Multiple sequence alignment - TraesCS1D01G319100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G319100 chr1D 100.000 3470 0 0 1 3470 413235491 413232022 0.000000e+00 6408
1 TraesCS1D01G319100 chr1D 90.247 1415 127 9 1019 2429 413224960 413226367 0.000000e+00 1838
2 TraesCS1D01G319100 chr1D 87.563 788 84 5 1506 2292 413359768 413358994 0.000000e+00 900
3 TraesCS1D01G319100 chr1D 82.979 658 85 13 1397 2047 413319370 413318733 1.400000e-158 569
4 TraesCS1D01G319100 chr1D 82.667 450 69 8 1019 1464 413373712 413373268 1.170000e-104 390
5 TraesCS1D01G319100 chr1D 85.088 228 23 2 1018 1245 413319632 413319416 4.510000e-54 222
6 TraesCS1D01G319100 chr1D 79.918 244 25 8 3242 3462 376611271 376611029 1.290000e-34 158
7 TraesCS1D01G319100 chr1D 76.707 249 35 6 3242 3467 296666727 296666975 2.190000e-22 117
8 TraesCS1D01G319100 chr1B 92.018 1779 105 12 768 2520 557412680 557410913 0.000000e+00 2464
9 TraesCS1D01G319100 chr1B 86.139 1414 179 9 1019 2425 557464402 557462999 0.000000e+00 1509
10 TraesCS1D01G319100 chr1B 86.900 771 79 15 1 761 557424457 557423699 0.000000e+00 845
11 TraesCS1D01G319100 chr1B 84.800 500 65 9 1 493 560335338 560334843 3.110000e-135 492
12 TraesCS1D01G319100 chr1B 83.333 366 41 13 2895 3244 465979685 465980046 1.550000e-83 320
13 TraesCS1D01G319100 chr1B 88.716 257 24 3 2992 3244 640165576 640165321 3.360000e-80 309
14 TraesCS1D01G319100 chr1B 90.244 205 11 3 2545 2741 557410801 557410598 3.440000e-65 259
15 TraesCS1D01G319100 chr1B 80.719 306 45 3 1019 1323 557402246 557402538 3.480000e-55 226
16 TraesCS1D01G319100 chr1B 79.508 244 27 13 3246 3467 10558351 10558109 6.000000e-33 152
17 TraesCS1D01G319100 chr1A 90.641 1731 116 15 897 2586 510343337 510341612 0.000000e+00 2257
18 TraesCS1D01G319100 chr1A 87.527 1411 168 6 1019 2425 510354283 510352877 0.000000e+00 1624
19 TraesCS1D01G319100 chr1A 89.966 588 54 4 1 584 510346633 510346047 0.000000e+00 754
20 TraesCS1D01G319100 chr1A 84.928 690 93 10 1019 1705 510292967 510293648 0.000000e+00 688
21 TraesCS1D01G319100 chr1A 95.732 164 6 1 748 910 510345244 510345081 2.660000e-66 263
22 TraesCS1D01G319100 chr1A 89.017 173 15 3 584 754 510345797 510345627 9.760000e-51 211
23 TraesCS1D01G319100 chr1A 81.548 168 22 3 2584 2742 510320366 510320199 2.810000e-26 130
24 TraesCS1D01G319100 chr7A 85.826 1404 178 16 1018 2420 62279350 62277967 0.000000e+00 1471
25 TraesCS1D01G319100 chr7A 80.723 249 26 13 3242 3468 563266517 563266269 1.280000e-39 174
26 TraesCS1D01G319100 chrUn 100.000 412 0 0 1928 2339 477522623 477523034 0.000000e+00 761
27 TraesCS1D01G319100 chrUn 83.203 637 92 13 12 640 30103222 30102593 1.400000e-158 569
28 TraesCS1D01G319100 chrUn 84.800 500 65 9 1 493 316822293 316821798 3.110000e-135 492
29 TraesCS1D01G319100 chrUn 84.800 500 65 9 1 493 382594321 382594816 3.110000e-135 492
30 TraesCS1D01G319100 chrUn 80.800 250 25 10 3242 3468 439257919 439257670 1.280000e-39 174
31 TraesCS1D01G319100 chr6B 88.138 607 67 4 33 636 563289297 563288693 0.000000e+00 717
32 TraesCS1D01G319100 chr2A 88.380 611 47 12 1969 2560 754464720 754464115 0.000000e+00 713
33 TraesCS1D01G319100 chr4A 82.419 620 97 11 1 613 527023974 527024588 6.590000e-147 531
34 TraesCS1D01G319100 chr4D 80.063 637 102 18 1 633 110809695 110810310 1.900000e-122 449
35 TraesCS1D01G319100 chr4D 87.500 288 29 5 2961 3243 319112883 319113168 3.340000e-85 326
36 TraesCS1D01G319100 chr4D 86.957 230 26 3 3242 3468 11007069 11007297 4.440000e-64 255
37 TraesCS1D01G319100 chr5D 87.889 289 27 6 2962 3244 377132747 377133033 2.000000e-87 333
38 TraesCS1D01G319100 chr5D 80.591 237 22 6 3242 3455 377144628 377144863 9.970000e-36 161
39 TraesCS1D01G319100 chr5A 86.552 290 29 9 2961 3244 68970427 68970712 9.350000e-81 311
40 TraesCS1D01G319100 chr5A 75.884 481 99 13 1026 1499 584716390 584716860 2.690000e-56 230
41 TraesCS1D01G319100 chr5A 78.629 248 29 11 3242 3466 129717411 129717657 3.610000e-30 143
42 TraesCS1D01G319100 chr6A 88.760 258 22 4 2992 3244 590211743 590211488 3.360000e-80 309
43 TraesCS1D01G319100 chr3B 84.112 321 41 8 2927 3244 440855609 440855922 5.630000e-78 302
44 TraesCS1D01G319100 chr4B 85.862 290 32 9 2961 3244 192694550 192694264 2.020000e-77 300
45 TraesCS1D01G319100 chr4B 85.862 290 32 9 2961 3244 192698202 192697916 2.020000e-77 300
46 TraesCS1D01G319100 chr4B 85.833 120 15 2 3350 3468 454740718 454740600 3.640000e-25 126
47 TraesCS1D01G319100 chr3D 81.818 253 21 12 3242 3470 138008295 138008044 4.570000e-44 189
48 TraesCS1D01G319100 chr3A 80.932 236 26 9 3252 3468 61335084 61334849 5.960000e-38 169
49 TraesCS1D01G319100 chr3A 86.290 124 16 1 3348 3470 12474196 12474319 2.170000e-27 134
50 TraesCS1D01G319100 chr2D 79.518 249 28 13 3242 3468 197834344 197834591 4.640000e-34 156
51 TraesCS1D01G319100 chr7D 78.500 200 20 5 3243 3419 54549757 54549956 3.660000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G319100 chr1D 413232022 413235491 3469 True 6408.00 6408 100.0000 1 3470 1 chr1D.!!$R2 3469
1 TraesCS1D01G319100 chr1D 413224960 413226367 1407 False 1838.00 1838 90.2470 1019 2429 1 chr1D.!!$F2 1410
2 TraesCS1D01G319100 chr1D 413358994 413359768 774 True 900.00 900 87.5630 1506 2292 1 chr1D.!!$R3 786
3 TraesCS1D01G319100 chr1D 413318733 413319632 899 True 395.50 569 84.0335 1018 2047 2 chr1D.!!$R5 1029
4 TraesCS1D01G319100 chr1B 557462999 557464402 1403 True 1509.00 1509 86.1390 1019 2425 1 chr1B.!!$R3 1406
5 TraesCS1D01G319100 chr1B 557410598 557412680 2082 True 1361.50 2464 91.1310 768 2741 2 chr1B.!!$R6 1973
6 TraesCS1D01G319100 chr1B 557423699 557424457 758 True 845.00 845 86.9000 1 761 1 chr1B.!!$R2 760
7 TraesCS1D01G319100 chr1A 510352877 510354283 1406 True 1624.00 1624 87.5270 1019 2425 1 chr1A.!!$R2 1406
8 TraesCS1D01G319100 chr1A 510341612 510346633 5021 True 871.25 2257 91.3390 1 2586 4 chr1A.!!$R3 2585
