCCATATGTAGTCCA 58.000 37.500 1.24 0.00 0.00 4.02
3393 5877 6.604171 TCATTTTGCTCCATATGTAGTCCAT 58.396 36.000 1.24 0.00 37.58 3.41
3394 5878 7.744733 TCATTTTGCTCCATATGTAGTCCATA 58.255 34.615 1.24 0.00 40.27 2.74
3395 5879 8.385491 TCATTTTGCTCCATATGTAGTCCATAT 58.615 33.333 1.24 0.00 45.67 1.78
3396 5880 9.017509 CATTTTGCTCCATATGTAGTCCATATT 57.982 33.333 1.24 0.00 42.87 1.28
3398 5882 9.725019 TTTTGCTCCATATGTAGTCCATATTAG 57.275 33.333 1.24 0.00 42.87 1.73
3399 5883 8.664669 TTGCTCCATATGTAGTCCATATTAGA 57.335 34.615 1.24 0.00 42.87 2.10
3400 5884 8.664669 TGCTCCATATGTAGTCCATATTAGAA 57.335 34.615 1.24 0.00 42.87 2.10
3401 5885 9.271921 TGCTCCATATGTAGTCCATATTAGAAT 57.728 33.333 1.24 0.00 42.87 2.40
3402 5886 9.757227 GCTCCATATGTAGTCCATATTAGAATC 57.243 37.037 1.24 0.00 42.87 2.52
3432 5916 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3433 5917 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3434 5918 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3435 5919 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3436 5920 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3437 5921 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3438 5922 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
3439 5923 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
3440 5924 5.970501 ATTTAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
3441 5925 4.748277 TTAGGAACGGAGGGAGTATTTG 57.252 45.455 0.00 0.00 0.00 2.32
3442 5926 2.547990 AGGAACGGAGGGAGTATTTGT 58.452 47.619 0.00 0.00 0.00 2.83
3443 5927 2.236395 AGGAACGGAGGGAGTATTTGTG 59.764 50.000 0.00 0.00 0.00 3.33
3444 5928 2.235402 GGAACGGAGGGAGTATTTGTGA 59.765 50.000 0.00 0.00 0.00 3.58
3445 5929 3.307199 GGAACGGAGGGAGTATTTGTGAA 60.307 47.826 0.00 0.00 0.00 3.18
3446 5930 4.320870 GAACGGAGGGAGTATTTGTGAAA 58.679 43.478 0.00 0.00 0.00 2.69
3530 6015 3.857923 TTTACGTAGCGGTGTGTTTTC 57.142 42.857 0.00 0.00 0.00 2.29
3587 6077 4.919754 GCTGTCATTTTTGGAGCTAGTTTG 59.080 41.667 0.00 0.00 0.00 2.93
3589 6079 3.914364 GTCATTTTTGGAGCTAGTTTGCG 59.086 43.478 0.00 0.00 38.13 4.85
3599 6089 0.040425 CTAGTTTGCGTGCCAACCAC 60.040 55.000 5.30 0.00 41.15 4.16
3608 6098 1.078778 TGCCAACCACGCGTATCAT 60.079 52.632 13.44 0.00 0.00 2.45
3613 6103 3.426426 GCCAACCACGCGTATCATTTTTA 60.426 43.478 13.44 0.00 0.00 1.52
3617 6107 6.309251 CCAACCACGCGTATCATTTTTATTTT 59.691 34.615 13.44 0.00 0.00 1.82
3618 6108 7.148722 CCAACCACGCGTATCATTTTTATTTTT 60.149 33.333 13.44 0.00 0.00 1.94
3638 6128 6.984740 TTTTTGAGAACATGCGTATCAAAC 57.015 33.333 15.55 0.00 39.12 2.93
3647 6137 4.943705 ACATGCGTATCAAACAAGGAGATT 59.056 37.500 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
