Multiple sequence alignment - TraesCS1D01G319900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G319900 chr1D 100.000 3814 0 0 1 3814 413791299 413795112 0.000000e+00 7044.0
1 TraesCS1D01G319900 chr2D 98.062 3200 61 1 615 3814 481683675 481680477 0.000000e+00 5565.0
2 TraesCS1D01G319900 chr2D 96.455 1100 37 2 611 1709 6437067 6435969 0.000000e+00 1814.0
3 TraesCS1D01G319900 chr7D 97.638 3217 54 5 611 3814 579360011 579356804 0.000000e+00 5500.0
4 TraesCS1D01G319900 chr7D 94.594 2571 120 7 612 3167 390864243 390861677 0.000000e+00 3960.0
5 TraesCS1D01G319900 chr7D 95.553 2226 92 6 611 2833 599393994 599396215 0.000000e+00 3555.0
6 TraesCS1D01G319900 chr7D 82.051 117 15 5 3549 3662 20433022 20433135 1.130000e-15 95.3
7 TraesCS1D01G319900 chr3D 95.725 3205 98 15 611 3814 45628934 45625768 0.000000e+00 5123.0
8 TraesCS1D01G319900 chr7B 89.523 1174 107 11 610 1768 614610568 614611740 0.000000e+00 1472.0
9 TraesCS1D01G319900 chr7B 92.531 964 58 4 2319 3280 614612018 614612969 0.000000e+00 1369.0
10 TraesCS1D01G319900 chr3B 82.067 842 129 10 611 1432 764107887 764107048 0.000000e+00 699.0
11 TraesCS1D01G319900 chr3B 84.444 450 60 9 2262 2706 764106145 764105701 5.850000e-118 435.0
12 TraesCS1D01G319900 chr3B 83.621 116 13 5 3549 3661 750877611 750877499 1.870000e-18 104.0
13 TraesCS1D01G319900 chr1A 82.002 839 130 7 611 1429 561388514 561389351 0.000000e+00 693.0
14 TraesCS1D01G319900 chr1A 84.667 450 59 9 2262 2706 561390264 561390708 1.260000e-119 440.0
15 TraesCS1D01G319900 chr1A 91.878 197 14 2 412 608 510816704 510816898 1.350000e-69 274.0
16 TraesCS1D01G319900 chr1A 90.526 95 9 0 3243 3337 530606318 530606412 4.000000e-25 126.0
17 TraesCS1D01G319900 chr1B 81.719 733 107 20 3043 3767 563744556 563743843 1.530000e-163 586.0
18 TraesCS1D01G319900 chr1B 87.903 496 38 17 114 592 558504653 558505143 7.150000e-157 564.0
19 TraesCS1D01G319900 chr1B 84.410 449 62 7 2262 2706 121581888 121582332 5.850000e-118 435.0
20 TraesCS1D01G319900 chr1B 83.459 133 21 1 1252 1383 563745956 563745824 5.170000e-24 122.0
21 TraesCS1D01G319900 chr5B 73.605 932 198 40 2856 3772 163054047 163054945 7.950000e-82 315.0
22 TraesCS1D01G319900 chr3A 74.913 578 132 10 2835 3407 608093034 608093603 6.320000e-63 252.0
23 TraesCS1D01G319900 chr5A 74.003 627 148 14 2787 3406 234433695 234434313 1.370000e-59 241.0
24 TraesCS1D01G319900 chr5A 73.026 456 115 8 2901 3352 603368816 603369267 1.830000e-33 154.0
25 TraesCS1D01G319900 chr2B 72.769 437 111 7 2901 3333 793148727 793149159 1.430000e-29 141.0
26 TraesCS1D01G319900 chr6A 82.906 117 14 5 3549 3662 615376481 615376368 2.420000e-17 100.0
27 TraesCS1D01G319900 chr4B 80.435 138 19 7 3551 3684 63805901 63805768 8.720000e-17 99.0
28 TraesCS1D01G319900 chr6B 82.569 109 13 5 3551 3656 658559777 658559882 1.460000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G319900 chr1D 413791299 413795112 3813 False 7044.0 7044 100.0000 1 3814 1 chr1D.!!$F1 3813
1 TraesCS1D01G319900 chr2D 481680477 481683675 3198 True 5565.0 5565 98.0620 615 3814 1 chr2D.!!$R2 3199
2 TraesCS1D01G319900 chr2D 6435969 6437067 1098 True 1814.0 1814 96.4550 611 1709 1 chr2D.!!$R1 1098
3 TraesCS1D01G319900 chr7D 579356804 579360011 3207 True 5500.0 5500 97.6380 611 3814 1 chr7D.!!$R2 3203
4 TraesCS1D01G319900 chr7D 390861677 390864243 2566 True 3960.0 3960 94.5940 612 3167 1 chr7D.!!$R1 2555
5 TraesCS1D01G319900 chr7D 599393994 599396215 2221 False 3555.0 3555 95.5530 611 2833 1 chr7D.!!$F2 2222
6 TraesCS1D01G319900 chr3D 45625768 45628934 3166 True 5123.0 5123 95.7250 611 3814 1 chr3D.!!$R1 3203
7 TraesCS1D01G319900 chr7B 614610568 614612969 2401 False 1420.5 1472 91.0270 610 3280 2 chr7B.!!$F1 2670
8 TraesCS1D01G319900 chr3B 764105701 764107887 2186 True 567.0 699 83.2555 611 2706 2 chr3B.!!$R2 2095
9 TraesCS1D01G319900 chr1A 561388514 561390708 2194 False 566.5 693 83.3345 611 2706 2 chr1A.!!$F3 2095
10 TraesCS1D01G319900 chr1B 563743843 563745956 2113 True 354.0 586 82.5890 1252 3767 2 chr1B.!!$R1 2515
11 TraesCS1D01G319900 chr5B 163054047 163054945 898 False 315.0 315 73.6050 2856 3772 1 chr5B.!!$F1 916
12 TraesCS1D01G319900 chr3A 608093034 608093603 569 False 252.0 252 74.9130 2835 3407 1 chr3A.!!$F1 572
13 TraesCS1D01G319900 chr5A 234433695 234434313 618 False 241.0 241 74.0030 2787 3406 1 chr5A.!!$F1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 474 0.038166 TCTTGGATGCCAGGGTTGTC 59.962 55.000 0.00 0.00 33.81 3.18 F
546 547 0.104120 CCTGAACCCGCGATGATACA 59.896 55.000 8.23 0.00 0.00 2.29 F
757 758 0.314302 ATACGTAGATGGCAGGCGTC 59.686 55.000 8.17 8.17 37.05 5.19 F
1193 1214 1.863454 GATGCGCTCGATGTGAAGATT 59.137 47.619 9.73 0.00 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2012 2365 5.506708 TGCTACTGATAACCAGACTCAGTA 58.493 41.667 10.29 10.29 45.79 2.74 R
2048 2401 6.116126 GGACTTGTAGCATGGTAGATTCTTT 58.884 40.000 4.51 0.00 0.00 2.52 R
2581 3360 6.845908 ACTCTTGCCATATCTGATACCAAAT 58.154 36.000 0.00 0.00 0.00 2.32 R
3057 3838 0.391228 TCTACCACAAAGACTGCGCA 59.609 50.000 10.98 10.98 0.00 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.423154 GCTTTCCGCCGTGTCCTG 61.423 66.667 0.00 0.00 0.00 3.86
41 42 2.342279 CTTTCCGCCGTGTCCTGA 59.658 61.111 0.00 0.00 0.00 3.86
42 43 2.027625 CTTTCCGCCGTGTCCTGAC 61.028 63.158 0.00 0.00 0.00 3.51
43 44 3.524648 TTTCCGCCGTGTCCTGACC 62.525 63.158 0.00 0.00 0.00 4.02
73 74 4.121669 GTCGCTCAGCTCCGCTCA 62.122 66.667 0.00 0.00 36.40 4.26
74 75 3.143515 TCGCTCAGCTCCGCTCAT 61.144 61.111 0.00 0.00 36.40 2.90
75 76 2.657944 CGCTCAGCTCCGCTCATC 60.658 66.667 0.00 0.00 36.40 2.92
76 77 2.280052 GCTCAGCTCCGCTCATCC 60.280 66.667 0.00 0.00 36.40 3.51
77 78 2.795110 GCTCAGCTCCGCTCATCCT 61.795 63.158 0.00 0.00 36.40 3.24
78 79 1.363443 CTCAGCTCCGCTCATCCTC 59.637 63.158 0.00 0.00 36.40 3.71
79 80 1.076412 TCAGCTCCGCTCATCCTCT 60.076 57.895 0.00 0.00 36.40 3.69
