Multiple sequence alignment - TraesCS1D01G321200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G321200 chr1D 100.000 5257 0 0 1 5257 414714749 414720005 0.000000e+00 9708.0
1 TraesCS1D01G321200 chr1D 78.143 2649 376 98 946 3469 414736832 414739402 0.000000e+00 1496.0
2 TraesCS1D01G321200 chr1D 96.817 597 5 2 1 584 428613838 428613243 0.000000e+00 985.0
3 TraesCS1D01G321200 chr1D 84.553 246 28 5 3932 4176 414740056 414740292 8.800000e-58 235.0
4 TraesCS1D01G321200 chr1D 87.195 164 20 1 4718 4881 414741025 414741187 8.990000e-43 185.0
5 TraesCS1D01G321200 chr1D 84.906 159 15 6 4276 4425 414740483 414740641 9.120000e-33 152.0
6 TraesCS1D01G321200 chr1D 97.826 46 1 0 4497 4542 414740666 414740711 4.360000e-11 80.5
7 TraesCS1D01G321200 chr1B 86.683 2478 236 51 1159 3591 560182507 560184935 0.000000e+00 2662.0
8 TraesCS1D01G321200 chr1B 83.447 1764 249 27 1243 2983 560491345 560493088 0.000000e+00 1600.0
9 TraesCS1D01G321200 chr1B 89.358 1043 59 13 4042 5053 560209298 560210319 0.000000e+00 1264.0
10 TraesCS1D01G321200 chr1B 79.020 2021 292 55 1537 3469 560217112 560219088 0.000000e+00 1262.0
11 TraesCS1D01G321200 chr1B 82.489 1422 197 27 1642 3046 560501969 560503355 0.000000e+00 1199.0
12 TraesCS1D01G321200 chr1B 91.026 390 13 2 3582 3963 560208896 560209271 1.690000e-139 507.0
13 TraesCS1D01G321200 chr1B 82.495 497 68 11 3443 3925 560219093 560219584 8.140000e-113 418.0
14 TraesCS1D01G321200 chr1B 84.190 253 26 9 3932 4181 560219705 560219946 3.170000e-57 233.0
15 TraesCS1D01G321200 chr1B 77.500 320 48 21 767 1072 560182156 560182465 2.520000e-38 171.0
16 TraesCS1D01G321200 chr1B 85.987 157 8 5 5103 5257 560210322 560210466 7.050000e-34 156.0
17 TraesCS1D01G321200 chr1B 92.708 96 3 2 4508 4599 560220262 560220357 9.180000e-28 135.0
18 TraesCS1D01G321200 chr1B 78.417 139 28 2 1956 2093 560498303 560498440 7.250000e-14 89.8
19 TraesCS1D01G321200 chr1A 83.535 1822 265 24 1242 3046 511623405 511625208 0.000000e+00 1670.0
20 TraesCS1D01G321200 chr1A 83.658 1744 229 28 1309 3023 511485736 511487452 0.000000e+00 1591.0
21 TraesCS1D01G321200 chr1A 93.253 578 24 2 10 574 565151279 565151854 0.000000e+00 837.0
22 TraesCS1D01G321200 chr1A 78.922 1020 142 39 3208 4181 511625360 511626352 4.470000e-175 625.0
23 TraesCS1D01G321200 chr1A 83.234 501 65 11 3443 3930 511487971 511488465 4.830000e-120 442.0
24 TraesCS1D01G321200 chr1A 84.400 250 30 4 3932 4181 511488585 511488825 2.450000e-58 237.0
25 TraesCS1D01G321200 chr1A 76.445 467 42 29 3058 3469 511487513 511487966 1.930000e-44 191.0
26 TraesCS1D01G321200 chr1A 76.018 442 46 24 4222 4637 511630769 511631176 1.950000e-39 174.0
27 TraesCS1D01G321200 chr1A 76.562 320 50 21 767 1072 511485310 511485618 9.120000e-33 152.0
28 TraesCS1D01G321200 chr1A 96.154 52 2 0 4497 4548 511489197 511489248 9.380000e-13 86.1
29 TraesCS1D01G321200 chr3D 96.422 587 8 1 1 574 578904768 578905354 0.000000e+00 955.0
30 TraesCS1D01G321200 chr3D 96.422 587 4 2 1 574 572502469 572501887 0.000000e+00 952.0
31 TraesCS1D01G321200 chr7D 95.719 584 11 2 1 571 69446070 69445488 0.000000e+00 928.0
32 TraesCS1D01G321200 chr2B 93.955 579 19 9 10 575 520926372 520926947 0.000000e+00 861.0
33 TraesCS1D01G321200 chr5A 93.955 579 18 9 10 574 609201102 609201677 0.000000e+00 859.0
34 TraesCS1D01G321200 chr5A 93.391 575 22 2 16 574 137041125 137040551 0.000000e+00 837.0
35 TraesCS1D01G321200 chr3B 93.782 579 19 9 10 574 779517547 779518122 0.000000e+00 854.0
36 TraesCS1D01G321200 chr3B 93.299 582 24 2 10 578 735975273 735975852 0.000000e+00 845.0
37 TraesCS1D01G321200 chr6B 93.092 579 25 2 10 575 202354113 202354689 0.000000e+00 833.0
38 TraesCS1D01G321200 chr4A 83.019 106 16 2 5152 5257 7190344 7190241 1.560000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G321200 chr1D 414714749 414720005 5256 False 9708.000000 9708 100.000000 1 5257 1 chr1D.!!$F1 5256
1 TraesCS1D01G321200 chr1D 428613243 428613838 595 True 985.000000 985 96.817000 1 584 1 chr1D.!!$R1 583
2 TraesCS1D01G321200 chr1D 414736832 414741187 4355 False 429.700000 1496 86.524600 946 4881 5 chr1D.!!$F2 3935
3 TraesCS1D01G321200 chr1B 560491345 560493088 1743 False 1600.000000 1600 83.447000 1243 2983 1 chr1B.!!$F1 1740
4 TraesCS1D01G321200 chr1B 560182156 560184935 2779 False 1416.500000 2662 82.091500 767 3591 2 chr1B.!!$F2 2824
5 TraesCS1D01G321200 chr1B 560498303 560503355 5052 False 644.400000 1199 80.453000 1642 3046 2 chr1B.!!$F5 1404
6 TraesCS1D01G321200 chr1B 560208896 560210466 1570 False 642.333333 1264 88.790333 3582 5257 3 chr1B.!!$F3 1675
7 TraesCS1D01G321200 chr1B 560217112 560220357 3245 False 512.000000 1262 84.603250 1537 4599 4 chr1B.!!$F4 3062
8 TraesCS1D01G321200 chr1A 511623405 511626352 2947 False 1147.500000 1670 81.228500 1242 4181 2 chr1A.!!$F4 2939
9 TraesCS1D01G321200 chr1A 565151279 565151854 575 False 837.000000 837 93.253000 10 574 1 chr1A.!!$F2 564
10 TraesCS1D01G321200 chr1A 511485310 511489248 3938 False 449.850000 1591 83.408833 767 4548 6 chr1A.!!$F3 3781
11 TraesCS1D01G321200 chr3D 578904768 578905354 586 False 955.000000 955 96.422000 1 574 1 chr3D.!!$F1 573
12 TraesCS1D01G321200 chr3D 572501887 572502469 582 True 952.000000 952 96.422000 1 574 1 chr3D.!!$R1 573
13 TraesCS1D01G321200 chr7D 69445488 69446070 582 True 928.000000 928 95.719000 1 571 1 chr7D.!!$R1 570
14 TraesCS1D01G321200 chr2B 520926372 520926947 575 False 861.000000 861 93.955000 10 575 1 chr2B.!!$F1 565
15 TraesCS1D01G321200 chr5A 609201102 609201677 575 False 859.000000 859 93.955000 10 574 1 chr5A.!!$F1 564
16 TraesCS1D01G321200 chr5A 137040551 137041125 574 True 837.000000 837 93.391000 16 574 1 chr5A.!!$R1 558
17 TraesCS1D01G321200 chr3B 779517547 779518122 575 False 854.000000 854 93.782000 10 574 1 chr3B.!!$F2 564
18 TraesCS1D01G321200 chr3B 735975273 735975852 579 False 845.000000 845 93.299000 10 578 1 chr3B.!!$F1 568
19 TraesCS1D01G321200 chr6B 202354113 202354689 576 False 833.000000 833 93.092000 10 575 1 chr6B.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
801 819 0.678048 GCTGAGAGACGGCCCATTTT 60.678 55.0 0.00 0.00 44.40 1.82 F
1445 1530 0.036306 AAGCAAACCCGACGGATCTT 59.964 50.0 17.49 7.74 0.00 2.40 F
2345 4397 0.314935 CACGGCTCAACAATTTGGCT 59.685 50.0 0.78 0.00 33.06 4.75 F
4013 6392 0.604780 CTGTGTGGGCTCTGGAAGTG 60.605 60.0 0.00 0.00 33.76 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1676 3702 0.097674 CCAAATTCTCGAGCCTTGCG 59.902 55.0 7.81 2.20 0.0 4.85 R
2486 4538 0.892755 ATGTTGCAAGCACATCCTGG 59.107 50.0 0.00 0.00 0.0 4.45 R
4208 6623 0.321671 AGTAGTGTTGCTGTGCCGAT 59.678 50.0 0.00 0.00 0.0 4.18 R
5070 7760 0.398318 AGGAAACTCACCTGCAGACC 59.602 55.0 17.39 5.32 32.9 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
