Multiple sequence alignment - TraesCS1D01G318900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G318900 chr1D 100.000 5956 0 0 1 5956 413219676 413213721 0.000000e+00 10999.0
1 TraesCS1D01G318900 chr1D 81.176 170 30 2 270 439 32221636 32221803 1.040000e-27 135.0
2 TraesCS1D01G318900 chr1B 92.510 3538 164 51 702 4212 556995505 556992042 0.000000e+00 4972.0
3 TraesCS1D01G318900 chr1B 89.425 1740 99 40 4287 5954 556992035 556990309 0.000000e+00 2115.0
4 TraesCS1D01G318900 chr1B 85.818 275 38 1 365 639 556995794 556995521 2.100000e-74 291.0
5 TraesCS1D01G318900 chr1B 88.356 146 15 2 221 364 557097274 557097129 2.210000e-39 174.0
6 TraesCS1D01G318900 chr1A 88.145 1822 135 41 770 2559 510286997 510285225 0.000000e+00 2093.0
7 TraesCS1D01G318900 chr1A 93.182 1320 57 12 3844 5159 510284126 510282836 0.000000e+00 1908.0
8 TraesCS1D01G318900 chr1A 86.751 1185 88 40 2557 3705 510285275 510284124 0.000000e+00 1254.0
9 TraesCS1D01G318900 chr1A 86.152 686 44 20 5307 5954 510282613 510281941 0.000000e+00 693.0
10 TraesCS1D01G318900 chr2A 92.617 149 11 0 3699 3847 562096781 562096929 1.300000e-51 215.0
11 TraesCS1D01G318900 chr2A 88.811 143 15 1 3702 3844 27949213 27949072 2.210000e-39 174.0
12 TraesCS1D01G318900 chr7D 75.768 293 64 5 276 563 484298447 484298737 2.240000e-29 141.0
13 TraesCS1D01G318900 chr7D 93.023 86 6 0 2367 2452 401536687 401536772 6.270000e-25 126.0
14 TraesCS1D01G318900 chr7D 81.633 147 25 2 3699 3844 618765152 618765007 2.920000e-23 121.0
15 TraesCS1D01G318900 chr6B 80.328 183 32 2 273 452 101613938 101614119 1.040000e-27 135.0
16 TraesCS1D01G318900 chr6B 92.941 85 6 0 2367 2451 278674697 278674613 2.250000e-24 124.0
17 TraesCS1D01G318900 chr3B 83.333 144 24 0 3703 3846 106146636 106146493 3.740000e-27 134.0
18 TraesCS1D01G318900 chr3B 81.188 101 19 0 273 373 778471444 778471344 1.380000e-11 82.4
19 TraesCS1D01G318900 chr6D 93.182 88 3 1 2367 2451 24823423 24823336 6.270000e-25 126.0
20 TraesCS1D01G318900 chr6D 90.110 91 9 0 2363 2453 13067037 13067127 1.050000e-22 119.0
21 TraesCS1D01G318900 chr6D 90.909 88 8 0 3726 3813 379714425 379714338 1.050000e-22 119.0
22 TraesCS1D01G318900 chr7B 92.941 85 6 0 2367 2451 13801855 13801939 2.250000e-24 124.0
23 TraesCS1D01G318900 chr6A 92.941 85 6 0 2367 2451 209391425 209391341 2.250000e-24 124.0
24 TraesCS1D01G318900 chr6A 91.954 87 7 0 2363 2449 14350984 14351070 8.110000e-24 122.0
25 TraesCS1D01G318900 chr5D 96.053 76 3 0 3769 3844 29158754 29158679 2.250000e-24 124.0
26 TraesCS1D01G318900 chr2D 91.011 89 8 0 2367 2455 175825110 175825022 2.920000e-23 121.0
27 TraesCS1D01G318900 chr4D 77.515 169 32 4 274 438 499593235 499593069 4.910000e-16 97.1
28 TraesCS1D01G318900 chr3D 75.113 221 39 11 229 436 582815554 582815771 8.220000e-14 89.8
29 TraesCS1D01G318900 chr5B 94.737 38 1 1 3778 3814 357133217 357133254 2.320000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G318900 chr1D 413213721 413219676 5955 True 10999.000000 10999 100.0000 1 5956 1 chr1D.!!$R1 5955
1 TraesCS1D01G318900 chr1B 556990309 556995794 5485 True 2459.333333 4972 89.2510 365 5954 3 chr1B.!!$R2 5589
2 TraesCS1D01G318900 chr1A 510281941 510286997 5056 True 1487.000000 2093 88.5575 770 5954 4 chr1A.!!$R1 5184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.028902 CTTAAATAACCGCGGCCAGC 59.971 55.0 28.58 6.52 43.95 4.85 F
312 313 0.034337 CGGAGTTGGTTTCTCGGGAA 59.966 55.0 0.00 0.00 33.26 3.97 F
1125 1136 0.172352 CTCTTCGGAGCTTCGCTTCT 59.828 55.0 10.36 0.00 39.88 2.85 F
1535 1553 0.321210 TGGGTTCATACACCACTGCG 60.321 55.0 0.00 0.00 38.79 5.18 F
1703 1734 0.464036 TACCATTCTGTGCGGGCTAG 59.536 55.0 0.00 0.00 0.00 3.42 F
3131 3230 1.977293 TTTTGGCACCCAAGGTTGCC 61.977 55.0 19.61 19.61 44.84 4.52 F
3777 3909 0.603707 CTGTTTGCTCGCTCCAGGAA 60.604 55.0 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 1540 0.179148 TACTCGCGCAGTGGTGTATG 60.179 55.000 18.70 0.00 39.32 2.39 R
1533 1551 0.457853 TGGAACTGATGTACTCGCGC 60.458 55.000 0.00 0.00 0.00 6.86 R
2298 2340 0.606944 TGTGAACCCCAACGCCATAC 60.607 55.000 0.00 0.00 0.00 2.39 R
3131 3230 1.470098 GGTAACACATCAAGCTGGCTG 59.530 52.381 0.00 0.00 0.00 4.85 R
3668 3800 3.181475 CGGATCCTACTACAGCACAACAT 60.181 47.826 10.75 0.00 0.00 2.71 R
4895 5032 2.025981 TGTGCTTACTGCTCCAATGGAT 60.026 45.455 0.87 0.00 43.37 3.41 R
5402 5647 0.467290 GGTCACCAAACTGGCCAGAA 60.467 55.000 39.19 11.69 42.67 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.278513 CGGCCCCAAGAACCACCA 62.279 66.667 0.00 0.00 0.00 4.17
28 29 2.283173 GGCCCCAAGAACCACCAG 60.283 66.667 0.00 0.00 0.00 4.00
29 30 2.840753 GGCCCCAAGAACCACCAGA 61.841 63.158 0.00 0.00 0.00 3.86
30 31 1.603739 GCCCCAAGAACCACCAGAC 60.604 63.158 0.00 0.00 0.00 3.51
31 32 1.302511 CCCCAAGAACCACCAGACG 60.303 63.158 0.00 0.00 0.00 4.18
32 33 1.752198 CCCAAGAACCACCAGACGA 59.248 57.895 0.00 0.00 0.00 4.20
33 34 0.107831 CCCAAGAACCACCAGACGAA 59.892 55.000 0.00 0.00 0.00 3.85
34 35 1.512926 CCAAGAACCACCAGACGAAG 58.487 55.000 0.00 0.00 0.00 3.79
35 36 1.070134 CCAAGAACCACCAGACGAAGA 59.930 52.381 0.00 0.00 0.00 2.87
36 37 2.484770 CCAAGAACCACCAGACGAAGAA 60.485 50.000 0.00 0.00 0.00 2.52
37 38 2.528041 AGAACCACCAGACGAAGAAC 57.472 50.000 0.00 0.00 0.00 3.01
38 39 2.040178 AGAACCACCAGACGAAGAACT 58.960 47.619 0.00 0.00 0.00 3.01
39 40 2.036089 AGAACCACCAGACGAAGAACTC 59.964 50.000 0.00 0.00 0.00 3.01
40 41 0.680061 ACCACCAGACGAAGAACTCC 59.320 55.000 0.00 0.00 0.00 3.85
41 42 0.037232 CCACCAGACGAAGAACTCCC 60.037 60.000 0.00 0.00 0.00 4.30
42 43 0.679505 CACCAGACGAAGAACTCCCA 59.320 55.000 0.00 0.00 0.00 4.37
43 44 0.680061 ACCAGACGAAGAACTCCCAC 59.320 55.000 0.00 0.00 0.00 4.61
44 45 0.969894 CCAGACGAAGAACTCCCACT 59.030 55.000 0.00 0.00 0.00 4.00
45 46 1.337260 CCAGACGAAGAACTCCCACTG 60.337 57.143 0.00 0.00 0.00 3.66
46 47 1.341531 CAGACGAAGAACTCCCACTGT 59.658 52.381 0.00 0.00 0.00 3.55
47 48 1.614413 AGACGAAGAACTCCCACTGTC 59.386 52.381 0.00 0.00 0.00 3.51
48 49 1.614413 GACGAAGAACTCCCACTGTCT 59.386 52.381 0.00 0.00 0.00 3.41
49 50 1.614413 ACGAAGAACTCCCACTGTCTC 59.386 52.381 0.00 0.00 0.00 3.36
50 51 1.067495 CGAAGAACTCCCACTGTCTCC 60.067 57.143 0.00 0.00 0.00 3.71
51 52 2.252714 GAAGAACTCCCACTGTCTCCT 58.747 52.381 0.00 0.00 0.00 3.69
52 53 1.638529 AGAACTCCCACTGTCTCCTG 58.361 55.000 0.00 0.00 0.00 3.86
53 54 0.036858 GAACTCCCACTGTCTCCTGC 60.037 60.000 0.00 0.00 0.00 4.85
54 55 1.484444 AACTCCCACTGTCTCCTGCC 61.484 60.000 0.00 0.00 0.00 4.85
55 56 1.611851 CTCCCACTGTCTCCTGCCT 60.612 63.158 0.00 0.00 0.00 4.75
56 57 1.897225 CTCCCACTGTCTCCTGCCTG 61.897 65.000 0.00 0.00 0.00 4.85
57 58 2.046507 CCACTGTCTCCTGCCTGC 60.047 66.667 0.00 0.00 0.00 4.85
58 59 2.591072 CCACTGTCTCCTGCCTGCT 61.591 63.158 0.00 0.00 0.00 4.24