80 81 1.067749 CAGCTCCGCTCATCCTCTG 59.932 63.158 0.00 0.00 36.40 3.35
81 82 1.076412 AGCTCCGCTCATCCTCTGA 60.076 57.895 0.00 0.00 30.62 3.27
82 83 1.067250 GCTCCGCTCATCCTCTGAC 59.933 63.158 0.00 0.00 0.00 3.51
83 84 1.391157 GCTCCGCTCATCCTCTGACT 61.391 60.000 0.00 0.00 0.00 3.41
84 85 0.385029 CTCCGCTCATCCTCTGACTG 59.615 60.000 0.00 0.00 0.00 3.51
85 86 1.039785 TCCGCTCATCCTCTGACTGG 61.040 60.000 0.00 0.00 0.00 4.00
86 87 1.227205 CGCTCATCCTCTGACTGGC 60.227 63.158 0.00 0.00 0.00 4.85
87 88 1.227205 GCTCATCCTCTGACTGGCG 60.227 63.158 0.00 0.00 0.00 5.69
88 89 1.227205 CTCATCCTCTGACTGGCGC 60.227 63.158 0.00 0.00 0.00 6.53
89 90 2.202987 CATCCTCTGACTGGCGCC 60.203 66.667 22.73 22.73 0.00 6.53
90 91 2.685017 ATCCTCTGACTGGCGCCA 60.685 61.111 30.59 30.59 0.00 5.69
91 92 3.023949 ATCCTCTGACTGGCGCCAC 62.024 63.158 29.03 18.49 0.00 5.01
92 93 4.767255 CCTCTGACTGGCGCCACC 62.767 72.222 29.03 20.79 39.84 4.61
120 121 4.719369 GCTTGCCTCGTCCGTCGT 62.719 66.667 0.00 0.00 40.80 4.34
121 122 2.504244 CTTGCCTCGTCCGTCGTC 60.504 66.667 0.00 0.00 40.80 4.20
122 123 2.979197 CTTGCCTCGTCCGTCGTCT 61.979 63.158 0.00 0.00 40.80 4.18
123 124 2.852431 CTTGCCTCGTCCGTCGTCTC 62.852 65.000 0.00 0.00 40.80 3.36
124 125 4.176851 GCCTCGTCCGTCGTCTCC 62.177 72.222 0.00 0.00 40.80 3.71
125 126 3.507009 CCTCGTCCGTCGTCTCCC 61.507 72.222 0.00 0.00 40.80 4.30
126 127 3.507009 CTCGTCCGTCGTCTCCCC 61.507 72.222 0.00 0.00 40.80 4.81
132 133 4.180946 CGTCGTCTCCCCGCTCTG 62.181 72.222 0.00 0.00 0.00 3.35
133 134 3.063084 GTCGTCTCCCCGCTCTGT 61.063 66.667 0.00 0.00 0.00 3.41
134 135 3.062466 TCGTCTCCCCGCTCTGTG 61.062 66.667 0.00 0.00 0.00 3.66
135 136 4.135153 CGTCTCCCCGCTCTGTGG 62.135 72.222 0.00 0.00 0.00 4.17
136 137 4.459089 GTCTCCCCGCTCTGTGGC 62.459 72.222 0.00 0.00 0.00 5.01
152 153 4.821589 GCCTCCGCCTCTTGGTCG 62.822 72.222 0.00 0.00 35.27 4.79
153 154 4.148825 CCTCCGCCTCTTGGTCGG 62.149 72.222 10.21 10.21 46.73 4.79
154 155 4.821589 CTCCGCCTCTTGGTCGGC 62.822 72.222 11.19 0.00 45.76 5.54
156 157 4.821589 CCGCCTCTTGGTCGGCTC 62.822 72.222 0.00 0.00 44.11 4.70
157 158 4.821589 CGCCTCTTGGTCGGCTCC 62.822 72.222 0.00 0.00 44.11 4.70
158 159 3.394836 GCCTCTTGGTCGGCTCCT 61.395 66.667 0.00 0.00 42.98 3.69
159 160 2.896443 CCTCTTGGTCGGCTCCTC 59.104 66.667 0.00 0.00 0.00 3.71
160 161 2.726351 CCTCTTGGTCGGCTCCTCC 61.726 68.421 0.00 0.00 0.00 4.30
161 162 2.683933 TCTTGGTCGGCTCCTCCC 60.684 66.667 0.00 0.00 0.00 4.30
162 163 3.003173 CTTGGTCGGCTCCTCCCA 61.003 66.667 0.00 0.00 0.00 4.37
163 164 3.316573 CTTGGTCGGCTCCTCCCAC 62.317 68.421 0.00 0.00 0.00 4.61
166 167 4.131088 GTCGGCTCCTCCCACGTC 62.131 72.222 0.00 0.00 0.00 4.34
169 170 3.462678 GGCTCCTCCCACGTCCTC 61.463 72.222 0.00 0.00 0.00 3.71
170 171 2.363147 GCTCCTCCCACGTCCTCT 60.363 66.667 0.00 0.00 0.00 3.69
171 172 2.716017 GCTCCTCCCACGTCCTCTG 61.716 68.421 0.00 0.00 0.00 3.35
172 173 2.680352 TCCTCCCACGTCCTCTGC 60.680 66.667 0.00 0.00 0.00 4.26
173 174 3.775654 CCTCCCACGTCCTCTGCC 61.776 72.222 0.00 0.00 0.00 4.85
174 175 2.681778 CTCCCACGTCCTCTGCCT 60.682 66.667 0.00 0.00 0.00 4.75
175 176 2.680352 TCCCACGTCCTCTGCCTC 60.680 66.667 0.00 0.00 0.00 4.70
176 177 4.135153 CCCACGTCCTCTGCCTCG 62.135 72.222 0.00 0.00 0.00 4.63
177 178 4.803426 CCACGTCCTCTGCCTCGC 62.803 72.222 0.00 0.00 0.00 5.03
178 179 4.803426 CACGTCCTCTGCCTCGCC 62.803 72.222 0.00 0.00 0.00 5.54
222 223 2.431601 GCTCAACGCAGCGAGAGT 60.432 61.111 29.15 6.82 38.92 3.24
223 224 2.440569 GCTCAACGCAGCGAGAGTC 61.441 63.158 29.15 21.72 38.92 3.36
224 225 1.081175 CTCAACGCAGCGAGAGTCA 60.081 57.895 24.65 0.00 32.80 3.41
225 226 1.069924 CTCAACGCAGCGAGAGTCAG 61.070 60.000 24.65 4.25 32.80 3.51
226 227 2.431601 AACGCAGCGAGAGTCAGC 60.432 61.111 24.65 2.79 0.00 4.26
228 229 4.767841 CGCAGCGAGAGTCAGCGT 62.768 66.667 9.98 0.00 43.08 5.07
229 230 3.177920 GCAGCGAGAGTCAGCGTG 61.178 66.667 7.17 6.53 38.61 5.34
230 231 2.505777 CAGCGAGAGTCAGCGTGG 60.506 66.667 7.17 0.00 38.61 4.94
231 232 2.986413 AGCGAGAGTCAGCGTGGT 60.986 61.111 7.17 0.00 38.61 4.16
232 233 2.505118 GCGAGAGTCAGCGTGGTC 60.505 66.667 7.17 0.00 0.00 4.02
233 234 2.954611 CGAGAGTCAGCGTGGTCA 59.045 61.111 0.00 0.00 0.00 4.02
234 235 1.442857 CGAGAGTCAGCGTGGTCAC 60.443 63.158 0.00 0.00 0.00 3.67
235 236 1.080434 GAGAGTCAGCGTGGTCACC 60.080 63.158 0.00 0.00 0.00 4.02
236 237 2.430921 GAGTCAGCGTGGTCACCG 60.431 66.667 0.00 0.00 0.00 4.94
237 238 3.208884 GAGTCAGCGTGGTCACCGT 62.209 63.158 0.00 0.00 0.00 4.83
238 239 3.036084 GTCAGCGTGGTCACCGTG 61.036 66.667 0.00 0.00 0.00 4.94
239 240 3.220658 TCAGCGTGGTCACCGTGA 61.221 61.111 0.00 0.00 0.00 4.35
240 241 2.048222 CAGCGTGGTCACCGTGAT 60.048 61.111 4.13 0.00 0.00 3.06
241 242 2.094659 CAGCGTGGTCACCGTGATC 61.095 63.158 4.13 4.43 0.00 2.92
242 243 3.179265 GCGTGGTCACCGTGATCG 61.179 66.667 4.13 11.02 27.66 3.69
243 244 2.564458 CGTGGTCACCGTGATCGA 59.436 61.111 4.13 0.00 39.71 3.59
244 245 1.138883 CGTGGTCACCGTGATCGAT 59.861 57.895 4.13 0.00 39.71 3.59
245 246 0.866061 CGTGGTCACCGTGATCGATC 60.866 60.000 18.72 18.72 39.71 3.69
246 247 0.456221 GTGGTCACCGTGATCGATCT 59.544 55.000 25.02 2.91 39.71 2.75
247 248 1.135083 GTGGTCACCGTGATCGATCTT 60.135 52.381 25.02 5.40 39.71 2.40
248 249 1.135112 TGGTCACCGTGATCGATCTTG 60.135 52.381 25.02 16.72 39.71 3.02
249 250 1.135083 GGTCACCGTGATCGATCTTGT 60.135 52.381 25.02 16.03 39.71 3.16
250 251 2.607187 GTCACCGTGATCGATCTTGTT 58.393 47.619 25.02 4.46 39.71 2.83
251 252 2.345641 GTCACCGTGATCGATCTTGTTG 59.654 50.000 25.02 15.68 39.71 3.33
252 253 2.230266 TCACCGTGATCGATCTTGTTGA 59.770 45.455 25.02 17.49 39.71 3.18
253 254 2.345641 CACCGTGATCGATCTTGTTGAC 59.654 50.000 25.02 13.11 39.71 3.18
254 255 2.231478 ACCGTGATCGATCTTGTTGACT 59.769 45.455 25.02 0.00 39.71 3.41
255 256 3.254060 CCGTGATCGATCTTGTTGACTT 58.746 45.455 25.02 0.00 39.71 3.01