9 TraesCS1D01G319100 chr1A 510292967 510293648 681 False 688.00 688 84.9280 1019 1705 1 chr1A.!!$F1 686
10 TraesCS1D01G319100 chr7A 62277967 62279350 1383 True 1471.00 1471 85.8260 1018 2420 1 chr7A.!!$R1 1402
11 TraesCS1D01G319100 chrUn 30102593 30103222 629 True 569.00 569 83.2030 12 640 1 chrUn.!!$R1 628
12 TraesCS1D01G319100 chr6B 563288693 563289297 604 True 717.00 717 88.1380 33 636 1 chr6B.!!$R1 603
13 TraesCS1D01G319100 chr2A 754464115 754464720 605 True 713.00 713 88.3800 1969 2560 1 chr2A.!!$R1 591
14 TraesCS1D01G319100 chr4A 527023974 527024588 614 False 531.00 531 82.4190 1 613 1 chr4A.!!$F1 612
15 TraesCS1D01G319100 chr4D 110809695 110810310 615 False 449.00 449 80.0630 1 633 1 chr4D.!!$F2 632
16 TraesCS1D01G319100 chr4B 192694264 192698202 3938 True 300.00 300 85.8620 2961 3244 2 chr4B.!!$R2 283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 235 0.238553 GCTTGGTTCTTCGTTGCTCC 59.761 55.0 0.0 0.0 0.0 4.70 F
1618 4082 0.035915 GAGGTGCCAGGAGAAAGACC 60.036 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 4138 1.416401 AGGTCCATGAACGTGTTGACT 59.584 47.619 0.0 0.0 0.0 3.41 R
2814 5481 0.036732 TGGATGTGCTGGAGTTGGTC 59.963 55.000 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 2.484264 CGACATTTTTCTCCCTCGCTTT 59.516 45.455 0.00 0.00 0.00 3.51
190 192 0.592637 TCGGCGTCGTTTCTCTGTTA 59.407 50.000 10.18 0.00 37.69 2.41
233 235 0.238553 GCTTGGTTCTTCGTTGCTCC 59.761 55.000 0.00 0.00 0.00 4.70
277 279 2.331809 TATTGATCCTCGACGATGCG 57.668 50.000 0.00 0.00 0.00 4.73
308 310 2.110213 GCCGGTGTGTCCAAGACA 59.890 61.111 1.90 0.00 40.50 3.41
320 322 2.115427 TCCAAGACAGTGTGTTCCTCA 58.885 47.619 0.00 0.00 0.00 3.86
409 412 0.668535 AGCGAAGTTTTGTGGAAGCC 59.331 50.000 0.00 0.00 0.00 4.35
439 444 3.934391 GAGGTCTGGCGTTGGTCGG 62.934 68.421 0.00 0.00 40.26 4.79
525 530 0.387929 TTGTCTTCGGACTTGCTCGT 59.612 50.000 0.00 0.00 44.70 4.18
537 542 0.391793 TTGCTCGTGTGTGGTGTTCA 60.392 50.000 0.00 0.00 0.00 3.18
543 548 2.076100 CGTGTGTGGTGTTCATGCTAT 58.924 47.619 0.00 0.00 0.00 2.97
559 564 2.069273 GCTATGCTCGTTGTTCACAGT 58.931 47.619 0.00 0.00 0.00 3.55
614 874 4.148348 GCCTTCATAAAGCTACGATACGTG 59.852 45.833 0.00 0.00 41.39 4.49
618 878 5.993891 TCATAAAGCTACGATACGTGTAGG 58.006 41.667 12.04 0.00 41.39 3.18
620 880 6.705825 TCATAAAGCTACGATACGTGTAGGTA 59.294 38.462 14.33 6.21 46.65 3.08
629 889 6.283694 ACGATACGTGTAGGTATACTCTGAA 58.716 40.000 0.00 0.00 39.18 3.02
761 1412 5.060446 GTGATTGTGCGCCAAAGTATTTTAC 59.940 40.000 13.95 0.00 35.03 2.01
857 1508 1.457303 GTGCTTCAGTTCAGTGCTACG 59.543 52.381 0.00 0.00 0.00 3.51
894 1547 5.687780 ACTCCATTATTTTAAGGTACCGGG 58.312 41.667 6.32 0.00 0.00 5.73
917 3327 4.156739 GGTAGTTGGGATTTGCTTCTTCTG 59.843 45.833 0.00 0.00 0.00 3.02
918 3328 2.560105 AGTTGGGATTTGCTTCTTCTGC 59.440 45.455 0.00 0.00 0.00 4.26
955 3365 0.242825 CCACGAGCTTCAGTTCCGTA 59.757 55.000 0.00 0.00 0.00 4.02
956 3366 1.135083 CCACGAGCTTCAGTTCCGTAT 60.135 52.381 0.00 0.00 0.00 3.06
992 3423 1.579932 CAGCACTCCAAAGCAGCAG 59.420 57.895 0.00 0.00 31.25 4.24
1178 3620 3.730761 CTCGGTCGTTCGGTCGGT 61.731 66.667 7.76 0.00 0.00 4.69
1618 4082 0.035915 GAGGTGCCAGGAGAAAGACC 60.036 60.000 0.00 0.00 0.00 3.85
1623 4087 1.296715 CCAGGAGAAAGACCACGGG 59.703 63.158 0.00 0.00 0.00 5.28
1671 4138 1.509463 CAGGTGCTTCGGCGTAGTA 59.491 57.895 14.95 7.84 45.37 1.82
1829 4304 4.697756 CCGTTGGCTGGGCTCGAA 62.698 66.667 11.59 0.00 0.00 3.71
2477 5037 1.471964 GCTGAGATGTAGCGTCTTCG 58.528 55.000 0.00 0.00 40.37 3.79
2478 5038 1.202200 GCTGAGATGTAGCGTCTTCGT 60.202 52.381 0.00 0.00 39.49 3.85
2479 5039 2.445316 CTGAGATGTAGCGTCTTCGTG 58.555 52.381 0.00 0.00 39.49 4.35
2480 5040 1.132453 TGAGATGTAGCGTCTTCGTGG 59.868 52.381 0.00 0.00 39.49 4.94
2481 5041 1.132643 GAGATGTAGCGTCTTCGTGGT 59.867 52.381 0.00 0.00 39.49 4.16
2484 5045 3.380637 AGATGTAGCGTCTTCGTGGTATT 59.619 43.478 0.00 0.00 39.49 1.89
2496 5057 3.888583 TCGTGGTATTTGGTATTTCCCC 58.111 45.455 0.00 0.00 34.77 4.81
2536 5115 0.538118 ACCGGCCGCTTAATCTGTTA 59.462 50.000 22.85 0.00 0.00 2.41
2538 5197 1.531149 CCGGCCGCTTAATCTGTTATG 59.469 52.381 22.85 0.00 0.00 1.90
2539 5198 2.210116 CGGCCGCTTAATCTGTTATGT 58.790 47.619 14.67 0.00 0.00 2.29
2540 5199 3.386486 CGGCCGCTTAATCTGTTATGTA 58.614 45.455 14.67 0.00 0.00 2.29
2560 5219 6.382919 TGTAGTATTTCCCTTTGCCTACTT 57.617 37.500 0.00 0.00 0.00 2.24
2570 5229 6.018469 TCCCTTTGCCTACTTAACTAGTGTA 58.982 40.000 0.00 0.00 37.73 2.90
2627 5286 5.888105 GCATCTGCATTTACATTTGTCTCT 58.112 37.500 0.00 0.00 41.59 3.10
2629 5288 5.300969 TCTGCATTTACATTTGTCTCTGC 57.699 39.130 0.00 0.00 0.00 4.26
2630 5289 4.761227 TCTGCATTTACATTTGTCTCTGCA 59.239 37.500 11.20 11.20 35.64 4.41
2631 5290 4.797471 TGCATTTACATTTGTCTCTGCAC 58.203 39.130 8.85 0.00 33.60 4.57
2632 5291 3.848019 GCATTTACATTTGTCTCTGCACG 59.152 43.478 0.00 0.00 0.00 5.34
2701 5368 1.209504 TCGAAACATCACCATCTCCCC 59.790 52.381 0.00 0.00 0.00 4.81
2734 5401 6.951530 CGAAATGCAAAAGCAGAATTTGTATG 59.048 34.615 0.00 0.00 40.61 2.39
2741 5408 7.756722 GCAAAAGCAGAATTTGTATGTCTGTAT 59.243 33.333 0.00 0.00 40.76 2.29
2742 5409 9.630098 CAAAAGCAGAATTTGTATGTCTGTATT 57.370 29.630 0.00 0.00 40.76 1.89
2743 5410 9.630098 AAAAGCAGAATTTGTATGTCTGTATTG 57.370 29.630 0.00 0.00 40.76 1.90
2744 5411 6.789262 AGCAGAATTTGTATGTCTGTATTGC 58.211 36.000 0.00 0.00 40.76 3.56
2745 5412 6.375174 AGCAGAATTTGTATGTCTGTATTGCA 59.625 34.615 0.00 0.00 40.76 4.08
2746 5413 6.690098 GCAGAATTTGTATGTCTGTATTGCAG 59.310 38.462 0.00 0.00 46.34 4.41
2747 5414 7.191551 CAGAATTTGTATGTCTGTATTGCAGG 58.808 38.462 1.75 0.00 45.08 4.85
2748 5415 6.886459 AGAATTTGTATGTCTGTATTGCAGGT 59.114 34.615 1.75 0.00 45.08 4.00
2749 5416 7.394359 AGAATTTGTATGTCTGTATTGCAGGTT 59.606 33.333 1.75 0.00 45.08 3.50