59 60 1.260538 CCACTGTCTCCTGCCTGCTA 61.261 60.000 0.00 0.00 0.00 3.49
60 61 0.175302 CACTGTCTCCTGCCTGCTAG 59.825 60.000 0.00 0.00 0.00 3.42
61 62 1.143620 CTGTCTCCTGCCTGCTAGC 59.856 63.158 8.10 8.10 0.00 3.42
62 63 1.610379 TGTCTCCTGCCTGCTAGCA 60.610 57.895 18.22 18.22 41.46 3.49
63 64 1.153469 GTCTCCTGCCTGCTAGCAC 60.153 63.158 14.93 5.77 38.00 4.40
64 65 2.202851 CTCCTGCCTGCTAGCACG 60.203 66.667 14.93 11.60 38.00 5.34
65 66 2.679996 TCCTGCCTGCTAGCACGA 60.680 61.111 14.93 1.49 38.00 4.35
66 67 2.230994 CTCCTGCCTGCTAGCACGAA 62.231 60.000 14.93 3.41 38.00 3.85
67 68 1.812922 CCTGCCTGCTAGCACGAAG 60.813 63.158 14.93 13.96 38.00 3.79
68 69 1.216444 CTGCCTGCTAGCACGAAGA 59.784 57.895 14.93 0.00 38.00 2.87
69 70 0.390340 CTGCCTGCTAGCACGAAGAA 60.390 55.000 14.93 0.00 38.00 2.52
70 71 0.670546 TGCCTGCTAGCACGAAGAAC 60.671 55.000 14.93 0.82 38.00 3.01
71 72 1.362406 GCCTGCTAGCACGAAGAACC 61.362 60.000 14.93 0.00 0.00 3.62
72 73 0.037326 CCTGCTAGCACGAAGAACCA 60.037 55.000 14.93 0.00 0.00 3.67
73 74 1.608025 CCTGCTAGCACGAAGAACCAA 60.608 52.381 14.93 0.00 0.00 3.67
74 75 1.728971 CTGCTAGCACGAAGAACCAAG 59.271 52.381 14.93 0.00 0.00 3.61
75 76 1.343142 TGCTAGCACGAAGAACCAAGA 59.657 47.619 14.93 0.00 0.00 3.02
76 77 1.727335 GCTAGCACGAAGAACCAAGAC 59.273 52.381 10.63 0.00 0.00 3.01
77 78 2.610727 GCTAGCACGAAGAACCAAGACT 60.611 50.000 10.63 0.00 0.00 3.24
78 79 2.622064 AGCACGAAGAACCAAGACTT 57.378 45.000 0.00 0.00 0.00 3.01
79 80 2.919228 AGCACGAAGAACCAAGACTTT 58.081 42.857 0.00 0.00 0.00 2.66
80 81 2.614057 AGCACGAAGAACCAAGACTTTG 59.386 45.455 0.00 0.00 34.70 2.77
88 89 2.559785 CCAAGACTTTGGCATCGCT 58.440 52.632 0.00 0.00 46.84 4.93
89 90 0.169672 CCAAGACTTTGGCATCGCTG 59.830 55.000 0.00 0.00 46.84 5.18
90 91 0.877071 CAAGACTTTGGCATCGCTGT 59.123 50.000 0.00 0.00 0.00 4.40
91 92 1.267806 CAAGACTTTGGCATCGCTGTT 59.732 47.619 0.00 0.00 0.00 3.16
92 93 0.877071 AGACTTTGGCATCGCTGTTG 59.123 50.000 0.00 0.00 0.00 3.33
93 94 0.109597 GACTTTGGCATCGCTGTTGG 60.110 55.000 0.00 0.00 0.00 3.77
94 95 1.213537 CTTTGGCATCGCTGTTGGG 59.786 57.895 0.00 0.00 0.00 4.12
95 96 2.824071 CTTTGGCATCGCTGTTGGGC 62.824 60.000 0.00 0.00 0.00 5.36
96 97 3.866379 TTGGCATCGCTGTTGGGCT 62.866 57.895 0.00 0.00 0.00 5.19
97 98 3.512516 GGCATCGCTGTTGGGCTC 61.513 66.667 0.00 0.00 0.00 4.70
98 99 3.869272 GCATCGCTGTTGGGCTCG 61.869 66.667 0.00 0.00 0.00 5.03
99 100 2.125552 CATCGCTGTTGGGCTCGA 60.126 61.111 0.00 0.00 35.34 4.04
100 101 1.741401 CATCGCTGTTGGGCTCGAA 60.741 57.895 0.00 0.00 34.50 3.71
101 102 1.448540 ATCGCTGTTGGGCTCGAAG 60.449 57.895 0.00 0.00 34.50 3.79
102 103 1.888436 ATCGCTGTTGGGCTCGAAGA 61.888 55.000 0.00 0.00 34.50 2.87
113 114 4.035843 TCGAAGAGGAGGAAGGGC 57.964 61.111 0.00 0.00 0.00 5.19
114 115 1.388531 TCGAAGAGGAGGAAGGGCT 59.611 57.895 0.00 0.00 0.00 5.19
115 116 0.684805 TCGAAGAGGAGGAAGGGCTC 60.685 60.000 0.00 0.00 0.00 4.70
116 117 1.819905 GAAGAGGAGGAAGGGCTCG 59.180 63.158 0.00 0.00 0.00 5.03
117 118 0.684805 GAAGAGGAGGAAGGGCTCGA 60.685 60.000 0.00 0.00 0.00 4.04
118 119 0.686112 AAGAGGAGGAAGGGCTCGAG 60.686 60.000 8.45 8.45 0.00 4.04
119 120 1.076632 GAGGAGGAAGGGCTCGAGA 60.077 63.158 18.75 0.00 0.00 4.04
120 121 0.684805 GAGGAGGAAGGGCTCGAGAA 60.685 60.000 18.75 0.00 0.00 2.87
121 122 0.973496 AGGAGGAAGGGCTCGAGAAC 60.973 60.000 18.75 7.89 0.00 3.01
122 123 1.139947 GAGGAAGGGCTCGAGAACG 59.860 63.158 18.75 0.00 41.26 3.95
123 124 2.184579 GGAAGGGCTCGAGAACGG 59.815 66.667 18.75 0.00 40.21 4.44
124 125 2.647158 GGAAGGGCTCGAGAACGGT 61.647 63.158 18.75 1.22 40.21 4.83
125 126 1.446272 GAAGGGCTCGAGAACGGTG 60.446 63.158 18.75 0.00 40.21 4.94
126 127 2.837371 GAAGGGCTCGAGAACGGTGG 62.837 65.000 18.75 0.00 40.21 4.61
127 128 3.692406 GGGCTCGAGAACGGTGGT 61.692 66.667 18.75 0.00 40.21 4.16
128 129 2.432628 GGCTCGAGAACGGTGGTG 60.433 66.667 18.75 0.00 40.21 4.17
129 130 2.432628 GCTCGAGAACGGTGGTGG 60.433 66.667 18.75 0.00 40.21 4.61
130 131 2.261671 CTCGAGAACGGTGGTGGG 59.738 66.667 6.58 0.00 40.21 4.61
131 132 3.296709 CTCGAGAACGGTGGTGGGG 62.297 68.421 6.58 0.00 40.21 4.96
132 133 3.307906 CGAGAACGGTGGTGGGGA 61.308 66.667 0.00 0.00 35.72 4.81
133 134 2.663196 GAGAACGGTGGTGGGGAG 59.337 66.667 0.00 0.00 0.00 4.30
134 135 2.928396 AGAACGGTGGTGGGGAGG 60.928 66.667 0.00 0.00 0.00 4.30
135 136 4.029809 GAACGGTGGTGGGGAGGG 62.030 72.222 0.00 0.00 0.00 4.30
138 139 4.726254 CGGTGGTGGGGAGGGGTA 62.726 72.222 0.00 0.00 0.00 3.69
139 140 2.691252 GGTGGTGGGGAGGGGTAG 60.691 72.222 0.00 0.00 0.00 3.18
140 141 2.691252 GTGGTGGGGAGGGGTAGG 60.691 72.222 0.00 0.00 0.00 3.18
141 142 2.877383 TGGTGGGGAGGGGTAGGA 60.877 66.667 0.00 0.00 0.00 2.94
142 143 2.040779 GGTGGGGAGGGGTAGGAG 60.041 72.222 0.00 0.00 0.00 3.69
143 144 2.040779 GTGGGGAGGGGTAGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
144 145 2.204721 TGGGGAGGGGTAGGAGGA 60.205 66.667 0.00 0.00 0.00 3.71
145 146 2.286213 GGGGAGGGGTAGGAGGAC 59.714 72.222 0.00 0.00 0.00 3.85
146 147 2.123382 GGGAGGGGTAGGAGGACG 60.123 72.222 0.00 0.00 0.00 4.79
147 148 2.123382 GGAGGGGTAGGAGGACGG 60.123 72.222 0.00 0.00 0.00 4.79
148 149 2.688538 GAGGGGTAGGAGGACGGT 59.311 66.667 0.00 0.00 0.00 4.83
149 150 1.757340 GAGGGGTAGGAGGACGGTG 60.757 68.421 0.00 0.00 0.00 4.94
150 151 3.468140 GGGGTAGGAGGACGGTGC 61.468 72.222 0.00 0.00 0.00 5.01
151 152 2.363925 GGGTAGGAGGACGGTGCT 60.364 66.667 0.31 0.31 0.00 4.40
152 153 2.424733 GGGTAGGAGGACGGTGCTC 61.425 68.421 19.99 19.99 33.75 4.26
153 154 2.772691 GGTAGGAGGACGGTGCTCG 61.773 68.421 21.08 0.00 45.88 5.03
154 155 2.439701 TAGGAGGACGGTGCTCGG 60.440 66.667 21.08 0.00 44.45 4.63
173 174 4.521062 GAGCGGGCATGCGACTCT 62.521 66.667 20.02 12.88 40.67 3.24
174 175 4.827087 AGCGGGCATGCGACTCTG 62.827 66.667 12.44 3.75 40.67 3.35
184 185 3.816920 CGACTCTGCGCGTTGTCG 61.817 66.667 25.46 25.46 44.41 4.35
185 186 3.470567 GACTCTGCGCGTTGTCGG 61.471 66.667 8.43 0.00 37.56 4.79
204 205 3.658351 GGCACACGACTTAAATAGCTG 57.342 47.619 0.00 0.00 0.00 4.24
205 206 2.223044 GGCACACGACTTAAATAGCTGC 60.223 50.000 0.00 0.00 0.00 5.25
206 207 2.534939 GCACACGACTTAAATAGCTGCG 60.535 50.000 0.00 0.00 0.00 5.18
207 208 2.029244 CACACGACTTAAATAGCTGCGG 59.971 50.000 0.00 0.00 0.00 5.69
208 209 1.004927 CACGACTTAAATAGCTGCGGC 60.005 52.381 10.33 10.33 39.06 6.53
209 210 0.582005 CGACTTAAATAGCTGCGGCC 59.418 55.000 15.55 0.00 39.73 6.13
210 211 1.663695 GACTTAAATAGCTGCGGCCA 58.336 50.000 15.55 0.00 39.73 5.36
211 212 1.599542 GACTTAAATAGCTGCGGCCAG 59.400 52.381 15.55 3.47 42.13 4.85
212 213 0.947244 CTTAAATAGCTGCGGCCAGG 59.053 55.000 15.55 0.00 39.54 4.45
213 214 1.101049 TTAAATAGCTGCGGCCAGGC 61.101 55.000 15.55 1.26 39.54 4.85
222 223 4.598894 CGGCCAGGCGAGATGAGG 62.599 72.222 8.02 0.00 0.00 3.86
223 224 4.925861 GGCCAGGCGAGATGAGGC 62.926 72.222 5.00 0.00 44.48 4.70