579 597 4.725721 CCGAACGGAGGGAGTATCTCCT 62.726 59.091 14.29 0.00 46.43 3.69
580 598 5.389365 CCGAACGGAGGGAGTATCTCCTA 62.389 56.522 14.29 0.00 46.43 2.94
590 608 4.924625 GGAGTATCTCCTAGTAGATGCCA 58.075 47.826 8.03 0.00 46.41 4.92
591 609 5.515106 GGAGTATCTCCTAGTAGATGCCAT 58.485 45.833 8.03 0.00 46.41 4.40
592 610 5.592688 GGAGTATCTCCTAGTAGATGCCATC 59.407 48.000 8.03 0.00 46.41 3.51
593 611 6.401537 AGTATCTCCTAGTAGATGCCATCT 57.598 41.667 12.62 12.62 38.84 2.90
594 612 7.366101 GGAGTATCTCCTAGTAGATGCCATCTA 60.366 44.444 10.37 10.37 46.41 1.98
606 624 6.763715 AGATGCCATCTACATACCCTAAAA 57.236 37.500 5.13 0.00 38.00 1.52
607 625 7.149202 AGATGCCATCTACATACCCTAAAAA 57.851 36.000 5.13 0.00 38.00 1.94
629 647 4.994907 AAATGTCATCCACACATGATGG 57.005 40.909 12.85 12.85 40.02 3.51
630 648 3.657398 ATGTCATCCACACATGATGGT 57.343 42.857 16.91 2.81 40.02 3.55
631 649 3.438216 TGTCATCCACACATGATGGTT 57.562 42.857 16.91 8.87 40.02 3.67
632 650 3.765381 TGTCATCCACACATGATGGTTT 58.235 40.909 16.91 6.82 40.02 3.27
634 652 3.507233 GTCATCCACACATGATGGTTTGT 59.493 43.478 16.91 0.26 40.02 2.83
635 653 3.506844 TCATCCACACATGATGGTTTGTG 59.493 43.478 16.91 11.41 46.76 3.33
636 654 3.220674 TCCACACATGATGGTTTGTGA 57.779 42.857 14.07 1.28 44.74 3.58
637 655 3.765381 TCCACACATGATGGTTTGTGAT 58.235 40.909 14.07 0.00 44.74 3.06
638 656 3.506844 TCCACACATGATGGTTTGTGATG 59.493 43.478 14.07 1.86 44.74 3.07
639 657 3.247442 CACACATGATGGTTTGTGATGC 58.753 45.455 8.47 0.00 44.74 3.91
640 658 2.892215 ACACATGATGGTTTGTGATGCA 59.108 40.909 9.80 0.00 44.74 3.96
641 659 3.512329 ACACATGATGGTTTGTGATGCAT 59.488 39.130 0.00 0.00 44.74 3.96
642 660 4.705991 ACACATGATGGTTTGTGATGCATA 59.294 37.500 0.00 0.00 44.74 3.14
643 661 5.038683 CACATGATGGTTTGTGATGCATAC 58.961 41.667 0.00 0.00 44.74 2.39
644 662 4.705991 ACATGATGGTTTGTGATGCATACA 59.294 37.500 0.00 1.88 31.85 2.29
645 663 5.185442 ACATGATGGTTTGTGATGCATACAA 59.815 36.000 0.00 8.30 36.34 2.41
646 664 5.718724 TGATGGTTTGTGATGCATACAAA 57.281 34.783 20.77 20.77 43.50 2.83
647 665 6.283544 TGATGGTTTGTGATGCATACAAAT 57.716 33.333 24.32 15.55 46.14 2.32
648 666 6.699366 TGATGGTTTGTGATGCATACAAATT 58.301 32.000 24.32 17.15 46.14 1.82
650 668 8.309656 TGATGGTTTGTGATGCATACAAATTTA 58.690 29.630 24.32 17.83 46.14 1.40
651 669 9.149225 GATGGTTTGTGATGCATACAAATTTAA 57.851 29.630 24.32 16.06 46.14 1.52
652 670 8.893219 TGGTTTGTGATGCATACAAATTTAAA 57.107 26.923 24.32 13.39 46.14 1.52
653 671 9.330063 TGGTTTGTGATGCATACAAATTTAAAA 57.670 25.926 24.32 12.35 46.14 1.52
654 672 9.810231 GGTTTGTGATGCATACAAATTTAAAAG 57.190 29.630 24.32 0.00 46.14 2.27
656 674 7.275697 TGTGATGCATACAAATTTAAAAGCG 57.724 32.000 0.00 0.00 0.00 4.68
657 675 7.087007 TGTGATGCATACAAATTTAAAAGCGA 58.913 30.769 0.00 0.00 0.00 4.93
659 677 7.484641 GTGATGCATACAAATTTAAAAGCGAGA 59.515 33.333 0.00 0.00 0.00 4.04
660 678 8.026026 TGATGCATACAAATTTAAAAGCGAGAA 58.974 29.630 0.00 0.00 0.00 2.87
661 679 7.795431 TGCATACAAATTTAAAAGCGAGAAG 57.205 32.000 0.00 0.00 0.00 2.85
678 696 6.653273 CGAGAAGCAGAAAGAATGTTATGA 57.347 37.500 0.00 0.00 0.00 2.15
679 697 6.473521 CGAGAAGCAGAAAGAATGTTATGAC 58.526 40.000 0.00 0.00 0.00 3.06
680 698 6.091305 CGAGAAGCAGAAAGAATGTTATGACA 59.909 38.462 0.00 0.00 40.71 3.58
681 699 7.360353 CGAGAAGCAGAAAGAATGTTATGACAA 60.360 37.037 0.00 0.00 39.66 3.18
682 700 8.169977 AGAAGCAGAAAGAATGTTATGACAAA 57.830 30.769 0.00 0.00 39.66 2.83
683 701 8.800332 AGAAGCAGAAAGAATGTTATGACAAAT 58.200 29.630 0.00 0.00 39.66 2.32
685 703 8.114331 AGCAGAAAGAATGTTATGACAAATCA 57.886 30.769 0.00 0.00 39.66 2.57
686 704 8.242053 AGCAGAAAGAATGTTATGACAAATCAG 58.758 33.333 0.00 0.00 39.66 2.90
687 705 8.025445 GCAGAAAGAATGTTATGACAAATCAGT 58.975 33.333 0.00 0.00 39.66 3.41
688 706 9.338291 CAGAAAGAATGTTATGACAAATCAGTG 57.662 33.333 0.00 0.00 39.66 3.66
735 753 6.844097 TGACAGTTTTTCTAGGGTTTTGTT 57.156 33.333 0.00 0.00 0.00 2.83
736 754 7.234661 TGACAGTTTTTCTAGGGTTTTGTTT 57.765 32.000 0.00 0.00 0.00 2.83
737 755 7.093992 TGACAGTTTTTCTAGGGTTTTGTTTG 58.906 34.615 0.00 0.00 0.00 2.93
738 756 6.999950 ACAGTTTTTCTAGGGTTTTGTTTGT 58.000 32.000 0.00 0.00 0.00 2.83
739 757 6.871492 ACAGTTTTTCTAGGGTTTTGTTTGTG 59.129 34.615 0.00 0.00 0.00 3.33
740 758 5.872617 AGTTTTTCTAGGGTTTTGTTTGTGC 59.127 36.000 0.00 0.00 0.00 4.57
741 759 5.407407 TTTTCTAGGGTTTTGTTTGTGCA 57.593 34.783 0.00 0.00 0.00 4.57
743 761 5.606348 TTCTAGGGTTTTGTTTGTGCAAT 57.394 34.783 0.00 0.00 0.00 3.56
744 762 5.606348 TCTAGGGTTTTGTTTGTGCAATT 57.394 34.783 0.00 0.00 0.00 2.32
745 763 5.983540 TCTAGGGTTTTGTTTGTGCAATTT 58.016 33.333 0.00 0.00 0.00 1.82
746 764 6.410540 TCTAGGGTTTTGTTTGTGCAATTTT 58.589 32.000 0.00 0.00 0.00 1.82
747 765 5.307926 AGGGTTTTGTTTGTGCAATTTTG 57.692 34.783 0.00 0.00 0.00 2.44
748 766 5.006386 AGGGTTTTGTTTGTGCAATTTTGA 58.994 33.333 0.00 0.00 0.00 2.69
749 767 5.123661 AGGGTTTTGTTTGTGCAATTTTGAG 59.876 36.000 0.00 0.00 0.00 3.02
750 768 5.331098 GGTTTTGTTTGTGCAATTTTGAGG 58.669 37.500 0.00 0.00 0.00 3.86
752 770 3.902881 TGTTTGTGCAATTTTGAGGGT 57.097 38.095 0.00 0.00 0.00 4.34
753 771 4.213564 TGTTTGTGCAATTTTGAGGGTT 57.786 36.364 0.00 0.00 0.00 4.11
754 772 4.583871 TGTTTGTGCAATTTTGAGGGTTT 58.416 34.783 0.00 0.00 0.00 3.27
755 773 4.394300 TGTTTGTGCAATTTTGAGGGTTTG 59.606 37.500 0.00 0.00 0.00 2.93
756 774 3.902881 TGTGCAATTTTGAGGGTTTGT 57.097 38.095 0.00 0.00 0.00 2.83
757 775 3.791245 TGTGCAATTTTGAGGGTTTGTC 58.209 40.909 0.00 0.00 0.00 3.18
758 776 3.450457 TGTGCAATTTTGAGGGTTTGTCT 59.550 39.130 0.00 0.00 0.00 3.41
759 777 4.081198 TGTGCAATTTTGAGGGTTTGTCTT 60.081 37.500 0.00 0.00 0.00 3.01
760 778 4.875536 GTGCAATTTTGAGGGTTTGTCTTT 59.124 37.500 0.00 0.00 0.00 2.52
761 779 5.353956 GTGCAATTTTGAGGGTTTGTCTTTT 59.646 36.000 0.00 0.00 0.00 2.27
763 781 5.584251 GCAATTTTGAGGGTTTGTCTTTTCA 59.416 36.000 0.00 0.00 0.00 2.69
765 783 5.730296 TTTTGAGGGTTTGTCTTTTCACA 57.270 34.783 0.00 0.00 0.00 3.58
788 806 3.963733 CACATTCCTTGGGCTGAGA 57.036 52.632 0.00 0.00 0.00 3.27
801 819 0.678048 GCTGAGAGACGGCCCATTTT 60.678 55.000 0.00 0.00 44.40 1.82
843 863 4.329545 GCTCCACCACAGGCGGAA 62.330 66.667 0.00 0.00 33.10 4.30
844 864 2.671070 CTCCACCACAGGCGGAAT 59.329 61.111 0.00 0.00 33.10 3.01
848 868 0.893270 CCACCACAGGCGGAATTCAA 60.893 55.000 7.93 0.00 0.00 2.69
849 869 0.958091 CACCACAGGCGGAATTCAAA 59.042 50.000 7.93 0.00 0.00 2.69
850 870 1.068333 CACCACAGGCGGAATTCAAAG 60.068 52.381 7.93 0.00 0.00 2.77
869 889 4.607025 TTCAAACCACCCCGCCCC 62.607 66.667 0.00 0.00 0.00 5.80
871 891 4.924187 CAAACCACCCCGCCCCAA 62.924 66.667 0.00 0.00 0.00 4.12
872 892 4.614036 AAACCACCCCGCCCCAAG 62.614 66.667 0.00 0.00 0.00 3.61
894 914 2.263077 GAGTGCTACTGATTGACACGG 58.737 52.381 0.00 0.00 36.38 4.94
904 924 3.804036 TGATTGACACGGAAACAGAGTT 58.196 40.909 0.00 0.00 0.00 3.01