255 258 2.231964 CTGCAACGGTACTACAACCCTA 59.768 50.000 0.00 0.00 36.03 3.53
305 308 3.003173 CCGAAGTCCCCTGAGGCA 61.003 66.667 0.00 0.00 34.51 4.75
449 452 4.728102 TCGCGCCCGAATCACGTT 62.728 61.111 0.00 0.00 41.17 3.99
461 464 1.136057 CCTGTTTTAAGTTCCTCGCGC 60.136 52.381 0.00 0.00 0.00 6.86
541 544 2.564947 ACAGCCACAACCAGAAAAACAA 59.435 40.909 0.00 0.00 0.00 2.83
609 614 0.595567 GCGTGAGTGTGTACCGAACA 60.596 55.000 0.00 0.00 35.06 3.18
625 630 0.801067 GAACCGTTAGATCTGCGCGT 60.801 55.000 8.43 7.48 0.00 6.01
670 675 2.406002 AATTGTTGGGCCGGTCGAGT 62.406 55.000 1.90 0.00 0.00 4.18
762 767 1.344942 CCTGTCGTGTAGCAAGTCGC 61.345 60.000 0.00 0.00 42.91 5.19
919 930 2.811317 CGCCACTCGCTCCTCAAC 60.811 66.667 0.00 0.00 34.21 3.18
920 931 2.989253 TCGCCACTCGCTCCTCAA 60.989 61.111 0.00 0.00 38.27 3.02
921 932 3.443925 CTCGCCACTCGCTCCTCA 61.444 66.667 0.00 0.00 38.27 3.86
922 933 3.444805 ACTCGCCACTCGCTCCTC 61.445 66.667 0.00 0.00 38.27 3.71
923 934 3.753434 CACTCGCCACTCGCTCCT 61.753 66.667 0.00 0.00 38.27 3.69
926 937 2.673341 TCTCACTCGCCACTCGCT 60.673 61.111 0.00 0.00 38.27 4.93
928 939 1.154131 CTGTCTCACTCGCCACTCG 60.154 63.158 0.00 0.00 40.15 4.18
930 941 1.857318 CGTCTGTCTCACTCGCCACT 61.857 60.000 0.00 0.00 0.00 4.00
997 1038 1.472026 GGGGTGCTCGTTTTATAGCGA 60.472 52.381 0.00 0.00 41.77 4.93
1013 1062 4.400251 CTGTCTCCTCCCGGGGGT 62.400 72.222 21.97 0.00 36.78 4.95
1074 1152 1.608590 GAGAGGAGAGAGCAGGATTCG 59.391 57.143 0.00 0.00 0.00 3.34
1076 1154 1.575304 AGGAGAGGAGAGAGCAGGATT 59.425 52.381 0.00 0.00 0.00 3.01
1666 2229 2.353858 TGCTTTGGCATGAAGGGTG 58.646 52.632 0.00 0.00 44.28 4.61
1667 2230 4.950200 TGCTTTGGCATGAAGGGT 57.050 50.000 0.00 0.00 44.28 4.34
1763 2348 2.738013 AGCTCTCCAATTTTTGCAGC 57.262 45.000 0.00 0.00 0.00 5.25
2012 2635 2.355197 ACATGAATGATGCCGAAACGA 58.645 42.857 0.00 0.00 35.15 3.85
2031 2662 7.201565 GCCATCAGTTAGTTCTGACAAATCTAC 60.202 40.741 0.00 0.00 45.40 2.59
2063 2698 1.809619 ACATCGATCGGGTGTTGCG 60.810 57.895 16.41 0.00 0.00 4.85
2279 2946 1.269998 GATCGGATGTCGGAACCCTAG 59.730 57.143 0.00 0.00 39.77 3.02
2280 2947 1.325355 GATCGGATGTCGGAACCCTA 58.675 55.000 0.00 0.00 39.77 3.53
2281 2948 0.686441 TGATCGGATGTCGGAACCCT 60.686 55.000 0.00 0.00 39.77 4.34
2282 2949 0.249489 CTGATCGGATGTCGGAACCC 60.249 60.000 0.00 0.00 39.77 4.11
2287 2954 1.135660 CGGATACTGATCGGATGTCGG 60.136 57.143 9.00 4.03 39.77 4.79
2292 2959 1.166129 CGACCGGATACTGATCGGAT 58.834 55.000 9.46 0.00 35.02 4.18
2346 3013 4.156008 AGCTCCCGAAATGACAAACATTAC 59.844 41.667 0.00 0.00 46.90 1.89
2387 3070 4.217550 TCGTTCTCATCCGATACATGCATA 59.782 41.667 0.00 0.00 0.00 3.14
