Multiple sequence alignment - TraesCS1D01G320400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G320400 chr1D 100.000 2630 0 0 1 2630 414442310 414439681 0.000000e+00 4857.0
1 TraesCS1D01G320400 chr1D 91.802 1598 74 19 899 2469 414491999 414493566 0.000000e+00 2172.0
2 TraesCS1D01G320400 chr1D 89.936 944 69 10 1025 1952 451869704 451868771 0.000000e+00 1194.0
3 TraesCS1D01G320400 chr1D 95.012 401 14 5 499 899 86146993 86146599 2.500000e-175 625.0
4 TraesCS1D01G320400 chr1D 100.000 80 0 0 2881 2960 414439430 414439351 6.610000e-32 148.0
5 TraesCS1D01G320400 chr1D 93.103 87 6 0 412 498 414491922 414492008 8.610000e-26 128.0
6 TraesCS1D01G320400 chr1B 94.370 1723 75 8 899 2619 559332036 559330334 0.000000e+00 2625.0
7 TraesCS1D01G320400 chr1B 91.156 1583 96 14 899 2457 559341947 559343509 0.000000e+00 2108.0
8 TraesCS1D01G320400 chr1B 90.482 1597 110 11 899 2469 559569877 559571457 0.000000e+00 2069.0
9 TraesCS1D01G320400 chr1B 89.822 953 79 10 1025 1975 621576817 621575881 0.000000e+00 1206.0
10 TraesCS1D01G320400 chr1B 94.828 174 5 3 329 498 559332200 559332027 4.860000e-68 268.0
11 TraesCS1D01G320400 chr1A 92.902 1761 68 16 899 2628 511275879 511277613 0.000000e+00 2507.0
12 TraesCS1D01G320400 chr1A 94.585 1459 50 7 899 2333 511146987 511145534 0.000000e+00 2230.0
13 TraesCS1D01G320400 chr1A 91.149 1593 84 19 899 2469 511157899 511159456 0.000000e+00 2108.0
14 TraesCS1D01G320400 chr1A 89.223 965 77 13 1028 1975 546316498 546315544 0.000000e+00 1181.0
15 TraesCS1D01G320400 chr1A 89.074 540 36 5 1757 2275 511220186 511219649 0.000000e+00 649.0
16 TraesCS1D01G320400 chr1A 90.323 372 26 5 2264 2628 511219239 511218871 2.060000e-131 479.0
17 TraesCS1D01G320400 chr1A 94.444 288 14 1 2343 2630 511218584 511218299 2.710000e-120 442.0
18 TraesCS1D01G320400 chr1A 93.750 288 16 1 2343 2630 511277952 511278237 5.860000e-117 431.0
19 TraesCS1D01G320400 chr1A 95.122 246 7 1 2072 2317 511218822 511218582 1.660000e-102 383.0
20 TraesCS1D01G320400 chr1A 92.437 238 13 1 2080 2317 511277722 511277954 4.730000e-88 335.0
21 TraesCS1D01G320400 chr1A 88.446 251 27 1 1 249 367437033 367436783 4.790000e-78 302.0
22 TraesCS1D01G320400 chr1A 81.096 365 39 11 2105 2469 511307053 511307387 6.290000e-67 265.0
23 TraesCS1D01G320400 chr1A 85.714 266 14 7 2365 2630 511145541 511145300 2.930000e-65 259.0
24 TraesCS1D01G320400 chr1A 96.053 76 3 0 420 495 511157830 511157905 1.110000e-24 124.0
25 TraesCS1D01G320400 chr1A 98.214 56 1 0 379 434 511147070 511147015 6.750000e-17 99.0
26 TraesCS1D01G320400 chr1A 93.651 63 4 0 2898 2960 511145273 511145211 8.730000e-16 95.3
27 TraesCS1D01G320400 chr1A 97.297 37 1 0 462 498 511147014 511146978 2.460000e-06 63.9
28 TraesCS1D01G320400 chr3D 96.278 403 11 4 499 899 568020424 568020824 0.000000e+00 658.0
29 TraesCS1D01G320400 chr3D 95.556 405 13 5 498 900 588675020 588675421 0.000000e+00 643.0
30 TraesCS1D01G320400 chr5D 95.388 412 13 6 491 899 505896400 505896808 0.000000e+00 651.0
31 TraesCS1D01G320400 chr5D 87.550 249 20 8 1 249 339706690 339706927 8.080000e-71 278.0
32 TraesCS1D01G320400 chr5D 87.083 240 29 2 1 239 411789559 411789321 1.350000e-68 270.0
33 TraesCS1D01G320400 chr4D 95.782 403 15 2 498 900 374298839 374299239 0.000000e+00 649.0
34 TraesCS1D01G320400 chr6D 95.037 403 16 4 500 899 25652110 25651709 5.380000e-177 630.0
35 TraesCS1D01G320400 chr6D 86.111 252 32 3 1 249 38190732 38190481 4.860000e-68 268.0
36 TraesCS1D01G320400 chr7D 94.815 405 15 5 496 900 377026740 377026342 6.960000e-176 627.0
37 TraesCS1D01G320400 chr7D 94.802 404 16 4 498 899 460078854 460079254 2.500000e-175 625.0
38 TraesCS1D01G320400 chr7D 88.211 246 24 4 1 243 45839613 45839856 3.730000e-74 289.0
39 TraesCS1D01G320400 chrUn 94.132 409 19 5 500 906 276883340 276883745 4.190000e-173 617.0
40 TraesCS1D01G320400 chrUn 89.787 235 21 3 1 234 108254225 108253993 6.200000e-77 298.0
41 TraesCS1D01G320400 chr7A 87.295 244 26 5 1 241 545065928 545065687 1.050000e-69 274.0
42 TraesCS1D01G320400 chr7A 87.446 231 27 1 1 229 150237271 150237501 6.290000e-67 265.0
43 TraesCS1D01G320400 chr6A 85.992 257 33 3 1 256 502943187 502942933 3.760000e-69 272.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G320400 chr1D 414439351 414442310 2959 True 2502.50 4857 100.000000 1 2960 2 chr1D.!!$R3 2959
1 TraesCS1D01G320400 chr1D 451868771 451869704 933 True 1194.00 1194 89.936000 1025 1952 1 chr1D.!!$R2 927
2 TraesCS1D01G320400 chr1D 414491922 414493566 1644 False 1150.00 2172 92.452500 412 2469 2 chr1D.!!$F1 2057
3 TraesCS1D01G320400 chr1B 559341947 559343509 1562 False 2108.00 2108 91.156000 899 2457 1 chr1B.!!$F1 1558
4 TraesCS1D01G320400 chr1B 559569877 559571457 1580 False 2069.00 2069 90.482000 899 2469 1 chr1B.!!$F2 1570
5 TraesCS1D01G320400 chr1B 559330334 559332200 1866 True 1446.50 2625 94.599000 329 2619 2 chr1B.!!$R2 2290
6 TraesCS1D01G320400 chr1B 621575881 621576817 936 True 1206.00 1206 89.822000 1025 1975 1 chr1B.!!$R1 950
7 TraesCS1D01G320400 chr1A 546315544 546316498 954 True 1181.00 1181 89.223000 1028 1975 1 chr1A.!!$R2 947
8 TraesCS1D01G320400 chr1A 511157830 511159456 1626 False 1116.00 2108 93.601000 420 2469 2 chr1A.!!$F2 2049
9 TraesCS1D01G320400 chr1A 511275879 511278237 2358 False 1091.00 2507 93.029667 899 2630 3 chr1A.!!$F3 1731
10 TraesCS1D01G320400 chr1A 511145211 511147070 1859 True 549.44 2230 93.892200 379 2960 5 chr1A.!!$R3 2581
11 TraesCS1D01G320400 chr1A 511218299 511220186 1887 True 488.25 649 92.240750 1757 2630 4 chr1A.!!$R4 873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
746 751 0.03759 TTGCCACGCCTTACAGGAAT 59.962 50.0 0.0 0.0 37.67 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2431 4185 1.084289 GCACCGAAGTCGCCTATTTT 58.916 50.0 0.0 0.0 38.18 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.871686 ACTTCACAGCGAAAAAGATAAAATTT 57.128 26.923 0.00 0.00 31.71 1.82
26 27 9.959749 ACTTCACAGCGAAAAAGATAAAATTTA 57.040 25.926 0.00 0.00 31.71 1.40
53 54 8.777865 TTGCTATTATAGGTCACTATTCATGC 57.222 34.615 1.12 0.00 40.35 4.06
54 55 8.138928 TGCTATTATAGGTCACTATTCATGCT 57.861 34.615 1.12 0.00 40.35 3.79
55 56 9.255029 TGCTATTATAGGTCACTATTCATGCTA 57.745 33.333 1.12 0.00 40.35 3.49