916 936 4.467735 GAAACAGAGTTGATTTCGAAGCC 58.532 43.478 0.00 0.00 0.00 4.35
929 949 1.968540 GAAGCCAAACTGCGCTCCT 60.969 57.895 9.73 0.00 33.09 3.69
932 952 2.684843 GCCAAACTGCGCTCCTCTG 61.685 63.158 9.73 0.00 0.00 3.35
933 953 1.302033 CCAAACTGCGCTCCTCTGT 60.302 57.895 9.73 0.00 0.00 3.41
938 958 3.274455 CTGCGCTCCTCTGTGTCGT 62.274 63.158 9.73 0.00 0.00 4.34
940 960 2.954611 CGCTCCTCTGTGTCGTCA 59.045 61.111 0.00 0.00 0.00 4.35
943 963 1.210413 CTCCTCTGTGTCGTCACCG 59.790 63.158 10.28 4.16 43.26 4.94
944 964 2.201436 CTCCTCTGTGTCGTCACCGG 62.201 65.000 10.28 0.00 43.26 5.28
947 967 4.293648 CTGTGTCGTCACCGGCCA 62.294 66.667 10.28 0.00 43.26 5.36
1055 1095 2.365237 GTCCCGCCTCCCTACCTT 60.365 66.667 0.00 0.00 0.00 3.50
1074 1114 1.221909 TCCCTCTCCCCTGCACTCTA 61.222 60.000 0.00 0.00 0.00 2.43
1083 1123 4.101114 TCCCCTGCACTCTACTGATTTTA 58.899 43.478 0.00 0.00 0.00 1.52
1093 1133 7.442364 GCACTCTACTGATTTTATTATGCTCCA 59.558 37.037 0.00 0.00 0.00 3.86
1112 1152 1.079681 CCCGGTTCCGTTCGATTCA 60.080 57.895 10.36 0.00 0.00 2.57
1117 1157 2.685100 GGTTCCGTTCGATTCAGTTCT 58.315 47.619 0.00 0.00 0.00 3.01
1130 1194 2.507324 GTTCTGCTCCTCGCCGTC 60.507 66.667 0.00 0.00 38.05 4.79
1137 1201 2.821366 TCCTCGCCGTCGTACTCC 60.821 66.667 0.00 0.00 36.96 3.85
1139 1203 2.403987 CTCGCCGTCGTACTCCTG 59.596 66.667 0.00 0.00 36.96 3.86
1142 1206 4.849329 GCCGTCGTACTCCTGGCG 62.849 72.222 0.00 0.00 35.77 5.69
1168 1247 1.995066 TGGTCTCACGGCCATGGAT 60.995 57.895 18.40 0.00 0.00 3.41
1197 1276 0.800012 GGCTGCCGATTTTTCGTGTA 59.200 50.000 1.35 0.00 0.00 2.90
1200 1279 2.845764 GCTGCCGATTTTTCGTGTATCG 60.846 50.000 0.00 0.00 40.48 2.92
1214 1293 2.641277 TATCGTGTGCGGTGCAGGA 61.641 57.895 0.00 0.00 40.08 3.86
1253 1335 3.571119 GACGAGGACGACGAGGAA 58.429 61.111 0.00 0.00 42.66 3.36
1263 1345 2.277756 ACGAGGAATACGCGACGC 60.278 61.111 15.93 10.49 45.76 5.19
1269 1351 1.480219 GGAATACGCGACGCTGGAAG 61.480 60.000 15.93 4.06 0.00 3.46
1284 1366 3.431683 GAAGCGCTCGTGATGCAGC 62.432 63.158 12.06 0.00 0.00 5.25
1285 1367 4.747529 AGCGCTCGTGATGCAGCA 62.748 61.111 2.64 0.00 35.15 4.41
1290 1372 4.783621 TCGTGATGCAGCAGGGGC 62.784 66.667 22.92 2.44 41.61 5.80
1339 1421 0.517316 GACGGCGCAGACTTTGAAAT 59.483 50.000 16.26 0.00 0.00 2.17
1340 1422 0.238289 ACGGCGCAGACTTTGAAATG 59.762 50.000 16.26 0.00 0.00 2.32
1360 1442 0.547471 TGGCAGGTTGGGATGAGAGA 60.547 55.000 0.00 0.00 0.00 3.10
1369 1451 0.980231 GGGATGAGAGACCACCTGCT 60.980 60.000 0.00 0.00 0.00 4.24
1445 1530 0.036306 AAGCAAACCCGACGGATCTT 59.964 50.000 17.49 7.74 0.00 2.40
1450 1535 2.311124 AACCCGACGGATCTTGAATC 57.689 50.000 17.49 0.00 0.00 2.52
1457 1542 3.551046 CGACGGATCTTGAATCGAGGAAT 60.551 47.826 0.00 0.00 34.77 3.01
1458 1543 3.722147 ACGGATCTTGAATCGAGGAATG 58.278 45.455 0.00 0.00 0.00 2.67
1542 1627 1.040646 GATCTGGCACCTCGATACCA 58.959 55.000 0.00 0.00 0.00 3.25
1559 1644 1.366435 ACCACTAAGGAGGTCTGGGAT 59.634 52.381 0.00 0.00 41.22 3.85
1613 1698 2.097038 CCGCGAGCTGAAGGTCAAG 61.097 63.158 8.23 2.98 42.28 3.02
1698 3724 2.704572 CAAGGCTCGAGAATTTGGTCT 58.295 47.619 18.75 0.00 0.00 3.85
1711 3737 5.771666 AGAATTTGGTCTTTGAGATGAAGCA 59.228 36.000 0.00 0.00 0.00 3.91
1712 3738 5.640189 ATTTGGTCTTTGAGATGAAGCAG 57.360 39.130 0.00 0.00 0.00 4.24
1744 3770 4.372656 GAAGAGGTGACCGATTCTTATGG 58.627 47.826 12.67 0.00 30.49 2.74
1752 3778 2.170607 ACCGATTCTTATGGTGTGAGGG 59.829 50.000 0.00 0.00 33.91 4.30
1785 3811 1.617804 CCATGGCACCAAGGAAGTCAT 60.618 52.381 4.93 0.00 36.99 3.06
1797 3823 2.437413 GGAAGTCATCCTTTGTGACCC 58.563 52.381 2.90 0.00 45.47 4.46
1808 3834 2.920724 TTGTGACCCTCATTCGTGAA 57.079 45.000 0.00 0.00 0.00 3.18
1813 3839 1.815421 CCCTCATTCGTGAAGGGCG 60.815 63.158 0.00 0.00 32.55 6.13
1817 3843 1.927174 CTCATTCGTGAAGGGCGTAAG 59.073 52.381 0.00 0.00 43.44 2.34
1825 3854 3.656559 GTGAAGGGCGTAAGTTAGAACA 58.343 45.455 0.00 0.00 41.68 3.18
1834 3863 2.833631 AAGTTAGAACACACCCCTCG 57.166 50.000 0.00 0.00 0.00 4.63
1835 3864 2.005370 AGTTAGAACACACCCCTCGA 57.995 50.000 0.00 0.00 0.00 4.04
1856 3894 4.679106 CGAGATGTGCTCCAAGTCTACAAT 60.679 45.833 0.00 0.00 40.70 2.71
1881 3922 4.095334 TGATGCAAGAACAATCCAGAATCG 59.905 41.667 0.00 0.00 0.00 3.34
1912 3960 1.672356 CAAGGGCGAAGGTGGACAG 60.672 63.158 0.00 0.00 0.00 3.51
1919 3967 0.600255 CGAAGGTGGACAGTGTCACC 60.600 60.000 25.35 25.35 35.52 4.02
1922 3970 2.504274 GGTGGACAGTGTCACCCGA 61.504 63.158 24.20 0.26 33.68 5.14
1924 3972 0.878961 GTGGACAGTGTCACCCGAAC 60.879 60.000 24.20 6.09 33.68 3.95
1951 3999 3.448686 CCGACTACGATGAAGATTGCTT 58.551 45.455 0.00 0.00 42.66 3.91
2063 4111 3.305608 GGAGAATTGTGGAAACTGGCTTG 60.306 47.826 0.00 0.00 0.00 4.01
2328 4380 4.134563 GTCCCCCAATGACATGTATACAC 58.865 47.826 7.96 0.00 32.91 2.90
2345 4397 0.314935 CACGGCTCAACAATTTGGCT 59.685 50.000 0.78 0.00 33.06 4.75
2410 4462 5.526846 CCTATCTTGTGAGGAAGATGCTTTC 59.473 44.000 0.00 0.00 41.75 2.62
2430 4482 1.607467 GCCATGGCACCAAGGAACT 60.607 57.895 32.08 0.00 40.75 3.01
2431 4483 1.187567 GCCATGGCACCAAGGAACTT 61.188 55.000 32.08 0.00 46.15 2.66
2480 4532 7.058023 TGTGAAGCCTAACTTTGAACTACTA 57.942 36.000 0.00 0.00 39.29 1.82
2486 4538 5.494724 CCTAACTTTGAACTACTAACCCCC 58.505 45.833 0.00 0.00 0.00 5.40
2576 4628 1.866880 GCTTTGCCACACTCAAGCAAG 60.867 52.381 0.00 0.00 46.30 4.01
2725 4778 7.997773 AGAAGTATAAAGGGTTTCTTGGAAC 57.002 36.000 0.00 0.00 35.55 3.62
2740 4793 3.973206 TGGAACGAAAGGCTATGAAGA 57.027 42.857 0.00 0.00 0.00 2.87
2746 4799 6.072673 GGAACGAAAGGCTATGAAGAAAGAAA 60.073 38.462 0.00 0.00 0.00 2.52
2778 4831 4.389374 TGACAAGTCCAAGATGAGGAAAC 58.611 43.478 0.00 0.00 36.80 2.78
2804 4857 7.446319 CCAAAGAGATATTGCTATCAATGTGGA 59.554 37.037 2.03 0.00 42.50 4.02
2858 4914 6.446909 AAGGAGGACAAGAAAGAAGAGAAT 57.553 37.500 0.00 0.00 0.00 2.40
2862 4918 5.803552 AGGACAAGAAAGAAGAGAATGAGG 58.196 41.667 0.00 0.00 0.00 3.86
2864 4920 6.043706 AGGACAAGAAAGAAGAGAATGAGGAA 59.956 38.462 0.00 0.00 0.00 3.36
2907 4963 1.363807 GACAACAAGGGCAAGCCAC 59.636 57.895 13.87 2.47 37.98 5.01
2922 4978 2.034687 CACACAAGCCAGAGGGGG 59.965 66.667 0.00 0.00 37.04 5.40
2932 4988 1.275421 CCAGAGGGGGAGAAAGGTCC 61.275 65.000 0.00 0.00 35.64 4.46
2986 5042 5.906073 GCATAATTTGCCATGAAGTAGGTT 58.094 37.500 0.00 0.00 46.15 3.50
2989 5045 8.792633 GCATAATTTGCCATGAAGTAGGTTATA 58.207 33.333 0.00 0.00 46.15 0.98
3010 5066 8.794406 GTTATAAAATGTTCTGCGTTACAATGG 58.206 33.333 0.00 0.00 0.00 3.16
3011 5067 4.846779 AAATGTTCTGCGTTACAATGGT 57.153 36.364 0.00 0.00 0.00 3.55
3013 5069 1.265635 TGTTCTGCGTTACAATGGTGC 59.734 47.619 0.00 0.00 0.00 5.01
3048 5141 1.571955 GGATTCAGGGTGGCCAATTT 58.428 50.000 7.24 0.00 0.00 1.82
3049 5142 1.908619 GGATTCAGGGTGGCCAATTTT 59.091 47.619 7.24 0.00 0.00 1.82
3050 5143 2.305635 GGATTCAGGGTGGCCAATTTTT 59.694 45.455 7.24 0.00 0.00 1.94