256 257 3.304559 CCGTGATCGATCTTGTTGACTTC 59.695 47.826 25.02 0.00 39.71 3.01
257 258 4.169508 CGTGATCGATCTTGTTGACTTCT 58.830 43.478 25.02 0.00 39.71 2.85
258 259 4.264145 CGTGATCGATCTTGTTGACTTCTC 59.736 45.833 25.02 0.00 39.71 2.87
259 260 5.406649 GTGATCGATCTTGTTGACTTCTCT 58.593 41.667 25.02 0.00 0.00 3.10
260 261 5.514914 GTGATCGATCTTGTTGACTTCTCTC 59.485 44.000 25.02 0.00 0.00 3.20
261 262 4.442375 TCGATCTTGTTGACTTCTCTCC 57.558 45.455 0.00 0.00 0.00 3.71
262 263 3.119814 TCGATCTTGTTGACTTCTCTCCG 60.120 47.826 0.00 0.00 0.00 4.63
263 264 2.440539 TCTTGTTGACTTCTCTCCGC 57.559 50.000 0.00 0.00 0.00 5.54
264 265 1.964223 TCTTGTTGACTTCTCTCCGCT 59.036 47.619 0.00 0.00 0.00 5.52
265 266 2.029828 TCTTGTTGACTTCTCTCCGCTC 60.030 50.000 0.00 0.00 0.00 5.03
266 267 0.241213 TGTTGACTTCTCTCCGCTCG 59.759 55.000 0.00 0.00 0.00 5.03
267 268 0.241481 GTTGACTTCTCTCCGCTCGT 59.759 55.000 0.00 0.00 0.00 4.18
268 269 0.522180 TTGACTTCTCTCCGCTCGTC 59.478 55.000 0.00 0.00 0.00 4.20
269 270 1.306642 TGACTTCTCTCCGCTCGTCC 61.307 60.000 0.00 0.00 0.00 4.79
270 271 2.312398 GACTTCTCTCCGCTCGTCCG 62.312 65.000 0.00 0.00 0.00 4.79
271 272 2.359602 TTCTCTCCGCTCGTCCGT 60.360 61.111 0.00 0.00 0.00 4.69
272 273 2.312398 CTTCTCTCCGCTCGTCCGTC 62.312 65.000 0.00 0.00 0.00 4.79
273 274 4.225340 CTCTCCGCTCGTCCGTCG 62.225 72.222 0.00 0.00 41.41 5.12
298 299 4.410400 CACCACCGCCTCCCCTTC 62.410 72.222 0.00 0.00 0.00 3.46
299 300 4.658786 ACCACCGCCTCCCCTTCT 62.659 66.667 0.00 0.00 0.00 2.85
300 301 3.787001 CCACCGCCTCCCCTTCTC 61.787 72.222 0.00 0.00 0.00 2.87
301 302 3.787001 CACCGCCTCCCCTTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
304 305 3.839432 CGCCTCCCCTTCTCCGAC 61.839 72.222 0.00 0.00 0.00 4.79
305 306 2.683933 GCCTCCCCTTCTCCGACA 60.684 66.667 0.00 0.00 0.00 4.35
306 307 2.291043 GCCTCCCCTTCTCCGACAA 61.291 63.158 0.00 0.00 0.00 3.18
307 308 1.597461 CCTCCCCTTCTCCGACAAC 59.403 63.158 0.00 0.00 0.00 3.32
308 309 1.597461 CTCCCCTTCTCCGACAACC 59.403 63.158 0.00 0.00 0.00 3.77
309 310 1.900545 CTCCCCTTCTCCGACAACCC 61.901 65.000 0.00 0.00 0.00 4.11
310 311 1.918800 CCCCTTCTCCGACAACCCT 60.919 63.158 0.00 0.00 0.00 4.34
311 312 1.296715 CCCTTCTCCGACAACCCTG 59.703 63.158 0.00 0.00 0.00 4.45
312 313 1.376037 CCTTCTCCGACAACCCTGC 60.376 63.158 0.00 0.00 0.00 4.85
313 314 1.738099 CTTCTCCGACAACCCTGCG 60.738 63.158 0.00 0.00 0.00 5.18
314 315 3.234630 TTCTCCGACAACCCTGCGG 62.235 63.158 0.00 0.00 41.04 5.69
334 335 4.796231 TTCGCCGGCTCGCTCTTC 62.796 66.667 26.68 0.00 0.00 2.87
339 340 4.856607 CGGCTCGCTCTTCCCGAC 62.857 72.222 0.00 0.00 43.20 4.79
340 341 3.453679 GGCTCGCTCTTCCCGACT 61.454 66.667 0.00 0.00 0.00 4.18
341 342 2.103340 GCTCGCTCTTCCCGACTC 59.897 66.667 0.00 0.00 0.00 3.36
342 343 2.405594 CTCGCTCTTCCCGACTCG 59.594 66.667 0.00 0.00 0.00 4.18
343 344 2.359602 TCGCTCTTCCCGACTCGT 60.360 61.111 0.00 0.00 0.00 4.18
344 345 2.202492 CGCTCTTCCCGACTCGTG 60.202 66.667 0.00 0.00 0.00 4.35
345 346 2.182030 GCTCTTCCCGACTCGTGG 59.818 66.667 0.00 0.00 0.00 4.94
346 347 2.182030 CTCTTCCCGACTCGTGGC 59.818 66.667 0.00 0.00 0.00 5.01
347 348 3.685214 CTCTTCCCGACTCGTGGCG 62.685 68.421 5.58 5.58 0.00 5.69
381 382 4.742201 CGCTGTCCTCCACGGTGG 62.742 72.222 21.27 21.27 38.13 4.61
383 384 4.394712 CTGTCCTCCACGGTGGCC 62.395 72.222 22.42 10.12 37.47 5.36
387 388 4.489771 CCTCCACGGTGGCCCATC 62.490 72.222 22.42 0.00 37.47 3.51
388 389 4.838152 CTCCACGGTGGCCCATCG 62.838 72.222 22.42 16.35 44.22 3.84
401 402 4.863539 CATCGCGCTCGTCGTCGA 62.864 66.667 5.56 4.42 45.20 4.20
402 403 4.156622 ATCGCGCTCGTCGTCGAA 62.157 61.111 5.56 0.00 45.61 3.71
407 408 4.093952 GCTCGTCGTCGAACGGGA 62.094 66.667 13.53 7.52 46.09 5.14
408 409 2.097918 CTCGTCGTCGAACGGGAG 59.902 66.667 3.38 8.68 46.09 4.30
409 410 3.996744 CTCGTCGTCGAACGGGAGC 62.997 68.421 3.38 0.00 46.09 4.70
410 411 4.099170 CGTCGTCGAACGGGAGCT 62.099 66.667 0.00 0.00 42.81 4.09
411 412 2.504244 GTCGTCGAACGGGAGCTG 60.504 66.667 0.00 0.00 42.81 4.24
412 413 3.744719 TCGTCGAACGGGAGCTGG 61.745 66.667 0.00 0.00 42.81 4.85
413 414 3.744719 CGTCGAACGGGAGCTGGA 61.745 66.667 0.00 0.00 38.08 3.86
414 415 2.126031 GTCGAACGGGAGCTGGAC 60.126 66.667 0.00 0.00 0.00 4.02
415 416 3.379445 TCGAACGGGAGCTGGACC 61.379 66.667 0.00 0.00 0.00 4.46
416 417 4.452733 CGAACGGGAGCTGGACCC 62.453 72.222 0.00 0.00 43.57 4.46
417 418 4.097361 GAACGGGAGCTGGACCCC 62.097 72.222 3.43 0.65 44.09 4.95
441 442 4.717629 CGTCGCCGGTGCTCTTCA 62.718 66.667 11.05 0.00 34.43 3.02
442 443 2.357034 GTCGCCGGTGCTCTTCAA 60.357 61.111 11.05 0.00 34.43 2.69
443 444 2.048222 TCGCCGGTGCTCTTCAAG 60.048 61.111 11.05 0.00 34.43 3.02
444 445 2.048222 CGCCGGTGCTCTTCAAGA 60.048 61.111 0.00 0.00 34.43 3.02
445 446 2.097038 CGCCGGTGCTCTTCAAGAG 61.097 63.158 10.38 10.38 45.04 2.85
446 447 1.743252 GCCGGTGCTCTTCAAGAGG 60.743 63.158 16.46 0.77 42.54 3.69
447 448 1.674057 CCGGTGCTCTTCAAGAGGT 59.326 57.895 16.46 0.00 42.54 3.85
448 449 0.390472 CCGGTGCTCTTCAAGAGGTC 60.390 60.000 16.46 0.84 42.54 3.85
449 450 0.318441 CGGTGCTCTTCAAGAGGTCA 59.682 55.000 16.46 3.64 42.54 4.02
450 451 1.802069 GGTGCTCTTCAAGAGGTCAC 58.198 55.000 16.46 15.01 42.54 3.67
451 452 1.423395 GTGCTCTTCAAGAGGTCACG 58.577 55.000 16.46 0.00 42.54 4.35
452 453 0.319900 TGCTCTTCAAGAGGTCACGC 60.320 55.000 16.46 1.82 42.54 5.34
453 454 1.347817 GCTCTTCAAGAGGTCACGCG 61.348 60.000 16.46 3.53 42.54 6.01
454 455 0.039074 CTCTTCAAGAGGTCACGCGT 60.039 55.000 5.58 5.58 38.67 6.01
455 456 0.039437 TCTTCAAGAGGTCACGCGTC 60.039 55.000 9.86 0.00 0.00 5.19
456 457 0.039074 CTTCAAGAGGTCACGCGTCT 60.039 55.000 9.86 2.88 43.41 4.18
458 459 4.655527 AAGAGGTCACGCGTCTTG 57.344 55.556 9.86 0.00 46.71 3.02
459 460 1.006102 AAGAGGTCACGCGTCTTGG 60.006 57.895 9.86 0.00 46.71 3.61
460 461 1.461091 AAGAGGTCACGCGTCTTGGA 61.461 55.000 9.86 0.00 46.71 3.53
461 462 1.215647 GAGGTCACGCGTCTTGGAT 59.784 57.895 9.86 0.00 0.00 3.41