61 62 6.949352 AGGTCACTATTCATGCTATTTTGG 57.051 37.500 0.00 0.00 0.00 3.28
62 63 5.300286 AGGTCACTATTCATGCTATTTTGGC 59.700 40.000 0.00 0.00 0.00 4.52
63 64 5.300286 GGTCACTATTCATGCTATTTTGGCT 59.700 40.000 0.00 0.00 0.00 4.75
64 65 6.486657 GGTCACTATTCATGCTATTTTGGCTA 59.513 38.462 0.00 0.00 0.00 3.93
65 66 7.013274 GGTCACTATTCATGCTATTTTGGCTAA 59.987 37.037 0.00 0.00 0.00 3.09
66 67 8.405531 GTCACTATTCATGCTATTTTGGCTAAA 58.594 33.333 0.00 0.00 0.00 1.85
67 68 8.965819 TCACTATTCATGCTATTTTGGCTAAAA 58.034 29.630 10.60 10.60 39.86 1.52
68 69 9.585099 CACTATTCATGCTATTTTGGCTAAAAA 57.415 29.630 12.25 6.22 41.88 1.94
130 131 5.394224 TTTTTGAAACTTTTCTCACGGGT 57.606 34.783 3.48 0.00 38.02 5.28
131 132 6.512342 TTTTTGAAACTTTTCTCACGGGTA 57.488 33.333 3.48 0.00 38.02 3.69
132 133 5.488645 TTTGAAACTTTTCTCACGGGTAC 57.511 39.130 3.48 0.00 38.02 3.34
133 134 4.139859 TGAAACTTTTCTCACGGGTACA 57.860 40.909 3.48 0.00 38.02 2.90
134 135 4.515361 TGAAACTTTTCTCACGGGTACAA 58.485 39.130 3.48 0.00 38.02 2.41
135 136 5.127491 TGAAACTTTTCTCACGGGTACAAT 58.873 37.500 3.48 0.00 38.02 2.71
136 137 5.008217 TGAAACTTTTCTCACGGGTACAATG 59.992 40.000 3.48 0.00 38.02 2.82
137 138 3.408634 ACTTTTCTCACGGGTACAATGG 58.591 45.455 0.00 0.00 0.00 3.16
138 139 3.071892 ACTTTTCTCACGGGTACAATGGA 59.928 43.478 0.00 0.00 0.00 3.41
139 140 3.773418 TTTCTCACGGGTACAATGGAA 57.227 42.857 0.00 0.00 0.00 3.53
140 141 3.328382 TTCTCACGGGTACAATGGAAG 57.672 47.619 0.00 0.00 0.00 3.46
141 142 1.553248 TCTCACGGGTACAATGGAAGG 59.447 52.381 0.00 0.00 0.00 3.46
142 143 1.278127 CTCACGGGTACAATGGAAGGT 59.722 52.381 0.00 0.00 0.00 3.50
143 144 1.002659 TCACGGGTACAATGGAAGGTG 59.997 52.381 0.00 0.00 0.00 4.00
144 145 1.002659 CACGGGTACAATGGAAGGTGA 59.997 52.381 0.00 0.00 0.00 4.02
145 146 1.700739 ACGGGTACAATGGAAGGTGAA 59.299 47.619 0.00 0.00 0.00 3.18
146 147 2.106857 ACGGGTACAATGGAAGGTGAAA 59.893 45.455 0.00 0.00 0.00 2.69
147 148 3.245122 ACGGGTACAATGGAAGGTGAAAT 60.245 43.478 0.00 0.00 0.00 2.17
148 149 3.761752 CGGGTACAATGGAAGGTGAAATT 59.238 43.478 0.00 0.00 0.00 1.82
149 150 4.219725 CGGGTACAATGGAAGGTGAAATTT 59.780 41.667 0.00 0.00 0.00 1.82
150 151 5.416326 CGGGTACAATGGAAGGTGAAATTTA 59.584 40.000 0.00 0.00 0.00 1.40
151 152 6.096282 CGGGTACAATGGAAGGTGAAATTTAT 59.904 38.462 0.00 0.00 0.00 1.40
152 153 7.363443 CGGGTACAATGGAAGGTGAAATTTATT 60.363 37.037 0.00 0.00 0.00 1.40
153 154 8.318412 GGGTACAATGGAAGGTGAAATTTATTT 58.682 33.333 0.00 0.00 0.00 1.40
154 155 9.366216 GGTACAATGGAAGGTGAAATTTATTTC 57.634 33.333 8.00 8.00 44.83 2.17
238 239 7.958053 GTACATATGTACCCATAGACCAAAC 57.042 40.000 28.48 7.21 43.73 2.93
239 240 5.607477 ACATATGTACCCATAGACCAAACG 58.393 41.667 6.56 0.00 36.99 3.60
240 241 5.129815 ACATATGTACCCATAGACCAAACGT 59.870 40.000 6.56 0.00 36.99 3.99
241 242 3.598019 TGTACCCATAGACCAAACGTC 57.402 47.619 0.00 0.00 42.32 4.34
242 243 2.234414 TGTACCCATAGACCAAACGTCC 59.766 50.000 0.00 0.00 43.08 4.79
243 244 0.248289 ACCCATAGACCAAACGTCCG 59.752 55.000 0.00 0.00 43.08 4.79
244 245 1.087771 CCCATAGACCAAACGTCCGC 61.088 60.000 0.00 0.00 43.08 5.54
245 246 1.418342 CCATAGACCAAACGTCCGCG 61.418 60.000 0.00 0.00 43.08 6.46
255 256 4.916412 CGTCCGCGTCCACTATAG 57.084 61.111 4.92 0.00 0.00 1.31
256 257 1.370172 CGTCCGCGTCCACTATAGC 60.370 63.158 4.92 0.00 0.00 2.97
260 261 3.126528 GCGTCCACTATAGCGGGT 58.873 61.111 6.96 0.00 0.00 5.28
261 262 1.440476 GCGTCCACTATAGCGGGTT 59.560 57.895 6.96 0.00 0.00 4.11
262 263 0.670162 GCGTCCACTATAGCGGGTTA 59.330 55.000 6.96 0.00 0.00 2.85
263 264 1.271656 GCGTCCACTATAGCGGGTTAT 59.728 52.381 6.96 0.00 0.00 1.89
264 265 2.288640 GCGTCCACTATAGCGGGTTATT 60.289 50.000 6.96 0.00 0.00 1.40
265 266 3.801293 GCGTCCACTATAGCGGGTTATTT 60.801 47.826 6.96 0.00 0.00 1.40
266 267 3.739300 CGTCCACTATAGCGGGTTATTTG 59.261 47.826 6.96 0.00 0.00 2.32
267 268 4.700700 GTCCACTATAGCGGGTTATTTGT 58.299 43.478 6.96 0.00 0.00 2.83
268 269 4.510340 GTCCACTATAGCGGGTTATTTGTG 59.490 45.833 6.96 0.00 0.00 3.33
269 270 4.406326 TCCACTATAGCGGGTTATTTGTGA 59.594 41.667 6.96 0.00 0.00 3.58
270 271 5.104859 TCCACTATAGCGGGTTATTTGTGAA 60.105 40.000 6.96 0.00 0.00 3.18
271 272 5.236478 CCACTATAGCGGGTTATTTGTGAAG 59.764 44.000 0.00 0.00 0.00 3.02
272 273 4.814771 ACTATAGCGGGTTATTTGTGAAGC 59.185 41.667 0.00 0.00 0.00 3.86
273 274 0.802494 AGCGGGTTATTTGTGAAGCG 59.198 50.000 0.00 0.00 0.00 4.68
274 275 0.179174 GCGGGTTATTTGTGAAGCGG 60.179 55.000 0.00 0.00 0.00 5.52
275 276 1.161843 CGGGTTATTTGTGAAGCGGT 58.838 50.000 0.00 0.00 0.00 5.68
276 277 1.129811 CGGGTTATTTGTGAAGCGGTC 59.870 52.381 0.00 0.00 0.00 4.79
277 278 2.156098 GGGTTATTTGTGAAGCGGTCA 58.844 47.619 0.00 0.00 0.00 4.02
278 279 2.752903 GGGTTATTTGTGAAGCGGTCAT 59.247 45.455 0.00 0.00 38.90 3.06
279 280 3.192633 GGGTTATTTGTGAAGCGGTCATT 59.807 43.478 0.00 0.00 38.90 2.57
280 281 4.321675 GGGTTATTTGTGAAGCGGTCATTT 60.322 41.667 0.00 0.00 38.90 2.32
281 282 5.106078 GGGTTATTTGTGAAGCGGTCATTTA 60.106 40.000 0.00 0.00 38.90 1.40
282 283 6.027749 GGTTATTTGTGAAGCGGTCATTTAG 58.972 40.000 0.00 0.00 38.90 1.85
283 284 3.552604 TTTGTGAAGCGGTCATTTAGC 57.447 42.857 0.00 0.00 38.90 3.09
284 285 2.177394 TGTGAAGCGGTCATTTAGCA 57.823 45.000 0.00 0.00 38.90 3.49
285 286 2.076100 TGTGAAGCGGTCATTTAGCAG 58.924 47.619 0.00 0.00 38.90 4.24
286 287 1.086696 TGAAGCGGTCATTTAGCAGC 58.913 50.000 0.00 0.00 0.00 5.25
287 288 1.086696 GAAGCGGTCATTTAGCAGCA 58.913 50.000 0.00 0.00 0.00 4.41
288 289 0.804989 AAGCGGTCATTTAGCAGCAC 59.195 50.000 0.00 0.00 0.00 4.40
289 290 1.026718 AGCGGTCATTTAGCAGCACC 61.027 55.000 0.00 0.00 0.00 5.01
290 291 1.993369 GCGGTCATTTAGCAGCACCC 61.993 60.000 0.00 0.00 0.00 4.61
291 292 0.392998 CGGTCATTTAGCAGCACCCT 60.393 55.000 0.00 0.00 0.00 4.34
292 293 1.098050 GGTCATTTAGCAGCACCCTG 58.902 55.000 0.00 0.00 42.13 4.45
293 294 1.614317 GGTCATTTAGCAGCACCCTGT 60.614 52.381 0.00 0.00 41.26 4.00
294 295 2.162681 GTCATTTAGCAGCACCCTGTT 58.837 47.619 0.00 0.00 41.26 3.16
295 296 3.343617 GTCATTTAGCAGCACCCTGTTA 58.656 45.455 0.00 0.00 41.26 2.41
296 297 3.756434 GTCATTTAGCAGCACCCTGTTAA 59.244 43.478 0.00 0.00 41.22 2.01
300 301 4.846779 TTAGCAGCACCCTGTTAAAAAG 57.153 40.909 0.00 0.00 40.39 2.27
301 302 1.963515 AGCAGCACCCTGTTAAAAAGG 59.036 47.619 0.00 0.00 41.26 3.11