3051 5144 3.599343 GATTCAGGGTGGCCAATTTTTC 58.401 45.455 7.24 0.00 0.00 2.29
3052 5145 2.094100 TCAGGGTGGCCAATTTTTCA 57.906 45.000 7.24 0.00 0.00 2.69
3053 5146 1.969923 TCAGGGTGGCCAATTTTTCAG 59.030 47.619 7.24 0.00 0.00 3.02
3054 5147 1.002315 CAGGGTGGCCAATTTTTCAGG 59.998 52.381 7.24 0.00 0.00 3.86
3055 5148 1.132881 AGGGTGGCCAATTTTTCAGGA 60.133 47.619 7.24 0.00 0.00 3.86
3056 5149 1.908619 GGGTGGCCAATTTTTCAGGAT 59.091 47.619 7.24 0.00 0.00 3.24
3057 5150 2.305635 GGGTGGCCAATTTTTCAGGATT 59.694 45.455 7.24 0.00 0.00 3.01
3058 5151 3.244875 GGGTGGCCAATTTTTCAGGATTT 60.245 43.478 7.24 0.00 0.00 2.17
3274 5398 5.843421 AGATTCAGGCCTTATCTGATAGTGT 59.157 40.000 21.16 1.14 40.46 3.55
3457 5653 1.135972 CAACGGCATGTGAAGCTACAC 60.136 52.381 0.00 0.00 40.68 2.90
3469 5665 3.003585 TGAAGCTACACTGCACATTGTTG 59.996 43.478 0.00 0.00 34.99 3.33
3573 5778 5.862924 ACGGTTATGCAGTTCATATATGC 57.137 39.130 7.92 0.00 37.49 3.14
3649 5863 6.314018 TGTATCTTGAAATGCGCTAAAGTTG 58.686 36.000 9.73 0.00 0.00 3.16
3752 5967 7.335673 TCACCATTTGCAGATATTTAAAGTCGA 59.664 33.333 0.00 0.00 0.00 4.20
3815 6032 8.077991 ACTGTTCACTGTTATGTTTGATCATTG 58.922 33.333 0.00 0.00 0.00 2.82
3999 6378 3.006859 TCATCACTTCGTCAATCCTGTGT 59.993 43.478 0.00 0.00 0.00 3.72
4011 6390 1.002868 CCTGTGTGGGCTCTGGAAG 60.003 63.158 0.00 0.00 31.50 3.46
4012 6391 1.757306 CTGTGTGGGCTCTGGAAGT 59.243 57.895 0.00 0.00 33.76 3.01
4013 6392 0.604780 CTGTGTGGGCTCTGGAAGTG 60.605 60.000 0.00 0.00 33.76 3.16
4014 6393 1.344953 TGTGTGGGCTCTGGAAGTGT 61.345 55.000 0.00 0.00 33.76 3.55
4015 6394 0.685097 GTGTGGGCTCTGGAAGTGTA 59.315 55.000 0.00 0.00 33.76 2.90
4016 6395 0.976641 TGTGGGCTCTGGAAGTGTAG 59.023 55.000 0.00 0.00 33.76 2.74
4017 6396 0.977395 GTGGGCTCTGGAAGTGTAGT 59.023 55.000 0.00 0.00 33.76 2.73
4018 6397 0.976641 TGGGCTCTGGAAGTGTAGTG 59.023 55.000 0.00 0.00 33.76 2.74
4019 6398 1.267121 GGGCTCTGGAAGTGTAGTGA 58.733 55.000 0.00 0.00 33.76 3.41
4022 6401 2.419297 GGCTCTGGAAGTGTAGTGATGG 60.419 54.545 0.00 0.00 33.76 3.51
4208 6623 3.444818 AAGGAAACCTGCCGCCCAA 62.445 57.895 0.00 0.00 32.13 4.12
4209 6624 2.679996 GGAAACCTGCCGCCCAAT 60.680 61.111 0.00 0.00 0.00 3.16
4265 6723 1.997874 GGAGGAGTGATGGCACCCT 60.998 63.158 0.00 0.00 46.32 4.34
4394 6885 0.179163 GATTTGCACCTGTTAGCGCC 60.179 55.000 2.29 0.00 0.00 6.53
4554 7151 1.134371 GGGCTAGGTGTGATGTCTTCC 60.134 57.143 0.00 0.00 0.00 3.46
4582 7179 2.223377 CGCACTTGTAGTTCCAAACCTC 59.777 50.000 0.00 0.00 0.00 3.85
4612 7209 3.077359 GCCCAGTATAAGATGCATGGAC 58.923 50.000 2.46 0.00 0.00 4.02
4637 7234 1.068753 AGGCGGCATCATCGAGAAG 59.931 57.895 13.08 0.00 0.00 2.85
4648 7245 4.442375 TCATCGAGAAGGTGAAAGACTC 57.558 45.455 0.00 0.00 36.97 3.36
4677 7274 3.389329 TCTCTCTTTCCACTCTGCTTTGT 59.611 43.478 0.00 0.00 0.00 2.83
4709 7306 9.482627 GAATAATCGATCTTTCCACTCTGTTAT 57.517 33.333 0.00 0.00 0.00 1.89
4757 7438 8.430801 AGTGAGAATAATGTATTTCTGCAGAC 57.569 34.615 18.03 6.07 0.00 3.51
4815 7496 1.148310 GACATGATTCCATACGCCGG 58.852 55.000 0.00 0.00 0.00 6.13
4859 7540 3.938963 GACCATTCCGATGCTTTCTTGTA 59.061 43.478 0.00 0.00 31.67 2.41
4906 7595 6.136071 GTGTGTGTGTAATTCTGCTTGTAAG 58.864 40.000 0.00 0.00 0.00 2.34
4907 7596 6.018262 GTGTGTGTGTAATTCTGCTTGTAAGA 60.018 38.462 0.00 0.00 0.00 2.10
4908 7597 6.540551 TGTGTGTGTAATTCTGCTTGTAAGAA 59.459 34.615 0.00 0.00 38.01 2.52
4909 7598 7.072030 GTGTGTGTAATTCTGCTTGTAAGAAG 58.928 38.462 0.00 0.00 37.10 2.85
4910 7599 6.765989 TGTGTGTAATTCTGCTTGTAAGAAGT 59.234 34.615 0.00 0.00 37.10 3.01
4911 7600 7.072030 GTGTGTAATTCTGCTTGTAAGAAGTG 58.928 38.462 0.00 0.00 37.10 3.16
4912 7601 6.765989 TGTGTAATTCTGCTTGTAAGAAGTGT 59.234 34.615 0.00 0.00 37.10 3.55
4913 7602 7.929245 TGTGTAATTCTGCTTGTAAGAAGTGTA 59.071 33.333 0.00 0.00 37.10 2.90
4914 7603 8.221766 GTGTAATTCTGCTTGTAAGAAGTGTAC 58.778 37.037 0.00 0.00 37.10 2.90
4926 7615 9.936759 TTGTAAGAAGTGTACATCAATACATCA 57.063 29.630 0.00 0.00 37.40 3.07
4932 7621 5.985530 AGTGTACATCAATACATCATGGACG 59.014 40.000 0.00 0.00 37.40 4.79
4935 7624 4.129380 ACATCAATACATCATGGACGTGG 58.871 43.478 0.00 0.00 0.00 4.94
4941 7630 1.885887 ACATCATGGACGTGGTTTTGG 59.114 47.619 0.00 0.00 0.00 3.28
4959 7648 3.435105 TGGTGTTTTTGCTACTGCTTG 57.565 42.857 0.00 0.00 40.48 4.01
4974 7663 3.642848 ACTGCTTGGATGTTGGATGTTTT 59.357 39.130 0.00 0.00 0.00 2.43
4977 7666 4.100653 TGCTTGGATGTTGGATGTTTTTGA 59.899 37.500 0.00 0.00 0.00 2.69
4979 7668 6.014755 TGCTTGGATGTTGGATGTTTTTGATA 60.015 34.615 0.00 0.00 0.00 2.15
4980 7669 6.873076 GCTTGGATGTTGGATGTTTTTGATAA 59.127 34.615 0.00 0.00 0.00 1.75
4981 7670 7.550196 GCTTGGATGTTGGATGTTTTTGATAAT 59.450 33.333 0.00 0.00 0.00 1.28
4986 7675 7.773489 TGTTGGATGTTTTTGATAATCTCCA 57.227 32.000 0.00 0.00 0.00 3.86
5033 7723 5.163513 GGTCGTTTTCTAAAGACGGTCATA 58.836 41.667 11.27 2.45 41.74 2.15
5042 7732 7.165460 TCTAAAGACGGTCATAATCACAGAA 57.835 36.000 11.27 0.00 0.00 3.02
5053 7743 5.887598 TCATAATCACAGAAACATCTTGGGG 59.112 40.000 0.00 0.00 0.00 4.96
5054 7744 2.584835 TCACAGAAACATCTTGGGGG 57.415 50.000 0.00 0.00 0.00 5.40
5055 7745 1.780309 TCACAGAAACATCTTGGGGGT 59.220 47.619 0.00 0.00 0.00 4.95
5056 7746 2.176798 TCACAGAAACATCTTGGGGGTT 59.823 45.455 0.00 0.00 0.00 4.11
5057 7747 2.297033 CACAGAAACATCTTGGGGGTTG 59.703 50.000 0.00 0.00 0.00 3.77
5058 7748 1.895131 CAGAAACATCTTGGGGGTTGG 59.105 52.381 0.00 0.00 0.00 3.77
5059 7749 1.786441 AGAAACATCTTGGGGGTTGGA 59.214 47.619 0.00 0.00 0.00 3.53
5060 7750 2.171003 GAAACATCTTGGGGGTTGGAG 58.829 52.381 0.00 0.00 0.00 3.86
5061 7751 0.409484 AACATCTTGGGGGTTGGAGG 59.591 55.000 0.00 0.00 0.00 4.30
5062 7752 0.477597 ACATCTTGGGGGTTGGAGGA 60.478 55.000 0.00 0.00 0.00 3.71
5063 7753 0.257039 CATCTTGGGGGTTGGAGGAG 59.743 60.000 0.00 0.00 0.00 3.69
5064 7754 0.178831 ATCTTGGGGGTTGGAGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
5065 7755 0.840722 TCTTGGGGGTTGGAGGAGTC 60.841 60.000 0.00 0.00 0.00 3.36
5066 7756 1.073319 TTGGGGGTTGGAGGAGTCA 60.073 57.895 0.00 0.00 0.00 3.41
5067 7757 1.423794 TTGGGGGTTGGAGGAGTCAC 61.424 60.000 0.00 0.00 0.00 3.67
5068 7758 2.603652 GGGGGTTGGAGGAGTCACC 61.604 68.421 0.00 0.00 39.35 4.02
5069 7759 2.603652 GGGGTTGGAGGAGTCACCC 61.604 68.421 7.02 7.02 40.05 4.61
5070 7760 2.663196 GGTTGGAGGAGTCACCCG 59.337 66.667 0.00 0.00 40.05 5.28
5071 7761 2.663196 GTTGGAGGAGTCACCCGG 59.337 66.667 0.00 0.00 40.05 5.73
5072 7762 2.203182 TTGGAGGAGTCACCCGGT 59.797 61.111 0.00 0.00 40.05 5.28
5073 7763 1.911766 TTGGAGGAGTCACCCGGTC 60.912 63.158 0.00 0.00 40.05 4.79
5074 7764 2.037527 GGAGGAGTCACCCGGTCT 59.962 66.667 0.00 0.00 40.05 3.85
5075 7765 2.352032 GGAGGAGTCACCCGGTCTG 61.352 68.421 0.00 0.00 40.05 3.51
5076 7766 2.997897 AGGAGTCACCCGGTCTGC 60.998 66.667 0.00 0.00 40.05 4.26
5077 7767 3.311110 GGAGTCACCCGGTCTGCA 61.311 66.667 0.00 0.00 0.00 4.41