2443 3243 8.581578 TCCAAAAGAAAAGAAATGGGTATACAC 58.418 33.333 5.01 0.62 0.00 2.90
2668 5073 9.289782 AGTAGTATGAAGCAATGAAAGTTCTTT 57.710 29.630 0.00 0.00 0.00 2.52
2690 5152 5.368145 TGTGCAAGCCCAAGATAATAGTAG 58.632 41.667 0.00 0.00 0.00 2.57
2691 5153 5.366482 TGTGCAAGCCCAAGATAATAGTA 57.634 39.130 0.00 0.00 0.00 1.82
2692 5154 4.235079 TGTGCAAGCCCAAGATAATAGT 57.765 40.909 0.00 0.00 0.00 2.12
2693 5155 5.581126 TTTGTGCAAGCCCAAGATAATAG 57.419 39.130 0.00 0.00 0.00 1.73
2694 5156 7.660112 CATATTTGTGCAAGCCCAAGATAATA 58.340 34.615 0.00 0.00 0.00 0.98
2695 5157 6.518493 CATATTTGTGCAAGCCCAAGATAAT 58.482 36.000 0.00 0.00 0.00 1.28
2696 5158 5.681954 GCATATTTGTGCAAGCCCAAGATAA 60.682 40.000 0.00 0.00 44.43 1.75
2697 5159 4.202141 GCATATTTGTGCAAGCCCAAGATA 60.202 41.667 0.00 0.00 44.43 1.98
2698 5160 3.431207 GCATATTTGTGCAAGCCCAAGAT 60.431 43.478 0.00 0.00 44.43 2.40
2699 5161 2.094078 GCATATTTGTGCAAGCCCAAGA 60.094 45.455 0.00 0.00 44.43 3.02
2700 5162 2.273557 GCATATTTGTGCAAGCCCAAG 58.726 47.619 0.00 0.00 44.43 3.61
2770 5235 6.958767 ACATAGGTAGCATTACAAGGAAGTT 58.041 36.000 0.00 0.00 0.00 2.66
2771 5236 6.561519 ACATAGGTAGCATTACAAGGAAGT 57.438 37.500 0.00 0.00 0.00 3.01
2988 5463 5.044919 TCAACATTGAGGATCTTGGTATGGT 60.045 40.000 0.00 0.00 34.92 3.55
2989 5464 5.297776 GTCAACATTGAGGATCTTGGTATGG 59.702 44.000 0.00 0.00 37.98 2.74
3169 5651 3.821421 AGAGGTATGTTAAAGAGGCGG 57.179 47.619 0.00 0.00 0.00 6.13
3193 5675 5.930135 ACTGAGGCGTAAATATGGAAAGAT 58.070 37.500 0.00 0.00 0.00 2.40
3195 5677 5.007724 GGAACTGAGGCGTAAATATGGAAAG 59.992 44.000 0.00 0.00 0.00 2.62
3196 5678 4.879545 GGAACTGAGGCGTAAATATGGAAA 59.120 41.667 0.00 0.00 0.00 3.13
3252 5736 6.060788 AGTAAGCAAATTTTCCAAAATGGCA 58.939 32.000 17.30 0.00 39.74 4.92
3253 5737 6.558771 AGTAAGCAAATTTTCCAAAATGGC 57.441 33.333 11.16 11.16 38.53 4.40
3262 5746 6.148976 ACGGAGGAAGTAGTAAGCAAATTTTC 59.851 38.462 0.00 0.00 0.00 2.29
3278 5762 9.780186 AAGATTTATATTTAGGAACGGAGGAAG 57.220 33.333 0.00 0.00 0.00 3.46
3300 5784 9.942526 AGTCCATAATGAAATCCCTAAAAAGAT 57.057 29.630 0.00 0.00 0.00 2.40
3307 5791 9.938280 CGTATTTAGTCCATAATGAAATCCCTA 57.062 33.333 0.00 0.00 0.00 3.53
3308 5792 7.883311 CCGTATTTAGTCCATAATGAAATCCCT 59.117 37.037 0.00 0.00 0.00 4.20
3309 5793 7.881232 TCCGTATTTAGTCCATAATGAAATCCC 59.119 37.037 0.00 0.00 0.00 3.85
3310 5794 8.842358 TCCGTATTTAGTCCATAATGAAATCC 57.158 34.615 0.00 0.00 0.00 3.01
3312 5796 9.793259 ACATCCGTATTTAGTCCATAATGAAAT 57.207 29.630 0.00 0.00 0.00 2.17
3321 5805 9.743581 TGTCTATATACATCCGTATTTAGTCCA 57.256 33.333 8.80 5.98 39.13 4.02