2750 5417 5.878332 TTGTATGTCTGTATTGCAGGTTG 57.122 39.130 1.75 0.00 45.08 3.77
2751 5418 4.905429 TGTATGTCTGTATTGCAGGTTGT 58.095 39.130 1.75 0.00 45.08 3.32
2752 5419 5.312895 TGTATGTCTGTATTGCAGGTTGTT 58.687 37.500 1.75 0.00 45.08 2.83
2753 5420 6.468543 TGTATGTCTGTATTGCAGGTTGTTA 58.531 36.000 1.75 0.00 45.08 2.41
2754 5421 5.880054 ATGTCTGTATTGCAGGTTGTTAC 57.120 39.130 1.75 0.00 45.08 2.50
2755 5422 3.743911 TGTCTGTATTGCAGGTTGTTACG 59.256 43.478 1.75 0.00 45.08 3.18
2756 5423 2.739913 TCTGTATTGCAGGTTGTTACGC 59.260 45.455 1.75 0.00 45.08 4.42
2757 5424 1.807742 TGTATTGCAGGTTGTTACGCC 59.192 47.619 0.00 0.00 0.00 5.68
2758 5425 1.807742 GTATTGCAGGTTGTTACGCCA 59.192 47.619 0.00 0.00 0.00 5.69
2759 5426 1.323412 ATTGCAGGTTGTTACGCCAA 58.677 45.000 0.00 0.00 0.00 4.52
2760 5427 1.103803 TTGCAGGTTGTTACGCCAAA 58.896 45.000 0.00 0.00 0.00 3.28
2761 5428 1.103803 TGCAGGTTGTTACGCCAAAA 58.896 45.000 0.00 0.00 0.00 2.44
2762 5429 1.066303 TGCAGGTTGTTACGCCAAAAG 59.934 47.619 0.00 0.00 0.00 2.27
2763 5430 1.766069 CAGGTTGTTACGCCAAAAGC 58.234 50.000 0.00 0.00 38.52 3.51
2764 5431 1.336755 CAGGTTGTTACGCCAAAAGCT 59.663 47.619 0.00 0.00 40.39 3.74
2765 5432 1.336755 AGGTTGTTACGCCAAAAGCTG 59.663 47.619 0.00 0.00 40.39 4.24
2766 5433 1.335496 GGTTGTTACGCCAAAAGCTGA 59.665 47.619 0.00 0.00 40.39 4.26
2767 5434 2.381589 GTTGTTACGCCAAAAGCTGAC 58.618 47.619 0.00 0.00 40.39 3.51
2768 5435 1.961793 TGTTACGCCAAAAGCTGACT 58.038 45.000 0.00 0.00 40.39 3.41
2769 5436 2.294074 TGTTACGCCAAAAGCTGACTT 58.706 42.857 0.00 0.00 40.39 3.01
2771 5438 3.242936 TGTTACGCCAAAAGCTGACTTTC 60.243 43.478 0.00 0.00 45.48 2.62
2772 5439 0.307760 ACGCCAAAAGCTGACTTTCG 59.692 50.000 0.00 0.00 45.48 3.46
2773 5440 0.586319 CGCCAAAAGCTGACTTTCGA 59.414 50.000 0.00 0.00 45.48 3.71
2774 5441 1.197721 CGCCAAAAGCTGACTTTCGAT 59.802 47.619 0.00 0.00 45.48 3.59
2775 5442 2.726066 CGCCAAAAGCTGACTTTCGATC 60.726 50.000 0.00 0.00 45.48 3.69
2776 5443 2.226437 GCCAAAAGCTGACTTTCGATCA 59.774 45.455 0.00 0.00 45.48 2.92
2777 5444 3.669023 GCCAAAAGCTGACTTTCGATCAG 60.669 47.826 9.67 9.67 45.48 2.90
2778 5445 3.748048 CCAAAAGCTGACTTTCGATCAGA 59.252 43.478 16.77 0.00 45.48 3.27
2779 5446 4.214119 CCAAAAGCTGACTTTCGATCAGAA 59.786 41.667 16.77 0.00 45.48 3.02
2780 5447 5.106396 CCAAAAGCTGACTTTCGATCAGAAT 60.106 40.000 16.77 3.43 45.48 2.40
2781 5448 5.793026 AAAGCTGACTTTCGATCAGAATC 57.207 39.130 16.77 1.61 45.46 2.52
2782 5449 3.791245 AGCTGACTTTCGATCAGAATCC 58.209 45.455 16.77 1.30 45.46 3.01
2783 5450 3.450457 AGCTGACTTTCGATCAGAATCCT 59.550 43.478 16.77 3.35 45.46 3.24
2784 5451 3.801594 GCTGACTTTCGATCAGAATCCTC 59.198 47.826 16.77 0.00 45.46 3.71
2785 5452 4.367450 CTGACTTTCGATCAGAATCCTCC 58.633 47.826 8.54 0.00 45.46 4.30
2786 5453 3.769300 TGACTTTCGATCAGAATCCTCCA 59.231 43.478 0.00 0.00 38.86 3.86
2787 5454 4.222810 TGACTTTCGATCAGAATCCTCCAA 59.777 41.667 0.00 0.00 38.86 3.53
2788 5455 5.165961 ACTTTCGATCAGAATCCTCCAAA 57.834 39.130 0.00 0.00 38.86 3.28
2789 5456 5.181748 ACTTTCGATCAGAATCCTCCAAAG 58.818 41.667 0.00 0.00 38.86 2.77
2790 5457 5.046304 ACTTTCGATCAGAATCCTCCAAAGA 60.046 40.000 0.00 0.00 38.86 2.52
2791 5458 5.620738 TTCGATCAGAATCCTCCAAAGAT 57.379 39.130 0.00 0.00 33.14 2.40
2792 5459 4.953667 TCGATCAGAATCCTCCAAAGATG 58.046 43.478 0.00 0.00 0.00 2.90
2793 5460 5.685861 TTCGATCAGAATCCTCCAAAGATGG 60.686 44.000 0.00 0.00 40.06 3.51
2803 5470 2.773993 CCAAAGATGGCTTGGCAAAT 57.226 45.000 0.00 0.00 40.58 2.32
2804 5471 3.062122 CCAAAGATGGCTTGGCAAATT 57.938 42.857 0.00 0.00 40.58 1.82
2805 5472 3.414269 CCAAAGATGGCTTGGCAAATTT 58.586 40.909 0.00 3.01 40.58 1.82
2806 5473 3.822167 CCAAAGATGGCTTGGCAAATTTT 59.178 39.130 0.00 0.44 40.58 1.82
2807 5474 4.083164 CCAAAGATGGCTTGGCAAATTTTC 60.083 41.667 0.00 0.00 40.58 2.29
2808 5475 4.628963 AAGATGGCTTGGCAAATTTTCT 57.371 36.364 0.00 0.00 31.83 2.52
2809 5476 4.198028 AGATGGCTTGGCAAATTTTCTC 57.802 40.909 0.00 0.00 0.00 2.87
2810 5477 3.579586 AGATGGCTTGGCAAATTTTCTCA 59.420 39.130 0.00 0.00 0.00 3.27
2811 5478 4.224370 AGATGGCTTGGCAAATTTTCTCAT 59.776 37.500 0.00 0.00 0.00 2.90
2812 5479 3.929094 TGGCTTGGCAAATTTTCTCATC 58.071 40.909 0.00 0.00 0.00 2.92
2813 5480 3.324268 TGGCTTGGCAAATTTTCTCATCA 59.676 39.130 0.00 0.00 0.00 3.07
2814 5481 3.930848 GGCTTGGCAAATTTTCTCATCAG 59.069 43.478 0.00 0.00 0.00 2.90
2815 5482 4.322198 GGCTTGGCAAATTTTCTCATCAGA 60.322 41.667 0.00 0.00 0.00 3.27
2816 5483 4.624452 GCTTGGCAAATTTTCTCATCAGAC 59.376 41.667 0.00 0.00 0.00 3.51
2817 5484 4.789012 TGGCAAATTTTCTCATCAGACC 57.211 40.909 0.00 0.00 0.00 3.85
2818 5485 4.151121 TGGCAAATTTTCTCATCAGACCA 58.849 39.130 0.00 0.00 0.00 4.02
2819 5486 4.588106 TGGCAAATTTTCTCATCAGACCAA 59.412 37.500 0.00 0.00 0.00 3.67
2820 5487 4.925646 GGCAAATTTTCTCATCAGACCAAC 59.074 41.667 0.00 0.00 0.00 3.77
2821 5488 5.279156 GGCAAATTTTCTCATCAGACCAACT 60.279 40.000 0.00 0.00 0.00 3.16
2822 5489 5.860716 GCAAATTTTCTCATCAGACCAACTC 59.139 40.000 0.00 0.00 0.00 3.01
2823 5490 6.385033 CAAATTTTCTCATCAGACCAACTCC 58.615 40.000 0.00 0.00 0.00 3.85
2824 5491 4.705110 TTTTCTCATCAGACCAACTCCA 57.295 40.909 0.00 0.00 0.00 3.86
2825 5492 3.969287 TTCTCATCAGACCAACTCCAG 57.031 47.619 0.00 0.00 0.00 3.86
2826 5493 1.552337 TCTCATCAGACCAACTCCAGC 59.448 52.381 0.00 0.00 0.00 4.85
2827 5494 1.277273 CTCATCAGACCAACTCCAGCA 59.723 52.381 0.00 0.00 0.00 4.41
2828 5495 1.002430 TCATCAGACCAACTCCAGCAC 59.998 52.381 0.00 0.00 0.00 4.40
2829 5496 1.059098 ATCAGACCAACTCCAGCACA 58.941 50.000 0.00 0.00 0.00 4.57
2830 5497 1.059098 TCAGACCAACTCCAGCACAT 58.941 50.000 0.00 0.00 0.00 3.21
2831 5498 1.002430 TCAGACCAACTCCAGCACATC 59.998 52.381 0.00 0.00 0.00 3.06
2832 5499 0.326264 AGACCAACTCCAGCACATCC 59.674 55.000 0.00 0.00 0.00 3.51
2833 5500 0.036732 GACCAACTCCAGCACATCCA 59.963 55.000 0.00 0.00 0.00 3.41
2834 5501 0.478072 ACCAACTCCAGCACATCCAA 59.522 50.000 0.00 0.00 0.00 3.53