224 225 3.859414 GCCAGGCGAGATGAGGCT 61.859 66.667 0.00 0.00 45.83 4.58
225 226 2.502492 GCCAGGCGAGATGAGGCTA 61.502 63.158 0.00 0.00 42.91 3.93
226 227 1.664873 CCAGGCGAGATGAGGCTAG 59.335 63.158 0.00 0.00 42.91 3.42
227 228 1.664873 CAGGCGAGATGAGGCTAGG 59.335 63.158 0.00 0.00 42.91 3.02
228 229 1.112315 CAGGCGAGATGAGGCTAGGT 61.112 60.000 0.00 0.00 42.91 3.08
229 230 0.825840 AGGCGAGATGAGGCTAGGTC 60.826 60.000 0.00 0.00 42.96 3.85
230 231 1.284408 GCGAGATGAGGCTAGGTCG 59.716 63.158 0.00 0.00 0.00 4.79
231 232 1.953017 CGAGATGAGGCTAGGTCGG 59.047 63.158 0.00 0.00 0.00 4.79
232 233 1.663173 GAGATGAGGCTAGGTCGGC 59.337 63.158 0.00 0.00 0.00 5.54
233 234 2.136196 GAGATGAGGCTAGGTCGGCG 62.136 65.000 0.00 0.00 34.19 6.46
234 235 3.850095 GATGAGGCTAGGTCGGCGC 62.850 68.421 0.00 0.00 34.19 6.53
236 237 4.874977 GAGGCTAGGTCGGCGCAC 62.875 72.222 10.83 0.00 34.19 5.34
249 250 2.447089 GGCGCACGACTTAAATAACC 57.553 50.000 10.83 0.00 0.00 2.85
250 251 1.267186 GGCGCACGACTTAAATAACCG 60.267 52.381 10.83 0.00 0.00 4.44
251 252 1.849348 GCGCACGACTTAAATAACCGC 60.849 52.381 0.30 0.00 0.00 5.68
252 253 1.588082 CGCACGACTTAAATAACCGCG 60.588 52.381 0.00 0.00 0.00 6.46
253 254 1.267186 GCACGACTTAAATAACCGCGG 60.267 52.381 26.86 26.86 0.00 6.46
254 255 1.001624 ACGACTTAAATAACCGCGGC 58.998 50.000 28.58 3.11 0.00 6.53
255 256 0.302589 CGACTTAAATAACCGCGGCC 59.697 55.000 28.58 0.00 0.00 6.13
256 257 1.371595 GACTTAAATAACCGCGGCCA 58.628 50.000 28.58 14.35 0.00 5.36
257 258 1.329599 GACTTAAATAACCGCGGCCAG 59.670 52.381 28.58 12.80 0.00 4.85
258 259 0.028902 CTTAAATAACCGCGGCCAGC 59.971 55.000 28.58 6.52 43.95 4.85
259 260 1.378124 TTAAATAACCGCGGCCAGCC 61.378 55.000 28.58 0.00 44.76 4.85
260 261 2.538512 TAAATAACCGCGGCCAGCCA 62.539 55.000 28.58 3.60 44.76 4.75
261 262 4.856801 ATAACCGCGGCCAGCCAG 62.857 66.667 28.58 0.00 44.76 4.85
269 270 4.746309 GGCCAGCCAGATGGTGCA 62.746 66.667 3.12 0.00 42.75 4.57
270 271 3.446570 GCCAGCCAGATGGTGCAC 61.447 66.667 8.80 8.80 42.75 4.57
271 272 2.034532 CCAGCCAGATGGTGCACA 59.965 61.111 20.43 5.24 41.21 4.57
272 273 2.044555 CCAGCCAGATGGTGCACAG 61.045 63.158 20.43 2.39 41.21 3.66
273 274 2.360852 AGCCAGATGGTGCACAGC 60.361 61.111 20.43 10.75 37.57 4.40
275 276 1.975407 GCCAGATGGTGCACAGCTT 60.975 57.895 20.43 0.00 45.07 3.74
276 277 1.930908 GCCAGATGGTGCACAGCTTC 61.931 60.000 20.43 9.75 45.07 3.86
277 278 0.607217 CCAGATGGTGCACAGCTTCA 60.607 55.000 20.43 7.22 45.07 3.02
278 279 1.241165 CAGATGGTGCACAGCTTCAA 58.759 50.000 20.43 0.00 45.07 2.69
279 280 1.816835 CAGATGGTGCACAGCTTCAAT 59.183 47.619 20.43 0.00 45.07 2.57
280 281 1.816835 AGATGGTGCACAGCTTCAATG 59.183 47.619 20.43 0.00 45.07 2.82
281 282 0.245539 ATGGTGCACAGCTTCAATGC 59.754 50.000 20.43 0.00 39.88 3.56
282 283 1.443194 GGTGCACAGCTTCAATGCG 60.443 57.895 20.43 0.00 42.44 4.73
283 284 1.443194 GTGCACAGCTTCAATGCGG 60.443 57.895 13.17 0.00 42.44 5.69
284 285 2.505557 GCACAGCTTCAATGCGGC 60.506 61.111 0.00 0.00 38.13 6.53
285 286 2.202388 CACAGCTTCAATGCGGCG 60.202 61.111 0.51 0.51 38.13 6.46
286 287 2.669569 ACAGCTTCAATGCGGCGT 60.670 55.556 9.37 0.00 38.13 5.68
287 288 1.375396 ACAGCTTCAATGCGGCGTA 60.375 52.632 9.37 3.65 38.13 4.42
288 289 1.349627 CAGCTTCAATGCGGCGTAG 59.650 57.895 9.37 0.00 38.13 3.51
302 303 4.078516 GTAGCGGCCGGAGTTGGT 62.079 66.667 29.38 4.97 0.00 3.67
303 304 3.315949 TAGCGGCCGGAGTTGGTT 61.316 61.111 29.38 0.00 0.00 3.67
304 305 2.886134 TAGCGGCCGGAGTTGGTTT 61.886 57.895 29.38 0.00 0.00 3.27
305 306 2.791501 TAGCGGCCGGAGTTGGTTTC 62.792 60.000 29.38 5.52 0.00 2.78
306 307 2.032071 CGGCCGGAGTTGGTTTCT 59.968 61.111 20.10 0.00 0.00 2.52
307 308 2.033194 CGGCCGGAGTTGGTTTCTC 61.033 63.158 20.10 0.00 0.00 2.87
308 309 2.033194 GGCCGGAGTTGGTTTCTCG 61.033 63.158 5.05 0.00 33.26 4.04
309 310 2.033194 GCCGGAGTTGGTTTCTCGG 61.033 63.158 5.05 0.00 33.26 4.63
310 311 1.375523 CCGGAGTTGGTTTCTCGGG 60.376 63.158 0.00 5.43 42.71 5.14
311 312 1.669440 CGGAGTTGGTTTCTCGGGA 59.331 57.895 0.00 0.00 33.26 5.14
312 313 0.034337 CGGAGTTGGTTTCTCGGGAA 59.966 55.000 0.00 0.00 33.26 3.97
313 314 1.809684 GGAGTTGGTTTCTCGGGAAG 58.190 55.000 0.00 0.00 32.61 3.46
314 315 1.157585 GAGTTGGTTTCTCGGGAAGC 58.842 55.000 2.81 2.81 32.61 3.86
315 316 0.602905 AGTTGGTTTCTCGGGAAGCG 60.603 55.000 5.75 0.00 34.22 4.68
316 317 1.302192 TTGGTTTCTCGGGAAGCGG 60.302 57.895 5.75 0.00 34.22 5.52
317 318 3.125573 GGTTTCTCGGGAAGCGGC 61.126 66.667 5.75 0.00 34.22 6.53
318 319 3.488090 GTTTCTCGGGAAGCGGCG 61.488 66.667 0.51 0.51 32.61 6.46
319 320 3.998672 TTTCTCGGGAAGCGGCGT 61.999 61.111 9.37 0.00 32.61 5.68
320 321 3.927163 TTTCTCGGGAAGCGGCGTC 62.927 63.158 9.37 7.41 32.61 5.19
326 327 3.127533 GGAAGCGGCGTCTGCATT 61.128 61.111 15.25 4.84 45.35 3.56
327 328 1.813753 GGAAGCGGCGTCTGCATTA 60.814 57.895 15.25 0.00 45.35 1.90
328 329 1.366111 GGAAGCGGCGTCTGCATTAA 61.366 55.000 15.25 0.00 45.35 1.40
329 330 0.446222 GAAGCGGCGTCTGCATTAAA 59.554 50.000 9.37 0.00 45.35 1.52
330 331 0.447801 AAGCGGCGTCTGCATTAAAG 59.552 50.000 9.37 0.00 45.35 1.85
331 332 1.583709 GCGGCGTCTGCATTAAAGC 60.584 57.895 9.37 0.00 45.35 3.51
332 333 1.296867 CGGCGTCTGCATTAAAGCG 60.297 57.895 0.00 0.00 45.35 4.68
333 334 1.062525 GGCGTCTGCATTAAAGCGG 59.937 57.895 5.12 5.12 45.35 5.52
334 335 1.583709 GCGTCTGCATTAAAGCGGC 60.584 57.895 6.63 0.00 40.71 6.53
335 336 1.296867 CGTCTGCATTAAAGCGGCG 60.297 57.895 0.51 0.51 40.71 6.46
336 337 1.062525 GTCTGCATTAAAGCGGCGG 59.937 57.895 9.78 1.06 40.71 6.13
337 338 2.278142 CTGCATTAAAGCGGCGGC 60.278 61.111 9.78 8.43 37.31 6.53
338 339 4.172772 TGCATTAAAGCGGCGGCG 62.173 61.111 28.70 28.70 46.35 6.46
340 341 4.905193 CATTAAAGCGGCGGCGCC 62.905 66.667 46.21 39.60 46.75 6.53
353 354 4.719369 GCGCCCGAGAAGTCACGT 62.719 66.667 0.00 0.00 0.00 4.49
354 355 2.504244 CGCCCGAGAAGTCACGTC 60.504 66.667 0.00 0.00 0.00 4.34
355 356 2.126031 GCCCGAGAAGTCACGTCC 60.126 66.667 0.00 0.00 0.00 4.79
356 357 2.178521 CCCGAGAAGTCACGTCCG 59.821 66.667 0.00 0.00 0.00 4.79
357 358 2.623915 CCCGAGAAGTCACGTCCGT 61.624 63.158 0.00 0.00 0.00 4.69
358 359 1.154263 CCGAGAAGTCACGTCCGTC 60.154 63.158 0.00 0.00 0.00 4.79
359 360 1.572941 CGAGAAGTCACGTCCGTCA 59.427 57.895 0.00 0.00 0.00 4.35
360 361 0.452950 CGAGAAGTCACGTCCGTCAG 60.453 60.000 0.00 0.00 0.00 3.51
361 362 0.592148 GAGAAGTCACGTCCGTCAGT 59.408 55.000 0.00 0.00 0.00 3.41
362 363 0.311165 AGAAGTCACGTCCGTCAGTG 59.689 55.000 0.00 0.00 39.55 3.66
363 364 1.276145 GAAGTCACGTCCGTCAGTGC 61.276 60.000 0.00 0.00 38.19 4.40
398 399 3.627123 CAGTCAAATCACGGGCATCAATA 59.373 43.478 0.00 0.00 0.00 1.90
399 400 4.276678 CAGTCAAATCACGGGCATCAATAT 59.723 41.667 0.00 0.00 0.00 1.28
402 403 2.099141 ATCACGGGCATCAATATCGG 57.901 50.000 0.00 0.00 0.00 4.18
420 421 3.503363 GCGCTGCATGGTCTGGTC 61.503 66.667 0.00 0.00 0.00 4.02