5078 7768 2.262915 GAGTCACCCGGTCTGCAG 59.737 66.667 7.63 7.63 0.00 4.41
5079 7769 3.302347 GAGTCACCCGGTCTGCAGG 62.302 68.421 15.13 0.00 0.00 4.85
5080 7770 3.626924 GTCACCCGGTCTGCAGGT 61.627 66.667 15.13 0.32 0.00 4.00
5083 7773 3.314331 ACCCGGTCTGCAGGTGAG 61.314 66.667 15.13 3.20 30.97 3.51
5084 7774 3.314331 CCCGGTCTGCAGGTGAGT 61.314 66.667 15.13 0.00 0.00 3.41
5085 7775 2.743718 CCGGTCTGCAGGTGAGTT 59.256 61.111 15.13 0.00 0.00 3.01
5086 7776 1.071471 CCGGTCTGCAGGTGAGTTT 59.929 57.895 15.13 0.00 0.00 2.66
5087 7777 0.951040 CCGGTCTGCAGGTGAGTTTC 60.951 60.000 15.13 0.00 0.00 2.78
5088 7778 0.951040 CGGTCTGCAGGTGAGTTTCC 60.951 60.000 15.13 3.44 0.00 3.13
5089 7779 0.398318 GGTCTGCAGGTGAGTTTCCT 59.602 55.000 15.13 0.00 35.45 3.36
5090 7780 1.623811 GGTCTGCAGGTGAGTTTCCTA 59.376 52.381 15.13 0.00 33.54 2.94
5091 7781 2.038557 GGTCTGCAGGTGAGTTTCCTAA 59.961 50.000 15.13 0.00 33.54 2.69
5092 7782 3.496160 GGTCTGCAGGTGAGTTTCCTAAA 60.496 47.826 15.13 0.00 33.54 1.85
5093 7783 3.748568 GTCTGCAGGTGAGTTTCCTAAAG 59.251 47.826 15.13 0.00 33.54 1.85
5094 7784 3.391296 TCTGCAGGTGAGTTTCCTAAAGT 59.609 43.478 15.13 0.00 33.54 2.66
5095 7785 3.740115 TGCAGGTGAGTTTCCTAAAGTC 58.260 45.455 1.14 1.14 40.47 3.01
5096 7786 3.391296 TGCAGGTGAGTTTCCTAAAGTCT 59.609 43.478 8.30 0.00 40.65 3.24
5097 7787 3.748568 GCAGGTGAGTTTCCTAAAGTCTG 59.251 47.826 8.30 0.00 40.65 3.51
5098 7788 4.503296 GCAGGTGAGTTTCCTAAAGTCTGA 60.503 45.833 8.30 0.00 40.65 3.27
5099 7789 5.611374 CAGGTGAGTTTCCTAAAGTCTGAA 58.389 41.667 8.30 0.00 40.65 3.02
5100 7790 5.467063 CAGGTGAGTTTCCTAAAGTCTGAAC 59.533 44.000 8.30 0.26 40.65 3.18
5101 7791 4.755629 GGTGAGTTTCCTAAAGTCTGAACC 59.244 45.833 8.30 4.78 40.65 3.62
5114 7804 0.607217 CTGAACCAGTGCCATGCTGA 60.607 55.000 0.83 0.00 36.12 4.26
5162 7854 8.891367 CTTCCGAGCATCATATATGAAAAATG 57.109 34.615 19.03 13.39 40.69 2.32
5163 7855 7.984422 TCCGAGCATCATATATGAAAAATGT 57.016 32.000 19.03 0.00 40.69 2.71
5164 7856 8.394971 TCCGAGCATCATATATGAAAAATGTT 57.605 30.769 19.03 10.71 40.69 2.71
5165 7857 9.500785 TCCGAGCATCATATATGAAAAATGTTA 57.499 29.630 19.03 0.36 40.69 2.41
5211 7903 8.486383 TCAGCGTAATTTTCAAAAATGTTGATG 58.514 29.630 1.67 4.35 38.53 3.07
5215 7907 8.229137 CGTAATTTTCAAAAATGTTGATGGCAT 58.771 29.630 0.00 0.00 38.53 4.40
5222 7914 9.727627 TTCAAAAATGTTGATGGCATTAAAAAC 57.272 25.926 6.23 7.60 35.73 2.43
5224 7916 9.680315 CAAAAATGTTGATGGCATTAAAAACAT 57.320 25.926 18.20 18.20 39.30 2.71
5225 7917 9.680315 AAAAATGTTGATGGCATTAAAAACATG 57.320 25.926 21.70 0.00 38.05 3.21
5251 7943 5.211454 TGTGACATTTAAAAGATGTGCACG 58.789 37.500 13.13 0.00 37.83 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
582 600 7.865530 TTTTAGGGTATGTAGATGGCATCTA 57.134 36.000 28.78 28.78 40.76 1.98
583 601 6.763715 TTTTAGGGTATGTAGATGGCATCT 57.236 37.500 30.89 30.89 43.33 2.90
606 624 5.246656 ACCATCATGTGTGGATGACATTTTT 59.753 36.000 21.36 0.00 43.80 1.94
607 625 4.773674 ACCATCATGTGTGGATGACATTTT 59.226 37.500 21.36 0.00 43.80 1.82
608 626 4.346730 ACCATCATGTGTGGATGACATTT 58.653 39.130 21.36 0.08 43.80 2.32
609 627 3.972133 ACCATCATGTGTGGATGACATT 58.028 40.909 21.36 0.67 43.80 2.71
610 628 3.657398 ACCATCATGTGTGGATGACAT 57.343 42.857 21.36 0.00 43.80 3.06
611 629 3.438216 AACCATCATGTGTGGATGACA 57.562 42.857 21.36 0.00 43.80 3.58
612 630 3.507233 ACAAACCATCATGTGTGGATGAC 59.493 43.478 21.36 0.00 43.80 3.06
613 631 3.506844 CACAAACCATCATGTGTGGATGA 59.493 43.478 21.36 0.00 43.80 2.92
614 632 3.506844 TCACAAACCATCATGTGTGGATG 59.493 43.478 21.36 19.62 45.52 3.51
615 633 3.765381 TCACAAACCATCATGTGTGGAT 58.235 40.909 21.36 10.67 45.52 3.41
616 634 3.220674 TCACAAACCATCATGTGTGGA 57.779 42.857 21.36 4.25 45.52 4.02
618 636 3.247442 GCATCACAAACCATCATGTGTG 58.753 45.455 5.71 5.71 45.52 3.82
619 637 2.892215 TGCATCACAAACCATCATGTGT 59.108 40.909 5.88 0.00 45.52 3.72
623 641 5.918426 TTGTATGCATCACAAACCATCAT 57.082 34.783 0.19 0.00 33.11 2.45
625 643 7.599630 AAATTTGTATGCATCACAAACCATC 57.400 32.000 24.15 1.78 45.74 3.51
626 644 9.499479 TTTAAATTTGTATGCATCACAAACCAT 57.501 25.926 24.15 18.36 45.74 3.55
627 645 8.893219 TTTAAATTTGTATGCATCACAAACCA 57.107 26.923 24.15 15.26 45.74 3.67
628 646 9.810231 CTTTTAAATTTGTATGCATCACAAACC 57.190 29.630 24.15 2.68 45.74 3.27
629 647 9.316859 GCTTTTAAATTTGTATGCATCACAAAC 57.683 29.630 24.15 11.49 45.74 2.93
630 648 8.219769 CGCTTTTAAATTTGTATGCATCACAAA 58.780 29.630 24.01 24.01 46.64 2.83
631 649 7.596621 TCGCTTTTAAATTTGTATGCATCACAA 59.403 29.630 0.19 9.84 34.18 3.33
632 650 7.087007 TCGCTTTTAAATTTGTATGCATCACA 58.913 30.769 0.19 3.58 0.00 3.58
634 652 7.534282 TCTCGCTTTTAAATTTGTATGCATCA 58.466 30.769 0.19 0.00 0.00 3.07
635 653 7.969387 TCTCGCTTTTAAATTTGTATGCATC 57.031 32.000 0.19 0.00 0.00 3.91
636 654 7.009540 GCTTCTCGCTTTTAAATTTGTATGCAT 59.990 33.333 3.79 3.79 35.14 3.96
637 655 6.307800 GCTTCTCGCTTTTAAATTTGTATGCA 59.692 34.615 0.00 0.00 35.14 3.96
638 656 6.307800 TGCTTCTCGCTTTTAAATTTGTATGC 59.692 34.615 0.00 2.14 40.11 3.14
639 657 7.750458 TCTGCTTCTCGCTTTTAAATTTGTATG 59.250 33.333 0.00 0.00 40.11 2.39
640 658 7.816640 TCTGCTTCTCGCTTTTAAATTTGTAT 58.183 30.769 0.00 0.00 40.11 2.29
641 659 7.197071 TCTGCTTCTCGCTTTTAAATTTGTA 57.803 32.000 0.00 0.00 40.11 2.41
642 660 6.072112 TCTGCTTCTCGCTTTTAAATTTGT 57.928 33.333 0.00 0.00 40.11 2.83
643 661 6.991485 TTCTGCTTCTCGCTTTTAAATTTG 57.009 33.333 0.00 0.00 40.11 2.32
644 662 7.425606 TCTTTCTGCTTCTCGCTTTTAAATTT 58.574 30.769 0.00 0.00 40.11 1.82
645 663 6.970484 TCTTTCTGCTTCTCGCTTTTAAATT 58.030 32.000 0.00 0.00 40.11 1.82
646 664 6.560253 TCTTTCTGCTTCTCGCTTTTAAAT 57.440 33.333 0.00 0.00 40.11 1.40
647 665 6.371809 TTCTTTCTGCTTCTCGCTTTTAAA 57.628 33.333 0.00 0.00 40.11 1.52
648 666 6.017109 ACATTCTTTCTGCTTCTCGCTTTTAA 60.017 34.615 0.00 0.00 40.11 1.52
650 668 4.276926 ACATTCTTTCTGCTTCTCGCTTTT 59.723 37.500 0.00 0.00 40.11 2.27
651 669 3.817647 ACATTCTTTCTGCTTCTCGCTTT 59.182 39.130 0.00 0.00 40.11 3.51
652 670 3.406764 ACATTCTTTCTGCTTCTCGCTT 58.593 40.909 0.00 0.00 40.11 4.68
653 671 3.051081 ACATTCTTTCTGCTTCTCGCT 57.949 42.857 0.00 0.00 40.11 4.93
654 672 3.820777 AACATTCTTTCTGCTTCTCGC 57.179 42.857 0.00 0.00 39.77 5.03
656 674 7.369803 TGTCATAACATTCTTTCTGCTTCTC 57.630 36.000 0.00 0.00 0.00 2.87
657 675 7.750229 TTGTCATAACATTCTTTCTGCTTCT 57.250 32.000 0.00 0.00 34.73 2.85
659 677 8.579006 TGATTTGTCATAACATTCTTTCTGCTT 58.421 29.630 0.00 0.00 34.73 3.91
660 678 8.114331 TGATTTGTCATAACATTCTTTCTGCT 57.886 30.769 0.00 0.00 34.73 4.24
661 679 8.025445 ACTGATTTGTCATAACATTCTTTCTGC 58.975 33.333 0.00 0.00 34.73 4.26
663 681 9.071276 ACACTGATTTGTCATAACATTCTTTCT 57.929 29.630 0.00 0.00 34.73 2.52
709 727 7.672240 ACAAAACCCTAGAAAAACTGTCAAAA 58.328 30.769 0.00 0.00 0.00 2.44