302 303 1.605457 GCAGCACCCTGTTAAAAAGGC 60.605 52.381 0.64 0.00 41.26 4.35
303 304 1.963515 CAGCACCCTGTTAAAAAGGCT 59.036 47.619 0.64 0.00 34.31 4.58
304 305 3.153919 CAGCACCCTGTTAAAAAGGCTA 58.846 45.455 0.00 0.00 34.31 3.93
305 306 3.763897 CAGCACCCTGTTAAAAAGGCTAT 59.236 43.478 0.00 0.00 34.31 2.97
306 307 4.947388 CAGCACCCTGTTAAAAAGGCTATA 59.053 41.667 0.00 0.00 34.31 1.31
307 308 5.066505 CAGCACCCTGTTAAAAAGGCTATAG 59.933 44.000 0.00 0.00 34.31 1.31
308 309 4.202020 GCACCCTGTTAAAAAGGCTATAGC 60.202 45.833 16.78 16.78 41.14 2.97
309 310 5.193679 CACCCTGTTAAAAAGGCTATAGCT 58.806 41.667 23.53 6.67 41.70 3.32
310 311 5.297029 CACCCTGTTAAAAAGGCTATAGCTC 59.703 44.000 23.53 13.86 41.70 4.09
311 312 5.045140 ACCCTGTTAAAAAGGCTATAGCTCA 60.045 40.000 23.53 9.46 41.70 4.26
312 313 5.529060 CCCTGTTAAAAAGGCTATAGCTCAG 59.471 44.000 23.53 16.20 41.70 3.35
313 314 5.008118 CCTGTTAAAAAGGCTATAGCTCAGC 59.992 44.000 23.53 10.99 41.70 4.26
314 315 5.745227 TGTTAAAAAGGCTATAGCTCAGCT 58.255 37.500 23.53 3.60 43.41 4.24
315 316 6.884832 TGTTAAAAAGGCTATAGCTCAGCTA 58.115 36.000 23.53 9.36 45.55 3.32
456 461 1.077429 CCCAGCTCCAAACTAGCCC 60.077 63.158 0.00 0.00 41.02 5.19
457 462 1.077429 CCAGCTCCAAACTAGCCCC 60.077 63.158 0.00 0.00 41.02 5.80
494 499 3.189287 GCGTCCATAAATATCAGCCCAAG 59.811 47.826 0.00 0.00 0.00 3.61
495 500 3.753272 CGTCCATAAATATCAGCCCAAGG 59.247 47.826 0.00 0.00 0.00 3.61
513 518 2.658593 CCGGACGCGGCTAATCTG 60.659 66.667 13.91 3.31 0.00 2.90
514 519 3.330853 CGGACGCGGCTAATCTGC 61.331 66.667 13.91 0.00 43.66 4.26
519 524 2.902343 GCGGCTAATCTGCACCCC 60.902 66.667 0.00 0.00 46.35 4.95
520 525 2.589540 CGGCTAATCTGCACCCCA 59.410 61.111 0.00 0.00 34.04 4.96
521 526 1.524621 CGGCTAATCTGCACCCCAG 60.525 63.158 0.00 0.00 43.17 4.45
522 527 1.825622 GGCTAATCTGCACCCCAGC 60.826 63.158 0.00 0.00 41.50 4.85
523 528 1.225704 GCTAATCTGCACCCCAGCT 59.774 57.895 0.00 0.00 41.50 4.24
524 529 0.817229 GCTAATCTGCACCCCAGCTC 60.817 60.000 0.00 0.00 41.50 4.09
525 530 0.543277 CTAATCTGCACCCCAGCTCA 59.457 55.000 0.00 0.00 41.50 4.26
526 531 0.991146 TAATCTGCACCCCAGCTCAA 59.009 50.000 0.00 0.00 41.50 3.02
527 532 0.112995 AATCTGCACCCCAGCTCAAA 59.887 50.000 0.00 0.00 41.50 2.69
528 533 0.333993 ATCTGCACCCCAGCTCAAAT 59.666 50.000 0.00 0.00 41.50 2.32
529 534 0.609957 TCTGCACCCCAGCTCAAATG 60.610 55.000 0.00 0.00 41.50 2.32
530 535 0.609957 CTGCACCCCAGCTCAAATGA 60.610 55.000 0.00 0.00 34.21 2.57
531 536 0.609957 TGCACCCCAGCTCAAATGAG 60.610 55.000 6.05 6.05 44.75 2.90
543 548 3.334691 CTCAAATGAGCTCGGGTAAACA 58.665 45.455 9.64 0.00 35.13 2.83
544 549 3.334691 TCAAATGAGCTCGGGTAAACAG 58.665 45.455 9.64 0.00 0.00 3.16
545 550 3.074412 CAAATGAGCTCGGGTAAACAGT 58.926 45.455 9.64 0.00 0.00 3.55
546 551 4.020928 TCAAATGAGCTCGGGTAAACAGTA 60.021 41.667 9.64 0.00 0.00 2.74
547 552 4.546829 AATGAGCTCGGGTAAACAGTAA 57.453 40.909 9.64 0.00 0.00 2.24
548 553 4.546829 ATGAGCTCGGGTAAACAGTAAA 57.453 40.909 9.64 0.00 0.00 2.01
549 554 4.339872 TGAGCTCGGGTAAACAGTAAAA 57.660 40.909 9.64 0.00 0.00 1.52
550 555 4.901868 TGAGCTCGGGTAAACAGTAAAAT 58.098 39.130 9.64 0.00 0.00 1.82
551 556 4.933400 TGAGCTCGGGTAAACAGTAAAATC 59.067 41.667 9.64 0.00 0.00 2.17
552 557 3.930848 AGCTCGGGTAAACAGTAAAATCG 59.069 43.478 0.00 0.00 0.00 3.34
553 558 3.928375 GCTCGGGTAAACAGTAAAATCGA 59.072 43.478 0.00 0.00 0.00 3.59
554 559 4.389687 GCTCGGGTAAACAGTAAAATCGAA 59.610 41.667 0.00 0.00 0.00 3.71
555 560 5.445540 GCTCGGGTAAACAGTAAAATCGAAG 60.446 44.000 0.00 0.00 0.00 3.79
556 561 5.782047 TCGGGTAAACAGTAAAATCGAAGA 58.218 37.500 0.00 0.00 45.75 2.87
557 562 6.222389 TCGGGTAAACAGTAAAATCGAAGAA 58.778 36.000 0.00 0.00 43.58 2.52
558 563 6.705381 TCGGGTAAACAGTAAAATCGAAGAAA 59.295 34.615 0.00 0.00 43.58 2.52
559 564 7.226325 TCGGGTAAACAGTAAAATCGAAGAAAA 59.774 33.333 0.00 0.00 43.58 2.29
560 565 7.856894 CGGGTAAACAGTAAAATCGAAGAAAAA 59.143 33.333 0.00 0.00 43.58 1.94
561 566 9.687210 GGGTAAACAGTAAAATCGAAGAAAAAT 57.313 29.630 0.00 0.00 43.58 1.82
607 612 9.487790 TTTGAAAGAAACATTGACAAAAGTTCT 57.512 25.926 9.09 7.13 0.00 3.01
612 617 9.573133 AAGAAACATTGACAAAAGTTCTAAGTG 57.427 29.630 9.09 0.00 0.00 3.16
613 618 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
614 619 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
615 620 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
616 621 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
617 622 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
618 623 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
619 624 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
620 625 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
621 626 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
622 627 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
623 628 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
624 629 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
625 630 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
626 631 4.159377 TCTAAGTGCCTGCAAAAATTCG 57.841 40.909 0.00 0.00 0.00 3.34
627 632 2.888834 AAGTGCCTGCAAAAATTCGT 57.111 40.000 0.00 0.00 0.00 3.85
628 633 2.422276 AGTGCCTGCAAAAATTCGTC 57.578 45.000 0.00 0.00 0.00 4.20
629 634 1.680735 AGTGCCTGCAAAAATTCGTCA 59.319 42.857 0.00 0.00 0.00 4.35
630 635 2.297033 AGTGCCTGCAAAAATTCGTCAT 59.703 40.909 0.00 0.00 0.00 3.06
631 636 2.409378 GTGCCTGCAAAAATTCGTCATG 59.591 45.455 0.00 0.00 0.00 3.07
632 637 2.295629 TGCCTGCAAAAATTCGTCATGA 59.704 40.909 0.00 0.00 0.00 3.07
633 638 3.243670 TGCCTGCAAAAATTCGTCATGAA 60.244 39.130 0.00 0.00 41.81 2.57
634 639 3.740321 GCCTGCAAAAATTCGTCATGAAA 59.260 39.130 0.00 0.00 40.71 2.69
635 640 4.389687 GCCTGCAAAAATTCGTCATGAAAT 59.610 37.500 0.00 0.00 40.71 2.17
636 641 5.445010 GCCTGCAAAAATTCGTCATGAAATC 60.445 40.000 0.00 0.00 40.71 2.17
637 642 5.634439 CCTGCAAAAATTCGTCATGAAATCA 59.366 36.000 0.00 0.00 40.71 2.57
638 643 6.400303 CCTGCAAAAATTCGTCATGAAATCAC 60.400 38.462 0.00 0.00 40.71 3.06
639 644 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
640 645 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
641 646 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
642 647 8.011106 GCAAAAATTCGTCATGAAATCACATTT 58.989 29.630 0.00 0.00 40.71 2.32