2835 5502 1.133513 ACCAACTCCAGCACATCCAAA 60.134 47.619 0.00 0.00 0.00 3.28
2836 5503 1.270550 CCAACTCCAGCACATCCAAAC 59.729 52.381 0.00 0.00 0.00 2.93
2837 5504 1.955778 CAACTCCAGCACATCCAAACA 59.044 47.619 0.00 0.00 0.00 2.83
2838 5505 2.559668 CAACTCCAGCACATCCAAACAT 59.440 45.455 0.00 0.00 0.00 2.71
2839 5506 3.719268 ACTCCAGCACATCCAAACATA 57.281 42.857 0.00 0.00 0.00 2.29
2840 5507 3.347216 ACTCCAGCACATCCAAACATAC 58.653 45.455 0.00 0.00 0.00 2.39
2841 5508 3.244875 ACTCCAGCACATCCAAACATACA 60.245 43.478 0.00 0.00 0.00 2.29
2842 5509 3.081061 TCCAGCACATCCAAACATACAC 58.919 45.455 0.00 0.00 0.00 2.90
2843 5510 2.159531 CCAGCACATCCAAACATACACG 60.160 50.000 0.00 0.00 0.00 4.49
2844 5511 2.083774 AGCACATCCAAACATACACGG 58.916 47.619 0.00 0.00 0.00 4.94
2845 5512 1.132262 GCACATCCAAACATACACGGG 59.868 52.381 0.00 0.00 0.00 5.28
2846 5513 2.432444 CACATCCAAACATACACGGGT 58.568 47.619 0.00 0.00 0.00 5.28
2847 5514 2.817258 CACATCCAAACATACACGGGTT 59.183 45.455 0.00 0.00 0.00 4.11
2848 5515 3.254657 CACATCCAAACATACACGGGTTT 59.745 43.478 0.00 0.00 37.69 3.27
2849 5516 3.892588 ACATCCAAACATACACGGGTTTT 59.107 39.130 0.00 0.00 35.17 2.43
2850 5517 3.992260 TCCAAACATACACGGGTTTTG 57.008 42.857 0.00 0.00 35.17 2.44
2851 5518 3.288964 TCCAAACATACACGGGTTTTGT 58.711 40.909 11.42 6.50 35.17 2.83
2852 5519 3.315749 TCCAAACATACACGGGTTTTGTC 59.684 43.478 11.42 0.00 35.17 3.18
2853 5520 3.551250 CCAAACATACACGGGTTTTGTCC 60.551 47.826 11.42 0.00 35.17 4.02
2854 5521 1.900245 ACATACACGGGTTTTGTCCC 58.100 50.000 0.00 0.00 43.78 4.46
2855 5522 1.422402 ACATACACGGGTTTTGTCCCT 59.578 47.619 0.00 0.00 44.95 4.20
2856 5523 2.081462 CATACACGGGTTTTGTCCCTC 58.919 52.381 0.00 0.00 44.95 4.30
2857 5524 1.426751 TACACGGGTTTTGTCCCTCT 58.573 50.000 0.00 0.00 44.95 3.69
2858 5525 0.549469 ACACGGGTTTTGTCCCTCTT 59.451 50.000 0.00 0.00 44.95 2.85
2859 5526 1.064240 ACACGGGTTTTGTCCCTCTTT 60.064 47.619 0.00 0.00 44.95 2.52
2860 5527 2.028876 CACGGGTTTTGTCCCTCTTTT 58.971 47.619 0.25 0.00 44.95 2.27
2861 5528 2.028876 ACGGGTTTTGTCCCTCTTTTG 58.971 47.619 0.25 0.00 44.95 2.44
2862 5529 2.028876 CGGGTTTTGTCCCTCTTTTGT 58.971 47.619 0.25 0.00 44.95 2.83
2863 5530 2.429250 CGGGTTTTGTCCCTCTTTTGTT 59.571 45.455 0.25 0.00 44.95 2.83
2864 5531 3.490249 CGGGTTTTGTCCCTCTTTTGTTC 60.490 47.826 0.25 0.00 44.95 3.18
2865 5532 3.449377 GGGTTTTGTCCCTCTTTTGTTCA 59.551 43.478 0.00 0.00 43.85 3.18
2866 5533 4.100963 GGGTTTTGTCCCTCTTTTGTTCAT 59.899 41.667 0.00 0.00 43.85 2.57
2867 5534 5.396324 GGGTTTTGTCCCTCTTTTGTTCATT 60.396 40.000 0.00 0.00 43.85 2.57
2868 5535 5.753438 GGTTTTGTCCCTCTTTTGTTCATTC 59.247 40.000 0.00 0.00 0.00 2.67
2869 5536 4.829064 TTGTCCCTCTTTTGTTCATTCG 57.171 40.909 0.00 0.00 0.00 3.34
2870 5537 3.146066 TGTCCCTCTTTTGTTCATTCGG 58.854 45.455 0.00 0.00 0.00 4.30
2871 5538 2.488153 GTCCCTCTTTTGTTCATTCGGG 59.512 50.000 0.00 0.00 0.00 5.14
2872 5539 2.107552 TCCCTCTTTTGTTCATTCGGGT 59.892 45.455 0.00 0.00 0.00 5.28
2873 5540 2.488153 CCCTCTTTTGTTCATTCGGGTC 59.512 50.000 0.00 0.00 0.00 4.46
2874 5541 3.146066 CCTCTTTTGTTCATTCGGGTCA 58.854 45.455 0.00 0.00 0.00 4.02
2875 5542 3.189287 CCTCTTTTGTTCATTCGGGTCAG 59.811 47.826 0.00 0.00 0.00 3.51
2876 5543 2.552315 TCTTTTGTTCATTCGGGTCAGC 59.448 45.455 0.00 0.00 0.00 4.26
2877 5544 2.270352 TTTGTTCATTCGGGTCAGCT 57.730 45.000 0.00 0.00 0.00 4.24
2878 5545 1.522668 TTGTTCATTCGGGTCAGCTG 58.477 50.000 7.63 7.63 0.00 4.24
2879 5546 0.955428 TGTTCATTCGGGTCAGCTGC 60.955 55.000 9.47 4.04 0.00 5.25
2880 5547 1.377202 TTCATTCGGGTCAGCTGCC 60.377 57.895 9.47 13.62 0.00 4.85
2881 5548 2.819984 TTCATTCGGGTCAGCTGCCC 62.820 60.000 27.18 27.18 42.68 5.36
2898 5565 4.695231 CGCGTCGTCTGGTCCGTT 62.695 66.667 0.00 0.00 0.00 4.44
2899 5566 2.355481 GCGTCGTCTGGTCCGTTT 60.355 61.111 0.00 0.00 0.00 3.60
2900 5567 1.952635 GCGTCGTCTGGTCCGTTTT 60.953 57.895 0.00 0.00 0.00 2.43
2901 5568 1.850640 CGTCGTCTGGTCCGTTTTG 59.149 57.895 0.00 0.00 0.00 2.44
2902 5569 0.872881 CGTCGTCTGGTCCGTTTTGT 60.873 55.000 0.00 0.00 0.00 2.83
2903 5570 0.580104 GTCGTCTGGTCCGTTTTGTG 59.420 55.000 0.00 0.00 0.00 3.33
2904 5571 0.176219 TCGTCTGGTCCGTTTTGTGT 59.824 50.000 0.00 0.00 0.00 3.72
2905 5572 1.011333 CGTCTGGTCCGTTTTGTGTT 58.989 50.000 0.00 0.00 0.00 3.32
2906 5573 1.399089 CGTCTGGTCCGTTTTGTGTTT 59.601 47.619 0.00 0.00 0.00 2.83
2907 5574 2.789779 CGTCTGGTCCGTTTTGTGTTTG 60.790 50.000 0.00 0.00 0.00 2.93
2908 5575 1.746220 TCTGGTCCGTTTTGTGTTTGG 59.254 47.619 0.00 0.00 0.00 3.28
2909 5576 0.818296 TGGTCCGTTTTGTGTTTGGG 59.182 50.000 0.00 0.00 0.00 4.12
2910 5577 0.818938 GGTCCGTTTTGTGTTTGGGT 59.181 50.000 0.00 0.00 0.00 4.51
2911 5578 1.202325 GGTCCGTTTTGTGTTTGGGTC 60.202 52.381 0.00 0.00 0.00 4.46
2912 5579 0.733729 TCCGTTTTGTGTTTGGGTCG 59.266 50.000 0.00 0.00 0.00 4.79
2913 5580 0.248702 CCGTTTTGTGTTTGGGTCGG 60.249 55.000 0.00 0.00 0.00 4.79
2914 5581 0.868177 CGTTTTGTGTTTGGGTCGGC 60.868 55.000 0.00 0.00 0.00 5.54
2915 5582 0.528901 GTTTTGTGTTTGGGTCGGCC 60.529 55.000 0.00 0.00 0.00 6.13
2916 5583 2.005960 TTTTGTGTTTGGGTCGGCCG 62.006 55.000 22.12 22.12 34.97 6.13
2917 5584 3.700831 TTGTGTTTGGGTCGGCCGT 62.701 57.895 27.15 0.00 34.97 5.68
2918 5585 3.656045 GTGTTTGGGTCGGCCGTG 61.656 66.667 27.15 0.00 34.97 4.94
2931 5598 3.659092 CCGTGCGCACACCACATT 61.659 61.111 37.03 0.00 44.40 2.71
2932 5599 2.331098 CGTGCGCACACCACATTT 59.669 55.556 37.03 0.00 44.40 2.32
2933 5600 1.299014 CGTGCGCACACCACATTTT 60.299 52.632 37.03 0.00 44.40 1.82
2934 5601 0.869454 CGTGCGCACACCACATTTTT 60.869 50.000 37.03 0.00 44.40 1.94
2935 5602 0.576328 GTGCGCACACCACATTTTTG 59.424 50.000 34.52 0.00 41.21 2.44
2936 5603 0.174389 TGCGCACACCACATTTTTGT 59.826 45.000 5.66 0.00 0.00 2.83
2937 5604 0.852136 GCGCACACCACATTTTTGTC 59.148 50.000 0.30 0.00 0.00 3.18
2938 5605 1.486439 CGCACACCACATTTTTGTCC 58.514 50.000 0.00 0.00 0.00 4.02