710 728 7.234661 ACAAAACCCTAGAAAAACTGTCAAA 57.765 32.000 0.00 0.00 0.00 2.69
712 730 6.844097 AACAAAACCCTAGAAAAACTGTCA 57.156 33.333 0.00 0.00 0.00 3.58
713 731 7.062956 CACAAACAAAACCCTAGAAAAACTGTC 59.937 37.037 0.00 0.00 0.00 3.51
714 732 6.871492 CACAAACAAAACCCTAGAAAAACTGT 59.129 34.615 0.00 0.00 0.00 3.55
715 733 6.183360 GCACAAACAAAACCCTAGAAAAACTG 60.183 38.462 0.00 0.00 0.00 3.16
716 734 5.872617 GCACAAACAAAACCCTAGAAAAACT 59.127 36.000 0.00 0.00 0.00 2.66
718 736 5.794894 TGCACAAACAAAACCCTAGAAAAA 58.205 33.333 0.00 0.00 0.00 1.94
719 737 5.407407 TGCACAAACAAAACCCTAGAAAA 57.593 34.783 0.00 0.00 0.00 2.29
720 738 5.407407 TTGCACAAACAAAACCCTAGAAA 57.593 34.783 0.00 0.00 0.00 2.52
721 739 5.606348 ATTGCACAAACAAAACCCTAGAA 57.394 34.783 0.00 0.00 32.27 2.10
722 740 5.606348 AATTGCACAAACAAAACCCTAGA 57.394 34.783 0.00 0.00 32.27 2.43
723 741 6.314896 TCAAAATTGCACAAACAAAACCCTAG 59.685 34.615 0.00 0.00 32.27 3.02
724 742 6.173339 TCAAAATTGCACAAACAAAACCCTA 58.827 32.000 0.00 0.00 32.27 3.53
728 746 5.106357 ACCCTCAAAATTGCACAAACAAAAC 60.106 36.000 0.00 0.00 32.27 2.43
729 747 5.006386 ACCCTCAAAATTGCACAAACAAAA 58.994 33.333 0.00 0.00 32.27 2.44
730 748 4.583871 ACCCTCAAAATTGCACAAACAAA 58.416 34.783 0.00 0.00 32.27 2.83
735 753 4.081198 AGACAAACCCTCAAAATTGCACAA 60.081 37.500 0.00 0.00 0.00 3.33
736 754 3.450457 AGACAAACCCTCAAAATTGCACA 59.550 39.130 0.00 0.00 0.00 4.57
737 755 4.058721 AGACAAACCCTCAAAATTGCAC 57.941 40.909 0.00 0.00 0.00 4.57
738 756 4.751767 AAGACAAACCCTCAAAATTGCA 57.248 36.364 0.00 0.00 0.00 4.08
739 757 5.584251 TGAAAAGACAAACCCTCAAAATTGC 59.416 36.000 0.00 0.00 0.00 3.56
740 758 6.593382 TGTGAAAAGACAAACCCTCAAAATTG 59.407 34.615 0.00 0.00 0.00 2.32
741 759 6.706295 TGTGAAAAGACAAACCCTCAAAATT 58.294 32.000 0.00 0.00 0.00 1.82
743 761 5.730296 TGTGAAAAGACAAACCCTCAAAA 57.270 34.783 0.00 0.00 0.00 2.44
744 762 5.474825 GTTGTGAAAAGACAAACCCTCAAA 58.525 37.500 0.00 0.00 37.58 2.69
745 763 4.380023 CGTTGTGAAAAGACAAACCCTCAA 60.380 41.667 0.00 0.00 37.58 3.02
746 764 3.127895 CGTTGTGAAAAGACAAACCCTCA 59.872 43.478 0.00 0.00 37.58 3.86
747 765 3.488553 CCGTTGTGAAAAGACAAACCCTC 60.489 47.826 0.00 0.00 37.58 4.30
748 766 2.425668 CCGTTGTGAAAAGACAAACCCT 59.574 45.455 0.00 0.00 37.58 4.34
749 767 2.804647 CCGTTGTGAAAAGACAAACCC 58.195 47.619 0.00 0.00 37.58 4.11
750 768 2.190161 GCCGTTGTGAAAAGACAAACC 58.810 47.619 0.00 0.00 37.58 3.27
752 770 2.229062 TGTGCCGTTGTGAAAAGACAAA 59.771 40.909 0.00 0.00 37.58 2.83
753 771 1.813178 TGTGCCGTTGTGAAAAGACAA 59.187 42.857 0.00 0.00 33.36 3.18
754 772 1.454201 TGTGCCGTTGTGAAAAGACA 58.546 45.000 0.00 0.00 0.00 3.41
755 773 2.774439 ATGTGCCGTTGTGAAAAGAC 57.226 45.000 0.00 0.00 0.00 3.01
756 774 2.034053 GGAATGTGCCGTTGTGAAAAGA 59.966 45.455 0.00 0.00 0.00 2.52
757 775 2.034558 AGGAATGTGCCGTTGTGAAAAG 59.965 45.455 0.00 0.00 0.00 2.27
758 776 2.028130 AGGAATGTGCCGTTGTGAAAA 58.972 42.857 0.00 0.00 0.00 2.29
759 777 1.686355 AGGAATGTGCCGTTGTGAAA 58.314 45.000 0.00 0.00 0.00 2.69
760 778 1.336440 CAAGGAATGTGCCGTTGTGAA 59.664 47.619 0.00 0.00 0.00 3.18
761 779 0.950836 CAAGGAATGTGCCGTTGTGA 59.049 50.000 0.00 0.00 0.00 3.58
763 781 1.178534 CCCAAGGAATGTGCCGTTGT 61.179 55.000 0.00 0.00 0.00 3.32
765 783 2.275380 GCCCAAGGAATGTGCCGTT 61.275 57.895 0.00 0.00 0.00 4.44
801 819 4.377897 GACGGACAGAGAAAAGGAGAAAA 58.622 43.478 0.00 0.00 0.00 2.29
813 833 3.827898 GGAGCCGGACGGACAGAG 61.828 72.222 15.99 0.00 37.50 3.35
840 860 4.814234 GGGTGGTTTGAAACTTTGAATTCC 59.186 41.667 8.09 0.40 0.00 3.01
841 861 4.814234 GGGGTGGTTTGAAACTTTGAATTC 59.186 41.667 8.09 0.00 0.00 2.17
843 863 3.181470 CGGGGTGGTTTGAAACTTTGAAT 60.181 43.478 8.09 0.00 0.00 2.57
844 864 2.166664 CGGGGTGGTTTGAAACTTTGAA 59.833 45.455 8.09 0.00 0.00 2.69
848 868 1.396607 GGCGGGGTGGTTTGAAACTT 61.397 55.000 8.09 0.00 0.00 2.66
849 869 1.830847 GGCGGGGTGGTTTGAAACT 60.831 57.895 8.09 0.00 0.00 2.66
850 870 2.732016 GGCGGGGTGGTTTGAAAC 59.268 61.111 0.00 0.00 0.00 2.78
872 892 1.656095 GTGTCAATCAGTAGCACTCGC 59.344 52.381 0.00 0.00 38.99 5.03
874 894 2.094700 TCCGTGTCAATCAGTAGCACTC 60.095 50.000 0.00 0.00 0.00 3.51
875 895 1.893137 TCCGTGTCAATCAGTAGCACT 59.107 47.619 0.00 0.00 0.00 4.40
876 896 2.363788 TCCGTGTCAATCAGTAGCAC 57.636 50.000 0.00 0.00 0.00 4.40
877 897 3.064207 GTTTCCGTGTCAATCAGTAGCA 58.936 45.455 0.00 0.00 0.00 3.49
881 901 3.181465 ACTCTGTTTCCGTGTCAATCAGT 60.181 43.478 0.00 0.00 0.00 3.41
882 902 3.393800 ACTCTGTTTCCGTGTCAATCAG 58.606 45.455 0.00 0.00 0.00 2.90
883 903 3.469008 ACTCTGTTTCCGTGTCAATCA 57.531 42.857 0.00 0.00 0.00 2.57
884 904 3.807622 TCAACTCTGTTTCCGTGTCAATC 59.192 43.478 0.00 0.00 0.00 2.67
886 906 3.254470 TCAACTCTGTTTCCGTGTCAA 57.746 42.857 0.00 0.00 0.00 3.18
894 914 4.024048 TGGCTTCGAAATCAACTCTGTTTC 60.024 41.667 0.00 0.00 0.00 2.78
904 924 1.069296 CGCAGTTTGGCTTCGAAATCA 60.069 47.619 0.00 0.00 35.93 2.57
916 936 0.882042 ACACAGAGGAGCGCAGTTTG 60.882 55.000 11.47 3.62 0.00 2.93
1045 1085 0.105401 GGGAGAGGGAAGGTAGGGAG 60.105 65.000 0.00 0.00 0.00 4.30
1055 1095 1.221909 TAGAGTGCAGGGGAGAGGGA 61.222 60.000 0.00 0.00 0.00 4.20
1074 1114 4.821805 CGGGTGGAGCATAATAAAATCAGT 59.178 41.667 0.00 0.00 0.00 3.41
1083 1123 0.182775 GGAACCGGGTGGAGCATAAT 59.817 55.000 6.32 0.00 39.21 1.28
1093 1133 1.079612 GAATCGAACGGAACCGGGT 60.080 57.895 17.44 0.00 44.69 5.28
1147 1211 3.717294 ATGGCCGTGAGACCACCC 61.717 66.667 0.00 0.00 39.19 4.61
1148 1212 2.436646 CATGGCCGTGAGACCACC 60.437 66.667 21.08 0.00 39.19 4.61
1151 1215 0.815615 GAATCCATGGCCGTGAGACC 60.816 60.000 27.13 12.63 0.00 3.85
1156 1220 1.077501 AGGTGAATCCATGGCCGTG 60.078 57.895 18.73 18.73 39.02 4.94
1157 1221 1.224592 GAGGTGAATCCATGGCCGT 59.775 57.895 6.96 0.00 39.02 5.68
1197 1276 3.939837 CTCCTGCACCGCACACGAT 62.940 63.158 0.00 0.00 43.93 3.73
1200 1279 4.314440 TCCTCCTGCACCGCACAC 62.314 66.667 0.00 0.00 33.79 3.82
1232 1311 3.364249 CTCGTCGTCCTCGTCGTGG 62.364 68.421 7.02 7.02 45.27 4.94
1233 1312 2.096030 CTCGTCGTCCTCGTCGTG 59.904 66.667 7.05 0.00 45.27 4.35
1238 1317 0.042361 CGTATTCCTCGTCGTCCTCG 60.042 60.000 0.00 0.00 38.55 4.63
1239 1318 0.316854 GCGTATTCCTCGTCGTCCTC 60.317 60.000 0.00 0.00 0.00 3.71
1240 1319 1.726265 GCGTATTCCTCGTCGTCCT 59.274 57.895 0.00 0.00 0.00 3.85
1241 1320 1.653533 CGCGTATTCCTCGTCGTCC 60.654 63.158 0.00 0.00 0.00 4.79
1253 1335 2.582498 GCTTCCAGCGTCGCGTAT 60.582 61.111 12.30 0.00 0.00 3.06
1263 1345 2.806856 GCATCACGAGCGCTTCCAG 61.807 63.158 13.26 6.47 0.00 3.86
1269 1351 4.219846 CTGCTGCATCACGAGCGC 62.220 66.667 1.31 0.00 38.09 5.92
1275 1357 3.138798 CTGCCCCTGCTGCATCAC 61.139 66.667 1.31 0.00 38.22 3.06
1339 1421 1.133181 TCTCATCCCAACCTGCCACA 61.133 55.000 0.00 0.00 0.00 4.17
1340 1422 0.393537 CTCTCATCCCAACCTGCCAC 60.394 60.000 0.00 0.00 0.00 5.01
1360 1442 2.031870 GGTGAAAGAAAAGCAGGTGGT 58.968 47.619 0.00 0.00 0.00 4.16