643 648 9.519905 CAAAAATTCGTCATGAAATCACATTTC 57.480 29.630 0.00 2.55 46.75 2.17
644 649 9.480053 AAAAATTCGTCATGAAATCACATTTCT 57.520 25.926 0.00 0.00 46.71 2.52
646 651 9.778993 AAATTCGTCATGAAATCACATTTCTAG 57.221 29.630 0.00 3.72 46.71 2.43
647 652 8.722480 ATTCGTCATGAAATCACATTTCTAGA 57.278 30.769 0.00 0.00 46.71 2.43
648 653 8.546597 TTCGTCATGAAATCACATTTCTAGAA 57.453 30.769 0.00 0.00 46.71 2.10
649 654 8.189709 TCGTCATGAAATCACATTTCTAGAAG 57.810 34.615 5.12 0.00 46.71 2.85
650 655 7.278646 TCGTCATGAAATCACATTTCTAGAAGG 59.721 37.037 5.12 5.08 46.71 3.46
651 656 7.192232 GTCATGAAATCACATTTCTAGAAGGC 58.808 38.462 5.12 0.00 46.71 4.35
652 657 5.801350 TGAAATCACATTTCTAGAAGGCG 57.199 39.130 5.12 1.16 46.71 5.52
653 658 5.245531 TGAAATCACATTTCTAGAAGGCGT 58.754 37.500 5.12 1.78 46.71 5.68
654 659 5.122239 TGAAATCACATTTCTAGAAGGCGTG 59.878 40.000 18.08 18.08 46.71 5.34
655 660 2.972625 TCACATTTCTAGAAGGCGTGG 58.027 47.619 21.32 7.48 0.00 4.94
656 661 1.398390 CACATTTCTAGAAGGCGTGGC 59.602 52.381 17.07 0.00 0.00 5.01
657 662 1.003118 ACATTTCTAGAAGGCGTGGCA 59.997 47.619 5.12 0.00 0.00 4.92
658 663 2.083774 CATTTCTAGAAGGCGTGGCAA 58.916 47.619 5.12 0.00 0.00 4.52
659 664 2.264005 TTTCTAGAAGGCGTGGCAAA 57.736 45.000 5.12 0.00 0.00 3.68
660 665 2.264005 TTCTAGAAGGCGTGGCAAAA 57.736 45.000 0.00 0.00 0.00 2.44
661 666 2.264005 TCTAGAAGGCGTGGCAAAAA 57.736 45.000 0.00 0.00 0.00 1.94
705 710 6.902224 AAAAAGCTACTTTCAAACGCATTT 57.098 29.167 0.00 0.00 31.99 2.32
706 711 6.902224 AAAAGCTACTTTCAAACGCATTTT 57.098 29.167 0.00 0.00 31.99 1.82
707 712 5.888412 AAGCTACTTTCAAACGCATTTTG 57.112 34.783 0.00 2.03 45.38 2.44
715 720 3.492725 CAAACGCATTTTGAAGCACTG 57.507 42.857 2.24 0.00 46.76 3.66
716 721 3.114809 CAAACGCATTTTGAAGCACTGA 58.885 40.909 2.24 0.00 46.76 3.41
717 722 3.435105 AACGCATTTTGAAGCACTGAA 57.565 38.095 0.00 0.00 0.00 3.02
718 723 3.648339 ACGCATTTTGAAGCACTGAAT 57.352 38.095 0.00 0.00 0.00 2.57
719 724 3.981211 ACGCATTTTGAAGCACTGAATT 58.019 36.364 0.00 0.00 0.00 2.17
720 725 4.370917 ACGCATTTTGAAGCACTGAATTT 58.629 34.783 0.00 0.00 0.00 1.82
721 726 4.209703 ACGCATTTTGAAGCACTGAATTTG 59.790 37.500 0.00 0.00 0.00 2.32
722 727 4.209703 CGCATTTTGAAGCACTGAATTTGT 59.790 37.500 0.00 0.00 0.00 2.83
723 728 5.276963 CGCATTTTGAAGCACTGAATTTGTT 60.277 36.000 0.00 0.00 0.00 2.83
724 729 6.488817 GCATTTTGAAGCACTGAATTTGTTT 58.511 32.000 0.00 0.00 0.00 2.83
725 730 6.968335 GCATTTTGAAGCACTGAATTTGTTTT 59.032 30.769 0.00 0.00 0.00 2.43
726 731 7.485595 GCATTTTGAAGCACTGAATTTGTTTTT 59.514 29.630 0.00 0.00 0.00 1.94
743 748 0.671251 TTTTTGCCACGCCTTACAGG 59.329 50.000 0.00 0.00 38.80 4.00
744 749 0.179015 TTTTGCCACGCCTTACAGGA 60.179 50.000 0.00 0.00 37.67 3.86
745 750 0.179015 TTTGCCACGCCTTACAGGAA 60.179 50.000 0.00 0.00 37.67 3.36
746 751 0.037590 TTGCCACGCCTTACAGGAAT 59.962 50.000 0.00 0.00 37.67 3.01
747 752 0.676466 TGCCACGCCTTACAGGAATG 60.676 55.000 0.00 0.00 37.67 2.67
748 753 0.676782 GCCACGCCTTACAGGAATGT 60.677 55.000 0.00 0.00 37.67 2.71
749 754 1.086696 CCACGCCTTACAGGAATGTG 58.913 55.000 0.00 0.00 37.67 3.21
750 755 1.338674 CCACGCCTTACAGGAATGTGA 60.339 52.381 10.25 0.00 37.67 3.58
751 756 2.632377 CACGCCTTACAGGAATGTGAT 58.368 47.619 0.00 0.00 37.67 3.06
752 757 3.009723 CACGCCTTACAGGAATGTGATT 58.990 45.455 0.00 0.00 37.67 2.57
753 758 3.440173 CACGCCTTACAGGAATGTGATTT 59.560 43.478 0.00 0.00 37.67 2.17
754 759 3.689649 ACGCCTTACAGGAATGTGATTTC 59.310 43.478 0.00 0.00 37.67 2.17
755 760 3.689161 CGCCTTACAGGAATGTGATTTCA 59.311 43.478 0.00 0.00 37.67 2.69
756 761 4.336433 CGCCTTACAGGAATGTGATTTCAT 59.664 41.667 0.00 0.00 37.67 2.57
757 762 5.585390 GCCTTACAGGAATGTGATTTCATG 58.415 41.667 0.00 0.00 41.77 3.07
758 763 5.357878 GCCTTACAGGAATGTGATTTCATGA 59.642 40.000 5.92 0.00 39.18 3.07
759 764 6.040166 GCCTTACAGGAATGTGATTTCATGAT 59.960 38.462 0.00 0.00 39.18 2.45
760 765 7.423199 CCTTACAGGAATGTGATTTCATGATG 58.577 38.462 0.00 0.00 39.18 3.07
761 766 7.283807 CCTTACAGGAATGTGATTTCATGATGA 59.716 37.037 0.00 0.00 39.18 2.92
762 767 8.578448 TTACAGGAATGTGATTTCATGATGAA 57.422 30.769 3.29 3.29 39.18 2.57
763 768 7.655521 ACAGGAATGTGATTTCATGATGAAT 57.344 32.000 8.90 0.00 39.18 2.57
764 769 8.074613 ACAGGAATGTGATTTCATGATGAATT 57.925 30.769 8.90 5.47 39.18 2.17
765 770 8.537016 ACAGGAATGTGATTTCATGATGAATTT 58.463 29.630 8.90 0.00 39.18 1.82
766 771 9.378551 CAGGAATGTGATTTCATGATGAATTTT 57.621 29.630 8.90 0.00 39.18 1.82
767 772 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
768 773 9.982291 GGAATGTGATTTCATGATGAATTTTTG 57.018 29.630 8.90 0.00 36.11 2.44
769 774 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
770 775 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
771 776 8.024146 TGTGATTTCATGATGAATTTTTGCAG 57.976 30.769 8.90 0.00 36.11 4.41
772 777 7.118535 TGTGATTTCATGATGAATTTTTGCAGG 59.881 33.333 8.90 0.00 36.11 4.85
773 778 5.866335 TTTCATGATGAATTTTTGCAGGC 57.134 34.783 8.90 0.00 36.11 4.85
774 779 4.538746 TCATGATGAATTTTTGCAGGCA 57.461 36.364 0.00 0.00 0.00 4.75
775 780 4.247258 TCATGATGAATTTTTGCAGGCAC 58.753 39.130 0.00 0.00 0.00 5.01
776 781 4.020928 TCATGATGAATTTTTGCAGGCACT 60.021 37.500 0.00 0.00 43.88 4.40
777 782 4.339872 TGATGAATTTTTGCAGGCACTT 57.660 36.364 0.00 0.00 34.60 3.16
778 783 5.465532 TGATGAATTTTTGCAGGCACTTA 57.534 34.783 0.00 0.00 34.60 2.24
779 784 5.472148 TGATGAATTTTTGCAGGCACTTAG 58.528 37.500 0.00 0.00 34.60 2.18
780 785 5.243507 TGATGAATTTTTGCAGGCACTTAGA 59.756 36.000 0.00 0.00 34.60 2.10
781 786 5.528043 TGAATTTTTGCAGGCACTTAGAA 57.472 34.783 0.00 0.00 34.60 2.10
782 787 5.288804 TGAATTTTTGCAGGCACTTAGAAC 58.711 37.500 0.00 0.00 34.60 3.01
783 788 5.068987 TGAATTTTTGCAGGCACTTAGAACT 59.931 36.000 0.00 0.00 34.60 3.01
784 789 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
785 790 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
786 791 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
787 792 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
788 793 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
789 794 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
790 795 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
791 796 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
792 797 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