462 463 1.078759 GAGGTCACGCGTCTTGGATG 61.079 60.000 9.86 0.00 0.00 3.51
463 464 2.740714 GGTCACGCGTCTTGGATGC 61.741 63.158 9.86 2.03 40.75 3.91
464 465 2.434185 TCACGCGTCTTGGATGCC 60.434 61.111 9.86 0.00 41.05 4.40
465 466 2.741985 CACGCGTCTTGGATGCCA 60.742 61.111 9.86 0.00 41.05 4.92
466 467 2.434884 ACGCGTCTTGGATGCCAG 60.435 61.111 5.58 0.00 41.05 4.85
467 468 3.197790 CGCGTCTTGGATGCCAGG 61.198 66.667 0.00 0.00 41.05 4.45
468 469 2.825836 GCGTCTTGGATGCCAGGG 60.826 66.667 0.72 0.00 38.50 4.45
469 470 2.671070 CGTCTTGGATGCCAGGGT 59.329 61.111 0.00 0.00 33.81 4.34
470 471 1.002134 CGTCTTGGATGCCAGGGTT 60.002 57.895 0.00 0.00 33.81 4.11
471 472 1.308069 CGTCTTGGATGCCAGGGTTG 61.308 60.000 0.00 0.00 33.81 3.77
472 473 0.251341 GTCTTGGATGCCAGGGTTGT 60.251 55.000 0.00 0.00 33.81 3.32
473 474 0.038166 TCTTGGATGCCAGGGTTGTC 59.962 55.000 0.00 0.00 33.81 3.18
474 475 0.251297 CTTGGATGCCAGGGTTGTCA 60.251 55.000 0.00 0.00 33.81 3.58
475 476 0.539438 TTGGATGCCAGGGTTGTCAC 60.539 55.000 0.00 0.00 33.81 3.67
476 477 1.678970 GGATGCCAGGGTTGTCACC 60.679 63.158 0.00 0.00 43.37 4.02
477 478 1.380302 GATGCCAGGGTTGTCACCT 59.620 57.895 0.00 0.00 43.65 4.00
478 479 0.251341 GATGCCAGGGTTGTCACCTT 60.251 55.000 0.00 0.00 43.65 3.50
483 484 1.538047 CAGGGTTGTCACCTTGGATG 58.462 55.000 0.00 0.00 44.80 3.51
484 485 0.405585 AGGGTTGTCACCTTGGATGG 59.594 55.000 0.00 0.00 43.65 3.51
485 486 0.404040 GGGTTGTCACCTTGGATGGA 59.596 55.000 0.00 0.00 43.65 3.41
486 487 1.005924 GGGTTGTCACCTTGGATGGAT 59.994 52.381 0.00 0.00 43.65 3.41
487 488 2.369394 GGTTGTCACCTTGGATGGATC 58.631 52.381 0.00 0.00 40.44 3.36
488 489 2.945890 GGTTGTCACCTTGGATGGATCC 60.946 54.545 4.20 4.20 42.73 3.36
489 490 0.918983 TGTCACCTTGGATGGATCCC 59.081 55.000 9.90 0.00 46.59 3.85
490 491 0.918983 GTCACCTTGGATGGATCCCA 59.081 55.000 9.90 0.00 46.59 4.37
491 492 1.284785 GTCACCTTGGATGGATCCCAA 59.715 52.381 9.90 5.51 46.59 4.12
497 498 1.216064 TGGATGGATCCCAAGTCAGG 58.784 55.000 9.90 0.00 46.59 3.86
498 499 1.216990 GGATGGATCCCAAGTCAGGT 58.783 55.000 9.90 0.00 41.20 4.00
499 500 1.566231 GGATGGATCCCAAGTCAGGTT 59.434 52.381 9.90 0.00 41.20 3.50
500 501 2.648059 GATGGATCCCAAGTCAGGTTG 58.352 52.381 9.90 0.00 36.95 3.77
501 502 0.038166 TGGATCCCAAGTCAGGTTGC 59.962 55.000 9.90 0.00 0.00 4.17
502 503 0.329596 GGATCCCAAGTCAGGTTGCT 59.670 55.000 0.00 0.00 0.00 3.91
503 504 1.559682 GGATCCCAAGTCAGGTTGCTA 59.440 52.381 0.00 0.00 0.00 3.49
504 505 2.173569 GGATCCCAAGTCAGGTTGCTAT 59.826 50.000 0.00 0.00 0.00 2.97
505 506 3.372025 GGATCCCAAGTCAGGTTGCTATT 60.372 47.826 0.00 0.00 0.00 1.73
506 507 3.806949 TCCCAAGTCAGGTTGCTATTT 57.193 42.857 0.00 0.00 0.00 1.40
507 508 4.112634 TCCCAAGTCAGGTTGCTATTTT 57.887 40.909 0.00 0.00 0.00 1.82
508 509 4.479158 TCCCAAGTCAGGTTGCTATTTTT 58.521 39.130 0.00 0.00 0.00 1.94
528 529 3.695830 TTCAGAGTAATGACACCACCC 57.304 47.619 0.00 0.00 0.00 4.61
529 530 2.902608 TCAGAGTAATGACACCACCCT 58.097 47.619 0.00 0.00 0.00 4.34
530 531 2.567169 TCAGAGTAATGACACCACCCTG 59.433 50.000 0.00 0.00 0.00 4.45
531 532 2.567169 CAGAGTAATGACACCACCCTGA 59.433 50.000 0.00 0.00 0.00 3.86
532 533 3.007940 CAGAGTAATGACACCACCCTGAA 59.992 47.826 0.00 0.00 0.00 3.02
533 534 3.008049 AGAGTAATGACACCACCCTGAAC 59.992 47.826 0.00 0.00 0.00 3.18
534 535 2.039879 AGTAATGACACCACCCTGAACC 59.960 50.000 0.00 0.00 0.00 3.62
535 536 0.112412 AATGACACCACCCTGAACCC 59.888 55.000 0.00 0.00 0.00 4.11
536 537 2.032071 GACACCACCCTGAACCCG 59.968 66.667 0.00 0.00 0.00 5.28
537 538 4.265056 ACACCACCCTGAACCCGC 62.265 66.667 0.00 0.00 0.00 6.13
540 541 4.096003 CCACCCTGAACCCGCGAT 62.096 66.667 8.23 0.00 0.00 4.58
541 542 2.819595 CACCCTGAACCCGCGATG 60.820 66.667 8.23 0.00 0.00 3.84
542 543 3.000819 ACCCTGAACCCGCGATGA 61.001 61.111 8.23 0.00 0.00 2.92
543 544 2.367202 ACCCTGAACCCGCGATGAT 61.367 57.895 8.23 0.00 0.00 2.45
544 545 1.046472 ACCCTGAACCCGCGATGATA 61.046 55.000 8.23 0.00 0.00 2.15
545 546 0.600255 CCCTGAACCCGCGATGATAC 60.600 60.000 8.23 0.00 0.00 2.24
546 547 0.104120 CCTGAACCCGCGATGATACA 59.896 55.000 8.23 0.00 0.00 2.29
547 548 1.209128 CTGAACCCGCGATGATACAC 58.791 55.000 8.23 0.00 0.00 2.90
548 549 0.821517 TGAACCCGCGATGATACACT 59.178 50.000 8.23 0.00 0.00 3.55
549 550 1.209128 GAACCCGCGATGATACACTG 58.791 55.000 8.23 0.00 0.00 3.66
550 551 0.535335 AACCCGCGATGATACACTGT 59.465 50.000 8.23 0.00 0.00 3.55
551 552 1.395635 ACCCGCGATGATACACTGTA 58.604 50.000 8.23 0.00 0.00 2.74
552 553 1.752498 ACCCGCGATGATACACTGTAA 59.248 47.619 8.23 0.00 0.00 2.41
553 554 2.223735 ACCCGCGATGATACACTGTAAG 60.224 50.000 8.23 0.00 42.29 2.34
580 581 8.470040 AATTCTCATGTTCATTATGTTGTTGC 57.530 30.769 0.00 0.00 0.00 4.17
581 582 6.822667 TCTCATGTTCATTATGTTGTTGCT 57.177 33.333 0.00 0.00 0.00 3.91
582 583 6.845302 TCTCATGTTCATTATGTTGTTGCTC 58.155 36.000 0.00 0.00 0.00 4.26
583 584 6.656270 TCTCATGTTCATTATGTTGTTGCTCT 59.344 34.615 0.00 0.00 0.00 4.09
584 585 6.614160 TCATGTTCATTATGTTGTTGCTCTG 58.386 36.000 0.00 0.00 0.00 3.35
585 586 6.207221 TCATGTTCATTATGTTGTTGCTCTGT 59.793 34.615 0.00 0.00 0.00 3.41
586 587 6.389830 TGTTCATTATGTTGTTGCTCTGTT 57.610 33.333 0.00 0.00 0.00 3.16
587 588 7.503521 TGTTCATTATGTTGTTGCTCTGTTA 57.496 32.000 0.00 0.00 0.00 2.41
588 589 7.935520 TGTTCATTATGTTGTTGCTCTGTTAA 58.064 30.769 0.00 0.00 0.00 2.01
589 590 8.075574 TGTTCATTATGTTGTTGCTCTGTTAAG 58.924 33.333 0.00 0.00 0.00 1.85
590 591 7.977789 TCATTATGTTGTTGCTCTGTTAAGA 57.022 32.000 0.00 0.00 0.00 2.10
591 592 8.565896 TCATTATGTTGTTGCTCTGTTAAGAT 57.434 30.769 0.00 0.00 0.00 2.40
592 593 8.668353 TCATTATGTTGTTGCTCTGTTAAGATC 58.332 33.333 0.00 0.00 0.00 2.75
593 594 7.977789 TTATGTTGTTGCTCTGTTAAGATCA 57.022 32.000 0.00 0.00 0.00 2.92
594 595 6.882610 ATGTTGTTGCTCTGTTAAGATCAA 57.117 33.333 0.00 0.00 36.45 2.57
595 596 6.691754 TGTTGTTGCTCTGTTAAGATCAAA 57.308 33.333 0.00 0.00 39.56 2.69