2939 5606 1.066908 CGCACACCACATTTTTGTCCT 59.933 47.619 0.00 0.00 0.00 3.85
2940 5607 2.742774 GCACACCACATTTTTGTCCTC 58.257 47.619 0.00 0.00 0.00 3.71
2941 5608 2.100584 GCACACCACATTTTTGTCCTCA 59.899 45.455 0.00 0.00 0.00 3.86
2942 5609 3.705604 CACACCACATTTTTGTCCTCAC 58.294 45.455 0.00 0.00 0.00 3.51
2943 5610 2.357637 ACACCACATTTTTGTCCTCACG 59.642 45.455 0.00 0.00 0.00 4.35
2944 5611 1.953686 ACCACATTTTTGTCCTCACGG 59.046 47.619 0.00 0.00 0.00 4.94
2945 5612 1.335872 CCACATTTTTGTCCTCACGGC 60.336 52.381 0.00 0.00 0.00 5.68
2946 5613 0.958822 ACATTTTTGTCCTCACGGCC 59.041 50.000 0.00 0.00 0.00 6.13
2947 5614 0.958091 CATTTTTGTCCTCACGGCCA 59.042 50.000 2.24 0.00 0.00 5.36
2948 5615 1.068333 CATTTTTGTCCTCACGGCCAG 60.068 52.381 2.24 0.00 0.00 4.85
2949 5616 1.452145 TTTTTGTCCTCACGGCCAGC 61.452 55.000 2.24 0.00 0.00 4.85
2950 5617 3.842925 TTTGTCCTCACGGCCAGCC 62.843 63.158 2.24 0.00 0.00 4.85
2952 5619 4.767255 GTCCTCACGGCCAGCCTG 62.767 72.222 2.24 4.59 0.00 4.85
2961 5628 3.605664 GCCAGCCTGCCGTGTTTT 61.606 61.111 0.00 0.00 0.00 2.43
2962 5629 3.128375 CCAGCCTGCCGTGTTTTT 58.872 55.556 0.00 0.00 0.00 1.94
3004 5671 8.728088 AAATTTGACGACAGTTCACATAATTC 57.272 30.769 0.00 0.00 0.00 2.17
3013 5680 8.967218 CGACAGTTCACATAATTCAAACAAAAT 58.033 29.630 0.00 0.00 0.00 1.82
3125 5796 9.832445 AAAATAGTCGATACATCTATTGGTTGT 57.168 29.630 6.13 0.00 35.46 3.32
3126 5797 9.832445 AAATAGTCGATACATCTATTGGTTGTT 57.168 29.630 6.13 0.00 35.46 2.83
3130 5801 7.434307 AGTCGATACATCTATTGGTTGTTAACG 59.566 37.037 0.26 0.00 0.00 3.18
3143 5814 3.620427 TGTTAACGTGAGCCCACATAT 57.380 42.857 0.00 0.00 43.34 1.78
3144 5815 3.945346 TGTTAACGTGAGCCCACATATT 58.055 40.909 0.00 0.00 43.34 1.28
3150 5821 2.868583 CGTGAGCCCACATATTCTCAAG 59.131 50.000 0.00 0.00 43.34 3.02
3151 5822 3.679917 CGTGAGCCCACATATTCTCAAGT 60.680 47.826 0.00 0.00 43.34 3.16
3163 5834 9.661187 CACATATTCTCAAGTAAATCATCTTGC 57.339 33.333 0.00 0.00 40.27 4.01
3166 5837 5.808042 TCTCAAGTAAATCATCTTGCAGC 57.192 39.130 0.00 0.00 40.27 5.25
3181 5852 4.098349 TCTTGCAGCTGAATGTGAGTTTTT 59.902 37.500 20.43 0.00 0.00 1.94
3224 5895 1.745232 TTCGGTGAACTGTGCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
3244 5915 4.554036 GCCGGTCCTCCATGCTCC 62.554 72.222 1.90 0.00 0.00 4.70
3245 5916 3.083349 CCGGTCCTCCATGCTCCA 61.083 66.667 0.00 0.00 0.00 3.86
3246 5917 2.669133 CCGGTCCTCCATGCTCCAA 61.669 63.158 0.00 0.00 0.00 3.53
3247 5918 1.153289 CGGTCCTCCATGCTCCAAG 60.153 63.158 0.00 0.00 0.00 3.61
3255 6869 2.503356 CTCCATGCTCCAAGTAGTCCTT 59.497 50.000 0.00 0.00 0.00 3.36
3266 6880 4.570079 CCAAGTAGTCCTTCCAGAGTAGGA 60.570 50.000 0.00 0.00 37.24 2.94
3272 6886 2.505819 TCCTTCCAGAGTAGGAAATGGC 59.494 50.000 0.00 0.00 46.44 4.40
3274 6888 1.965414 TCCAGAGTAGGAAATGGCCA 58.035 50.000 8.56 8.56 33.93 5.36
3276 6890 1.656652 CAGAGTAGGAAATGGCCACG 58.343 55.000 8.16 0.00 0.00 4.94
3279 6893 0.107654 AGTAGGAAATGGCCACGCTC 60.108 55.000 8.16 4.55 0.00 5.03
3282 6896 2.464459 GGAAATGGCCACGCTCTCG 61.464 63.158 8.16 0.00 42.43 4.04
3293 6907 1.059369 CGCTCTCGGTTGCAATTCG 59.941 57.895 15.86 15.86 0.00 3.34
3295 6909 0.095417 GCTCTCGGTTGCAATTCGAC 59.905 55.000 19.19 9.82 0.00 4.20
3296 6910 1.428448 CTCTCGGTTGCAATTCGACA 58.572 50.000 19.19 11.53 0.00 4.35
3298 6912 0.165944 CTCGGTTGCAATTCGACACC 59.834 55.000 19.19 7.45 0.00 4.16
3299 6913 1.154488 CGGTTGCAATTCGACACCG 60.154 57.895 16.69 13.27 37.07 4.94
3337 6953 4.215742 CCGGAACATCGGCCGCTA 62.216 66.667 23.51 4.04 45.93 4.26
3343 6959 1.324740 AACATCGGCCGCTACCTACA 61.325 55.000 23.51 0.00 0.00 2.74
3344 6960 1.113517 ACATCGGCCGCTACCTACAT 61.114 55.000 23.51 2.39 0.00 2.29
3358 6995 4.342862 ACCTACATATAGCAGCCACAAG 57.657 45.455 0.00 0.00 0.00 3.16
3359 6996 3.070018 CCTACATATAGCAGCCACAAGC 58.930 50.000 0.00 0.00 44.25 4.01
3368 7005 2.743928 GCCACAAGCTCCTCACCG 60.744 66.667 0.00 0.00 38.99 4.94
3370 7007 1.374758 CCACAAGCTCCTCACCGTC 60.375 63.158 0.00 0.00 0.00 4.79
3394 7031 1.124462 GAAGAATCATCCGAGTCGCG 58.876 55.000 7.12 0.00 41.15 5.87
3399 7036 0.385751 ATCATCCGAGTCGCGAATGT 59.614 50.000 16.27 0.00 44.57 2.71
3403 7040 2.115348 TCCGAGTCGCGAATGTAATC 57.885 50.000 16.27 0.00 44.57 1.75
3404 7041 0.770590 CCGAGTCGCGAATGTAATCG 59.229 55.000 16.27 10.97 44.57 3.34
3439 7076 2.344025 GTCGGTGGAGTCCATTTGTAC 58.656 52.381 16.67 6.27 35.28 2.90
3452 7089 2.880963 TTTGTACCTTGCAGGCAAAC 57.119 45.000 8.20 4.45 39.63 2.93
3457 7094 2.252260 CTTGCAGGCAAACCGTCG 59.748 61.111 8.20 0.00 42.76 5.12
3462 7099 1.569493 CAGGCAAACCGTCGAACAG 59.431 57.895 0.00 0.00 42.76 3.16
3468 7105 1.092921 AAACCGTCGAACAGCTTGCA 61.093 50.000 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 0.105964 CGGAGACAACCACCAACTCA 59.894 55.000 0.00 0.00 0.00 3.41
142 144 2.060284 CCATTGTGCCAATTCAACACG 58.940 47.619 0.00 0.00 37.11 4.49
190 192 1.251251 GCTCCAAACACAATGCTCCT 58.749 50.000 0.00 0.00 0.00 3.69
294 296 1.299541 CACACTGTCTTGGACACACC 58.700 55.000 0.00 0.00 37.67 4.16
308 310 1.709578 TCAGCTCTGAGGAACACACT 58.290 50.000 6.83 0.00 34.14 3.55
320 322 0.820871 GACGGGACTTGATCAGCTCT 59.179 55.000 0.00 0.00 0.00 4.09
409 412 0.320771 CAGACCTCCAAAGACCACCG 60.321 60.000 0.00 0.00 0.00 4.94
439 444 1.886861 CTGAGCACAACACCGCGTAC 61.887 60.000 4.92 0.00 0.00 3.67
525 530 1.811965 GCATAGCATGAACACCACACA 59.188 47.619 0.00 0.00 0.00 3.72
537 542 2.674852 CTGTGAACAACGAGCATAGCAT 59.325 45.455 0.00 0.00 0.00 3.79
543 548 1.570813 CTCACTGTGAACAACGAGCA 58.429 50.000 12.16 0.00 0.00 4.26
606 866 6.775939 TTCAGAGTATACCTACACGTATCG 57.224 41.667 0.00 0.00 31.42 2.92
636 898 3.877559 CATGGGCAAATCAGAGAGTACA 58.122 45.455 0.00 0.00 0.00 2.90
724 986 3.803555 CACAATCACTCAAGTTCTTCGC 58.196 45.455 0.00 0.00 0.00 4.70
857 1508 2.507407 TGGAGTCAATTTGGGTAGCC 57.493 50.000 3.29 3.29 0.00 3.93