793 798 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
794 799 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
795 800 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
796 801 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
797 802 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
798 803 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
799 804 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
800 805 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
801 806 9.657121 CTTAGAACTTTTGTCAATGTTTCTCTC 57.343 33.333 6.42 0.00 31.96 3.20
802 807 7.630242 AGAACTTTTGTCAATGTTTCTCTCA 57.370 32.000 6.10 0.00 31.96 3.27
803 808 8.055279 AGAACTTTTGTCAATGTTTCTCTCAA 57.945 30.769 6.10 0.00 31.96 3.02
804 809 8.522830 AGAACTTTTGTCAATGTTTCTCTCAAA 58.477 29.630 6.10 0.00 31.96 2.69
805 810 9.139174 GAACTTTTGTCAATGTTTCTCTCAAAA 57.861 29.630 6.10 0.00 31.96 2.44
806 811 9.487790 AACTTTTGTCAATGTTTCTCTCAAAAA 57.512 25.926 0.00 0.00 34.51 1.94
862 867 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
863 868 4.335082 TTCGATTTTACTGTTCATGCGG 57.665 40.909 0.00 0.00 0.00 5.69
864 869 2.675844 TCGATTTTACTGTTCATGCGGG 59.324 45.455 0.00 0.00 0.00 6.13
865 870 2.675844 CGATTTTACTGTTCATGCGGGA 59.324 45.455 0.00 0.00 0.00 5.14
866 871 3.242413 CGATTTTACTGTTCATGCGGGAG 60.242 47.826 0.00 0.00 0.00 4.30
883 888 1.070445 AGCATATGAGCTCGGGTGC 59.930 57.895 22.13 22.13 42.18 5.01
884 889 1.227645 GCATATGAGCTCGGGTGCA 60.228 57.895 23.72 2.95 34.99 4.57
885 890 1.226686 GCATATGAGCTCGGGTGCAG 61.227 60.000 23.72 7.32 34.99 4.41
886 891 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
887 892 1.123077 ATATGAGCTCGGGTGCAGAA 58.877 50.000 9.64 0.00 34.99 3.02
888 893 1.123077 TATGAGCTCGGGTGCAGAAT 58.877 50.000 9.64 0.00 34.99 2.40
889 894 0.463295 ATGAGCTCGGGTGCAGAATG 60.463 55.000 9.64 0.00 40.87 2.67
890 895 1.817099 GAGCTCGGGTGCAGAATGG 60.817 63.158 0.00 0.00 35.86 3.16
891 896 2.244117 GAGCTCGGGTGCAGAATGGA 62.244 60.000 0.00 0.00 35.86 3.41
902 907 0.811281 CAGAATGGACTTTTCGCCCC 59.189 55.000 0.00 0.00 0.00 5.80
953 964 4.715523 CCCAACCCGTCGCCACAT 62.716 66.667 0.00 0.00 0.00 3.21
958 969 2.588877 CCCGTCGCCACATCCATC 60.589 66.667 0.00 0.00 0.00 3.51
2358 4112 0.602905 GGCGACCCTTCAATATCGGG 60.603 60.000 0.00 0.00 43.79 5.14
2431 4185 7.437713 ACCAGAATGACCAGATTGAATACTA 57.562 36.000 0.00 0.00 39.69 1.82
2485 4241 8.906867 CCAACAAAATATGATGTCTATTCTGGT 58.093 33.333 0.00 0.00 30.26 4.00
2522 4278 8.932945 ACTAATGTTCAGATATACATATGCCG 57.067 34.615 1.58 0.00 34.04 5.69
2528 4284 8.749354 TGTTCAGATATACATATGCCGAAGTAT 58.251 33.333 1.58 0.00 0.00 2.12
2583 4339 4.728772 AGAATCTGACATGGGTTGTTGAA 58.271 39.130 0.00 0.00 39.18 2.69
2910 4666 0.597568 CTTCACATGAAAGGGCGCAA 59.402 50.000 10.83 0.00 33.07 4.85
2911 4667 1.000385 CTTCACATGAAAGGGCGCAAA 60.000 47.619 10.83 0.00 33.07 3.68
2918 4674 2.478831 TGAAAGGGCGCAAAATGAAAC 58.521 42.857 10.83 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.871686 AAATTTTATCTTTTTCGCTGTGAAGT 57.128 26.923 3.65 0.00 37.99 3.01
27 28 9.219603 GCATGAATAGTGACCTATAATAGCAAA 57.780 33.333 0.00 0.00 32.57 3.68
28 29 8.597167 AGCATGAATAGTGACCTATAATAGCAA 58.403 33.333 0.00 0.00 32.57 3.91
29 30 8.138928 AGCATGAATAGTGACCTATAATAGCA 57.861 34.615 0.00 0.00 32.57 3.49
35 36 9.725019 CCAAAATAGCATGAATAGTGACCTATA 57.275 33.333 0.00 0.00 32.57 1.31
36 37 7.175641 GCCAAAATAGCATGAATAGTGACCTAT 59.824 37.037 0.00 0.00 35.33 2.57
37 38 6.486657 GCCAAAATAGCATGAATAGTGACCTA 59.513 38.462 0.00 0.00 0.00 3.08
38 39 5.300286 GCCAAAATAGCATGAATAGTGACCT 59.700 40.000 0.00 0.00 0.00 3.85
39 40 5.300286 AGCCAAAATAGCATGAATAGTGACC 59.700 40.000 0.00 0.00 0.00 4.02
40 41 6.382869 AGCCAAAATAGCATGAATAGTGAC 57.617 37.500 0.00 0.00 0.00 3.67
41 42 8.518430 TTTAGCCAAAATAGCATGAATAGTGA 57.482 30.769 0.00 0.00 0.00 3.41
42 43 9.585099 TTTTTAGCCAAAATAGCATGAATAGTG 57.415 29.630 0.00 0.00 33.72 2.74
80 81 9.067986 GGAGAATTCCTCTTTGACTTCTTTTAA 57.932 33.333 0.65 0.00 41.66 1.52
81 82 8.622948 GGAGAATTCCTCTTTGACTTCTTTTA 57.377 34.615 0.65 0.00 41.66 1.52
82 83 7.517614 GGAGAATTCCTCTTTGACTTCTTTT 57.482 36.000 0.65 0.00 41.66 2.27
108 109 5.394224 ACCCGTGAGAAAAGTTTCAAAAA 57.606 34.783 6.56 0.00 39.61 1.94
109 110 5.415077 TGTACCCGTGAGAAAAGTTTCAAAA 59.585 36.000 6.56 0.00 39.61 2.44
110 111 4.942483 TGTACCCGTGAGAAAAGTTTCAAA 59.058 37.500 6.56 0.00 39.61 2.69
111 112 4.515361 TGTACCCGTGAGAAAAGTTTCAA 58.485 39.130 6.56 0.00 39.61 2.69
112 113 4.139859 TGTACCCGTGAGAAAAGTTTCA 57.860 40.909 6.56 0.00 39.61 2.69
113 114 5.449304 CATTGTACCCGTGAGAAAAGTTTC 58.551 41.667 0.00 0.00 37.45 2.78
114 115 4.277423 CCATTGTACCCGTGAGAAAAGTTT 59.723 41.667 0.00 0.00 0.00 2.66
115 116 3.818773 CCATTGTACCCGTGAGAAAAGTT 59.181 43.478 0.00 0.00 0.00 2.66
116 117 3.071892 TCCATTGTACCCGTGAGAAAAGT 59.928 43.478 0.00 0.00 0.00 2.66
117 118 3.670625 TCCATTGTACCCGTGAGAAAAG 58.329 45.455 0.00 0.00 0.00 2.27
118 119 3.773418 TCCATTGTACCCGTGAGAAAA 57.227 42.857 0.00 0.00 0.00 2.29
119 120 3.558321 CCTTCCATTGTACCCGTGAGAAA 60.558 47.826 0.00 0.00 0.00 2.52
120 121 2.027561 CCTTCCATTGTACCCGTGAGAA 60.028 50.000 0.00 0.00 0.00 2.87
121 122 1.553248 CCTTCCATTGTACCCGTGAGA 59.447 52.381 0.00 0.00 0.00 3.27
122 123 1.278127 ACCTTCCATTGTACCCGTGAG 59.722 52.381 0.00 0.00 0.00 3.51
123 124 1.002659 CACCTTCCATTGTACCCGTGA 59.997 52.381 0.00 0.00 0.00 4.35
124 125 1.002659 TCACCTTCCATTGTACCCGTG 59.997 52.381 0.00 0.00 0.00 4.94
125 126 1.354101 TCACCTTCCATTGTACCCGT 58.646 50.000 0.00 0.00 0.00 5.28
126 127 2.483014 TTCACCTTCCATTGTACCCG 57.517 50.000 0.00 0.00 0.00 5.28
127 128 5.738619 AAATTTCACCTTCCATTGTACCC 57.261 39.130 0.00 0.00 0.00 3.69
128 129 9.366216 GAAATAAATTTCACCTTCCATTGTACC 57.634 33.333 9.95 0.00 44.19 3.34
215 216 6.324512 ACGTTTGGTCTATGGGTACATATGTA 59.675 38.462 11.62 11.62 38.80 2.29
216 217 5.129815 ACGTTTGGTCTATGGGTACATATGT 59.870 40.000 13.93 13.93 38.80 2.29
217 218 5.607477 ACGTTTGGTCTATGGGTACATATG 58.393 41.667 0.00 0.00 38.80 1.78
218 219 5.221581 GGACGTTTGGTCTATGGGTACATAT 60.222 44.000 0.00 0.00 45.35 1.78
219 220 4.099881 GGACGTTTGGTCTATGGGTACATA 59.900 45.833 0.00 0.00 45.35 2.29
220 221 3.118519 GGACGTTTGGTCTATGGGTACAT 60.119 47.826 0.00 0.00 45.35 2.29