3351 5835 8.345565 GCAAAATGAGTGAACTTCTTCTCTAAA 58.654 33.333 12.37 0.00 31.68 1.85
3352 5836 7.716998 AGCAAAATGAGTGAACTTCTTCTCTAA 59.283 33.333 12.37 0.00 31.68 2.10
3353 5837 7.220030 AGCAAAATGAGTGAACTTCTTCTCTA 58.780 34.615 12.37 4.25 31.68 2.43
3354 5838 6.060788 AGCAAAATGAGTGAACTTCTTCTCT 58.939 36.000 12.37 0.00 33.75 3.10
3355 5839 6.311055 AGCAAAATGAGTGAACTTCTTCTC 57.689 37.500 0.00 7.26 0.00 2.87
3356 5840 5.240403 GGAGCAAAATGAGTGAACTTCTTCT 59.760 40.000 0.00 0.00 0.00 2.85
3357 5841 5.009010 TGGAGCAAAATGAGTGAACTTCTTC 59.991 40.000 0.00 0.00 0.00 2.87
3358 5842 4.889409 TGGAGCAAAATGAGTGAACTTCTT 59.111 37.500 0.00 0.00 0.00 2.52
3359 5843 4.464008 TGGAGCAAAATGAGTGAACTTCT 58.536 39.130 0.00 0.00 0.00 2.85
3360 5844 4.836125 TGGAGCAAAATGAGTGAACTTC 57.164 40.909 0.00 0.00 0.00 3.01
3361 5845 6.435277 ACATATGGAGCAAAATGAGTGAACTT 59.565 34.615 7.80 0.00 0.00 2.66
3362 5846 5.948162 ACATATGGAGCAAAATGAGTGAACT 59.052 36.000 7.80 0.00 0.00 3.01
3363 5847 6.199937 ACATATGGAGCAAAATGAGTGAAC 57.800 37.500 7.80 0.00 0.00 3.18
3364 5848 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
3365 5849 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
3366 5850 6.017605 GGACTACATATGGAGCAAAATGAGTG 60.018 42.308 15.30 0.00 0.00 3.51
3367 5851 6.058183 GGACTACATATGGAGCAAAATGAGT 58.942 40.000 15.30 0.00 0.00 3.41
3368 5852 6.057533 TGGACTACATATGGAGCAAAATGAG 58.942 40.000 15.30 0.00 0.00 2.90
3369 5853 6.000246 TGGACTACATATGGAGCAAAATGA 58.000 37.500 15.30 0.00 0.00 2.57
3370 5854 6.889301 ATGGACTACATATGGAGCAAAATG 57.111 37.500 15.30 0.00 38.26 2.32
3406 5890 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3407 5891 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3408 5892 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3409 5893 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3410 5894 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3411 5895 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3412 5896 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3413 5897 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3414 5898 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3415 5899 8.591072 CAAATACTCCCTCCGTTCCTAAATATA 58.409 37.037 0.00 0.00 0.00 0.86
3416 5900 7.072076 ACAAATACTCCCTCCGTTCCTAAATAT 59.928 37.037 0.00 0.00 0.00 1.28
3417 5901 6.384886 ACAAATACTCCCTCCGTTCCTAAATA 59.615 38.462 0.00 0.00 0.00 1.40
3418 5902 5.191124 ACAAATACTCCCTCCGTTCCTAAAT 59.809 40.000 0.00 0.00 0.00 1.40
3419 5903 4.533311 ACAAATACTCCCTCCGTTCCTAAA 59.467 41.667 0.00 0.00 0.00 1.85
3420 5904 4.081309 CACAAATACTCCCTCCGTTCCTAA 60.081 45.833 0.00 0.00 0.00 2.69