894 1547 4.156739 CAGAAGAAGCAAATCCCAACTACC 59.843 45.833 0.00 0.00 0.00 3.18
918 3328 3.474904 TTTGCGACGTCGATGCCG 61.475 61.111 39.74 15.09 43.02 5.69
955 3365 1.885157 CTGCAATGGTGGCGTCAAT 59.115 52.632 0.00 0.00 0.00 2.57
956 3366 2.918345 GCTGCAATGGTGGCGTCAA 61.918 57.895 0.00 0.00 0.00 3.18
992 3423 0.881118 TGTCGAGGCCATTTTCTTGC 59.119 50.000 5.01 0.00 0.00 4.01
1593 4057 1.434188 TCTCCTGGCACCTCAAGAAA 58.566 50.000 0.00 0.00 0.00 2.52
1623 4087 1.442526 CCATGATCGGGCTGCTGAAC 61.443 60.000 0.00 0.00 0.00 3.18
1671 4138 1.416401 AGGTCCATGAACGTGTTGACT 59.584 47.619 0.00 0.00 0.00 3.41
2474 5034 4.271661 GGGGAAATACCAAATACCACGAA 58.728 43.478 0.00 0.00 41.20 3.85
2475 5035 3.682155 CGGGGAAATACCAAATACCACGA 60.682 47.826 0.00 0.00 45.42 4.35
2476 5036 2.614983 CGGGGAAATACCAAATACCACG 59.385 50.000 0.00 0.00 41.20 4.94
2477 5037 3.379057 CACGGGGAAATACCAAATACCAC 59.621 47.826 0.00 0.00 41.20 4.16
2478 5038 3.622630 CACGGGGAAATACCAAATACCA 58.377 45.455 0.00 0.00 41.20 3.25
2479 5039 2.359848 GCACGGGGAAATACCAAATACC 59.640 50.000 0.00 0.00 41.20 2.73
2480 5040 3.284617 AGCACGGGGAAATACCAAATAC 58.715 45.455 0.00 0.00 41.20 1.89
2481 5041 3.655615 AGCACGGGGAAATACCAAATA 57.344 42.857 0.00 0.00 41.20 1.40
2484 5045 1.074084 TGAAGCACGGGGAAATACCAA 59.926 47.619 0.00 0.00 41.20 3.67
2496 5057 3.529634 TTACAAACGGATTGAAGCACG 57.470 42.857 4.92 0.00 41.85 5.34
2536 5115 6.576778 AGTAGGCAAAGGGAAATACTACAT 57.423 37.500 0.00 0.00 33.60 2.29
2538 5197 8.045507 AGTTAAGTAGGCAAAGGGAAATACTAC 58.954 37.037 0.00 0.00 0.00 2.73
2539 5198 8.154420 AGTTAAGTAGGCAAAGGGAAATACTA 57.846 34.615 0.00 0.00 0.00 1.82
2540 5199 7.029053 AGTTAAGTAGGCAAAGGGAAATACT 57.971 36.000 0.00 0.00 0.00 2.12
2570 5229 1.072173 TGCAGTAACAGCAGGTGACAT 59.928 47.619 6.61 0.00 37.02 3.06
2623 5282 0.881796 AACGAGATGACGTGCAGAGA 59.118 50.000 0.00 0.00 45.83 3.10
2624 5283 1.702886 AAACGAGATGACGTGCAGAG 58.297 50.000 0.00 0.00 45.83 3.35
2625 5284 2.148916 AAAACGAGATGACGTGCAGA 57.851 45.000 0.00 0.00 45.83 4.26
2627 5286 1.717113 CGTAAAACGAGATGACGTGCA 59.283 47.619 0.00 0.00 46.05 4.57
2629 5288 1.058695 GGCGTAAAACGAGATGACGTG 59.941 52.381 3.22 0.00 46.05 4.49
2630 5289 1.068055 AGGCGTAAAACGAGATGACGT 60.068 47.619 3.22 0.00 46.05 4.34
2631 5290 1.320555 CAGGCGTAAAACGAGATGACG 59.679 52.381 3.22 0.00 46.05 4.35
2632 5291 1.659098 CCAGGCGTAAAACGAGATGAC 59.341 52.381 3.22 0.00 46.05 3.06
2672 5337 1.531149 GTGATGTTTCGACCAGGTGTG 59.469 52.381 0.00 0.00 0.00 3.82
2676 5341 2.009774 GATGGTGATGTTTCGACCAGG 58.990 52.381 0.00 0.00 42.97 4.45
2701 5368 2.027214 GCTTTTGCATTTCGAATCGCAG 59.973 45.455 18.01 10.72 46.58 5.18
2741 5408 1.103803 TTTGGCGTAACAACCTGCAA 58.896 45.000 0.00 0.00 0.00 4.08
2742 5409 1.066303 CTTTTGGCGTAACAACCTGCA 59.934 47.619 0.00 0.00 0.00 4.41
2743 5410 1.766069 CTTTTGGCGTAACAACCTGC 58.234 50.000 0.00 0.00 0.00 4.85
2744 5411 1.766069 GCTTTTGGCGTAACAACCTG 58.234 50.000 0.00 0.00 0.00 4.00
2747 5414 6.731618 GAAAGTCAGCTTTTGGCGTAACAAC 61.732 44.000 0.00 0.00 44.25 3.32
2748 5415 4.732355 GAAAGTCAGCTTTTGGCGTAACAA 60.732 41.667 0.00 0.00 44.25 2.83
2749 5416 3.242936 GAAAGTCAGCTTTTGGCGTAACA 60.243 43.478 0.00 0.00 44.25 2.41
2750 5417 3.297472 GAAAGTCAGCTTTTGGCGTAAC 58.703 45.455 0.00 0.00 44.25 2.50
2751 5418 2.032377 CGAAAGTCAGCTTTTGGCGTAA 60.032 45.455 0.00 0.00 44.25 3.18
2752 5419 1.529438 CGAAAGTCAGCTTTTGGCGTA 59.471 47.619 0.00 0.00 44.25 4.42
2753 5420 0.307760 CGAAAGTCAGCTTTTGGCGT 59.692 50.000 0.00 0.00 44.25 5.68
2754 5421 0.586319 TCGAAAGTCAGCTTTTGGCG 59.414 50.000 7.29 1.84 44.25 5.69
2755 5422 2.226437 TGATCGAAAGTCAGCTTTTGGC 59.774 45.455 0.00 0.00 44.25 4.52
2756 5423 3.748048 TCTGATCGAAAGTCAGCTTTTGG 59.252 43.478 9.24 0.00 44.25 3.28
2757 5424 4.997905 TCTGATCGAAAGTCAGCTTTTG 57.002 40.909 9.24 0.00 44.25 2.44
2758 5425 5.123027 GGATTCTGATCGAAAGTCAGCTTTT 59.877 40.000 9.24 0.00 44.25 2.27
2759 5426 4.633565 GGATTCTGATCGAAAGTCAGCTTT 59.366 41.667 9.24 0.00 46.63 3.51
2760 5427 4.081198 AGGATTCTGATCGAAAGTCAGCTT 60.081 41.667 9.24 0.47 42.17 3.74
2761 5428 3.450457 AGGATTCTGATCGAAAGTCAGCT 59.550 43.478 9.24 0.62 42.17 4.24
2762 5429 3.791245 AGGATTCTGATCGAAAGTCAGC 58.209 45.455 9.24 0.00 42.17 4.26
2763 5430 4.142071 TGGAGGATTCTGATCGAAAGTCAG 60.142 45.833 8.00 8.00 43.46 3.51
2764 5431 3.769300 TGGAGGATTCTGATCGAAAGTCA 59.231 43.478 0.00 0.00 34.79 3.41
2765 5432 4.392921 TGGAGGATTCTGATCGAAAGTC 57.607 45.455 0.00 0.00 34.79 3.01
2766 5433 4.826274 TTGGAGGATTCTGATCGAAAGT 57.174 40.909 0.00 0.00 34.79 2.66
2767 5434 5.423015 TCTTTGGAGGATTCTGATCGAAAG 58.577 41.667 0.00 6.98 34.79 2.62
2768 5435 5.420725 TCTTTGGAGGATTCTGATCGAAA 57.579 39.130 0.00 0.00 34.79 3.46
2769 5436 5.363101 CATCTTTGGAGGATTCTGATCGAA 58.637 41.667 0.00 3.14 35.78 3.71
2770 5437 4.202295 CCATCTTTGGAGGATTCTGATCGA 60.202 45.833 0.00 0.00 46.92 3.59
2771 5438 4.063689 CCATCTTTGGAGGATTCTGATCG 58.936 47.826 0.00 0.00 46.92 3.69
2772 5439 3.819902 GCCATCTTTGGAGGATTCTGATC 59.180 47.826 0.00 0.00 46.92 2.92
2773 5440 3.462579 AGCCATCTTTGGAGGATTCTGAT 59.537 43.478 0.00 0.00 46.92 2.90
2774 5441 2.848694 AGCCATCTTTGGAGGATTCTGA 59.151 45.455 0.00 0.00 46.92 3.27
2775 5442 3.294038 AGCCATCTTTGGAGGATTCTG 57.706 47.619 0.00 0.00 46.92 3.02
2776 5443 3.626729 CCAAGCCATCTTTGGAGGATTCT 60.627 47.826 0.00 0.00 46.92 2.40
2777 5444 2.692041 CCAAGCCATCTTTGGAGGATTC 59.308 50.000 0.00 0.00 46.92 2.52
2778 5445 2.743553 CCAAGCCATCTTTGGAGGATT 58.256 47.619 0.00 0.00 46.92 3.01
2779 5446 1.687368 GCCAAGCCATCTTTGGAGGAT 60.687 52.381 8.13 0.00 46.92 3.24
2780 5447 0.323725 GCCAAGCCATCTTTGGAGGA 60.324 55.000 8.13 0.00 46.92 3.71
2781 5448 0.612732 TGCCAAGCCATCTTTGGAGG 60.613 55.000 8.13 0.00 46.92 4.30
2782 5449 1.259609 TTGCCAAGCCATCTTTGGAG 58.740 50.000 8.13 0.00 46.92 3.86
2783 5450 1.714541 TTTGCCAAGCCATCTTTGGA 58.285 45.000 8.13 0.00 46.92 3.53