441 442 3.490759 CAAGAATGCGGCGCGACT 61.491 61.111 28.09 21.59 0.00 4.18
480 481 2.562296 TGGAAAGCATAGGAGGGACTT 58.438 47.619 0.00 0.00 41.55 3.01
484 485 2.254152 AGCATAGGAGGGACTTGTGA 57.746 50.000 0.00 0.00 41.55 3.58
487 488 2.752030 CATAGGAGGGACTTGTGAGGA 58.248 52.381 0.00 0.00 41.55 3.71
508 509 4.052518 GTGATGGGCCAGGGCAGT 62.053 66.667 16.36 1.67 44.11 4.40
511 512 2.042762 ATGGGCCAGGGCAGTCTA 59.957 61.111 16.36 0.00 44.11 2.59
513 514 1.926426 ATGGGCCAGGGCAGTCTAAC 61.926 60.000 16.36 0.00 44.11 2.34
515 516 2.820037 GCCAGGGCAGTCTAACGC 60.820 66.667 5.20 0.00 41.49 4.84
527 528 1.447838 CTAACGCGGGCATGTCAGT 60.448 57.895 12.47 0.00 0.00 3.41
530 531 2.512286 CGCGGGCATGTCAGTGAT 60.512 61.111 4.94 0.00 0.00 3.06
536 537 0.811616 GGCATGTCAGTGATCCGGAC 60.812 60.000 6.12 0.90 0.00 4.79
563 564 4.376340 CAAAGCCACTTCACTTTGTCTT 57.624 40.909 7.20 0.00 44.90 3.01
570 571 4.342772 CACTTCACTTTGTCTTCGGTTTG 58.657 43.478 0.00 0.00 0.00 2.93
572 573 2.360844 TCACTTTGTCTTCGGTTTGCA 58.639 42.857 0.00 0.00 0.00 4.08
573 574 2.354510 TCACTTTGTCTTCGGTTTGCAG 59.645 45.455 0.00 0.00 0.00 4.41
574 575 1.676006 ACTTTGTCTTCGGTTTGCAGG 59.324 47.619 0.00 0.00 0.00 4.85
577 578 2.045561 TGTCTTCGGTTTGCAGGAAA 57.954 45.000 0.00 0.00 0.00 3.13
606 607 1.491670 CCGATCAGGACGTATGCAAG 58.508 55.000 0.00 0.00 45.00 4.01
612 613 0.321298 AGGACGTATGCAAGCGGTTT 60.321 50.000 15.80 0.00 0.00 3.27
620 621 2.966309 GCAAGCGGTTTCAGGGTCG 61.966 63.158 0.00 0.00 0.00 4.79
626 627 1.004679 GGTTTCAGGGTCGGCGTTA 60.005 57.895 6.85 0.00 0.00 3.18
627 628 1.017701 GGTTTCAGGGTCGGCGTTAG 61.018 60.000 6.85 0.00 0.00 2.34
642 643 4.252971 GCGTTAGAGATGCCCTTATACA 57.747 45.455 0.00 0.00 34.03 2.29
643 644 4.822026 GCGTTAGAGATGCCCTTATACAT 58.178 43.478 0.00 0.00 34.03 2.29
644 645 4.865365 GCGTTAGAGATGCCCTTATACATC 59.135 45.833 0.00 0.00 42.45 3.06
645 646 5.411781 CGTTAGAGATGCCCTTATACATCC 58.588 45.833 0.00 0.00 43.01 3.51
646 647 5.047306 CGTTAGAGATGCCCTTATACATCCA 60.047 44.000 0.00 0.00 43.01 3.41
647 648 4.899352 AGAGATGCCCTTATACATCCAC 57.101 45.455 0.00 0.00 43.01 4.02
648 649 3.584848 AGAGATGCCCTTATACATCCACC 59.415 47.826 0.00 0.00 43.01 4.61
649 650 3.326521 AGATGCCCTTATACATCCACCA 58.673 45.455 0.00 0.00 43.01 4.17
650 651 3.721575 AGATGCCCTTATACATCCACCAA 59.278 43.478 0.00 0.00 43.01 3.67
651 652 3.290948 TGCCCTTATACATCCACCAAC 57.709 47.619 0.00 0.00 0.00 3.77
652 653 2.578480 TGCCCTTATACATCCACCAACA 59.422 45.455 0.00 0.00 0.00 3.33
653 654 3.010696 TGCCCTTATACATCCACCAACAA 59.989 43.478 0.00 0.00 0.00 2.83
654 655 4.020543 GCCCTTATACATCCACCAACAAA 58.979 43.478 0.00 0.00 0.00 2.83
655 656 4.464597 GCCCTTATACATCCACCAACAAAA 59.535 41.667 0.00 0.00 0.00 2.44
656 657 5.394115 GCCCTTATACATCCACCAACAAAAG 60.394 44.000 0.00 0.00 0.00 2.27
657 658 5.949354 CCCTTATACATCCACCAACAAAAGA 59.051 40.000 0.00 0.00 0.00 2.52
658 659 6.435904 CCCTTATACATCCACCAACAAAAGAA 59.564 38.462 0.00 0.00 0.00 2.52
659 660 7.039363 CCCTTATACATCCACCAACAAAAGAAA 60.039 37.037 0.00 0.00 0.00 2.52
660 661 8.364142 CCTTATACATCCACCAACAAAAGAAAA 58.636 33.333 0.00 0.00 0.00 2.29
661 662 9.757227 CTTATACATCCACCAACAAAAGAAAAA 57.243 29.630 0.00 0.00 0.00 1.94
664 665 7.936496 ACATCCACCAACAAAAGAAAAATTT 57.064 28.000 0.00 0.00 0.00 1.82
665 666 7.984391 ACATCCACCAACAAAAGAAAAATTTC 58.016 30.769 0.00 0.00 37.45 2.17
666 667 7.609532 ACATCCACCAACAAAAGAAAAATTTCA 59.390 29.630 8.47 0.00 39.61 2.69
667 668 7.371126 TCCACCAACAAAAGAAAAATTTCAC 57.629 32.000 8.47 0.00 39.61 3.18
668 669 7.164803 TCCACCAACAAAAGAAAAATTTCACT 58.835 30.769 8.47 0.00 39.61 3.41
669 670 8.314751 TCCACCAACAAAAGAAAAATTTCACTA 58.685 29.630 8.47 0.00 39.61 2.74
670 671 9.108284 CCACCAACAAAAGAAAAATTTCACTAT 57.892 29.630 8.47 0.00 39.61 2.12
671 672 9.919348 CACCAACAAAAGAAAAATTTCACTATG 57.081 29.630 8.47 4.65 39.61 2.23
672 673 9.883142 ACCAACAAAAGAAAAATTTCACTATGA 57.117 25.926 8.47 0.00 39.61 2.15
684 685 9.846248 AAAATTTCACTATGAGTTAACTGATGC 57.154 29.630 14.14 0.00 0.00 3.91
685 686 8.565896 AATTTCACTATGAGTTAACTGATGCA 57.434 30.769 14.14 4.94 0.00 3.96
693 694 4.921515 TGAGTTAACTGATGCACGAACTAC 59.078 41.667 14.14 0.00 0.00 2.73
694 695 5.135508 AGTTAACTGATGCACGAACTACT 57.864 39.130 7.48 0.00 0.00 2.57
695 696 5.162075 AGTTAACTGATGCACGAACTACTC 58.838 41.667 7.48 0.00 0.00 2.59
696 697 3.660501 AACTGATGCACGAACTACTCA 57.339 42.857 0.00 0.00 0.00 3.41
697 698 3.660501 ACTGATGCACGAACTACTCAA 57.339 42.857 0.00 0.00 0.00 3.02
698 699 4.193826 ACTGATGCACGAACTACTCAAT 57.806 40.909 0.00 0.00 0.00 2.57
699 700 3.928992 ACTGATGCACGAACTACTCAATG 59.071 43.478 0.00 0.00 0.00 2.82
700 701 3.261580 TGATGCACGAACTACTCAATGG 58.738 45.455 0.00 0.00 0.00 3.16
746 747 4.377760 AGCCGTTCTCCCCGAGGA 62.378 66.667 0.00 0.00 41.08 3.71
760 761 3.337398 GAGGACATCGACAGAGCAC 57.663 57.895 0.00 0.00 0.00 4.40
765 766 1.869574 CATCGACAGAGCACGACGG 60.870 63.158 0.00 0.00 41.17 4.79
862 863 3.608662 TCGGTGGTTCGAACGGCT 61.609 61.111 21.34 0.00 36.12 5.52
863 864 3.110178 CGGTGGTTCGAACGGCTC 61.110 66.667 21.34 8.62 0.00 4.70
954 965 1.418908 CCGTCCCATCCCAATAGCCT 61.419 60.000 0.00 0.00 0.00 4.58
975 986 2.125512 GCACGACGAGCAATCCCT 60.126 61.111 12.54 0.00 0.00 4.20
1122 1133 1.509004 GACTCTTCGGAGCTTCGCT 59.491 57.895 10.36 0.00 45.43 4.93
1125 1136 0.172352 CTCTTCGGAGCTTCGCTTCT 59.828 55.000 10.36 0.00 39.88 2.85
1182 1193 3.077556 ACGCCCTTCTCCGATGCT 61.078 61.111 0.00 0.00 0.00 3.79
1183 1194 1.756950 ACGCCCTTCTCCGATGCTA 60.757 57.895 0.00 0.00 0.00 3.49
1184 1195 1.006805 CGCCCTTCTCCGATGCTAG 60.007 63.158 0.00 0.00 0.00 3.42
1185 1196 1.369321 GCCCTTCTCCGATGCTAGG 59.631 63.158 0.00 0.00 0.00 3.02
1189 1200 2.427540 CTTCTCCGATGCTAGGGCCG 62.428 65.000 0.00 0.00 37.74 6.13
1281 1292 4.516195 GGAGAGGACGCGGGCTTC 62.516 72.222 12.47 8.22 0.00 3.86
1320 1331 2.441164 GAGGAGCTCGCCAGAGGA 60.441 66.667 7.83 0.00 44.51 3.71
1339 1350 4.662961 TGGTGTGCCTCGAGTGCG 62.663 66.667 12.31 0.00 39.35 5.34
1340 1351 4.664677 GGTGTGCCTCGAGTGCGT 62.665 66.667 12.31 0.00 38.98 5.24
1435 1446 2.856000 AGGTGAGCCTGCCCTGTT 60.856 61.111 0.00 0.00 45.05 3.16
1459 1477 4.201951 CCACGGATTTCGAGGGTG 57.798 61.111 0.00 0.00 44.19 4.61
1476 1494 1.620822 GTGAATTGCAGGACCCTTGT 58.379 50.000 0.00 0.00 0.00 3.16
1490 1508 2.224450 ACCCTTGTACGTTTCCTTCTGG 60.224 50.000 0.00 0.00 0.00 3.86
1493 1511 2.825861 TGTACGTTTCCTTCTGGTCC 57.174 50.000 0.00 0.00 34.23 4.46
1494 1512 2.322658 TGTACGTTTCCTTCTGGTCCT 58.677 47.619 0.00 0.00 34.23 3.85
1496 1514 3.508793 TGTACGTTTCCTTCTGGTCCTAG 59.491 47.826 0.00 0.00 34.23 3.02
1497 1515 2.606378 ACGTTTCCTTCTGGTCCTAGT 58.394 47.619 0.00 0.00 34.23 2.57
1498 1516 3.771216 ACGTTTCCTTCTGGTCCTAGTA 58.229 45.455 0.00 0.00 34.23 1.82