221 222 2.234414 GGACGTTTGGTCTATGGGTACA 59.766 50.000 0.00 0.00 45.35 2.90
222 223 2.736400 CGGACGTTTGGTCTATGGGTAC 60.736 54.545 0.00 0.00 45.35 3.34
223 224 1.477700 CGGACGTTTGGTCTATGGGTA 59.522 52.381 0.00 0.00 45.35 3.69
224 225 0.248289 CGGACGTTTGGTCTATGGGT 59.752 55.000 0.00 0.00 45.35 4.51
225 226 1.087771 GCGGACGTTTGGTCTATGGG 61.088 60.000 0.00 0.00 45.35 4.00
226 227 1.418342 CGCGGACGTTTGGTCTATGG 61.418 60.000 0.00 0.00 45.35 2.74
227 228 1.995991 CGCGGACGTTTGGTCTATG 59.004 57.895 0.00 0.00 45.35 2.23
228 229 4.489249 CGCGGACGTTTGGTCTAT 57.511 55.556 0.00 0.00 45.35 1.98
239 240 1.370172 CGCTATAGTGGACGCGGAC 60.370 63.158 12.47 3.78 41.72 4.79
240 241 3.028130 CGCTATAGTGGACGCGGA 58.972 61.111 12.47 0.00 41.72 5.54
247 248 4.699637 TCACAAATAACCCGCTATAGTGG 58.300 43.478 23.25 23.25 45.02 4.00
248 249 5.277345 GCTTCACAAATAACCCGCTATAGTG 60.277 44.000 6.31 6.31 0.00 2.74
249 250 4.814771 GCTTCACAAATAACCCGCTATAGT 59.185 41.667 0.84 0.00 0.00 2.12
250 251 4.084537 CGCTTCACAAATAACCCGCTATAG 60.085 45.833 0.00 0.00 0.00 1.31
251 252 3.805422 CGCTTCACAAATAACCCGCTATA 59.195 43.478 0.00 0.00 0.00 1.31
252 253 2.612212 CGCTTCACAAATAACCCGCTAT 59.388 45.455 0.00 0.00 0.00 2.97
253 254 2.004017 CGCTTCACAAATAACCCGCTA 58.996 47.619 0.00 0.00 0.00 4.26
254 255 0.802494 CGCTTCACAAATAACCCGCT 59.198 50.000 0.00 0.00 0.00 5.52
255 256 0.179174 CCGCTTCACAAATAACCCGC 60.179 55.000 0.00 0.00 0.00 6.13
256 257 1.129811 GACCGCTTCACAAATAACCCG 59.870 52.381 0.00 0.00 0.00 5.28
257 258 2.156098 TGACCGCTTCACAAATAACCC 58.844 47.619 0.00 0.00 0.00 4.11
258 259 4.434713 AATGACCGCTTCACAAATAACC 57.565 40.909 0.00 0.00 36.92 2.85
259 260 5.511729 GCTAAATGACCGCTTCACAAATAAC 59.488 40.000 0.00 0.00 36.92 1.89
260 261 5.182190 TGCTAAATGACCGCTTCACAAATAA 59.818 36.000 0.00 0.00 36.92 1.40
261 262 4.697828 TGCTAAATGACCGCTTCACAAATA 59.302 37.500 0.00 0.00 36.92 1.40
262 263 3.505680 TGCTAAATGACCGCTTCACAAAT 59.494 39.130 0.00 0.00 36.92 2.32
263 264 2.881513 TGCTAAATGACCGCTTCACAAA 59.118 40.909 0.00 0.00 36.92 2.83
264 265 2.483877 CTGCTAAATGACCGCTTCACAA 59.516 45.455 0.00 0.00 36.92 3.33
265 266 2.076100 CTGCTAAATGACCGCTTCACA 58.924 47.619 0.00 0.00 36.92 3.58
266 267 1.202076 GCTGCTAAATGACCGCTTCAC 60.202 52.381 0.00 0.00 36.92 3.18
267 268 1.086696 GCTGCTAAATGACCGCTTCA 58.913 50.000 0.00 0.00 39.11 3.02
268 269 1.086696 TGCTGCTAAATGACCGCTTC 58.913 50.000 0.00 0.00 0.00 3.86
269 270 0.804989 GTGCTGCTAAATGACCGCTT 59.195 50.000 0.00 0.00 0.00 4.68
270 271 1.026718 GGTGCTGCTAAATGACCGCT 61.027 55.000 0.00 0.00 0.00 5.52
271 272 1.429423 GGTGCTGCTAAATGACCGC 59.571 57.895 0.00 0.00 0.00 5.68
272 273 0.392998 AGGGTGCTGCTAAATGACCG 60.393 55.000 0.00 0.00 0.00 4.79
273 274 1.098050 CAGGGTGCTGCTAAATGACC 58.902 55.000 0.00 0.00 0.00 4.02
274 275 1.826385 ACAGGGTGCTGCTAAATGAC 58.174 50.000 0.00 0.00 0.00 3.06
275 276 2.584835 AACAGGGTGCTGCTAAATGA 57.415 45.000 0.00 0.00 0.00 2.57
276 277 4.782019 TTTAACAGGGTGCTGCTAAATG 57.218 40.909 0.00 0.00 0.00 2.32
277 278 5.279456 CCTTTTTAACAGGGTGCTGCTAAAT 60.279 40.000 0.00 0.00 28.90 1.40
278 279 4.038642 CCTTTTTAACAGGGTGCTGCTAAA 59.961 41.667 0.00 0.00 0.00 1.85
279 280 3.572255 CCTTTTTAACAGGGTGCTGCTAA 59.428 43.478 0.00 0.00 0.00 3.09
280 281 3.153919 CCTTTTTAACAGGGTGCTGCTA 58.846 45.455 0.00 0.00 0.00 3.49
281 282 1.963515 CCTTTTTAACAGGGTGCTGCT 59.036 47.619 0.00 0.00 0.00 4.24
282 283 1.605457 GCCTTTTTAACAGGGTGCTGC 60.605 52.381 0.00 0.00 31.20 5.25
283 284 1.963515 AGCCTTTTTAACAGGGTGCTG 59.036 47.619 0.67 0.00 40.77 4.41
284 285 2.381752 AGCCTTTTTAACAGGGTGCT 57.618 45.000 0.67 0.00 40.77 4.40
285 286 4.202020 GCTATAGCCTTTTTAACAGGGTGC 60.202 45.833 14.13 3.71 42.32 5.01
286 287 5.193679 AGCTATAGCCTTTTTAACAGGGTG 58.806 41.667 21.17 0.00 42.32 4.61
287 288 5.045140 TGAGCTATAGCCTTTTTAACAGGGT 60.045 40.000 21.17 7.06 44.56 4.34
288 289 5.437060 TGAGCTATAGCCTTTTTAACAGGG 58.563 41.667 21.17 0.00 43.38 4.45
289 290 5.008118 GCTGAGCTATAGCCTTTTTAACAGG 59.992 44.000 21.17 0.00 43.38 4.00
290 291 5.819901 AGCTGAGCTATAGCCTTTTTAACAG 59.180 40.000 21.17 16.06 42.07 3.16
291 292 5.745227 AGCTGAGCTATAGCCTTTTTAACA 58.255 37.500 21.17 7.87 42.07 2.41
306 307 8.971073 ACAACCATATTTTTAAATAGCTGAGCT 58.029 29.630 13.25 13.25 43.41 4.09
311 312 9.997482 CGTGTACAACCATATTTTTAAATAGCT 57.003 29.630 0.00 0.00 34.62 3.32
312 313 9.991388 TCGTGTACAACCATATTTTTAAATAGC 57.009 29.630 0.00 0.00 34.62 2.97
322 323 9.296400 GCATTTTATTTCGTGTACAACCATATT 57.704 29.630 0.00 0.00 0.00 1.28
323 324 8.462811 TGCATTTTATTTCGTGTACAACCATAT 58.537 29.630 0.00 0.00 0.00 1.78
324 325 7.817641 TGCATTTTATTTCGTGTACAACCATA 58.182 30.769 0.00 0.00 0.00 2.74
325 326 6.682746 TGCATTTTATTTCGTGTACAACCAT 58.317 32.000 0.00 0.00 0.00 3.55
326 327 6.073327 TGCATTTTATTTCGTGTACAACCA 57.927 33.333 0.00 0.00 0.00 3.67
327 328 8.850454 ATATGCATTTTATTTCGTGTACAACC 57.150 30.769 3.54 0.00 0.00 3.77
456 461 1.876714 CGCATAGGTCGGTTCGTGG 60.877 63.158 0.00 0.00 0.00 4.94
457 462 1.138047 GACGCATAGGTCGGTTCGTG 61.138 60.000 0.00 0.00 0.00 4.35
497 502 3.330853 GCAGATTAGCCGCGTCCG 61.331 66.667 4.92 0.00 0.00 4.79
498 503 2.202878 TGCAGATTAGCCGCGTCC 60.203 61.111 4.92 0.00 0.00 4.79
499 504 2.526120 GGTGCAGATTAGCCGCGTC 61.526 63.158 4.92 0.00 0.00 5.19
500 505 2.511600 GGTGCAGATTAGCCGCGT 60.512 61.111 4.92 0.00 0.00 6.01
501 506 3.272334 GGGTGCAGATTAGCCGCG 61.272 66.667 0.00 0.00 0.00 6.46
502 507 2.902343 GGGGTGCAGATTAGCCGC 60.902 66.667 0.00 0.00 36.57 6.53
503 508 1.524621 CTGGGGTGCAGATTAGCCG 60.525 63.158 0.00 0.00 36.57 5.52
504 509 1.825622 GCTGGGGTGCAGATTAGCC 60.826 63.158 0.00 0.00 35.00 3.93
505 510 0.817229 GAGCTGGGGTGCAGATTAGC 60.817 60.000 0.00 5.14 34.99 3.09
506 511 0.543277 TGAGCTGGGGTGCAGATTAG 59.457 55.000 0.00 0.00 34.99 1.73
507 512 0.991146 TTGAGCTGGGGTGCAGATTA 59.009 50.000 0.00 0.00 34.99 1.75
508 513 0.112995 TTTGAGCTGGGGTGCAGATT 59.887 50.000 0.00 0.00 34.99 2.40
509 514 0.333993 ATTTGAGCTGGGGTGCAGAT 59.666 50.000 0.00 0.00 34.99 2.90
510 515 0.609957 CATTTGAGCTGGGGTGCAGA 60.610 55.000 0.00 0.00 34.99 4.26
511 516 0.609957 TCATTTGAGCTGGGGTGCAG 60.610 55.000 0.00 0.00 34.99 4.41
512 517 0.609957 CTCATTTGAGCTGGGGTGCA 60.610 55.000 0.00 0.00 35.13 4.57
513 518 2.187073 CTCATTTGAGCTGGGGTGC 58.813 57.895 0.00 0.00 35.13 5.01