596 597 6.494842 TGTTGTTGCTCTGTTAAGATCAAAC 58.505 36.000 0.00 0.00 39.56 2.93
597 598 6.094742 TGTTGTTGCTCTGTTAAGATCAAACA 59.905 34.615 11.72 11.72 39.56 2.83
598 599 6.060028 TGTTGCTCTGTTAAGATCAAACAC 57.940 37.500 9.00 2.66 39.56 3.32
599 600 5.822519 TGTTGCTCTGTTAAGATCAAACACT 59.177 36.000 9.00 0.00 39.56 3.55
600 601 6.989759 TGTTGCTCTGTTAAGATCAAACACTA 59.010 34.615 9.00 2.01 39.56 2.74
601 602 7.171508 TGTTGCTCTGTTAAGATCAAACACTAG 59.828 37.037 9.00 10.14 39.56 2.57
602 603 6.993079 TGCTCTGTTAAGATCAAACACTAGA 58.007 36.000 9.00 5.74 33.45 2.43
603 604 7.615403 TGCTCTGTTAAGATCAAACACTAGAT 58.385 34.615 9.00 0.00 33.45 1.98
604 605 8.097038 TGCTCTGTTAAGATCAAACACTAGATT 58.903 33.333 9.00 0.00 33.45 2.40
605 606 8.940952 GCTCTGTTAAGATCAAACACTAGATTT 58.059 33.333 9.00 0.00 33.45 2.17
757 758 0.314302 ATACGTAGATGGCAGGCGTC 59.686 55.000 8.17 8.17 37.05 5.19
1193 1214 1.863454 GATGCGCTCGATGTGAAGATT 59.137 47.619 9.73 0.00 0.00 2.40
1487 1524 3.932710 TGTTGTTGCTATCGACTGGAATC 59.067 43.478 0.00 0.00 0.00 2.52
2012 2365 3.708403 TTGTGCTTGAGATGATGGAGT 57.292 42.857 0.00 0.00 0.00 3.85
2160 2524 6.017440 TGCTACAAGTGGTGTTTGATCTTAAC 60.017 38.462 0.00 0.00 41.98 2.01
2581 3360 6.500049 ACAATTTGTATTCATGGGAAAAGGGA 59.500 34.615 0.00 0.00 36.43 4.20
2609 3388 2.666317 TCAGATATGGCAAGAGTCGGA 58.334 47.619 0.00 0.00 0.00 4.55
2775 3555 1.533994 AGGGAAAAGCTGGGGTTGC 60.534 57.895 0.00 0.00 0.00 4.17
2781 3561 1.463674 AAAGCTGGGGTTGCGAATAG 58.536 50.000 0.00 0.00 35.28 1.73
2796 3576 3.857383 GCGAATAGAAGATCTTGCCGCTA 60.857 47.826 14.00 8.32 35.16 4.26
2896 3677 1.126846 CACTCATTGTCGCCGAACTTC 59.873 52.381 0.00 0.00 0.00 3.01
2965 3746 3.409026 AGAGATCTTGTGAAGCCGTTT 57.591 42.857 0.00 0.00 0.00 3.60
3041 3822 2.104792 GGATCGATGGAGAATGTCCCAA 59.895 50.000 0.54 0.00 46.31 4.12
3057 3838 4.714308 TGTCCCAATCACAAAAAGGTCTTT 59.286 37.500 0.00 0.00 0.00 2.52
3058 3839 5.049828 GTCCCAATCACAAAAAGGTCTTTG 58.950 41.667 0.00 0.00 41.24 2.77
3059 3840 3.809279 CCCAATCACAAAAAGGTCTTTGC 59.191 43.478 0.00 0.00 39.46 3.68
3060 3841 3.490526 CCAATCACAAAAAGGTCTTTGCG 59.509 43.478 0.00 0.00 39.46 4.85
3061 3842 2.202295 TCACAAAAAGGTCTTTGCGC 57.798 45.000 0.00 0.00 39.46 6.09
3062 3843 1.474478 TCACAAAAAGGTCTTTGCGCA 59.526 42.857 5.66 5.66 39.46 6.09
3063 3844 1.854126 CACAAAAAGGTCTTTGCGCAG 59.146 47.619 11.31 0.00 39.46 5.18
3064 3845 1.476488 ACAAAAAGGTCTTTGCGCAGT 59.524 42.857 11.31 0.00 39.46 4.40
3065 3846 2.119457 CAAAAAGGTCTTTGCGCAGTC 58.881 47.619 11.31 2.33 32.36 3.51
3066 3847 1.680338 AAAAGGTCTTTGCGCAGTCT 58.320 45.000 11.31 2.11 32.36 3.24
3067 3848 1.680338 AAAGGTCTTTGCGCAGTCTT 58.320 45.000 11.31 8.44 0.00 3.01
3213 4005 6.213195 AGAATTAGGAATTTGATGTGGGCAAA 59.787 34.615 0.00 0.00 39.31 3.68
3564 4371 4.954202 TCTTATATCAGACCAGAACCGTGT 59.046 41.667 0.00 0.00 0.00 4.49
3689 4496 4.695455 CGAAGAAAAGTGAATTCAGGGCTA 59.305 41.667 8.80 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.027625 GTCAGGACACGGCGGAAAG 61.028 63.158 13.24 0.00 0.00 2.62
25 26 2.029964 GTCAGGACACGGCGGAAA 59.970 61.111 13.24 0.00 0.00 3.13
26 27 3.998672 GGTCAGGACACGGCGGAA 61.999 66.667 13.24 0.00 0.00 4.30
65 66 0.385029 CAGTCAGAGGATGAGCGGAG 59.615 60.000 0.00 0.00 39.07 4.63
66 67 1.039785 CCAGTCAGAGGATGAGCGGA 61.040 60.000 0.00 0.00 39.07 5.54
67 68 1.440893 CCAGTCAGAGGATGAGCGG 59.559 63.158 0.00 0.00 39.07 5.52
68 69 1.227205 GCCAGTCAGAGGATGAGCG 60.227 63.158 0.00 0.00 39.07 5.03
69 70 1.227205 CGCCAGTCAGAGGATGAGC 60.227 63.158 0.00 0.00 39.07 4.26
70 71 1.227205 GCGCCAGTCAGAGGATGAG 60.227 63.158 0.00 0.00 39.07 2.90
71 72 2.725312 GGCGCCAGTCAGAGGATGA 61.725 63.158 24.80 0.00 34.79 2.92
72 73 2.202987 GGCGCCAGTCAGAGGATG 60.203 66.667 24.80 0.00 0.00 3.51
73 74 2.685017 TGGCGCCAGTCAGAGGAT 60.685 61.111 29.03 0.00 0.00 3.24
74 75 3.695606 GTGGCGCCAGTCAGAGGA 61.696 66.667 33.73 0.00 29.49 3.71
75 76 4.767255 GGTGGCGCCAGTCAGAGG 62.767 72.222 33.73 0.00 37.17 3.69
103 104 4.719369 ACGACGGACGAGGCAAGC 62.719 66.667 6.90 0.00 45.77 4.01
104 105 2.504244 GACGACGGACGAGGCAAG 60.504 66.667 6.90 0.00 45.77 4.01
105 106 2.974489 GAGACGACGGACGAGGCAA 61.974 63.158 6.90 0.00 45.77 4.52
106 107 3.429141 GAGACGACGGACGAGGCA 61.429 66.667 6.90 0.00 45.77 4.75
107 108 4.176851 GGAGACGACGGACGAGGC 62.177 72.222 6.90 0.00 45.77 4.70
108 109 3.507009 GGGAGACGACGGACGAGG 61.507 72.222 6.90 0.00 45.77 4.63
109 110 3.507009 GGGGAGACGACGGACGAG 61.507 72.222 6.90 0.00 45.77 4.18
115 116 4.180946 CAGAGCGGGGAGACGACG 62.181 72.222 0.00 0.00 35.47 5.12
116 117 3.063084 ACAGAGCGGGGAGACGAC 61.063 66.667 0.00 0.00 35.47 4.34
117 118 3.062466 CACAGAGCGGGGAGACGA 61.062 66.667 0.00 0.00 35.47 4.20
118 119 4.135153 CCACAGAGCGGGGAGACG 62.135 72.222 0.00 0.00 0.00 4.18
119 120 4.459089 GCCACAGAGCGGGGAGAC 62.459 72.222 0.00 0.00 0.00 3.36
142 143 2.726351 GGAGGAGCCGACCAAGAGG 61.726 68.421 0.00 0.00 42.21 3.69
143 144 2.726351 GGGAGGAGCCGACCAAGAG 61.726 68.421 7.75 0.00 37.63 2.85
144 145 2.683933 GGGAGGAGCCGACCAAGA 60.684 66.667 7.75 0.00 37.63 3.02
145 146 3.003173 TGGGAGGAGCCGACCAAG 61.003 66.667 3.27 0.00 37.63 3.61
146 147 3.319198 GTGGGAGGAGCCGACCAA 61.319 66.667 6.77 0.00 39.29 3.67
149 150 4.131088 GACGTGGGAGGAGCCGAC 62.131 72.222 0.00 0.00 41.56 4.79
152 153 3.462678 GAGGACGTGGGAGGAGCC 61.463 72.222 0.00 0.00 0.00 4.70
153 154 2.363147 AGAGGACGTGGGAGGAGC 60.363 66.667 0.00 0.00 0.00 4.70
154 155 2.716017 GCAGAGGACGTGGGAGGAG 61.716 68.421 0.00 0.00 0.00 3.69
155 156 2.680352 GCAGAGGACGTGGGAGGA 60.680 66.667 0.00 0.00 0.00 3.71
156 157 3.775654 GGCAGAGGACGTGGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
157 158 2.681778 AGGCAGAGGACGTGGGAG 60.682 66.667 0.00 0.00 0.00 4.30
158 159 2.680352 GAGGCAGAGGACGTGGGA 60.680 66.667 0.00 0.00 0.00 4.37
159 160 4.135153 CGAGGCAGAGGACGTGGG 62.135 72.222 0.00 0.00 0.00 4.61
160 161 4.803426 GCGAGGCAGAGGACGTGG 62.803 72.222 0.00 0.00 0.00 4.94