1502 1520 5.279356 CGTTTCCTTCTGGTCCTAGTACTTT 60.279 44.000 0.00 0.00 34.23 2.66
1503 1521 5.740290 TTCCTTCTGGTCCTAGTACTTTG 57.260 43.478 0.00 0.00 34.23 2.77
1507 1525 3.170717 TCTGGTCCTAGTACTTTGTGGG 58.829 50.000 0.00 0.00 0.00 4.61
1508 1526 1.626825 TGGTCCTAGTACTTTGTGGGC 59.373 52.381 0.00 0.23 0.00 5.36
1509 1527 1.626825 GGTCCTAGTACTTTGTGGGCA 59.373 52.381 0.00 0.00 0.00 5.36
1510 1528 2.238898 GGTCCTAGTACTTTGTGGGCAT 59.761 50.000 0.00 0.00 0.00 4.40
1511 1529 3.308188 GGTCCTAGTACTTTGTGGGCATT 60.308 47.826 0.00 0.00 0.00 3.56
1512 1530 3.689649 GTCCTAGTACTTTGTGGGCATTG 59.310 47.826 0.00 0.00 0.00 2.82
1513 1531 3.329520 TCCTAGTACTTTGTGGGCATTGT 59.670 43.478 0.00 0.00 0.00 2.71
1514 1532 4.532916 TCCTAGTACTTTGTGGGCATTGTA 59.467 41.667 0.00 0.00 0.00 2.41
1515 1533 5.190925 TCCTAGTACTTTGTGGGCATTGTAT 59.809 40.000 0.00 0.00 0.00 2.29
1516 1534 5.885912 CCTAGTACTTTGTGGGCATTGTATT 59.114 40.000 0.00 0.00 0.00 1.89
1517 1535 5.643379 AGTACTTTGTGGGCATTGTATTG 57.357 39.130 0.00 0.00 0.00 1.90
1518 1536 3.959535 ACTTTGTGGGCATTGTATTGG 57.040 42.857 0.00 0.00 0.00 3.16
1522 1540 2.175202 TGTGGGCATTGTATTGGGTTC 58.825 47.619 0.00 0.00 0.00 3.62
1524 1542 2.765699 GTGGGCATTGTATTGGGTTCAT 59.234 45.455 0.00 0.00 0.00 2.57
1533 1551 4.584874 TGTATTGGGTTCATACACCACTG 58.415 43.478 0.00 0.00 38.79 3.66
1535 1553 0.321210 TGGGTTCATACACCACTGCG 60.321 55.000 0.00 0.00 38.79 5.18
1538 1556 1.011968 GTTCATACACCACTGCGCGA 61.012 55.000 12.10 0.00 0.00 5.87
1545 1563 1.153823 ACCACTGCGCGAGTACATC 60.154 57.895 12.10 0.00 31.73 3.06
1550 1568 0.917259 CTGCGCGAGTACATCAGTTC 59.083 55.000 12.10 0.00 0.00 3.01
1553 1571 1.802880 GCGCGAGTACATCAGTTCCAT 60.803 52.381 12.10 0.00 0.00 3.41
1554 1572 2.540515 CGCGAGTACATCAGTTCCATT 58.459 47.619 0.00 0.00 0.00 3.16
1561 1579 3.154827 ACATCAGTTCCATTTTCGGGT 57.845 42.857 0.00 0.00 0.00 5.28
1591 1611 7.730364 TTACTCTTGAAGCGAAGAAAATTCT 57.270 32.000 0.00 0.00 39.74 2.40
1592 1612 5.995055 ACTCTTGAAGCGAAGAAAATTCTG 58.005 37.500 0.00 0.00 37.65 3.02
1599 1619 3.619038 AGCGAAGAAAATTCTGTCGATCC 59.381 43.478 21.07 10.71 38.69 3.36
1629 1649 3.391296 AGAGTCCAAGCACAAAAGGTAGA 59.609 43.478 0.00 0.00 0.00 2.59
1632 1652 4.042187 AGTCCAAGCACAAAAGGTAGAGAT 59.958 41.667 0.00 0.00 0.00 2.75
1635 1655 4.083110 CCAAGCACAAAAGGTAGAGATGTG 60.083 45.833 0.00 0.00 43.17 3.21
1637 1657 5.483685 AGCACAAAAGGTAGAGATGTGTA 57.516 39.130 6.14 0.00 42.48 2.90
1648 1668 6.217294 GGTAGAGATGTGTACCTGAATTAGC 58.783 44.000 8.82 0.00 39.16 3.09
1652 1672 1.208535 TGTGTACCTGAATTAGCCCCG 59.791 52.381 0.00 0.00 0.00 5.73
1703 1734 0.464036 TACCATTCTGTGCGGGCTAG 59.536 55.000 0.00 0.00 0.00 3.42
1710 1741 2.266055 GTGCGGGCTAGAGCAAGT 59.734 61.111 9.08 0.00 45.61 3.16
1736 1770 6.144080 GCGCTAGTAAATCATAAGTACTGGTG 59.856 42.308 0.00 0.00 38.88 4.17
1830 1864 9.295825 TGTAATTTGGAATGATAACTTGACTGT 57.704 29.630 0.00 0.00 0.00 3.55
1837 1871 8.514594 TGGAATGATAACTTGACTGTTGATTTC 58.485 33.333 0.00 0.00 0.00 2.17
1880 1914 2.808543 AGTCAAAGCCGTCATCAACTTC 59.191 45.455 0.00 0.00 0.00 3.01
1990 2024 9.712305 TTTTGGAGTGTTTTCTTTTGTAATTGA 57.288 25.926 0.00 0.00 0.00 2.57
1991 2025 9.883142 TTTGGAGTGTTTTCTTTTGTAATTGAT 57.117 25.926 0.00 0.00 0.00 2.57
2219 2259 7.717436 TGTACTTGTGTGAATCAAATTACCAGA 59.283 33.333 0.00 0.00 0.00 3.86
2243 2283 5.643339 AGCGCTATAAGAATTTTGAGTCG 57.357 39.130 8.99 0.00 0.00 4.18
2278 2320 9.618890 TCAATCTTTATCTGTTATTCCCTCAAG 57.381 33.333 0.00 0.00 0.00 3.02
2393 2435 9.727627 ACTACCTTCGTTTCTAATTATAAGACG 57.272 33.333 9.73 9.73 0.00 4.18
2439 2481 7.773690 ACTGCCAAAACGTCTTATATTTAGGAT 59.226 33.333 0.00 0.00 0.00 3.24
2472 2514 9.220767 GAGTATGAAGTTGGATAAGAAAACACT 57.779 33.333 0.00 0.00 0.00 3.55
2593 2692 9.520515 ACAGAAGTTGTTCATAATTTGACCTAT 57.479 29.630 0.00 0.00 36.31 2.57
2594 2693 9.994432 CAGAAGTTGTTCATAATTTGACCTATC 57.006 33.333 0.00 0.00 34.82 2.08
2670 2769 2.665165 TGGACACCAATCAAGCACTTT 58.335 42.857 0.00 0.00 0.00 2.66
2717 2816 9.764363 TGCATCTTCGTTGGGATTATATATATC 57.236 33.333 0.00 0.00 0.00 1.63
3058 3157 3.368843 GCAAAGGTATGCACTGAATTTGC 59.631 43.478 17.11 17.11 45.70 3.68
3131 3230 1.977293 TTTTGGCACCCAAGGTTGCC 61.977 55.000 19.61 19.61 44.84 4.52
3325 3433 5.892568 ACACGGATAAGTAGTTCACTGATC 58.107 41.667 0.00 0.00 42.58 2.92
3413 3521 7.800380 GCATCTAATAGAATGACGGACAATTTG 59.200 37.037 0.00 0.00 0.00 2.32
3449 3557 9.585099 TTCAAATGGATTAAACATACATTGCTC 57.415 29.630 0.00 0.00 32.60 4.26
3641 3764 4.588899 TGATGAAGGTTGGTTATGGACAG 58.411 43.478 0.00 0.00 0.00 3.51
3740 3872 4.762289 ATCCGTCAGCTCCTTAAAATCT 57.238 40.909 0.00 0.00 0.00 2.40
3741 3873 4.553330 TCCGTCAGCTCCTTAAAATCTT 57.447 40.909 0.00 0.00 0.00 2.40
3742 3874 5.670792 TCCGTCAGCTCCTTAAAATCTTA 57.329 39.130 0.00 0.00 0.00 2.10
3743 3875 5.661458 TCCGTCAGCTCCTTAAAATCTTAG 58.339 41.667 0.00 0.00 0.00 2.18
3744 3876 4.811557 CCGTCAGCTCCTTAAAATCTTAGG 59.188 45.833 0.00 0.00 0.00 2.69
3745 3877 5.395324 CCGTCAGCTCCTTAAAATCTTAGGA 60.395 44.000 0.00 0.00 0.00 2.94
3746 3878 6.284459 CGTCAGCTCCTTAAAATCTTAGGAT 58.716 40.000 0.00 0.00 0.00 3.24
3747 3879 6.422400 CGTCAGCTCCTTAAAATCTTAGGATC 59.578 42.308 0.00 0.00 0.00 3.36
3748 3880 7.505258 GTCAGCTCCTTAAAATCTTAGGATCT 58.495 38.462 0.00 0.00 0.00 2.75
3749 3881 7.440856 GTCAGCTCCTTAAAATCTTAGGATCTG 59.559 40.741 12.64 12.64 41.55 2.90
3750 3882 6.204495 CAGCTCCTTAAAATCTTAGGATCTGC 59.796 42.308 7.92 1.42 36.52 4.26
3751 3883 5.178438 GCTCCTTAAAATCTTAGGATCTGCG 59.822 44.000 0.00 0.00 0.00 5.18
3752 3884 5.611374 TCCTTAAAATCTTAGGATCTGCGG 58.389 41.667 0.00 0.00 0.00 5.69
3753 3885 5.365605 TCCTTAAAATCTTAGGATCTGCGGA 59.634 40.000 0.00 0.00 0.00 5.54
3754 3886 5.698545 CCTTAAAATCTTAGGATCTGCGGAG 59.301 44.000 0.00 0.00 0.00 4.63
3777 3909 0.603707 CTGTTTGCTCGCTCCAGGAA 60.604 55.000 0.00 0.00 0.00 3.36
3832 3964 4.083862 GTGGAGCGGAGGGACACC 62.084 72.222 0.00 0.00 35.10 4.16
3863 3995 1.739067 AAAGTTAGAGCATCACCCGC 58.261 50.000 0.00 0.00 37.82 6.13
3952 4084 6.191657 TCAGCATGTCATATTGGTCCTTAT 57.808 37.500 0.00 0.00 37.40 1.73
3985 4117 5.432390 AGTCTTGGTACTAGGAGATAGGTCA 59.568 44.000 0.00 0.00 35.63 4.02
4229 4361 5.882557 CACTTATACCATCTTGCCTTCTTGT 59.117 40.000 0.00 0.00 0.00 3.16
4233 4365 3.565307 ACCATCTTGCCTTCTTGTTTCA 58.435 40.909 0.00 0.00 0.00 2.69
4248 4380 3.420893 TGTTTCACTAAATGCCCTCAGG 58.579 45.455 0.00 0.00 0.00 3.86
4250 4382 3.806949 TTCACTAAATGCCCTCAGGTT 57.193 42.857 0.00 0.00 34.57 3.50
4253 4385 3.012518 CACTAAATGCCCTCAGGTTCAG 58.987 50.000 0.00 0.00 34.57 3.02
4264 4396 4.163078 CCCTCAGGTTCAGTATTGTGAGAT 59.837 45.833 5.47 0.00 34.57 2.75
4269 4401 8.547967 TCAGGTTCAGTATTGTGAGATTTAAC 57.452 34.615 0.00 0.00 0.00 2.01
4285 4420 9.559732 TGAGATTTAACATACCATGATACCTTG 57.440 33.333 0.00 0.00 0.00 3.61