1369 1451 0.941542 CACGCGAGGGTGAAAGAAAA 59.058 50.000 15.93 0.00 40.38 2.29
1445 1530 3.767131 TGTAGTGGACATTCCTCGATTCA 59.233 43.478 0.00 0.00 37.46 2.57
1450 1535 2.609459 GCATTGTAGTGGACATTCCTCG 59.391 50.000 0.00 0.00 38.07 4.63
1457 1542 1.886222 GCTTGGGCATTGTAGTGGACA 60.886 52.381 0.00 0.00 38.54 4.02
1458 1543 0.811281 GCTTGGGCATTGTAGTGGAC 59.189 55.000 0.00 0.00 38.54 4.02
1542 1627 1.501582 GCATCCCAGACCTCCTTAGT 58.498 55.000 0.00 0.00 0.00 2.24
1559 1644 1.302949 GTGCATAACCTGGAGGGCA 59.697 57.895 0.00 1.64 40.27 5.36
1613 1698 0.829333 TCATCTTCTCCCTCAGCTGC 59.171 55.000 9.47 0.00 0.00 5.25
1675 3701 0.522076 CAAATTCTCGAGCCTTGCGC 60.522 55.000 7.81 0.00 37.98 6.09
1676 3702 0.097674 CCAAATTCTCGAGCCTTGCG 59.902 55.000 7.81 2.20 0.00 4.85
1698 3724 3.144657 TCCAAGCTGCTTCATCTCAAA 57.855 42.857 12.82 0.00 0.00 2.69
1711 3737 0.392193 CACCTCTTCGCATCCAAGCT 60.392 55.000 0.00 0.00 0.00 3.74
1712 3738 0.391661 TCACCTCTTCGCATCCAAGC 60.392 55.000 0.00 0.00 0.00 4.01
1744 3770 0.247736 ACGAAGCATCTCCCTCACAC 59.752 55.000 0.00 0.00 0.00 3.82
1785 3811 1.697432 ACGAATGAGGGTCACAAAGGA 59.303 47.619 0.00 0.00 0.00 3.36
1797 3823 1.927174 CTTACGCCCTTCACGAATGAG 59.073 52.381 0.00 0.00 35.83 2.90
1808 3834 2.289257 GGTGTGTTCTAACTTACGCCCT 60.289 50.000 5.14 0.00 37.66 5.19
1813 3839 3.256631 TCGAGGGGTGTGTTCTAACTTAC 59.743 47.826 0.00 0.00 0.00 2.34
1817 3843 1.891150 TCTCGAGGGGTGTGTTCTAAC 59.109 52.381 13.56 0.00 0.00 2.34
1825 3854 1.608717 GAGCACATCTCGAGGGGTGT 61.609 60.000 26.81 19.87 33.88 4.16
1834 3863 3.876274 TGTAGACTTGGAGCACATCTC 57.124 47.619 0.00 0.00 41.15 2.75
1835 3864 4.833478 ATTGTAGACTTGGAGCACATCT 57.167 40.909 0.00 0.00 0.00 2.90
1856 3894 6.017687 CGATTCTGGATTGTTCTTGCATCATA 60.018 38.462 0.00 0.00 0.00 2.15
1895 3943 2.147387 ACTGTCCACCTTCGCCCTT 61.147 57.895 0.00 0.00 0.00 3.95
1912 3960 2.737376 GCTCGGTTCGGGTGACAC 60.737 66.667 0.00 0.00 0.00 3.67
1919 3967 3.136123 TAGTCGGGCTCGGTTCGG 61.136 66.667 5.94 0.00 36.95 4.30
1922 3970 1.751927 ATCGTAGTCGGGCTCGGTT 60.752 57.895 5.94 0.00 37.69 4.44
1924 3972 1.721664 TTCATCGTAGTCGGGCTCGG 61.722 60.000 5.94 0.00 37.69 4.63
2063 4111 3.988379 TTTGCTTCATCCACACAAGAC 57.012 42.857 0.00 0.00 0.00 3.01
2224 4275 9.830975 ACTTACCAACTGCTTCATTAAATTTTT 57.169 25.926 0.00 0.00 0.00 1.94
2270 4322 7.383572 CCTAAGACGAAGAAGTTCATATCCATG 59.616 40.741 5.50 0.00 32.36 3.66
2328 4380 3.119531 TCATTAGCCAAATTGTTGAGCCG 60.120 43.478 0.00 0.00 36.83 5.52
2345 4397 4.080356 CACCCAAGACCCTTCATCTCATTA 60.080 45.833 0.00 0.00 0.00 1.90
2442 4494 3.243839 GGCTTCACATGCTTGAGGAAAAA 60.244 43.478 6.60 0.00 0.00 1.94
2452 4504 3.754965 TCAAAGTTAGGCTTCACATGCT 58.245 40.909 0.00 0.00 36.17 3.79
2453 4505 4.022849 AGTTCAAAGTTAGGCTTCACATGC 60.023 41.667 0.00 0.00 36.17 4.06
2458 4510 6.932960 GGTTAGTAGTTCAAAGTTAGGCTTCA 59.067 38.462 0.00 0.00 36.17 3.02
2486 4538 0.892755 ATGTTGCAAGCACATCCTGG 59.107 50.000 0.00 0.00 0.00 4.45
2566 4618 2.555757 GCATTGACCTTCTTGCTTGAGT 59.444 45.455 0.00 0.00 32.41 3.41
2576 4628 1.538047 TCAAGGCAGCATTGACCTTC 58.462 50.000 18.39 0.00 38.16 3.46
2618 4670 5.088068 TCGTTTTCATCATCGCTTGATTTG 58.912 37.500 0.00 0.00 42.62 2.32
2619 4671 5.295431 TCGTTTTCATCATCGCTTGATTT 57.705 34.783 0.00 0.00 42.62 2.17
2642 4694 6.262496 GCATTTCCTCTTGATCTTGATCATGA 59.738 38.462 20.51 20.51 34.75 3.07
2666 4718 4.151157 GTCAATTCTTGCATTCCTTGTTGC 59.849 41.667 0.00 0.00 39.33 4.17
2705 4757 6.806388 TTCGTTCCAAGAAACCCTTTATAC 57.194 37.500 0.00 0.00 31.42 1.47
2746 4799 8.324306 TCATCTTGGACTTGTCAGAGAAATTAT 58.676 33.333 3.08 0.00 0.00 1.28
2778 4831 7.446319 TCCACATTGATAGCAATATCTCTTTGG 59.554 37.037 5.78 5.05 42.66 3.28
2804 4857 5.258841 TCAGCACTGAAATGATTGGAATCT 58.741 37.500 0.00 0.00 36.53 2.40
2821 4874 3.935828 GTCCTCCTTAGAACAATCAGCAC 59.064 47.826 0.00 0.00 0.00 4.40
2832 4885 6.315714 TCTCTTCTTTCTTGTCCTCCTTAGA 58.684 40.000 0.00 0.00 0.00 2.10
2858 4914 5.241403 TCCTCTTGTATTTGCTTTCCTCA 57.759 39.130 0.00 0.00 0.00 3.86
2862 4918 6.084326 TGGTTTCCTCTTGTATTTGCTTTC 57.916 37.500 0.00 0.00 0.00 2.62
2864 4920 6.570378 CGAATGGTTTCCTCTTGTATTTGCTT 60.570 38.462 0.00 0.00 0.00 3.91
2907 4963 1.492133 TTCTCCCCCTCTGGCTTGTG 61.492 60.000 0.00 0.00 0.00 3.33
2932 4988 6.300354 AGTACAAGATGAAACAAAGGAACG 57.700 37.500 0.00 0.00 0.00 3.95
2942 4998 6.647334 TGCAATGGAAAGTACAAGATGAAA 57.353 33.333 0.00 0.00 0.00 2.69
2986 5042 7.965655 CACCATTGTAACGCAGAACATTTTATA 59.034 33.333 0.00 0.00 0.00 0.98
2989 5045 4.981674 CACCATTGTAACGCAGAACATTTT 59.018 37.500 0.00 0.00 0.00 1.82
3010 5066 1.944676 GTGTCGGATCGGATCGCAC 60.945 63.158 11.62 14.83 0.00 5.34
3011 5067 2.411701 GTGTCGGATCGGATCGCA 59.588 61.111 11.62 7.90 0.00 5.10
3075 5171 2.208527 ACACCGGACACTTGTGTCT 58.791 52.632 26.43 10.19 38.83 3.41
3429 5594 1.277842 TCACATGCCGTTGTCCATACT 59.722 47.619 0.00 0.00 0.00 2.12
3457 5653 2.984471 GCAGAATGACAACAATGTGCAG 59.016 45.455 0.00 0.00 42.95 4.41
3544 5742 6.828492 TATGAACTGCATAACCGTTTGGTGG 61.828 44.000 0.00 0.00 42.49 4.61
3545 5743 4.155099 TATGAACTGCATAACCGTTTGGTG 59.845 41.667 0.00 0.00 42.49 4.17
3649 5863 7.324178 AGCAATCCTCCAATCTTATCGTATAC 58.676 38.462 0.00 0.00 0.00 1.47
3752 5967 2.692709 TCCACACCCCAATGAATGTT 57.307 45.000 0.00 0.00 0.00 2.71
3815 6032 7.123247 CCATGGTGATTTTCCAAGGGATATATC 59.877 40.741 2.57 3.96 39.34 1.63
3999 6378 0.976641 CACTACACTTCCAGAGCCCA 59.023 55.000 0.00 0.00 0.00 5.36
4011 6390 9.710900 TGATTAATGATCATACCATCACTACAC 57.289 33.333 9.04 0.00 39.83 2.90
4041 6420 7.319646 GCACCTGTTTCATATTCAACCAAATA 58.680 34.615 0.00 0.00 0.00 1.40
4085 6464 1.675552 CACTTTCCACTCCCGTGTTT 58.324 50.000 0.00 0.00 39.55 2.83
4155 6534 3.735514 GCGGAGTTCTCAGGTACTTCATC 60.736 52.174 2.24 0.00 34.60 2.92
4208 6623 0.321671 AGTAGTGTTGCTGTGCCGAT 59.678 50.000 0.00 0.00 0.00 4.18
4209 6624 0.599991 CAGTAGTGTTGCTGTGCCGA 60.600 55.000 0.00 0.00 32.96 5.54
4265 6723 4.320202 GCGTGCTTAAGATTTCCTCAACAA 60.320 41.667 6.67 0.00 0.00 2.83
4394 6885 3.740044 ATGAAACCAACGAGTTATGCG 57.260 42.857 0.00 0.00 0.00 4.73
4396 6887 8.196802 TCATAGAATGAAACCAACGAGTTATG 57.803 34.615 0.00 0.00 36.11 1.90
4425 6916 2.819595 CGCCGATGAACAGGGTGG 60.820 66.667 0.00 0.00 0.00 4.61
4426 6917 2.796483 TTCCGCCGATGAACAGGGTG 62.796 60.000 0.00 0.00 0.00 4.61
4428 6919 0.958382 TTTTCCGCCGATGAACAGGG 60.958 55.000 0.00 0.00 0.00 4.45
4554 7151 3.684305 TGGAACTACAAGTGCGAATGATG 59.316 43.478 0.00 0.00 0.00 3.07
4561 7158 2.218603 AGGTTTGGAACTACAAGTGCG 58.781 47.619 0.00 0.00 0.00 5.34
4582 7179 7.660112 TGCATCTTATACTGGGCAATTATTTG 58.340 34.615 0.00 0.00 35.85 2.32
4612 7209 1.376543 GATGATGCCGCCTGGATATG 58.623 55.000 0.00 0.00 37.49 1.78
4624 7221 3.308323 GTCTTTCACCTTCTCGATGATGC 59.692 47.826 0.00 0.00 0.00 3.91