161 162 4.803426 GGCGAGGCAGAGGACGTG 62.803 72.222 0.00 0.00 0.00 4.49
206 207 1.069924 CTGACTCTCGCTGCGTTGAG 61.070 60.000 29.82 29.82 35.87 3.02
207 208 1.081175 CTGACTCTCGCTGCGTTGA 60.081 57.895 22.48 18.72 0.00 3.18
208 209 2.724708 GCTGACTCTCGCTGCGTTG 61.725 63.158 22.48 15.60 0.00 4.10
209 210 2.431601 GCTGACTCTCGCTGCGTT 60.432 61.111 22.48 4.95 0.00 4.84
210 211 4.767841 CGCTGACTCTCGCTGCGT 62.768 66.667 22.48 1.55 44.90 5.24
212 213 3.177920 CACGCTGACTCTCGCTGC 61.178 66.667 0.00 0.00 0.00 5.25
213 214 2.505777 CCACGCTGACTCTCGCTG 60.506 66.667 0.00 0.00 0.00 5.18
214 215 2.983930 GACCACGCTGACTCTCGCT 61.984 63.158 0.00 0.00 0.00 4.93
215 216 2.505118 GACCACGCTGACTCTCGC 60.505 66.667 0.00 0.00 0.00 5.03
216 217 1.442857 GTGACCACGCTGACTCTCG 60.443 63.158 0.00 0.00 0.00 4.04
217 218 1.080434 GGTGACCACGCTGACTCTC 60.080 63.158 0.00 0.00 0.00 3.20
218 219 2.920645 CGGTGACCACGCTGACTCT 61.921 63.158 1.11 0.00 35.15 3.24
219 220 2.430921 CGGTGACCACGCTGACTC 60.431 66.667 1.11 0.00 35.15 3.36
220 221 3.224324 ACGGTGACCACGCTGACT 61.224 61.111 1.11 0.00 36.79 3.41
221 222 2.765250 ATCACGGTGACCACGCTGAC 62.765 60.000 13.92 0.00 36.79 3.51
222 223 2.486636 GATCACGGTGACCACGCTGA 62.487 60.000 13.92 0.00 36.79 4.26
223 224 2.048222 ATCACGGTGACCACGCTG 60.048 61.111 13.92 0.00 38.68 5.18
224 225 2.261671 GATCACGGTGACCACGCT 59.738 61.111 13.92 0.00 34.00 5.07
225 226 2.884087 ATCGATCACGGTGACCACGC 62.884 60.000 13.92 0.33 40.21 5.34
226 227 0.866061 GATCGATCACGGTGACCACG 60.866 60.000 20.52 17.94 40.21 4.94
227 228 0.456221 AGATCGATCACGGTGACCAC 59.544 55.000 26.47 7.29 40.21 4.16
228 229 1.135112 CAAGATCGATCACGGTGACCA 60.135 52.381 26.47 0.28 40.21 4.02
229 230 1.135083 ACAAGATCGATCACGGTGACC 60.135 52.381 26.47 1.82 40.21 4.02
230 231 2.279582 ACAAGATCGATCACGGTGAC 57.720 50.000 26.47 6.80 40.21 3.67
231 232 2.230266 TCAACAAGATCGATCACGGTGA 59.770 45.455 26.47 24.72 40.21 4.02
232 233 2.345641 GTCAACAAGATCGATCACGGTG 59.654 50.000 26.47 23.04 40.21 4.94
233 234 2.231478 AGTCAACAAGATCGATCACGGT 59.769 45.455 26.47 17.44 40.21 4.83
234 235 2.881074 AGTCAACAAGATCGATCACGG 58.119 47.619 26.47 16.83 40.21 4.94
235 236 4.169508 AGAAGTCAACAAGATCGATCACG 58.830 43.478 26.47 18.38 41.26 4.35
236 237 5.406649 AGAGAAGTCAACAAGATCGATCAC 58.593 41.667 26.47 14.61 0.00 3.06
237 238 5.393569 GGAGAGAAGTCAACAAGATCGATCA 60.394 44.000 26.47 2.33 0.00 2.92
238 239 5.040635 GGAGAGAAGTCAACAAGATCGATC 58.959 45.833 17.91 17.91 0.00 3.69
239 240 4.439426 CGGAGAGAAGTCAACAAGATCGAT 60.439 45.833 0.00 0.00 0.00 3.59
240 241 3.119814 CGGAGAGAAGTCAACAAGATCGA 60.120 47.826 0.00 0.00 0.00 3.59
241 242 3.175152 CGGAGAGAAGTCAACAAGATCG 58.825 50.000 0.00 0.00 0.00 3.69
242 243 2.926838 GCGGAGAGAAGTCAACAAGATC 59.073 50.000 0.00 0.00 0.00 2.75
243 244 2.564947 AGCGGAGAGAAGTCAACAAGAT 59.435 45.455 0.00 0.00 0.00 2.40
244 245 1.964223 AGCGGAGAGAAGTCAACAAGA 59.036 47.619 0.00 0.00 0.00 3.02
245 246 2.333014 GAGCGGAGAGAAGTCAACAAG 58.667 52.381 0.00 0.00 0.00 3.16
246 247 1.335964 CGAGCGGAGAGAAGTCAACAA 60.336 52.381 0.00 0.00 0.00 2.83
247 248 0.241213 CGAGCGGAGAGAAGTCAACA 59.759 55.000 0.00 0.00 0.00 3.33
248 249 0.241481 ACGAGCGGAGAGAAGTCAAC 59.759 55.000 0.00 0.00 0.00 3.18
249 250 0.522180 GACGAGCGGAGAGAAGTCAA 59.478 55.000 0.00 0.00 0.00 3.18
250 251 1.306642 GGACGAGCGGAGAGAAGTCA 61.307 60.000 0.00 0.00 0.00 3.41
251 252 1.430228 GGACGAGCGGAGAGAAGTC 59.570 63.158 0.00 0.00 0.00 3.01
252 253 2.400158 CGGACGAGCGGAGAGAAGT 61.400 63.158 0.00 0.00 0.00 3.01
253 254 2.312398 GACGGACGAGCGGAGAGAAG 62.312 65.000 0.00 0.00 0.00 2.85
254 255 2.359602 ACGGACGAGCGGAGAGAA 60.360 61.111 0.00 0.00 0.00 2.87
255 256 2.818714 GACGGACGAGCGGAGAGA 60.819 66.667 0.00 0.00 0.00 3.10
256 257 4.225340 CGACGGACGAGCGGAGAG 62.225 72.222 0.00 0.00 45.77 3.20
281 282 4.410400 GAAGGGGAGGCGGTGGTG 62.410 72.222 0.00 0.00 0.00 4.17
282 283 4.658786 AGAAGGGGAGGCGGTGGT 62.659 66.667 0.00 0.00 0.00 4.16
283 284 3.787001 GAGAAGGGGAGGCGGTGG 61.787 72.222 0.00 0.00 0.00 4.61
284 285 3.787001 GGAGAAGGGGAGGCGGTG 61.787 72.222 0.00 0.00 0.00 4.94
287 288 3.839432 GTCGGAGAAGGGGAGGCG 61.839 72.222 0.00 0.00 39.69 5.52
288 289 2.291043 TTGTCGGAGAAGGGGAGGC 61.291 63.158 0.00 0.00 39.69 4.70
289 290 1.597461 GTTGTCGGAGAAGGGGAGG 59.403 63.158 0.00 0.00 39.69 4.30
290 291 1.597461 GGTTGTCGGAGAAGGGGAG 59.403 63.158 0.00 0.00 39.69 4.30
291 292 1.916777 GGGTTGTCGGAGAAGGGGA 60.917 63.158 0.00 0.00 39.69 4.81
292 293 1.918800 AGGGTTGTCGGAGAAGGGG 60.919 63.158 0.00 0.00 39.69 4.79
293 294 1.296715 CAGGGTTGTCGGAGAAGGG 59.703 63.158 0.00 0.00 39.69 3.95
294 295 1.376037 GCAGGGTTGTCGGAGAAGG 60.376 63.158 0.00 0.00 39.69 3.46
295 296 1.738099 CGCAGGGTTGTCGGAGAAG 60.738 63.158 0.00 0.00 39.69 2.85
296 297 2.342279 CGCAGGGTTGTCGGAGAA 59.658 61.111 0.00 0.00 39.69 2.87
317 318 4.796231 GAAGAGCGAGCCGGCGAA 62.796 66.667 23.20 0.00 38.18 4.70
322 323 4.856607 GTCGGGAAGAGCGAGCCG 62.857 72.222 0.00 0.00 0.00 5.52
323 324 3.418744 GAGTCGGGAAGAGCGAGCC 62.419 68.421 0.00 0.00 0.00 4.70
324 325 2.103340 GAGTCGGGAAGAGCGAGC 59.897 66.667 0.00 0.00 0.00 5.03
325 326 2.400158 ACGAGTCGGGAAGAGCGAG 61.400 63.158 18.30 0.00 33.64 5.03
326 327 2.359602 ACGAGTCGGGAAGAGCGA 60.360 61.111 18.30 0.00 33.64 4.93
327 328 2.202492 CACGAGTCGGGAAGAGCG 60.202 66.667 18.30 0.00 35.00 5.03
328 329 2.182030 CCACGAGTCGGGAAGAGC 59.818 66.667 18.38 0.00 28.17 4.09
329 330 2.182030 GCCACGAGTCGGGAAGAG 59.818 66.667 18.38 0.00 28.17 2.85
330 331 3.744719 CGCCACGAGTCGGGAAGA 61.745 66.667 18.38 0.00 28.17 2.87
364 365 4.742201 CCACCGTGGAGGACAGCG 62.742 72.222 12.68 0.00 45.00 5.18
366 367 4.394712 GGCCACCGTGGAGGACAG 62.395 72.222 22.37 0.00 45.00 3.51
370 371 4.489771 GATGGGCCACCGTGGAGG 62.490 72.222 22.37 0.97 40.96 4.30
371 372 4.838152 CGATGGGCCACCGTGGAG 62.838 72.222 22.37 0.00 40.96 3.86