4645 4781 1.338105 GGAAAAGGGCATGTTTCTGGC 60.338 52.381 6.51 0.00 40.76 4.85
4788 4925 7.676004 TGGTTAATTGACAGTCAGAACAGATA 58.324 34.615 19.15 0.09 0.00 1.98
4818 4955 6.647212 TTCGTAATGCTCACTTCAGTTATG 57.353 37.500 0.00 0.00 0.00 1.90
4895 5032 4.269844 GCTTCGAAGTTGAAAATTTTGGCA 59.730 37.500 25.24 0.00 28.78 4.92
5125 5263 3.337358 TCACTGCAATGTACACTGGATG 58.663 45.455 6.43 4.51 0.00 3.51
5273 5432 7.253883 GCAAATTGTAGTGCATTGAAGCTATTC 60.254 37.037 0.00 0.00 40.58 1.75
5274 5433 5.469373 TTGTAGTGCATTGAAGCTATTCG 57.531 39.130 0.00 0.00 38.34 3.34
5304 5464 4.560128 CATCACCGGTCATTGGATAGTAG 58.440 47.826 2.59 0.00 0.00 2.57
5311 5552 6.658391 ACCGGTCATTGGATAGTAGTAGTATC 59.342 42.308 14.40 14.40 31.31 2.24
5383 5628 3.108289 CGGCTGACGCACTCTGTG 61.108 66.667 0.00 0.00 38.10 3.66
5387 5632 2.025969 CTGACGCACTCTGTGGCTG 61.026 63.158 0.00 0.00 36.69 4.85
5402 5647 8.806146 ACTCTGTGGCTGAATTATTTTGTTATT 58.194 29.630 0.00 0.00 0.00 1.40
5424 5670 1.303317 GGCCAGTTTGGTGACCGAT 60.303 57.895 0.00 0.00 40.46 4.18
5468 5728 4.056050 GTCAAACGACCAGATGTAACAGT 58.944 43.478 0.00 0.00 0.00 3.55
5473 5746 2.350522 GACCAGATGTAACAGTGCAGG 58.649 52.381 0.00 0.00 0.00 4.85
5485 5758 1.134877 CAGTGCAGGACTCGTCATGAT 60.135 52.381 15.03 0.00 43.36 2.45
5487 5760 1.135915 GTGCAGGACTCGTCATGATCT 59.864 52.381 15.03 0.00 43.36 2.75
5500 5780 8.683615 ACTCGTCATGATCTTGTACAGTATAAA 58.316 33.333 0.00 0.00 0.00 1.40
5533 5817 8.380743 ACGTGGATTATTTGTACAAGTTACAA 57.619 30.769 9.05 0.00 35.84 2.41
5543 5827 8.902540 TTTGTACAAGTTACAAGTGATGATCT 57.097 30.769 8.56 0.00 38.47 2.75
5547 5831 6.169094 ACAAGTTACAAGTGATGATCTCCTG 58.831 40.000 0.00 0.00 0.00 3.86
5555 5839 5.534207 AGTGATGATCTCCTGAGCTAAAG 57.466 43.478 0.00 0.00 0.00 1.85
5615 5917 1.480137 AGCTTGGAGATCAGAGAACCG 59.520 52.381 0.00 0.00 0.00 4.44
5616 5918 1.205893 GCTTGGAGATCAGAGAACCGT 59.794 52.381 0.00 0.00 0.00 4.83
5620 5922 5.563867 GCTTGGAGATCAGAGAACCGTATAG 60.564 48.000 0.00 0.00 0.00 1.31
5622 5924 5.309638 TGGAGATCAGAGAACCGTATAGAG 58.690 45.833 0.00 0.00 0.00 2.43
5623 5925 5.071923 TGGAGATCAGAGAACCGTATAGAGA 59.928 44.000 0.00 0.00 0.00 3.10
5625 5927 5.931294 AGATCAGAGAACCGTATAGAGACA 58.069 41.667 0.00 0.00 0.00 3.41
5626 5928 6.539173 AGATCAGAGAACCGTATAGAGACAT 58.461 40.000 0.00 0.00 0.00 3.06
5628 5930 8.158132 AGATCAGAGAACCGTATAGAGACATAA 58.842 37.037 0.00 0.00 0.00 1.90
5630 5932 8.693120 TCAGAGAACCGTATAGAGACATAAAT 57.307 34.615 0.00 0.00 0.00 1.40
5631 5933 8.784994 TCAGAGAACCGTATAGAGACATAAATC 58.215 37.037 0.00 0.00 0.00 2.17
5632 5934 8.024285 CAGAGAACCGTATAGAGACATAAATCC 58.976 40.741 0.00 0.00 0.00 3.01
5633 5935 7.945664 AGAGAACCGTATAGAGACATAAATCCT 59.054 37.037 0.00 0.00 0.00 3.24
5634 5936 8.113173 AGAACCGTATAGAGACATAAATCCTC 57.887 38.462 0.00 0.00 0.00 3.71
5635 5937 7.724506 AGAACCGTATAGAGACATAAATCCTCA 59.275 37.037 0.00 0.00 0.00 3.86
5636 5938 8.423906 AACCGTATAGAGACATAAATCCTCAT 57.576 34.615 0.00 0.00 0.00 2.90
5637 5939 9.529823 AACCGTATAGAGACATAAATCCTCATA 57.470 33.333 0.00 0.00 0.00 2.15
5638 5940 8.958506 ACCGTATAGAGACATAAATCCTCATAC 58.041 37.037 0.00 0.00 0.00 2.39
5796 6101 2.021355 AGTCCTGGTAGTACTCGTCG 57.979 55.000 0.00 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.278513 TGGTGGTTCTTGGGGCCG 62.279 66.667 0.00 0.00 0.00 6.13
11 12 2.283173 CTGGTGGTTCTTGGGGCC 60.283 66.667 0.00 0.00 0.00 5.80
12 13 1.603739 GTCTGGTGGTTCTTGGGGC 60.604 63.158 0.00 0.00 0.00 5.80
13 14 1.302511 CGTCTGGTGGTTCTTGGGG 60.303 63.158 0.00 0.00 0.00 4.96
14 15 0.107831 TTCGTCTGGTGGTTCTTGGG 59.892 55.000 0.00 0.00 0.00 4.12
15 16 1.070134 TCTTCGTCTGGTGGTTCTTGG 59.930 52.381 0.00 0.00 0.00 3.61
16 17 2.526304 TCTTCGTCTGGTGGTTCTTG 57.474 50.000 0.00 0.00 0.00 3.02
17 18 2.434702 AGTTCTTCGTCTGGTGGTTCTT 59.565 45.455 0.00 0.00 0.00 2.52
18 19 2.036089 GAGTTCTTCGTCTGGTGGTTCT 59.964 50.000 0.00 0.00 0.00 3.01
19 20 2.405172 GAGTTCTTCGTCTGGTGGTTC 58.595 52.381 0.00 0.00 0.00 3.62
20 21 1.070289 GGAGTTCTTCGTCTGGTGGTT 59.930 52.381 0.00 0.00 0.00 3.67
21 22 0.680061 GGAGTTCTTCGTCTGGTGGT 59.320 55.000 0.00 0.00 0.00 4.16
22 23 0.037232 GGGAGTTCTTCGTCTGGTGG 60.037 60.000 0.00 0.00 0.00 4.61
23 24 0.679505 TGGGAGTTCTTCGTCTGGTG 59.320 55.000 0.00 0.00 0.00 4.17
24 25 0.680061 GTGGGAGTTCTTCGTCTGGT 59.320 55.000 0.00 0.00 0.00 4.00
25 26 0.969894 AGTGGGAGTTCTTCGTCTGG 59.030 55.000 0.00 0.00 0.00 3.86
26 27 1.341531 ACAGTGGGAGTTCTTCGTCTG 59.658 52.381 0.00 0.00 0.00 3.51
27 28 1.614413 GACAGTGGGAGTTCTTCGTCT 59.386 52.381 0.00 0.00 0.00 4.18
28 29 1.614413 AGACAGTGGGAGTTCTTCGTC 59.386 52.381 0.00 0.00 0.00 4.20
29 30 1.614413 GAGACAGTGGGAGTTCTTCGT 59.386 52.381 0.00 0.00 0.00 3.85
30 31 1.067495 GGAGACAGTGGGAGTTCTTCG 60.067 57.143 0.00 0.00 0.00 3.79
31 32 2.028567 CAGGAGACAGTGGGAGTTCTTC 60.029 54.545 0.00 0.00 0.00 2.87
32 33 1.974236 CAGGAGACAGTGGGAGTTCTT 59.026 52.381 0.00 0.00 0.00 2.52
33 34 1.638529 CAGGAGACAGTGGGAGTTCT 58.361 55.000 0.00 0.00 0.00 3.01
34 35 0.036858 GCAGGAGACAGTGGGAGTTC 60.037 60.000 0.00 0.00 0.00 3.01
35 36 1.484444 GGCAGGAGACAGTGGGAGTT 61.484 60.000 0.00 0.00 0.00 3.01
36 37 1.915769 GGCAGGAGACAGTGGGAGT 60.916 63.158 0.00 0.00 0.00 3.85
37 38 1.611851 AGGCAGGAGACAGTGGGAG 60.612 63.158 0.00 0.00 0.00 4.30
38 39 1.915266 CAGGCAGGAGACAGTGGGA 60.915 63.158 0.00 0.00 0.00 4.37
39 40 2.667418 CAGGCAGGAGACAGTGGG 59.333 66.667 0.00 0.00 0.00 4.61
40 41 1.260538 TAGCAGGCAGGAGACAGTGG 61.261 60.000 0.00 0.00 0.00 4.00
41 42 0.175302 CTAGCAGGCAGGAGACAGTG 59.825 60.000 0.00 0.00 0.00 3.66
42 43 1.612395 GCTAGCAGGCAGGAGACAGT 61.612 60.000 10.63 0.00 0.00 3.55
43 44 1.143620 GCTAGCAGGCAGGAGACAG 59.856 63.158 10.63 0.00 0.00 3.51
44 45 1.610379 TGCTAGCAGGCAGGAGACA 60.610 57.895 14.93 0.00 37.29 3.41
45 46 1.153469 GTGCTAGCAGGCAGGAGAC 60.153 63.158 20.03 0.00 43.25 3.36
46 47 2.714991 CGTGCTAGCAGGCAGGAGA 61.715 63.158 23.14 0.00 46.81 3.71
47 48 2.202851 CGTGCTAGCAGGCAGGAG 60.203 66.667 23.14 3.67 46.81 3.69
49 50 1.812922 CTTCGTGCTAGCAGGCAGG 60.813 63.158 28.32 17.48 45.72 4.85
50 51 0.390340 TTCTTCGTGCTAGCAGGCAG 60.390 55.000 28.32 26.60 43.25 4.85
51 52 0.670546 GTTCTTCGTGCTAGCAGGCA 60.671 55.000 28.32 19.29 40.15 4.75
52 53 1.362406 GGTTCTTCGTGCTAGCAGGC 61.362 60.000 28.32 15.85 0.00 4.85
53 54 0.037326 TGGTTCTTCGTGCTAGCAGG 60.037 55.000 27.48 27.48 0.00 4.85
54 55 1.728971 CTTGGTTCTTCGTGCTAGCAG 59.271 52.381 20.03 12.53 0.00 4.24
55 56 1.343142 TCTTGGTTCTTCGTGCTAGCA 59.657 47.619 14.93 14.93 0.00 3.49
56 57 1.727335 GTCTTGGTTCTTCGTGCTAGC 59.273 52.381 8.10 8.10 0.00 3.42
57 58 3.305398 AGTCTTGGTTCTTCGTGCTAG 57.695 47.619 0.00 0.00 0.00 3.42
58 59 3.746045 AAGTCTTGGTTCTTCGTGCTA 57.254 42.857 0.00 0.00 0.00 3.49
59 60 2.614057 CAAAGTCTTGGTTCTTCGTGCT 59.386 45.455 0.00 0.00 0.00 4.40
60 61 2.287009 CCAAAGTCTTGGTTCTTCGTGC 60.287 50.000 0.00 0.00 46.25 5.34