2784 5451 2.773993 ATTTGCCAAGCCATCTTTGG 57.226 45.000 0.00 0.00 46.66 3.28
2785 5452 4.758165 AGAAAATTTGCCAAGCCATCTTTG 59.242 37.500 0.00 0.00 0.00 2.77
2786 5453 4.976864 AGAAAATTTGCCAAGCCATCTTT 58.023 34.783 0.00 0.00 0.00 2.52
2787 5454 4.040706 TGAGAAAATTTGCCAAGCCATCTT 59.959 37.500 0.00 0.00 0.00 2.40
2788 5455 3.579586 TGAGAAAATTTGCCAAGCCATCT 59.420 39.130 0.00 0.00 0.00 2.90
2789 5456 3.929094 TGAGAAAATTTGCCAAGCCATC 58.071 40.909 0.00 0.00 0.00 3.51
2790 5457 4.020039 TGATGAGAAAATTTGCCAAGCCAT 60.020 37.500 0.00 0.00 0.00 4.40
2791 5458 3.324268 TGATGAGAAAATTTGCCAAGCCA 59.676 39.130 0.00 0.00 0.00 4.75
2792 5459 3.929094 TGATGAGAAAATTTGCCAAGCC 58.071 40.909 0.00 0.00 0.00 4.35
2793 5460 4.624452 GTCTGATGAGAAAATTTGCCAAGC 59.376 41.667 0.00 0.00 0.00 4.01
2794 5461 5.166398 GGTCTGATGAGAAAATTTGCCAAG 58.834 41.667 0.00 0.00 0.00 3.61
2795 5462 4.588106 TGGTCTGATGAGAAAATTTGCCAA 59.412 37.500 0.00 0.00 0.00 4.52
2796 5463 4.151121 TGGTCTGATGAGAAAATTTGCCA 58.849 39.130 0.00 0.00 0.00 4.92
2797 5464 4.789012 TGGTCTGATGAGAAAATTTGCC 57.211 40.909 0.00 0.00 0.00 4.52
2798 5465 5.776744 AGTTGGTCTGATGAGAAAATTTGC 58.223 37.500 0.00 0.00 0.00 3.68
2799 5466 6.016024 TGGAGTTGGTCTGATGAGAAAATTTG 60.016 38.462 0.00 0.00 0.00 2.32
2800 5467 6.070656 TGGAGTTGGTCTGATGAGAAAATTT 58.929 36.000 0.00 0.00 0.00 1.82
2801 5468 5.634118 TGGAGTTGGTCTGATGAGAAAATT 58.366 37.500 0.00 0.00 0.00 1.82
2802 5469 5.246981 TGGAGTTGGTCTGATGAGAAAAT 57.753 39.130 0.00 0.00 0.00 1.82
2803 5470 4.645535 CTGGAGTTGGTCTGATGAGAAAA 58.354 43.478 0.00 0.00 0.00 2.29
2804 5471 3.557898 GCTGGAGTTGGTCTGATGAGAAA 60.558 47.826 0.00 0.00 0.00 2.52
2805 5472 2.027745 GCTGGAGTTGGTCTGATGAGAA 60.028 50.000 0.00 0.00 0.00 2.87
2806 5473 1.552337 GCTGGAGTTGGTCTGATGAGA 59.448 52.381 0.00 0.00 0.00 3.27
2807 5474 1.277273 TGCTGGAGTTGGTCTGATGAG 59.723 52.381 0.00 0.00 0.00 2.90
2808 5475 1.002430 GTGCTGGAGTTGGTCTGATGA 59.998 52.381 0.00 0.00 0.00 2.92
2809 5476 1.271001 TGTGCTGGAGTTGGTCTGATG 60.271 52.381 0.00 0.00 0.00 3.07
2810 5477 1.059098 TGTGCTGGAGTTGGTCTGAT 58.941 50.000 0.00 0.00 0.00 2.90
2811 5478 1.002430 GATGTGCTGGAGTTGGTCTGA 59.998 52.381 0.00 0.00 0.00 3.27
2812 5479 1.446907 GATGTGCTGGAGTTGGTCTG 58.553 55.000 0.00 0.00 0.00 3.51
2813 5480 0.326264 GGATGTGCTGGAGTTGGTCT 59.674 55.000 0.00 0.00 0.00 3.85
2814 5481 0.036732 TGGATGTGCTGGAGTTGGTC 59.963 55.000 0.00 0.00 0.00 4.02
2815 5482 0.478072 TTGGATGTGCTGGAGTTGGT 59.522 50.000 0.00 0.00 0.00 3.67
2816 5483 1.270550 GTTTGGATGTGCTGGAGTTGG 59.729 52.381 0.00 0.00 0.00 3.77
2817 5484 1.955778 TGTTTGGATGTGCTGGAGTTG 59.044 47.619 0.00 0.00 0.00 3.16
2818 5485 2.363306 TGTTTGGATGTGCTGGAGTT 57.637 45.000 0.00 0.00 0.00 3.01
2819 5486 2.592102 ATGTTTGGATGTGCTGGAGT 57.408 45.000 0.00 0.00 0.00 3.85
2820 5487 3.127548 GTGTATGTTTGGATGTGCTGGAG 59.872 47.826 0.00 0.00 0.00 3.86
2821 5488 3.081061 GTGTATGTTTGGATGTGCTGGA 58.919 45.455 0.00 0.00 0.00 3.86
2822 5489 2.159531 CGTGTATGTTTGGATGTGCTGG 60.160 50.000 0.00 0.00 0.00 4.85
2823 5490 2.159531 CCGTGTATGTTTGGATGTGCTG 60.160 50.000 0.00 0.00 0.00 4.41
2824 5491 2.083774 CCGTGTATGTTTGGATGTGCT 58.916 47.619 0.00 0.00 0.00 4.40
2825 5492 1.132262 CCCGTGTATGTTTGGATGTGC 59.868 52.381 0.00 0.00 0.00 4.57
2826 5493 2.432444 ACCCGTGTATGTTTGGATGTG 58.568 47.619 0.00 0.00 0.00 3.21
2827 5494 2.871096 ACCCGTGTATGTTTGGATGT 57.129 45.000 0.00 0.00 0.00 3.06
2828 5495 4.233789 CAAAACCCGTGTATGTTTGGATG 58.766 43.478 0.00 0.00 35.03 3.51
2829 5496 3.892588 ACAAAACCCGTGTATGTTTGGAT 59.107 39.130 0.00 0.00 35.03 3.41
2830 5497 3.288964 ACAAAACCCGTGTATGTTTGGA 58.711 40.909 0.00 0.00 35.03 3.53
2831 5498 3.551250 GGACAAAACCCGTGTATGTTTGG 60.551 47.826 0.00 0.00 35.03 3.28
2832 5499 3.551250 GGGACAAAACCCGTGTATGTTTG 60.551 47.826 0.00 0.00 40.49 2.93
2833 5500 2.624364 GGGACAAAACCCGTGTATGTTT 59.376 45.455 0.00 0.00 40.49 2.83
2834 5501 2.232399 GGGACAAAACCCGTGTATGTT 58.768 47.619 0.00 0.00 40.49 2.71
2835 5502 1.900245 GGGACAAAACCCGTGTATGT 58.100 50.000 0.00 0.00 40.49 2.29
2844 5511 4.729227 TGAACAAAAGAGGGACAAAACC 57.271 40.909 0.00 0.00 0.00 3.27
2845 5512 5.458779 CGAATGAACAAAAGAGGGACAAAAC 59.541 40.000 0.00 0.00 0.00 2.43
2846 5513 5.451242 CCGAATGAACAAAAGAGGGACAAAA 60.451 40.000 0.00 0.00 0.00 2.44
2847 5514 4.037446 CCGAATGAACAAAAGAGGGACAAA 59.963 41.667 0.00 0.00 0.00 2.83
2848 5515 3.568007 CCGAATGAACAAAAGAGGGACAA 59.432 43.478 0.00 0.00 0.00 3.18
2849 5516 3.146066 CCGAATGAACAAAAGAGGGACA 58.854 45.455 0.00 0.00 0.00 4.02
2850 5517 2.488153 CCCGAATGAACAAAAGAGGGAC 59.512 50.000 0.00 0.00 39.95 4.46
2851 5518 2.107552 ACCCGAATGAACAAAAGAGGGA 59.892 45.455 4.00 0.00 39.95 4.20
2852 5519 2.488153 GACCCGAATGAACAAAAGAGGG 59.512 50.000 0.00 0.00 43.03 4.30
2853 5520 3.146066 TGACCCGAATGAACAAAAGAGG 58.854 45.455 0.00 0.00 0.00 3.69
2854 5521 3.365364 GCTGACCCGAATGAACAAAAGAG 60.365 47.826 0.00 0.00 0.00 2.85
2855 5522 2.552315 GCTGACCCGAATGAACAAAAGA 59.448 45.455 0.00 0.00 0.00 2.52
2856 5523 2.554032 AGCTGACCCGAATGAACAAAAG 59.446 45.455 0.00 0.00 0.00 2.27
2857 5524 2.293122 CAGCTGACCCGAATGAACAAAA 59.707 45.455 8.42 0.00 0.00 2.44
2858 5525 1.879380 CAGCTGACCCGAATGAACAAA 59.121 47.619 8.42 0.00 0.00 2.83
2859 5526 1.522668 CAGCTGACCCGAATGAACAA 58.477 50.000 8.42 0.00 0.00 2.83
2860 5527 0.955428 GCAGCTGACCCGAATGAACA 60.955 55.000 20.43 0.00 0.00 3.18
2861 5528 1.648467 GGCAGCTGACCCGAATGAAC 61.648 60.000 20.43 0.00 0.00 3.18
2862 5529 1.377202 GGCAGCTGACCCGAATGAA 60.377 57.895 20.43 0.00 0.00 2.57
2863 5530 2.268920 GGCAGCTGACCCGAATGA 59.731 61.111 20.43 0.00 0.00 2.57
2864 5531 2.825836 GGGCAGCTGACCCGAATG 60.826 66.667 29.92 0.00 37.19 2.67
2881 5548 4.695231 AACGGACCAGACGACGCG 62.695 66.667 3.53 3.53 34.93 6.01
2882 5549 1.952635 AAAACGGACCAGACGACGC 60.953 57.895 0.00 0.00 34.93 5.19