3421 5905 3.449737 CACAAATACTCCCTCCGTTCCTA 59.550 47.826 0.00 0.00 0.00 2.94
3422 5906 2.236395 CACAAATACTCCCTCCGTTCCT 59.764 50.000 0.00 0.00 0.00 3.36
3423 5907 2.235402 TCACAAATACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
3424 5908 3.604875 TCACAAATACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
3425 5909 4.360951 TTTCACAAATACTCCCTCCGTT 57.639 40.909 0.00 0.00 0.00 4.44
3426 5910 4.514401 GATTTCACAAATACTCCCTCCGT 58.486 43.478 0.00 0.00 0.00 4.69
3427 5911 3.555956 CGATTTCACAAATACTCCCTCCG 59.444 47.826 0.00 0.00 0.00 4.63
3428 5912 4.332819 CACGATTTCACAAATACTCCCTCC 59.667 45.833 0.00 0.00 0.00 4.30
3429 5913 4.201822 GCACGATTTCACAAATACTCCCTC 60.202 45.833 0.00 0.00 0.00 4.30
3430 5914 3.689649 GCACGATTTCACAAATACTCCCT 59.310 43.478 0.00 0.00 0.00 4.20
3431 5915 3.438781 TGCACGATTTCACAAATACTCCC 59.561 43.478 0.00 0.00 0.00 4.30
3432 5916 4.678509 TGCACGATTTCACAAATACTCC 57.321 40.909 0.00 0.00 0.00 3.85
3433 5917 6.086222 ACAATGCACGATTTCACAAATACTC 58.914 36.000 0.00 0.00 0.00 2.59
3434 5918 6.012658 ACAATGCACGATTTCACAAATACT 57.987 33.333 0.00 0.00 0.00 2.12
3435 5919 7.240674 TCTACAATGCACGATTTCACAAATAC 58.759 34.615 0.00 0.00 0.00 1.89
3436 5920 7.371126 TCTACAATGCACGATTTCACAAATA 57.629 32.000 0.00 0.00 0.00 1.40
3437 5921 6.252967 TCTACAATGCACGATTTCACAAAT 57.747 33.333 0.00 0.00 0.00 2.32
3438 5922 5.681337 TCTACAATGCACGATTTCACAAA 57.319 34.783 0.00 0.00 0.00 2.83
3439 5923 5.334802 CCTTCTACAATGCACGATTTCACAA 60.335 40.000 0.00 0.00 0.00 3.33
3440 5924 4.154015 CCTTCTACAATGCACGATTTCACA 59.846 41.667 0.00 0.00 0.00 3.58
3441 5925 4.154195 ACCTTCTACAATGCACGATTTCAC 59.846 41.667 0.00 0.00 0.00 3.18
3442 5926 4.323417 ACCTTCTACAATGCACGATTTCA 58.677 39.130 0.00 0.00 0.00 2.69
3443 5927 4.946784 ACCTTCTACAATGCACGATTTC 57.053 40.909 0.00 0.00 0.00 2.17
3444 5928 5.488341 ACTACCTTCTACAATGCACGATTT 58.512 37.500 0.00 0.00 0.00 2.17
3445 5929 5.086104 ACTACCTTCTACAATGCACGATT 57.914 39.130 0.00 0.00 0.00 3.34
3446 5930 4.737855 ACTACCTTCTACAATGCACGAT 57.262 40.909 0.00 0.00 0.00 3.73
3589 6079 1.366111 ATGATACGCGTGGTTGGCAC 61.366 55.000 24.59 4.60 0.00 5.01
3617 6107 5.681337 TGTTTGATACGCATGTTCTCAAA 57.319 34.783 9.36 9.36 36.76 2.69
3618 6108 5.334802 CCTTGTTTGATACGCATGTTCTCAA 60.335 40.000 0.00 0.00 30.96 3.02
3619 6109 4.154015 CCTTGTTTGATACGCATGTTCTCA 59.846 41.667 0.00 0.00 0.00 3.27
3629 6119 6.129393 CGCATTAATCTCCTTGTTTGATACG 58.871 40.000 0.00 0.00 0.00 3.06
3635 6125 3.963129 TCCCGCATTAATCTCCTTGTTT 58.037 40.909 0.00 0.00 0.00 2.83
3638 6128 3.313526 CAGTTCCCGCATTAATCTCCTTG 59.686 47.826 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.