61 62 3.609103 CCAAAGTCTTGGTTCTTCGTG 57.391 47.619 0.00 0.00 46.25 4.35
71 72 0.877071 ACAGCGATGCCAAAGTCTTG 59.123 50.000 0.00 0.00 0.00 3.02
72 73 1.267806 CAACAGCGATGCCAAAGTCTT 59.732 47.619 0.00 0.00 0.00 3.01
73 74 0.877071 CAACAGCGATGCCAAAGTCT 59.123 50.000 0.00 0.00 0.00 3.24
74 75 0.109597 CCAACAGCGATGCCAAAGTC 60.110 55.000 0.00 0.00 0.00 3.01
75 76 1.526575 CCCAACAGCGATGCCAAAGT 61.527 55.000 0.00 0.00 0.00 2.66
76 77 1.213537 CCCAACAGCGATGCCAAAG 59.786 57.895 0.00 0.00 0.00 2.77
77 78 2.929903 GCCCAACAGCGATGCCAAA 61.930 57.895 0.00 0.00 0.00 3.28
78 79 3.372730 GCCCAACAGCGATGCCAA 61.373 61.111 0.00 0.00 0.00 4.52
79 80 4.349503 AGCCCAACAGCGATGCCA 62.350 61.111 0.00 0.00 38.01 4.92
80 81 3.512516 GAGCCCAACAGCGATGCC 61.513 66.667 0.00 0.00 38.01 4.40
81 82 3.869272 CGAGCCCAACAGCGATGC 61.869 66.667 0.00 0.00 38.01 3.91
82 83 1.699656 CTTCGAGCCCAACAGCGATG 61.700 60.000 0.00 0.00 38.01 3.84
83 84 1.448540 CTTCGAGCCCAACAGCGAT 60.449 57.895 0.00 0.00 38.01 4.58
84 85 2.048222 CTTCGAGCCCAACAGCGA 60.048 61.111 0.00 0.00 38.01 4.93
85 86 2.048222 TCTTCGAGCCCAACAGCG 60.048 61.111 0.00 0.00 38.01 5.18
86 87 1.743252 CCTCTTCGAGCCCAACAGC 60.743 63.158 0.00 0.00 0.00 4.40
87 88 0.108424 CTCCTCTTCGAGCCCAACAG 60.108 60.000 0.00 0.00 0.00 3.16
88 89 1.544825 CCTCCTCTTCGAGCCCAACA 61.545 60.000 0.00 0.00 0.00 3.33
89 90 1.219393 CCTCCTCTTCGAGCCCAAC 59.781 63.158 0.00 0.00 0.00 3.77
90 91 0.544357 TTCCTCCTCTTCGAGCCCAA 60.544 55.000 0.00 0.00 0.00 4.12
91 92 0.972983 CTTCCTCCTCTTCGAGCCCA 60.973 60.000 0.00 0.00 0.00 5.36
92 93 1.681486 CCTTCCTCCTCTTCGAGCCC 61.681 65.000 0.00 0.00 0.00 5.19
93 94 1.681486 CCCTTCCTCCTCTTCGAGCC 61.681 65.000 0.00 0.00 0.00 4.70
94 95 1.819905 CCCTTCCTCCTCTTCGAGC 59.180 63.158 0.00 0.00 0.00 5.03
95 96 0.686112 AGCCCTTCCTCCTCTTCGAG 60.686 60.000 0.00 0.00 0.00 4.04
96 97 0.684805 GAGCCCTTCCTCCTCTTCGA 60.685 60.000 0.00 0.00 0.00 3.71
97 98 1.819905 GAGCCCTTCCTCCTCTTCG 59.180 63.158 0.00 0.00 0.00 3.79
98 99 0.684805 TCGAGCCCTTCCTCCTCTTC 60.685 60.000 0.00 0.00 0.00 2.87
99 100 0.686112 CTCGAGCCCTTCCTCCTCTT 60.686 60.000 0.00 0.00 0.00 2.85
100 101 1.076339 CTCGAGCCCTTCCTCCTCT 60.076 63.158 0.00 0.00 0.00 3.69
101 102 0.684805 TTCTCGAGCCCTTCCTCCTC 60.685 60.000 7.81 0.00 0.00 3.71
102 103 0.973496 GTTCTCGAGCCCTTCCTCCT 60.973 60.000 7.81 0.00 0.00 3.69
103 104 1.518302 GTTCTCGAGCCCTTCCTCC 59.482 63.158 7.81 0.00 0.00 4.30
104 105 1.139947 CGTTCTCGAGCCCTTCCTC 59.860 63.158 7.81 0.00 39.71 3.71
105 106 2.352032 CCGTTCTCGAGCCCTTCCT 61.352 63.158 7.81 0.00 39.71 3.36
106 107 2.184579 CCGTTCTCGAGCCCTTCC 59.815 66.667 7.81 0.00 39.71 3.46
107 108 1.446272 CACCGTTCTCGAGCCCTTC 60.446 63.158 7.81 0.00 39.71 3.46
108 109 2.657237 CACCGTTCTCGAGCCCTT 59.343 61.111 7.81 0.00 39.71 3.95
109 110 3.382832 CCACCGTTCTCGAGCCCT 61.383 66.667 7.81 0.00 39.71 5.19
110 111 3.692406 ACCACCGTTCTCGAGCCC 61.692 66.667 7.81 0.00 39.71 5.19
111 112 2.432628 CACCACCGTTCTCGAGCC 60.433 66.667 7.81 0.00 39.71 4.70
112 113 2.432628 CCACCACCGTTCTCGAGC 60.433 66.667 7.81 0.00 39.71 5.03
113 114 2.261671 CCCACCACCGTTCTCGAG 59.738 66.667 5.93 5.93 39.71 4.04
114 115 3.307906 CCCCACCACCGTTCTCGA 61.308 66.667 0.00 0.00 39.71 4.04
115 116 3.296709 CTCCCCACCACCGTTCTCG 62.297 68.421 0.00 0.00 0.00 4.04
116 117 2.663196 CTCCCCACCACCGTTCTC 59.337 66.667 0.00 0.00 0.00 2.87
117 118 2.928396 CCTCCCCACCACCGTTCT 60.928 66.667 0.00 0.00 0.00 3.01
118 119 4.029809 CCCTCCCCACCACCGTTC 62.030 72.222 0.00 0.00 0.00 3.95
121 122 4.726254 TACCCCTCCCCACCACCG 62.726 72.222 0.00 0.00 0.00 4.94
122 123 2.691252 CTACCCCTCCCCACCACC 60.691 72.222 0.00 0.00 0.00 4.61
123 124 2.691252 CCTACCCCTCCCCACCAC 60.691 72.222 0.00 0.00 0.00 4.16
124 125 2.877383 TCCTACCCCTCCCCACCA 60.877 66.667 0.00 0.00 0.00 4.17
125 126 2.040779 CTCCTACCCCTCCCCACC 60.041 72.222 0.00 0.00 0.00 4.61
126 127 2.040779 CCTCCTACCCCTCCCCAC 60.041 72.222 0.00 0.00 0.00 4.61
127 128 2.204721 TCCTCCTACCCCTCCCCA 60.205 66.667 0.00 0.00 0.00 4.96
128 129 2.286213 GTCCTCCTACCCCTCCCC 59.714 72.222 0.00 0.00 0.00 4.81
129 130 2.123382 CGTCCTCCTACCCCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
130 131 2.123382 CCGTCCTCCTACCCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
131 132 1.757340 CACCGTCCTCCTACCCCTC 60.757 68.421 0.00 0.00 0.00 4.30
132 133 2.363361 CACCGTCCTCCTACCCCT 59.637 66.667 0.00 0.00 0.00 4.79
133 134 3.468140 GCACCGTCCTCCTACCCC 61.468 72.222 0.00 0.00 0.00 4.95
134 135 2.363925 AGCACCGTCCTCCTACCC 60.364 66.667 0.00 0.00 0.00 3.69
135 136 2.772691 CGAGCACCGTCCTCCTACC 61.773 68.421 0.00 0.00 0.00 3.18
136 137 2.772691 CCGAGCACCGTCCTCCTAC 61.773 68.421 0.00 0.00 36.31 3.18
137 138 2.439701 CCGAGCACCGTCCTCCTA 60.440 66.667 0.00 0.00 36.31 2.94
156 157 4.521062 AGAGTCGCATGCCCGCTC 62.521 66.667 13.15 16.07 34.16 5.03
157 158 4.827087 CAGAGTCGCATGCCCGCT 62.827 66.667 13.15 7.29 0.00 5.52
167 168 3.816920 CGACAACGCGCAGAGTCG 61.817 66.667 24.12 24.12 41.76 4.18
168 169 3.470567 CCGACAACGCGCAGAGTC 61.471 66.667 5.73 10.60 41.76 3.36
182 183 2.094390 AGCTATTTAAGTCGTGTGCCGA 60.094 45.455 0.00 0.00 45.00 5.54
183 184 2.029244 CAGCTATTTAAGTCGTGTGCCG 59.971 50.000 0.00 0.00 38.13 5.69
184 185 2.223044 GCAGCTATTTAAGTCGTGTGCC 60.223 50.000 0.00 0.00 0.00 5.01
185 186 2.534939 CGCAGCTATTTAAGTCGTGTGC 60.535 50.000 0.00 0.00 0.00 4.57
186 187 2.029244 CCGCAGCTATTTAAGTCGTGTG 59.971 50.000 0.00 0.00 0.00 3.82
187 188 2.268298 CCGCAGCTATTTAAGTCGTGT 58.732 47.619 0.00 0.00 0.00 4.49
188 189 1.004927 GCCGCAGCTATTTAAGTCGTG 60.005 52.381 0.00 0.00 35.50 4.35
189 190 1.287425 GCCGCAGCTATTTAAGTCGT 58.713 50.000 0.00 0.00 35.50 4.34
190 191 0.582005 GGCCGCAGCTATTTAAGTCG 59.418 55.000 0.00 0.00 39.73 4.18
191 192 1.599542 CTGGCCGCAGCTATTTAAGTC 59.400 52.381 0.00 0.00 39.73 3.01
192 193 1.668419 CTGGCCGCAGCTATTTAAGT 58.332 50.000 0.00 0.00 39.73 2.24
193 194 0.947244 CCTGGCCGCAGCTATTTAAG 59.053 55.000 0.00 0.00 39.73 1.85
194 195 1.101049 GCCTGGCCGCAGCTATTTAA 61.101 55.000 7.66 0.00 39.73 1.52
195 196 1.525995 GCCTGGCCGCAGCTATTTA 60.526 57.895 7.66 0.00 39.73 1.40
196 197 2.830370 GCCTGGCCGCAGCTATTT 60.830 61.111 7.66 0.00 39.73 1.40
205 206 4.598894 CCTCATCTCGCCTGGCCG 62.599 72.222 14.12 8.64 0.00 6.13
206 207 4.925861 GCCTCATCTCGCCTGGCC 62.926 72.222 14.12 0.00 37.81 5.36
207 208 2.433231 CTAGCCTCATCTCGCCTGGC 62.433 65.000 9.11 9.11 43.52 4.85
208 209 1.664873 CTAGCCTCATCTCGCCTGG 59.335 63.158 0.00 0.00 0.00 4.45
209 210 1.112315 ACCTAGCCTCATCTCGCCTG 61.112 60.000 0.00 0.00 0.00 4.85
210 211 0.825840 GACCTAGCCTCATCTCGCCT 60.826 60.000 0.00 0.00 0.00 5.52
211 212 1.663173 GACCTAGCCTCATCTCGCC 59.337 63.158 0.00 0.00 0.00 5.54
212 213 1.284408 CGACCTAGCCTCATCTCGC 59.716 63.158 0.00 0.00 0.00 5.03