384 385 4.863539 TCGACGACGAGCGCGATG 62.864 66.667 19.05 10.73 46.04 3.84
392 393 4.093952 GCTCCCGTTCGACGACGA 62.094 66.667 11.09 5.75 46.05 4.20
393 394 4.099170 AGCTCCCGTTCGACGACG 62.099 66.667 0.00 0.00 46.05 5.12
394 395 2.504244 CAGCTCCCGTTCGACGAC 60.504 66.667 0.00 0.00 46.05 4.34
395 396 3.744719 CCAGCTCCCGTTCGACGA 61.745 66.667 8.63 0.00 46.05 4.20
396 397 3.744719 TCCAGCTCCCGTTCGACG 61.745 66.667 0.00 0.00 42.11 5.12
397 398 2.126031 GTCCAGCTCCCGTTCGAC 60.126 66.667 0.00 0.00 0.00 4.20
398 399 3.379445 GGTCCAGCTCCCGTTCGA 61.379 66.667 0.00 0.00 0.00 3.71
399 400 4.452733 GGGTCCAGCTCCCGTTCG 62.453 72.222 0.00 0.00 35.27 3.95
400 401 4.097361 GGGGTCCAGCTCCCGTTC 62.097 72.222 2.99 0.00 45.46 3.95
428 429 1.743252 CCTCTTGAAGAGCACCGGC 60.743 63.158 16.57 0.00 40.98 6.13
429 430 0.390472 GACCTCTTGAAGAGCACCGG 60.390 60.000 16.57 0.00 40.98 5.28
430 431 0.318441 TGACCTCTTGAAGAGCACCG 59.682 55.000 16.57 5.73 40.98 4.94
431 432 1.802069 GTGACCTCTTGAAGAGCACC 58.198 55.000 16.57 7.98 40.98 5.01
432 433 1.423395 CGTGACCTCTTGAAGAGCAC 58.577 55.000 16.57 17.17 40.98 4.40
433 434 0.319900 GCGTGACCTCTTGAAGAGCA 60.320 55.000 16.57 7.49 40.98 4.26
434 435 1.347817 CGCGTGACCTCTTGAAGAGC 61.348 60.000 16.57 4.88 40.98 4.09
435 436 0.039074 ACGCGTGACCTCTTGAAGAG 60.039 55.000 12.93 15.13 41.96 2.85
436 437 0.039437 GACGCGTGACCTCTTGAAGA 60.039 55.000 20.70 0.00 0.00 2.87
437 438 0.039074 AGACGCGTGACCTCTTGAAG 60.039 55.000 20.70 0.00 0.00 3.02
438 439 0.387929 AAGACGCGTGACCTCTTGAA 59.612 50.000 20.70 0.00 0.00 2.69
439 440 0.318699 CAAGACGCGTGACCTCTTGA 60.319 55.000 25.11 0.00 42.36 3.02
440 441 1.284982 CCAAGACGCGTGACCTCTTG 61.285 60.000 20.70 22.49 40.37 3.02
441 442 1.006102 CCAAGACGCGTGACCTCTT 60.006 57.895 20.70 10.89 0.00 2.85
442 443 1.251527 ATCCAAGACGCGTGACCTCT 61.252 55.000 20.70 3.34 0.00 3.69
443 444 1.078759 CATCCAAGACGCGTGACCTC 61.079 60.000 20.70 0.13 0.00 3.85
444 445 1.079819 CATCCAAGACGCGTGACCT 60.080 57.895 20.70 4.31 0.00 3.85
445 446 2.740714 GCATCCAAGACGCGTGACC 61.741 63.158 20.70 1.12 0.00 4.02
446 447 2.740714 GGCATCCAAGACGCGTGAC 61.741 63.158 20.70 2.09 0.00 3.67
447 448 2.434185 GGCATCCAAGACGCGTGA 60.434 61.111 20.70 8.26 0.00 4.35
448 449 2.741985 TGGCATCCAAGACGCGTG 60.742 61.111 20.70 0.93 0.00 5.34
449 450 2.434884 CTGGCATCCAAGACGCGT 60.435 61.111 13.85 13.85 30.80 6.01
450 451 3.197790 CCTGGCATCCAAGACGCG 61.198 66.667 3.53 3.53 30.80 6.01
451 452 2.825836 CCCTGGCATCCAAGACGC 60.826 66.667 0.00 0.00 30.80 5.19
452 453 1.002134 AACCCTGGCATCCAAGACG 60.002 57.895 0.00 0.00 30.80 4.18
453 454 0.251341 ACAACCCTGGCATCCAAGAC 60.251 55.000 0.00 0.00 30.80 3.01
454 455 0.038166 GACAACCCTGGCATCCAAGA 59.962 55.000 0.00 0.00 30.80 3.02
455 456 0.251297 TGACAACCCTGGCATCCAAG 60.251 55.000 0.00 0.00 34.82 3.61
456 457 0.539438 GTGACAACCCTGGCATCCAA 60.539 55.000 0.00 0.00 44.43 3.53
457 458 1.074775 GTGACAACCCTGGCATCCA 59.925 57.895 0.00 0.00 44.43 3.41
458 459 1.678970 GGTGACAACCCTGGCATCC 60.679 63.158 0.00 0.00 44.43 3.51
459 460 4.002797 GGTGACAACCCTGGCATC 57.997 61.111 0.00 0.00 44.43 3.91
467 468 2.945890 GGATCCATCCAAGGTGACAACC 60.946 54.545 6.95 0.00 46.38 3.77
468 469 2.369394 GGATCCATCCAAGGTGACAAC 58.631 52.381 6.95 0.00 46.38 3.32
469 470 2.806945 GGATCCATCCAAGGTGACAA 57.193 50.000 6.95 0.00 46.38 3.18
479 480 1.216990 ACCTGACTTGGGATCCATCC 58.783 55.000 15.23 0.00 46.41 3.51
480 481 2.648059 CAACCTGACTTGGGATCCATC 58.352 52.381 15.23 5.87 31.53 3.51
481 482 1.341383 GCAACCTGACTTGGGATCCAT 60.341 52.381 15.23 0.00 31.53 3.41
482 483 0.038166 GCAACCTGACTTGGGATCCA 59.962 55.000 15.23 0.00 0.00 3.41
483 484 0.329596 AGCAACCTGACTTGGGATCC 59.670 55.000 1.92 1.92 0.00 3.36
484 485 3.567478 ATAGCAACCTGACTTGGGATC 57.433 47.619 0.00 0.00 0.00 3.36
485 486 4.322057 AAATAGCAACCTGACTTGGGAT 57.678 40.909 0.00 0.00 0.00 3.85
486 487 3.806949 AAATAGCAACCTGACTTGGGA 57.193 42.857 0.00 0.00 0.00 4.37
487 488 4.871933 AAAAATAGCAACCTGACTTGGG 57.128 40.909 0.00 0.00 0.00 4.12
505 506 4.825085 GGGTGGTGTCATTACTCTGAAAAA 59.175 41.667 0.00 0.00 0.00 1.94
506 507 4.104102 AGGGTGGTGTCATTACTCTGAAAA 59.896 41.667 0.00 0.00 0.00 2.29
507 508 3.650942 AGGGTGGTGTCATTACTCTGAAA 59.349 43.478 0.00 0.00 0.00 2.69
508 509 3.007940 CAGGGTGGTGTCATTACTCTGAA 59.992 47.826 11.81 0.00 43.87 3.02
509 510 2.567169 CAGGGTGGTGTCATTACTCTGA 59.433 50.000 11.81 0.00 43.87 3.27
510 511 2.567169 TCAGGGTGGTGTCATTACTCTG 59.433 50.000 11.23 11.23 42.80 3.35
511 512 2.902608 TCAGGGTGGTGTCATTACTCT 58.097 47.619 0.00 0.00 0.00 3.24
512 513 3.335579 GTTCAGGGTGGTGTCATTACTC 58.664 50.000 0.00 0.00 0.00 2.59
513 514 2.039879 GGTTCAGGGTGGTGTCATTACT 59.960 50.000 0.00 0.00 0.00 2.24
514 515 2.433436 GGTTCAGGGTGGTGTCATTAC 58.567 52.381 0.00 0.00 0.00 1.89
515 516 1.353022 GGGTTCAGGGTGGTGTCATTA 59.647 52.381 0.00 0.00 0.00 1.90
516 517 0.112412 GGGTTCAGGGTGGTGTCATT 59.888 55.000 0.00 0.00 0.00 2.57
517 518 1.767692 GGGTTCAGGGTGGTGTCAT 59.232 57.895 0.00 0.00 0.00 3.06
518 519 2.813726 CGGGTTCAGGGTGGTGTCA 61.814 63.158 0.00 0.00 0.00 3.58
519 520 2.032071 CGGGTTCAGGGTGGTGTC 59.968 66.667 0.00 0.00 0.00 3.67
520 521 4.265056 GCGGGTTCAGGGTGGTGT 62.265 66.667 0.00 0.00 0.00 4.16
523 524 4.096003 ATCGCGGGTTCAGGGTGG 62.096 66.667 6.13 0.00 0.00 4.61
524 525 2.593468 ATCATCGCGGGTTCAGGGTG 62.593 60.000 6.13 0.00 0.00 4.61
525 526 1.046472 TATCATCGCGGGTTCAGGGT 61.046 55.000 6.13 0.00 0.00 4.34
526 527 0.600255 GTATCATCGCGGGTTCAGGG 60.600 60.000 6.13 0.00 0.00 4.45
527 528 0.104120 TGTATCATCGCGGGTTCAGG 59.896 55.000 6.13 0.00 0.00 3.86
528 529 1.202417 AGTGTATCATCGCGGGTTCAG 60.202 52.381 6.13 0.00 0.00 3.02
529 530 0.821517 AGTGTATCATCGCGGGTTCA 59.178 50.000 6.13 0.00 0.00 3.18
530 531 1.209128 CAGTGTATCATCGCGGGTTC 58.791 55.000 6.13 0.00 0.00 3.62
531 532 0.535335 ACAGTGTATCATCGCGGGTT 59.465 50.000 6.13 0.00 0.00 4.11