522 527 3.334691 TGTTTACCCGAGCTCATTTGAG 58.665 45.455 15.40 3.13 44.75 3.02
523 528 3.244422 ACTGTTTACCCGAGCTCATTTGA 60.244 43.478 15.40 0.00 0.00 2.69
524 529 3.074412 ACTGTTTACCCGAGCTCATTTG 58.926 45.455 15.40 0.79 0.00 2.32
525 530 3.418684 ACTGTTTACCCGAGCTCATTT 57.581 42.857 15.40 0.00 0.00 2.32
526 531 4.546829 TTACTGTTTACCCGAGCTCATT 57.453 40.909 15.40 0.00 0.00 2.57
527 532 4.546829 TTTACTGTTTACCCGAGCTCAT 57.453 40.909 15.40 0.57 0.00 2.90
528 533 4.339872 TTTTACTGTTTACCCGAGCTCA 57.660 40.909 15.40 0.00 0.00 4.26
529 534 4.032558 CGATTTTACTGTTTACCCGAGCTC 59.967 45.833 2.73 2.73 0.00 4.09
530 535 3.930848 CGATTTTACTGTTTACCCGAGCT 59.069 43.478 0.00 0.00 0.00 4.09
531 536 3.928375 TCGATTTTACTGTTTACCCGAGC 59.072 43.478 0.00 0.00 0.00 5.03
532 537 5.865552 TCTTCGATTTTACTGTTTACCCGAG 59.134 40.000 0.00 0.00 0.00 4.63
533 538 5.782047 TCTTCGATTTTACTGTTTACCCGA 58.218 37.500 0.00 0.00 0.00 5.14
534 539 6.470557 TTCTTCGATTTTACTGTTTACCCG 57.529 37.500 0.00 0.00 0.00 5.28
535 540 9.687210 ATTTTTCTTCGATTTTACTGTTTACCC 57.313 29.630 0.00 0.00 0.00 3.69
581 586 9.487790 AGAACTTTTGTCAATGTTTCTTTCAAA 57.512 25.926 6.10 0.00 31.96 2.69
586 591 9.573133 CACTTAGAACTTTTGTCAATGTTTCTT 57.427 29.630 7.85 1.84 31.96 2.52
587 592 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
588 593 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
589 594 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
590 595 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
591 596 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
592 597 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
593 598 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
594 599 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
595 600 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
596 601 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
597 602 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
598 603 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
599 604 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
600 605 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
601 606 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
602 607 5.532557 GAATTTTTGCAGGCACTTAGAACT 58.467 37.500 0.00 0.00 34.60 3.01
603 608 4.382754 CGAATTTTTGCAGGCACTTAGAAC 59.617 41.667 0.00 0.00 34.60 3.01
604 609 4.037446 ACGAATTTTTGCAGGCACTTAGAA 59.963 37.500 0.00 0.00 34.60 2.10
605 610 3.568007 ACGAATTTTTGCAGGCACTTAGA 59.432 39.130 0.00 0.00 34.60 2.10
606 611 3.900941 ACGAATTTTTGCAGGCACTTAG 58.099 40.909 0.00 0.00 34.60 2.18
607 612 3.316588 TGACGAATTTTTGCAGGCACTTA 59.683 39.130 0.00 0.00 34.60 2.24
608 613 2.100584 TGACGAATTTTTGCAGGCACTT 59.899 40.909 0.00 0.00 34.60 3.16
609 614 1.680735 TGACGAATTTTTGCAGGCACT 59.319 42.857 0.00 0.00 43.88 4.40
610 615 2.132740 TGACGAATTTTTGCAGGCAC 57.867 45.000 0.00 0.00 0.00 5.01
611 616 2.295629 TCATGACGAATTTTTGCAGGCA 59.704 40.909 0.00 0.00 0.00 4.75
612 617 2.945278 TCATGACGAATTTTTGCAGGC 58.055 42.857 0.00 0.00 0.00 4.85
613 618 5.634439 TGATTTCATGACGAATTTTTGCAGG 59.366 36.000 0.00 0.00 32.32 4.85
614 619 6.144241 TGTGATTTCATGACGAATTTTTGCAG 59.856 34.615 0.00 0.00 32.32 4.41
615 620 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
616 621 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
617 622 9.519905 GAAATGTGATTTCATGACGAATTTTTG 57.480 29.630 0.00 0.00 46.05 2.44
631 636 5.447818 CCACGCCTTCTAGAAATGTGATTTC 60.448 44.000 23.01 0.00 46.90 2.17
632 637 4.396166 CCACGCCTTCTAGAAATGTGATTT 59.604 41.667 23.01 3.35 34.64 2.17
633 638 3.941483 CCACGCCTTCTAGAAATGTGATT 59.059 43.478 23.01 3.88 0.00 2.57
634 639 3.535561 CCACGCCTTCTAGAAATGTGAT 58.464 45.455 23.01 7.98 0.00 3.06
635 640 2.935238 GCCACGCCTTCTAGAAATGTGA 60.935 50.000 23.01 0.00 0.00 3.58
636 641 1.398390 GCCACGCCTTCTAGAAATGTG 59.602 52.381 17.92 17.92 0.00 3.21
637 642 1.003118 TGCCACGCCTTCTAGAAATGT 59.997 47.619 6.63 2.59 0.00 2.71
638 643 1.737838 TGCCACGCCTTCTAGAAATG 58.262 50.000 6.63 2.12 0.00 2.32
639 644 2.489938 TTGCCACGCCTTCTAGAAAT 57.510 45.000 6.63 0.00 0.00 2.17
640 645 2.264005 TTTGCCACGCCTTCTAGAAA 57.736 45.000 6.63 0.00 0.00 2.52
641 646 2.264005 TTTTGCCACGCCTTCTAGAA 57.736 45.000 4.81 4.81 0.00 2.10
642 647 2.264005 TTTTTGCCACGCCTTCTAGA 57.736 45.000 0.00 0.00 0.00 2.43
682 687 6.902224 AAATGCGTTTGAAAGTAGCTTTTT 57.098 29.167 2.32 0.00 33.49 1.94
683 688 6.902224 AAAATGCGTTTGAAAGTAGCTTTT 57.098 29.167 4.29 0.00 36.97 2.27
695 700 3.114809 TCAGTGCTTCAAAATGCGTTTG 58.885 40.909 4.29 5.51 46.86 2.93
696 701 3.435105 TCAGTGCTTCAAAATGCGTTT 57.565 38.095 0.00 0.00 0.00 3.60
697 702 3.435105 TTCAGTGCTTCAAAATGCGTT 57.565 38.095 0.00 0.00 0.00 4.84
698 703 3.648339 ATTCAGTGCTTCAAAATGCGT 57.352 38.095 0.00 0.00 0.00 5.24
699 704 4.209703 ACAAATTCAGTGCTTCAAAATGCG 59.790 37.500 0.00 0.00 0.00 4.73
700 705 5.662211 ACAAATTCAGTGCTTCAAAATGC 57.338 34.783 0.00 0.00 0.00 3.56
701 706 8.898983 AAAAACAAATTCAGTGCTTCAAAATG 57.101 26.923 0.00 0.00 0.00 2.32
736 741 8.217131 TCATCATGAAATCACATTCCTGTAAG 57.783 34.615 0.00 0.00 33.14 2.34
737 742 8.578448 TTCATCATGAAATCACATTCCTGTAA 57.422 30.769 0.00 0.00 32.71 2.41
738 743 8.756486 ATTCATCATGAAATCACATTCCTGTA 57.244 30.769 3.63 0.00 40.12 2.74
739 744 7.655521 ATTCATCATGAAATCACATTCCTGT 57.344 32.000 3.63 0.00 40.12 4.00
740 745 8.942338 AAATTCATCATGAAATCACATTCCTG 57.058 30.769 3.63 0.00 40.12 3.86
741 746 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
742 747 9.982291 CAAAAATTCATCATGAAATCACATTCC 57.018 29.630 3.63 0.00 40.12 3.01
743 748 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
744 749 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
745 750 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
746 751 7.118535 CCTGCAAAAATTCATCATGAAATCACA 59.881 33.333 3.63 0.00 40.12 3.58
747 752 7.461107 CCTGCAAAAATTCATCATGAAATCAC 58.539 34.615 3.63 0.00 40.12 3.06
748 753 6.092944 GCCTGCAAAAATTCATCATGAAATCA 59.907 34.615 3.63 0.00 40.12 2.57
749 754 6.092944 TGCCTGCAAAAATTCATCATGAAATC 59.907 34.615 3.63 0.00 40.12 2.17
750 755 5.941058 TGCCTGCAAAAATTCATCATGAAAT 59.059 32.000 3.63 0.00 40.12 2.17
751 756 5.179742 GTGCCTGCAAAAATTCATCATGAAA 59.820 36.000 3.63 0.00 40.12 2.69