4648 7245 5.708948 CAGAGTGGAAAGAGAGACTAACAG 58.291 45.833 0.00 0.00 0.00 3.16
4677 7274 9.314321 GAGTGGAAAGATCGATTATTCAAAGTA 57.686 33.333 19.49 4.49 0.00 2.24
4709 7306 7.650504 CACTTCAATTCTTCAGCAATGAAAGAA 59.349 33.333 7.85 7.85 0.00 2.52
4757 7438 5.351465 AGAAACATTCATACAACAGCTACCG 59.649 40.000 0.00 0.00 0.00 4.02
4815 7496 1.459209 GCCTGGCAATTAAAAACACGC 59.541 47.619 15.17 0.00 0.00 5.34
4882 7571 4.552166 ACAAGCAGAATTACACACACAC 57.448 40.909 0.00 0.00 0.00 3.82
4883 7572 6.052360 TCTTACAAGCAGAATTACACACACA 58.948 36.000 0.00 0.00 0.00 3.72
4885 7574 6.765989 ACTTCTTACAAGCAGAATTACACACA 59.234 34.615 0.00 0.00 29.78 3.72
4886 7575 7.072030 CACTTCTTACAAGCAGAATTACACAC 58.928 38.462 0.00 0.00 29.78 3.82
4887 7576 6.765989 ACACTTCTTACAAGCAGAATTACACA 59.234 34.615 0.00 0.00 29.78 3.72
4906 7595 7.306807 CGTCCATGATGTATTGATGTACACTTC 60.307 40.741 0.00 0.00 37.40 3.01
4907 7596 6.479990 CGTCCATGATGTATTGATGTACACTT 59.520 38.462 0.00 0.00 37.40 3.16
4908 7597 5.985530 CGTCCATGATGTATTGATGTACACT 59.014 40.000 0.00 0.00 37.40 3.55
4909 7598 5.753438 ACGTCCATGATGTATTGATGTACAC 59.247 40.000 0.00 0.00 37.40 2.90
4910 7599 5.752955 CACGTCCATGATGTATTGATGTACA 59.247 40.000 0.00 0.00 38.79 2.90
4911 7600 5.177511 CCACGTCCATGATGTATTGATGTAC 59.822 44.000 0.00 0.00 31.04 2.90
4912 7601 5.163353 ACCACGTCCATGATGTATTGATGTA 60.163 40.000 0.00 0.00 31.04 2.29
4913 7602 4.129380 CCACGTCCATGATGTATTGATGT 58.871 43.478 0.00 0.00 32.51 3.06
4914 7603 4.129380 ACCACGTCCATGATGTATTGATG 58.871 43.478 0.00 0.00 29.93 3.07
4926 7615 1.770294 AACACCAAAACCACGTCCAT 58.230 45.000 0.00 0.00 0.00 3.41
4932 7621 4.328712 CAGTAGCAAAAACACCAAAACCAC 59.671 41.667 0.00 0.00 0.00 4.16
4935 7624 4.180817 AGCAGTAGCAAAAACACCAAAAC 58.819 39.130 0.00 0.00 45.49 2.43
4941 7630 3.708563 TCCAAGCAGTAGCAAAAACAC 57.291 42.857 0.00 0.00 45.49 3.32
4959 7648 7.922811 GGAGATTATCAAAAACATCCAACATCC 59.077 37.037 0.00 0.00 0.00 3.51
4986 7675 9.887862 ACCCATAGAAAAATCCATAATCAAGAT 57.112 29.630 0.00 0.00 0.00 2.40
5006 7696 4.021192 ACCGTCTTTAGAAAACGACCCATA 60.021 41.667 0.00 0.00 38.65 2.74
5007 7697 3.244318 ACCGTCTTTAGAAAACGACCCAT 60.244 43.478 0.00 0.00 38.65 4.00
5008 7698 2.102925 ACCGTCTTTAGAAAACGACCCA 59.897 45.455 0.00 0.00 38.65 4.51
5033 7723 3.181418 ACCCCCAAGATGTTTCTGTGATT 60.181 43.478 0.00 0.00 30.72 2.57
5042 7732 0.409484 CCTCCAACCCCCAAGATGTT 59.591 55.000 0.00 0.00 0.00 2.71
5053 7743 2.663196 CGGGTGACTCCTCCAACC 59.337 66.667 0.00 0.00 38.02 3.77
5054 7744 2.168666 GACCGGGTGACTCCTCCAAC 62.169 65.000 3.30 0.00 36.25 3.77
5055 7745 1.911766 GACCGGGTGACTCCTCCAA 60.912 63.158 3.30 0.00 36.25 3.53
5056 7746 2.283676 GACCGGGTGACTCCTCCA 60.284 66.667 3.30 0.00 36.25 3.86
5057 7747 2.037527 AGACCGGGTGACTCCTCC 59.962 66.667 3.30 0.00 36.25 4.30
5058 7748 3.007973 GCAGACCGGGTGACTCCTC 62.008 68.421 3.30 0.00 36.25 3.71
5059 7749 2.997897 GCAGACCGGGTGACTCCT 60.998 66.667 3.30 0.00 36.25 3.69
5060 7750 3.302347 CTGCAGACCGGGTGACTCC 62.302 68.421 8.42 0.00 0.00 3.85
5061 7751 2.262915 CTGCAGACCGGGTGACTC 59.737 66.667 8.42 0.00 0.00 3.36
5062 7752 3.314331 CCTGCAGACCGGGTGACT 61.314 66.667 17.39 0.00 35.07 3.41
5067 7757 2.397413 AAACTCACCTGCAGACCGGG 62.397 60.000 17.39 5.23 46.17 5.73
5068 7758 0.951040 GAAACTCACCTGCAGACCGG 60.951 60.000 17.39 0.00 0.00 5.28
5069 7759 0.951040 GGAAACTCACCTGCAGACCG 60.951 60.000 17.39 0.15 0.00 4.79
5070 7760 0.398318 AGGAAACTCACCTGCAGACC 59.602 55.000 17.39 5.32 32.90 3.85
5071 7761 3.402628 TTAGGAAACTCACCTGCAGAC 57.597 47.619 17.39 0.00 43.67 3.51
5072 7762 3.391296 ACTTTAGGAAACTCACCTGCAGA 59.609 43.478 17.39 0.00 43.67 4.26
5073 7763 3.744660 ACTTTAGGAAACTCACCTGCAG 58.255 45.455 6.78 6.78 43.67 4.41
5074 7764 3.391296 AGACTTTAGGAAACTCACCTGCA 59.609 43.478 0.00 0.00 43.67 4.41
5075 7765 3.748568 CAGACTTTAGGAAACTCACCTGC 59.251 47.826 0.00 0.00 43.67 4.85
5076 7766 5.215252 TCAGACTTTAGGAAACTCACCTG 57.785 43.478 0.00 0.00 43.67 4.00
5077 7767 5.454897 GGTTCAGACTTTAGGAAACTCACCT 60.455 44.000 0.00 0.00 43.67 4.00
5078 7768 4.755629 GGTTCAGACTTTAGGAAACTCACC 59.244 45.833 0.00 0.00 43.67 4.02
5079 7769 5.365619 TGGTTCAGACTTTAGGAAACTCAC 58.634 41.667 0.00 0.00 43.67 3.51
5080 7770 5.130477 ACTGGTTCAGACTTTAGGAAACTCA 59.870 40.000 1.59 0.00 37.24 3.41
5081 7771 5.467063 CACTGGTTCAGACTTTAGGAAACTC 59.533 44.000 1.59 0.00 37.24 3.01
5082 7772 5.368989 CACTGGTTCAGACTTTAGGAAACT 58.631 41.667 1.59 0.00 38.76 2.66
5083 7773 4.023963 GCACTGGTTCAGACTTTAGGAAAC 60.024 45.833 1.59 0.00 35.18 2.78
5084 7774 4.134563 GCACTGGTTCAGACTTTAGGAAA 58.865 43.478 1.59 0.00 35.18 3.13
5085 7775 3.496160 GGCACTGGTTCAGACTTTAGGAA 60.496 47.826 1.59 0.00 35.18 3.36
5086 7776 2.038557 GGCACTGGTTCAGACTTTAGGA 59.961 50.000 1.59 0.00 35.18 2.94
5087 7777 2.224523 TGGCACTGGTTCAGACTTTAGG 60.225 50.000 1.59 0.00 35.18 2.69
5088 7778 3.126001 TGGCACTGGTTCAGACTTTAG 57.874 47.619 1.59 0.00 35.18 1.85
5089 7779 3.411446 CATGGCACTGGTTCAGACTTTA 58.589 45.455 1.59 0.00 35.18 1.85
5090 7780 2.233271 CATGGCACTGGTTCAGACTTT 58.767 47.619 1.59 0.00 35.18 2.66
5091 7781 1.901591 CATGGCACTGGTTCAGACTT 58.098 50.000 1.59 0.00 35.18 3.01
5092 7782 0.607489 GCATGGCACTGGTTCAGACT 60.607 55.000 1.59 0.00 35.18 3.24
5093 7783 0.607489 AGCATGGCACTGGTTCAGAC 60.607 55.000 1.59 0.00 35.18 3.51
5094 7784 0.607217 CAGCATGGCACTGGTTCAGA 60.607 55.000 1.59 0.00 35.18 3.27
5095 7785 0.607217 TCAGCATGGCACTGGTTCAG 60.607 55.000 5.40 0.00 36.16 3.02
5096 7786 0.890542 GTCAGCATGGCACTGGTTCA 60.891 55.000 5.40 0.00 43.01 3.18
5097 7787 1.878775 GTCAGCATGGCACTGGTTC 59.121 57.895 5.40 0.00 43.01 3.62
5098 7788 4.085876 GTCAGCATGGCACTGGTT 57.914 55.556 5.40 0.00 43.01 3.67
5159 7851 9.699703 ACAAACTTTTTACACTGTGTTAACATT 57.300 25.926 19.73 7.44 35.22 2.71
5160 7852 9.349145 GACAAACTTTTTACACTGTGTTAACAT 57.651 29.630 19.73 1.63 35.22 2.71
5161 7853 8.350722 TGACAAACTTTTTACACTGTGTTAACA 58.649 29.630 19.73 3.59 34.34 2.41
5162 7854 8.730970 TGACAAACTTTTTACACTGTGTTAAC 57.269 30.769 19.73 0.00 0.00 2.01
5163 7855 7.539366 GCTGACAAACTTTTTACACTGTGTTAA 59.461 33.333 19.73 13.53 0.00 2.01
5164 7856 7.024768 GCTGACAAACTTTTTACACTGTGTTA 58.975 34.615 19.73 7.21 0.00 2.41
5165 7857 5.861787 GCTGACAAACTTTTTACACTGTGTT 59.138 36.000 19.73 3.51 0.00 3.32
5166 7858 5.399013 GCTGACAAACTTTTTACACTGTGT 58.601 37.500 18.51 18.51 0.00 3.72
5167 7859 4.495472 CGCTGACAAACTTTTTACACTGTG 59.505 41.667 6.19 6.19 0.00 3.66
5168 7860 4.155280 ACGCTGACAAACTTTTTACACTGT 59.845 37.500 0.00 0.00 0.00 3.55
5211 7903 6.595772 TGTCACAAACATGTTTTTAATGCC 57.404 33.333 21.10 8.11 31.20 4.40
5224 7916 7.009999 GTGCACATCTTTTAAATGTCACAAACA 59.990 33.333 13.17 0.00 43.51 2.83
5225 7917 7.336975 GTGCACATCTTTTAAATGTCACAAAC 58.663 34.615 13.17 0.00 35.19 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.