532 533 1.395635 TACAGTGTATCATCGCGGGT 58.604 50.000 6.13 0.00 0.00 5.28
533 534 2.223735 ACTTACAGTGTATCATCGCGGG 60.224 50.000 6.13 0.00 0.00 6.13
534 535 3.079960 ACTTACAGTGTATCATCGCGG 57.920 47.619 6.13 0.00 0.00 6.46
535 536 6.637254 AGAATTACTTACAGTGTATCATCGCG 59.363 38.462 3.28 0.00 0.00 5.87
536 537 7.648112 TGAGAATTACTTACAGTGTATCATCGC 59.352 37.037 3.28 0.95 0.00 4.58
537 538 9.684448 ATGAGAATTACTTACAGTGTATCATCG 57.316 33.333 3.28 0.00 0.00 3.84
544 545 9.507329 AATGAACATGAGAATTACTTACAGTGT 57.493 29.630 0.00 0.00 0.00 3.55
554 555 9.571810 GCAACAACATAATGAACATGAGAATTA 57.428 29.630 0.00 0.56 0.00 1.40
555 556 8.308931 AGCAACAACATAATGAACATGAGAATT 58.691 29.630 0.00 0.00 0.00 2.17
556 557 7.833786 AGCAACAACATAATGAACATGAGAAT 58.166 30.769 0.00 0.00 0.00 2.40
557 558 7.175467 AGAGCAACAACATAATGAACATGAGAA 59.825 33.333 0.00 0.00 0.00 2.87
558 559 6.656270 AGAGCAACAACATAATGAACATGAGA 59.344 34.615 0.00 0.00 0.00 3.27
559 560 6.745907 CAGAGCAACAACATAATGAACATGAG 59.254 38.462 0.00 0.00 0.00 2.90
560 561 6.207221 ACAGAGCAACAACATAATGAACATGA 59.793 34.615 0.00 0.00 0.00 3.07
561 562 6.384224 ACAGAGCAACAACATAATGAACATG 58.616 36.000 0.00 0.00 0.00 3.21
562 563 6.579666 ACAGAGCAACAACATAATGAACAT 57.420 33.333 0.00 0.00 0.00 2.71
563 564 6.389830 AACAGAGCAACAACATAATGAACA 57.610 33.333 0.00 0.00 0.00 3.18
564 565 8.289618 TCTTAACAGAGCAACAACATAATGAAC 58.710 33.333 0.00 0.00 0.00 3.18
565 566 8.389779 TCTTAACAGAGCAACAACATAATGAA 57.610 30.769 0.00 0.00 0.00 2.57
566 567 7.977789 TCTTAACAGAGCAACAACATAATGA 57.022 32.000 0.00 0.00 0.00 2.57
567 568 8.453320 TGATCTTAACAGAGCAACAACATAATG 58.547 33.333 0.00 0.00 42.60 1.90
568 569 8.565896 TGATCTTAACAGAGCAACAACATAAT 57.434 30.769 0.00 0.00 42.60 1.28
569 570 7.977789 TGATCTTAACAGAGCAACAACATAA 57.022 32.000 0.00 0.00 42.60 1.90
570 571 7.977789 TTGATCTTAACAGAGCAACAACATA 57.022 32.000 0.00 0.00 46.22 2.29
571 572 6.882610 TTGATCTTAACAGAGCAACAACAT 57.117 33.333 0.00 0.00 46.22 2.71
578 579 6.993079 TCTAGTGTTTGATCTTAACAGAGCA 58.007 36.000 12.35 0.00 43.89 4.26
579 580 8.485976 AATCTAGTGTTTGATCTTAACAGAGC 57.514 34.615 12.35 4.21 36.27 4.09
589 590 9.508567 GCTTCCAATAAAATCTAGTGTTTGATC 57.491 33.333 0.00 0.00 0.00 2.92
590 591 8.184192 CGCTTCCAATAAAATCTAGTGTTTGAT 58.816 33.333 0.00 0.00 0.00 2.57
591 592 7.361713 CCGCTTCCAATAAAATCTAGTGTTTGA 60.362 37.037 0.00 0.00 0.00 2.69
592 593 6.747280 CCGCTTCCAATAAAATCTAGTGTTTG 59.253 38.462 0.00 0.00 0.00 2.93
593 594 6.657541 TCCGCTTCCAATAAAATCTAGTGTTT 59.342 34.615 0.00 0.00 0.00 2.83
594 595 6.177610 TCCGCTTCCAATAAAATCTAGTGTT 58.822 36.000 0.00 0.00 0.00 3.32
595 596 5.741011 TCCGCTTCCAATAAAATCTAGTGT 58.259 37.500 0.00 0.00 0.00 3.55
596 597 5.817816 ACTCCGCTTCCAATAAAATCTAGTG 59.182 40.000 0.00 0.00 0.00 2.74
597 598 5.990668 ACTCCGCTTCCAATAAAATCTAGT 58.009 37.500 0.00 0.00 0.00 2.57
598 599 8.091449 AGATACTCCGCTTCCAATAAAATCTAG 58.909 37.037 0.00 0.00 0.00 2.43
599 600 7.963532 AGATACTCCGCTTCCAATAAAATCTA 58.036 34.615 0.00 0.00 0.00 1.98
600 601 6.831976 AGATACTCCGCTTCCAATAAAATCT 58.168 36.000 0.00 0.00 0.00 2.40
601 602 8.660373 CATAGATACTCCGCTTCCAATAAAATC 58.340 37.037 0.00 0.00 0.00 2.17
602 603 7.119846 GCATAGATACTCCGCTTCCAATAAAAT 59.880 37.037 0.00 0.00 0.00 1.82
603 604 6.426937 GCATAGATACTCCGCTTCCAATAAAA 59.573 38.462 0.00 0.00 0.00 1.52
604 605 5.932303 GCATAGATACTCCGCTTCCAATAAA 59.068 40.000 0.00 0.00 0.00 1.40
605 606 5.479306 GCATAGATACTCCGCTTCCAATAA 58.521 41.667 0.00 0.00 0.00 1.40
606 607 4.380550 CGCATAGATACTCCGCTTCCAATA 60.381 45.833 0.00 0.00 0.00 1.90
607 608 3.615110 CGCATAGATACTCCGCTTCCAAT 60.615 47.826 0.00 0.00 0.00 3.16
608 609 2.288213 CGCATAGATACTCCGCTTCCAA 60.288 50.000 0.00 0.00 0.00 3.53
1211 1247 0.321564 CCGCCAACTGATGTCCTTCA 60.322 55.000 0.00 0.00 0.00 3.02
1487 1524 7.153217 ACCGTCTATTTTCCTAAACCATTTG 57.847 36.000 0.00 0.00 0.00 2.32
2012 2365 5.506708 TGCTACTGATAACCAGACTCAGTA 58.493 41.667 10.29 10.29 45.79 2.74
2048 2401 6.116126 GGACTTGTAGCATGGTAGATTCTTT 58.884 40.000 4.51 0.00 0.00 2.52
2150 2514 9.340695 CATTTATCAAGTTTGCGTTAAGATCAA 57.659 29.630 0.00 0.00 0.00 2.57
2160 2524 7.393551 ACAAGTTTCATTTATCAAGTTTGCG 57.606 32.000 0.00 0.00 0.00 4.85
2581 3360 6.845908 ACTCTTGCCATATCTGATACCAAAT 58.154 36.000 0.00 0.00 0.00 2.32
2775 3555 2.748605 AGCGGCAAGATCTTCTATTCG 58.251 47.619 4.57 6.54 0.00 3.34
2781 3561 1.922570 TTCGTAGCGGCAAGATCTTC 58.077 50.000 4.57 0.75 0.00 2.87
2796 3576 4.440112 GCCTTATTAAAGCTTGGCATTCGT 60.440 41.667 16.16 0.00 40.04 3.85
2896 3677 1.421410 GCCAATGTAGTGTCTCGCCG 61.421 60.000 0.00 0.00 0.00 6.46
2961 3742 1.262950 TGACATTGTTCTGCCGAAACG 59.737 47.619 0.00 0.00 0.00 3.60
2965 3746 3.317711 ACAAATTGACATTGTTCTGCCGA 59.682 39.130 0.00 0.00 37.74 5.54
3041 3822 2.100584 TGCGCAAAGACCTTTTTGTGAT 59.899 40.909 8.16 0.00 46.34 3.06
3057 3838 0.391228 TCTACCACAAAGACTGCGCA 59.609 50.000 10.98 10.98 0.00 6.09
3058 3839 1.508632 TTCTACCACAAAGACTGCGC 58.491 50.000 0.00 0.00 0.00 6.09
3059 3840 5.390567 GGTTAATTCTACCACAAAGACTGCG 60.391 44.000 5.09 0.00 35.67 5.18
3060 3841 5.390567 CGGTTAATTCTACCACAAAGACTGC 60.391 44.000 9.58 0.00 35.31 4.40
3061 3842 5.929992 TCGGTTAATTCTACCACAAAGACTG 59.070 40.000 9.58 0.00 35.31 3.51
3062 3843 6.014840 TCTCGGTTAATTCTACCACAAAGACT 60.015 38.462 9.58 0.00 35.31 3.24
3063 3844 6.090493 GTCTCGGTTAATTCTACCACAAAGAC 59.910 42.308 9.58 10.69 35.31 3.01
3064 3845 6.161381 GTCTCGGTTAATTCTACCACAAAGA 58.839 40.000 9.58 4.63 35.31 2.52
3065 3846 5.350640 GGTCTCGGTTAATTCTACCACAAAG 59.649 44.000 9.58 2.89 35.31 2.77
3066 3847 5.221682 TGGTCTCGGTTAATTCTACCACAAA 60.222 40.000 9.58 0.00 35.31 2.83
3067 3848 4.283978 TGGTCTCGGTTAATTCTACCACAA 59.716 41.667 9.58 0.00 35.31 3.33
3213 4005 0.254178 CTGCAGCCTACTGTTCCCAT 59.746 55.000 0.00 0.00 46.30 4.00
3411 4204 1.142936 TGCTGAGCCACCCATCATAT 58.857 50.000 0.23 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.