752 757 4.691685 GTGCCTGCAAAAATTCATCATGAA 59.308 37.500 1.59 1.59 41.09 2.57
753 758 4.020928 AGTGCCTGCAAAAATTCATCATGA 60.021 37.500 0.00 0.00 0.00 3.07
754 759 4.250464 AGTGCCTGCAAAAATTCATCATG 58.750 39.130 0.00 0.00 0.00 3.07
755 760 4.546829 AGTGCCTGCAAAAATTCATCAT 57.453 36.364 0.00 0.00 0.00 2.45
756 761 4.339872 AAGTGCCTGCAAAAATTCATCA 57.660 36.364 0.00 0.00 0.00 3.07
757 762 5.713025 TCTAAGTGCCTGCAAAAATTCATC 58.287 37.500 0.00 0.00 0.00 2.92
758 763 5.726980 TCTAAGTGCCTGCAAAAATTCAT 57.273 34.783 0.00 0.00 0.00 2.57
759 764 5.068987 AGTTCTAAGTGCCTGCAAAAATTCA 59.931 36.000 0.00 0.00 0.00 2.57
760 765 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
761 766 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
762 767 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
763 768 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
764 769 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
765 770 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
766 771 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
767 772 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
768 773 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
769 774 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
770 775 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
771 776 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
772 777 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
773 778 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
774 779 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
775 780 9.657121 GAGAGAAACATTGACAAAAGTTCTAAG 57.343 33.333 9.09 0.00 0.00 2.18
776 781 9.173021 TGAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
777 782 8.731275 TGAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
778 783 7.630242 TGAGAGAAACATTGACAAAAGTTCT 57.370 32.000 9.09 9.17 0.00 3.01
779 784 8.687824 TTTGAGAGAAACATTGACAAAAGTTC 57.312 30.769 9.09 5.33 0.00 3.01
780 785 9.487790 TTTTTGAGAGAAACATTGACAAAAGTT 57.512 25.926 0.00 0.00 37.18 2.66
839 844 5.627367 CCGCATGAACAGTAAAATCGAAAAA 59.373 36.000 0.00 0.00 0.00 1.94
840 845 5.150683 CCGCATGAACAGTAAAATCGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
841 846 4.378978 CCCGCATGAACAGTAAAATCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
842 847 3.126171 CCCGCATGAACAGTAAAATCGAA 59.874 43.478 0.00 0.00 0.00 3.71
843 848 2.675844 CCCGCATGAACAGTAAAATCGA 59.324 45.455 0.00 0.00 0.00 3.59
844 849 2.675844 TCCCGCATGAACAGTAAAATCG 59.324 45.455 0.00 0.00 0.00 3.34
845 850 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
846 851 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
847 852 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
848 853 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
849 854 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
850 855 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
851 856 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
866 871 1.226686 CTGCACCCGAGCTCATATGC 61.227 60.000 20.59 20.59 34.99 3.14
867 872 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
868 873 1.123077 TTCTGCACCCGAGCTCATAT 58.877 50.000 15.40 0.00 34.99 1.78
869 874 1.123077 ATTCTGCACCCGAGCTCATA 58.877 50.000 15.40 0.00 34.99 2.15
870 875 0.463295 CATTCTGCACCCGAGCTCAT 60.463 55.000 15.40 0.00 34.99 2.90
871 876 1.078918 CATTCTGCACCCGAGCTCA 60.079 57.895 15.40 0.00 34.99 4.26
872 877 1.817099 CCATTCTGCACCCGAGCTC 60.817 63.158 2.73 2.73 34.99 4.09
873 878 2.270205 CCATTCTGCACCCGAGCT 59.730 61.111 0.00 0.00 34.99 4.09
874 879 2.109126 GTCCATTCTGCACCCGAGC 61.109 63.158 0.00 0.00 0.00 5.03
875 880 0.036010 AAGTCCATTCTGCACCCGAG 60.036 55.000 0.00 0.00 0.00 4.63
876 881 0.400213 AAAGTCCATTCTGCACCCGA 59.600 50.000 0.00 0.00 0.00 5.14
877 882 1.200020 GAAAAGTCCATTCTGCACCCG 59.800 52.381 0.00 0.00 0.00 5.28
878 883 1.200020 CGAAAAGTCCATTCTGCACCC 59.800 52.381 0.00 0.00 0.00 4.61
879 884 1.401539 GCGAAAAGTCCATTCTGCACC 60.402 52.381 0.00 0.00 0.00 5.01
880 885 1.401539 GGCGAAAAGTCCATTCTGCAC 60.402 52.381 0.00 0.00 32.13 4.57
881 886 0.881118 GGCGAAAAGTCCATTCTGCA 59.119 50.000 0.00 0.00 32.13 4.41
882 887 0.171231 GGGCGAAAAGTCCATTCTGC 59.829 55.000 0.00 0.00 46.14 4.26
889 894 3.062466 GCCTGGGGCGAAAAGTCC 61.062 66.667 0.00 0.00 46.15 3.85
902 907 2.364186 GGTTGGATTGGGGGCCTG 60.364 66.667 0.84 0.00 0.00 4.85
953 964 1.228398 TGCGCAGTTTTGGGATGGA 60.228 52.632 5.66 0.00 39.46 3.41
958 969 2.353376 CGTGTGCGCAGTTTTGGG 60.353 61.111 12.22 0.00 40.04 4.12
1246 1265 0.801067 GTGTAGTCGATGACGGTGGC 60.801 60.000 0.00 0.00 37.67 5.01
1683 1708 3.900892 CGGCGCAGGTAGTCGGAT 61.901 66.667 10.83 0.00 0.00 4.18
2431 4185 1.084289 GCACCGAAGTCGCCTATTTT 58.916 50.000 0.00 0.00 38.18 1.82
2512 4268 6.321848 TCTTTCGATACTTCGGCATATGTA 57.678 37.500 4.29 0.00 45.53 2.29
2513 4269 5.196341 TCTTTCGATACTTCGGCATATGT 57.804 39.130 4.29 0.00 45.53 2.29
2522 4278 9.742552 GTAAACACAGAAATCTTTCGATACTTC 57.257 33.333 0.00 0.00 41.92 3.01
2883 4639 5.246307 GCCCTTTCATGTGAAGTTACTACT 58.754 41.667 9.58 0.00 35.21 2.57
2884 4640 4.092968 CGCCCTTTCATGTGAAGTTACTAC 59.907 45.833 9.58 0.00 35.21 2.73
2885 4641 4.250464 CGCCCTTTCATGTGAAGTTACTA 58.750 43.478 9.58 0.00 35.21 1.82
2886 4642 3.074412 CGCCCTTTCATGTGAAGTTACT 58.926 45.455 9.58 0.00 35.21 2.24
2887 4643 2.414161 GCGCCCTTTCATGTGAAGTTAC 60.414 50.000 0.00 0.00 35.21 2.50
2888 4644 1.810151 GCGCCCTTTCATGTGAAGTTA 59.190 47.619 0.00 0.00 35.21 2.24
2889 4645 0.598065 GCGCCCTTTCATGTGAAGTT 59.402 50.000 0.00 0.00 35.21 2.66
2890 4646 0.537143 TGCGCCCTTTCATGTGAAGT 60.537 50.000 4.18 0.00 35.21 3.01
2891 4647 0.597568 TTGCGCCCTTTCATGTGAAG 59.402 50.000 4.18 0.00 35.21 3.02
2892 4648 1.035923 TTTGCGCCCTTTCATGTGAA 58.964 45.000 4.18 0.00 0.00 3.18
2893 4649 1.035923 TTTTGCGCCCTTTCATGTGA 58.964 45.000 4.18 0.00 0.00 3.58
2894 4650 1.727880 CATTTTGCGCCCTTTCATGTG 59.272 47.619 4.18 0.00 0.00 3.21
2895 4651 1.617850 TCATTTTGCGCCCTTTCATGT 59.382 42.857 4.18 0.00 0.00 3.21
2896 4652 2.367030 TCATTTTGCGCCCTTTCATG 57.633 45.000 4.18 0.00 0.00 3.07
2918 4674 5.296780 ACTCTGTTTGGTGTAGTGAAACATG 59.703 40.000 0.00 0.00 41.43 3.21
2930 4686 5.006153 TCGGACATATACTCTGTTTGGTG 57.994 43.478 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.