2883 5550 0.872881 ACAAAACGGACCAGACGACG 60.873 55.000 0.00 0.00 34.93 5.12
2884 5551 0.580104 CACAAAACGGACCAGACGAC 59.420 55.000 0.00 0.00 34.93 4.34
2885 5552 0.176219 ACACAAAACGGACCAGACGA 59.824 50.000 0.00 0.00 34.93 4.20
2886 5553 1.011333 AACACAAAACGGACCAGACG 58.989 50.000 0.00 0.00 37.36 4.18
2887 5554 2.478879 CCAAACACAAAACGGACCAGAC 60.479 50.000 0.00 0.00 0.00 3.51
2888 5555 1.746220 CCAAACACAAAACGGACCAGA 59.254 47.619 0.00 0.00 0.00 3.86
2889 5556 1.202359 CCCAAACACAAAACGGACCAG 60.202 52.381 0.00 0.00 0.00 4.00
2890 5557 0.818296 CCCAAACACAAAACGGACCA 59.182 50.000 0.00 0.00 0.00 4.02
2891 5558 0.818938 ACCCAAACACAAAACGGACC 59.181 50.000 0.00 0.00 0.00 4.46
2892 5559 1.532298 CGACCCAAACACAAAACGGAC 60.532 52.381 0.00 0.00 0.00 4.79
2893 5560 0.733729 CGACCCAAACACAAAACGGA 59.266 50.000 0.00 0.00 0.00 4.69
2894 5561 0.248702 CCGACCCAAACACAAAACGG 60.249 55.000 0.00 0.00 0.00 4.44
2895 5562 0.868177 GCCGACCCAAACACAAAACG 60.868 55.000 0.00 0.00 0.00 3.60
2896 5563 0.528901 GGCCGACCCAAACACAAAAC 60.529 55.000 0.00 0.00 0.00 2.43
2897 5564 1.817209 GGCCGACCCAAACACAAAA 59.183 52.632 0.00 0.00 0.00 2.44
2898 5565 2.482333 CGGCCGACCCAAACACAAA 61.482 57.895 24.07 0.00 0.00 2.83
2899 5566 2.902846 CGGCCGACCCAAACACAA 60.903 61.111 24.07 0.00 0.00 3.33
2900 5567 4.178169 ACGGCCGACCCAAACACA 62.178 61.111 35.90 0.00 0.00 3.72
2901 5568 3.656045 CACGGCCGACCCAAACAC 61.656 66.667 35.90 0.00 0.00 3.32
2914 5581 2.676016 AAAATGTGGTGTGCGCACGG 62.676 55.000 33.22 0.00 46.13 4.94
2915 5582 0.869454 AAAAATGTGGTGTGCGCACG 60.869 50.000 33.22 0.00 46.13 5.34
2916 5583 0.576328 CAAAAATGTGGTGTGCGCAC 59.424 50.000 33.11 33.11 44.53 5.34
2917 5584 0.174389 ACAAAAATGTGGTGTGCGCA 59.826 45.000 5.66 5.66 0.00 6.09
2918 5585 0.852136 GACAAAAATGTGGTGTGCGC 59.148 50.000 0.00 0.00 0.00 6.09
2919 5586 1.066908 AGGACAAAAATGTGGTGTGCG 59.933 47.619 0.00 0.00 38.49 5.34
2920 5587 2.100584 TGAGGACAAAAATGTGGTGTGC 59.899 45.455 0.00 0.00 34.17 4.57
2921 5588 3.705604 GTGAGGACAAAAATGTGGTGTG 58.294 45.455 0.00 0.00 0.00 3.82
2922 5589 2.357637 CGTGAGGACAAAAATGTGGTGT 59.642 45.455 0.00 0.00 0.00 4.16
2923 5590 2.998772 CGTGAGGACAAAAATGTGGTG 58.001 47.619 0.00 0.00 0.00 4.17
2944 5611 3.150647 AAAAACACGGCAGGCTGGC 62.151 57.895 29.40 29.40 39.85 4.85
2945 5612 3.128375 AAAAACACGGCAGGCTGG 58.872 55.556 17.64 2.59 0.00 4.85
2971 5638 9.607285 GTGAACTGTCGTCAAATTTTTATATGT 57.393 29.630 0.00 0.00 0.00 2.29
2972 5639 9.605955 TGTGAACTGTCGTCAAATTTTTATATG 57.394 29.630 0.00 0.00 0.00 1.78
2977 5644 9.528018 AATTATGTGAACTGTCGTCAAATTTTT 57.472 25.926 0.00 0.00 0.00 1.94
2986 5653 6.612247 TGTTTGAATTATGTGAACTGTCGT 57.388 33.333 0.00 0.00 0.00 4.34
3103 5774 9.740239 GTTAACAACCAATAGATGTATCGACTA 57.260 33.333 0.00 0.00 0.00 2.59
3108 5779 8.415192 TCACGTTAACAACCAATAGATGTATC 57.585 34.615 6.39 0.00 0.00 2.24
3111 5782 5.121768 GCTCACGTTAACAACCAATAGATGT 59.878 40.000 6.39 0.00 0.00 3.06
3115 5786 3.126343 GGGCTCACGTTAACAACCAATAG 59.874 47.826 6.39 0.00 0.00 1.73
3125 5796 4.081365 TGAGAATATGTGGGCTCACGTTAA 60.081 41.667 18.40 0.00 46.42 2.01
3126 5797 3.449377 TGAGAATATGTGGGCTCACGTTA 59.551 43.478 18.40 9.27 46.42 3.18
3130 5801 3.878778 ACTTGAGAATATGTGGGCTCAC 58.121 45.455 10.67 10.67 43.87 3.51
3143 5814 5.942236 AGCTGCAAGATGATTTACTTGAGAA 59.058 36.000 1.02 0.00 43.98 2.87
3144 5815 5.494724 AGCTGCAAGATGATTTACTTGAGA 58.505 37.500 1.02 0.00 43.98 3.27
3163 5834 6.143438 GTGATTGAAAAACTCACATTCAGCTG 59.857 38.462 7.63 7.63 39.24 4.24
3166 5837 5.116074 GCGTGATTGAAAAACTCACATTCAG 59.884 40.000 0.00 0.00 39.36 3.02
3181 5852 5.564048 TTCATCATCAAATGCGTGATTGA 57.436 34.783 0.00 0.00 36.04 2.57
3224 5895 2.361104 GCATGGAGGACCGGCAAA 60.361 61.111 0.00 0.00 38.43 3.68
3229 5900 1.153289 CTTGGAGCATGGAGGACCG 60.153 63.158 0.00 0.00 39.42 4.79
3231 5902 1.834263 ACTACTTGGAGCATGGAGGAC 59.166 52.381 0.00 0.00 0.00 3.85
3244 5915 4.601084 TCCTACTCTGGAAGGACTACTTG 58.399 47.826 0.00 0.00 40.21 3.16
3245 5916 4.949966 TCCTACTCTGGAAGGACTACTT 57.050 45.455 0.00 0.00 43.65 2.24
3246 5917 4.949966 TTCCTACTCTGGAAGGACTACT 57.050 45.455 0.00 0.00 41.63 2.57
3247 5918 5.163395 CCATTTCCTACTCTGGAAGGACTAC 60.163 48.000 0.00 0.00 45.58 2.73
3255 6869 1.559682 GTGGCCATTTCCTACTCTGGA 59.440 52.381 9.72 0.00 0.00 3.86
3266 6880 2.436646 CCGAGAGCGTGGCCATTT 60.437 61.111 9.72 0.00 35.23 2.32
3272 6886 1.577328 AATTGCAACCGAGAGCGTGG 61.577 55.000 0.00 0.00 35.23 4.94
3274 6888 1.626654 CGAATTGCAACCGAGAGCGT 61.627 55.000 15.49 0.00 35.23 5.07
3276 6890 0.095417 GTCGAATTGCAACCGAGAGC 59.905 55.000 21.37 10.02 32.65 4.09
3279 6893 0.165944 GGTGTCGAATTGCAACCGAG 59.834 55.000 21.37 6.40 32.65 4.63
3282 6896 1.209127 CCGGTGTCGAATTGCAACC 59.791 57.895 0.00 0.00 39.00 3.77
3298 6912 1.783031 CTCGATCCGGGTACACTCCG 61.783 65.000 0.00 2.38 46.43 4.63
3299 6913 2.031360 CTCGATCCGGGTACACTCC 58.969 63.158 0.00 0.00 0.00 3.85
3304 6918 3.613689 GGGGCTCGATCCGGGTAC 61.614 72.222 0.00 0.00 0.00 3.34
3314 6930 4.891727 CCGATGTTCCGGGGCTCG 62.892 72.222 0.00 0.00 45.43 5.03
3322 6938 1.741327 TAGGTAGCGGCCGATGTTCC 61.741 60.000 33.48 25.57 0.00 3.62
3333 6949 2.492088 TGGCTGCTATATGTAGGTAGCG 59.508 50.000 0.00 0.00 44.81 4.26
3337 6953 3.495100 GCTTGTGGCTGCTATATGTAGGT 60.495 47.826 0.00 0.00 38.06 3.08
3358 6995 1.945354 TTCATCCGACGGTGAGGAGC 61.945 60.000 14.79 0.00 40.26 4.70
3359 6996 0.101399 CTTCATCCGACGGTGAGGAG 59.899 60.000 14.79 8.42 40.26 3.69
3386 7023 1.185121 CACGATTACATTCGCGACTCG 59.815 52.381 9.15 12.95 42.82 4.18
3389 7026 3.628053 TTTCACGATTACATTCGCGAC 57.372 42.857 9.15 0.00 42.82 5.19
3414 7051 0.898789 ATGGACTCCACCGACGAGTT 60.899 55.000 0.00 0.00 40.67 3.01
3423 7060 2.488153 GCAAGGTACAAATGGACTCCAC 59.512 50.000 0.00 0.00 35.80 4.02
3452 7089 2.856032 CTGCAAGCTGTTCGACGG 59.144 61.111 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.