213 214 1.953017 CCGACCTAGCCTCATCTCG 59.047 63.158 0.00 0.00 0.00 4.04
214 215 1.663173 GCCGACCTAGCCTCATCTC 59.337 63.158 0.00 0.00 0.00 2.75
215 216 2.196925 CGCCGACCTAGCCTCATCT 61.197 63.158 0.00 0.00 0.00 2.90
216 217 2.336809 CGCCGACCTAGCCTCATC 59.663 66.667 0.00 0.00 0.00 2.92
217 218 3.917760 GCGCCGACCTAGCCTCAT 61.918 66.667 0.00 0.00 0.00 2.90
219 220 4.874977 GTGCGCCGACCTAGCCTC 62.875 72.222 4.18 0.00 0.00 4.70
228 229 1.655099 GTTATTTAAGTCGTGCGCCGA 59.345 47.619 15.44 15.44 45.00 5.54
229 230 1.267186 GGTTATTTAAGTCGTGCGCCG 60.267 52.381 4.18 8.64 38.13 6.46
230 231 1.267186 CGGTTATTTAAGTCGTGCGCC 60.267 52.381 4.18 0.00 0.00 6.53
231 232 1.849348 GCGGTTATTTAAGTCGTGCGC 60.849 52.381 0.00 0.00 0.00 6.09
232 233 1.588082 CGCGGTTATTTAAGTCGTGCG 60.588 52.381 0.00 0.00 36.96 5.34
233 234 1.267186 CCGCGGTTATTTAAGTCGTGC 60.267 52.381 19.50 0.00 0.00 5.34
234 235 1.267186 GCCGCGGTTATTTAAGTCGTG 60.267 52.381 28.70 0.00 0.00 4.35
235 236 1.001624 GCCGCGGTTATTTAAGTCGT 58.998 50.000 28.70 0.00 0.00 4.34
236 237 0.302589 GGCCGCGGTTATTTAAGTCG 59.697 55.000 28.70 0.00 0.00 4.18
237 238 1.329599 CTGGCCGCGGTTATTTAAGTC 59.670 52.381 28.70 5.15 0.00 3.01
238 239 1.375551 CTGGCCGCGGTTATTTAAGT 58.624 50.000 28.70 0.00 0.00 2.24
239 240 0.028902 GCTGGCCGCGGTTATTTAAG 59.971 55.000 28.70 14.16 0.00 1.85
240 241 1.378124 GGCTGGCCGCGGTTATTTAA 61.378 55.000 28.70 3.72 40.44 1.52
241 242 1.820481 GGCTGGCCGCGGTTATTTA 60.820 57.895 28.70 6.00 40.44 1.40
242 243 3.138128 GGCTGGCCGCGGTTATTT 61.138 61.111 28.70 0.00 40.44 1.40
243 244 4.418328 TGGCTGGCCGCGGTTATT 62.418 61.111 28.70 0.00 40.44 1.40
244 245 4.856801 CTGGCTGGCCGCGGTTAT 62.857 66.667 28.70 0.00 40.44 1.89
252 253 4.746309 TGCACCATCTGGCTGGCC 62.746 66.667 4.43 4.43 40.15 5.36
253 254 3.446570 GTGCACCATCTGGCTGGC 61.447 66.667 5.22 0.00 40.15 4.85
254 255 2.034532 TGTGCACCATCTGGCTGG 59.965 61.111 15.69 0.00 42.35 4.85
255 256 2.697761 GCTGTGCACCATCTGGCTG 61.698 63.158 15.69 0.00 39.32 4.85
256 257 2.360852 GCTGTGCACCATCTGGCT 60.361 61.111 15.69 0.00 39.32 4.75
257 258 1.930908 GAAGCTGTGCACCATCTGGC 61.931 60.000 15.69 8.88 39.32 4.85
258 259 0.607217 TGAAGCTGTGCACCATCTGG 60.607 55.000 15.69 0.00 42.17 3.86
259 260 1.241165 TTGAAGCTGTGCACCATCTG 58.759 50.000 15.69 0.52 0.00 2.90
260 261 1.816835 CATTGAAGCTGTGCACCATCT 59.183 47.619 15.69 5.56 0.00 2.90
261 262 1.734707 GCATTGAAGCTGTGCACCATC 60.735 52.381 15.69 7.78 38.68 3.51
262 263 0.245539 GCATTGAAGCTGTGCACCAT 59.754 50.000 15.69 0.00 38.68 3.55
263 264 1.661480 GCATTGAAGCTGTGCACCA 59.339 52.632 15.69 0.85 38.68 4.17
264 265 1.443194 CGCATTGAAGCTGTGCACC 60.443 57.895 15.69 0.00 38.75 5.01
265 266 1.443194 CCGCATTGAAGCTGTGCAC 60.443 57.895 10.75 10.75 38.75 4.57
266 267 2.956194 CCGCATTGAAGCTGTGCA 59.044 55.556 12.27 0.00 38.75 4.57
267 268 2.505557 GCCGCATTGAAGCTGTGC 60.506 61.111 0.00 0.00 35.59 4.57
268 269 1.634757 TACGCCGCATTGAAGCTGTG 61.635 55.000 0.00 0.00 35.70 3.66
269 270 1.361668 CTACGCCGCATTGAAGCTGT 61.362 55.000 0.00 0.00 0.00 4.40
270 271 1.349627 CTACGCCGCATTGAAGCTG 59.650 57.895 0.00 0.00 0.00 4.24
271 272 2.464459 GCTACGCCGCATTGAAGCT 61.464 57.895 0.00 0.00 0.00 3.74
272 273 2.023320 GCTACGCCGCATTGAAGC 59.977 61.111 0.00 0.00 0.00 3.86
273 274 2.321060 CGCTACGCCGCATTGAAG 59.679 61.111 0.00 0.00 0.00 3.02
274 275 3.192230 CCGCTACGCCGCATTGAA 61.192 61.111 0.00 0.00 0.00 2.69
285 286 3.600898 AACCAACTCCGGCCGCTAC 62.601 63.158 22.85 0.00 0.00 3.58
286 287 2.791501 GAAACCAACTCCGGCCGCTA 62.792 60.000 22.85 9.21 0.00 4.26
287 288 4.265056 AAACCAACTCCGGCCGCT 62.265 61.111 22.85 0.00 0.00 5.52
288 289 3.733960 GAAACCAACTCCGGCCGC 61.734 66.667 22.85 0.00 0.00 6.53
289 290 2.032071 AGAAACCAACTCCGGCCG 59.968 61.111 21.04 21.04 0.00 6.13
290 291 2.033194 CGAGAAACCAACTCCGGCC 61.033 63.158 0.00 0.00 0.00 6.13
291 292 2.033194 CCGAGAAACCAACTCCGGC 61.033 63.158 0.00 0.00 0.00 6.13
292 293 1.375523 CCCGAGAAACCAACTCCGG 60.376 63.158 0.00 0.00 0.00 5.14
293 294 0.034337 TTCCCGAGAAACCAACTCCG 59.966 55.000 0.00 0.00 0.00 4.63
294 295 1.809684 CTTCCCGAGAAACCAACTCC 58.190 55.000 0.00 0.00 0.00 3.85
295 296 1.157585 GCTTCCCGAGAAACCAACTC 58.842 55.000 0.00 0.00 0.00 3.01
296 297 0.602905 CGCTTCCCGAGAAACCAACT 60.603 55.000 0.00 0.00 40.02 3.16
297 298 1.574702 CCGCTTCCCGAGAAACCAAC 61.575 60.000 0.00 0.00 40.02 3.77
298 299 1.302192 CCGCTTCCCGAGAAACCAA 60.302 57.895 0.00 0.00 40.02 3.67
299 300 2.345991 CCGCTTCCCGAGAAACCA 59.654 61.111 0.00 0.00 40.02 3.67
300 301 3.125573 GCCGCTTCCCGAGAAACC 61.126 66.667 0.00 0.00 40.02 3.27
301 302 3.488090 CGCCGCTTCCCGAGAAAC 61.488 66.667 0.00 0.00 40.02 2.78
302 303 3.927163 GACGCCGCTTCCCGAGAAA 62.927 63.158 0.00 0.00 40.02 2.52
303 304 4.430765 GACGCCGCTTCCCGAGAA 62.431 66.667 0.00 0.00 40.02 2.87
309 310 1.366111 TTAATGCAGACGCCGCTTCC 61.366 55.000 0.00 0.00 37.32 3.46
310 311 0.446222 TTTAATGCAGACGCCGCTTC 59.554 50.000 0.00 0.00 37.32 3.86
311 312 0.447801 CTTTAATGCAGACGCCGCTT 59.552 50.000 0.00 0.00 37.32 4.68
312 313 1.982073 GCTTTAATGCAGACGCCGCT 61.982 55.000 8.38 0.00 37.32 5.52
313 314 1.583709 GCTTTAATGCAGACGCCGC 60.584 57.895 8.38 0.00 37.32 6.53
314 315 1.296867 CGCTTTAATGCAGACGCCG 60.297 57.895 13.17 0.00 37.32 6.46
315 316 1.062525 CCGCTTTAATGCAGACGCC 59.937 57.895 13.17 0.00 37.32 5.68
316 317 1.583709 GCCGCTTTAATGCAGACGC 60.584 57.895 13.17 5.36 39.24 5.19
317 318 1.296867 CGCCGCTTTAATGCAGACG 60.297 57.895 13.17 9.05 0.00 4.18
318 319 1.062525 CCGCCGCTTTAATGCAGAC 59.937 57.895 13.17 1.63 0.00 3.51
319 320 2.760159 GCCGCCGCTTTAATGCAGA 61.760 57.895 13.17 0.00 0.00 4.26
320 321 2.278142 GCCGCCGCTTTAATGCAG 60.278 61.111 13.17 3.42 0.00 4.41
321 322 4.172772 CGCCGCCGCTTTAATGCA 62.173 61.111 13.17 0.00 0.00 3.96
336 337 4.719369 ACGTGACTTCTCGGGCGC 62.719 66.667 0.00 0.00 37.19 6.53
337 338 2.504244 GACGTGACTTCTCGGGCG 60.504 66.667 0.00 0.00 37.19 6.13
338 339 2.126031 GGACGTGACTTCTCGGGC 60.126 66.667 0.00 0.00 37.19 6.13
339 340 2.178521 CGGACGTGACTTCTCGGG 59.821 66.667 0.00 0.00 37.19 5.14
340 341 1.154263 GACGGACGTGACTTCTCGG 60.154 63.158 0.53 0.00 37.19 4.63
341 342 0.452950 CTGACGGACGTGACTTCTCG 60.453 60.000 0.53 0.00 38.62 4.04
342 343 0.592148 ACTGACGGACGTGACTTCTC 59.408 55.000 0.53 0.00 0.00 2.87
343 344 0.311165 CACTGACGGACGTGACTTCT 59.689 55.000 0.53 0.00 33.04 2.85
344 345 1.276145 GCACTGACGGACGTGACTTC 61.276 60.000 0.53 0.00 33.04 3.01
345 346 1.299926 GCACTGACGGACGTGACTT 60.300 57.895 0.53 0.00 33.04 3.01
346 347 2.335369 GCACTGACGGACGTGACT 59.665 61.111 0.53 0.00 33.04 3.41
347 348 2.733593 GGCACTGACGGACGTGAC 60.734 66.667 0.53 0.00 33.04 3.67
348 349 4.337060 CGGCACTGACGGACGTGA 62.337 66.667 0.53 0.00 33.04 4.35
358 359 4.864334 GATGGGAGGGCGGCACTG 62.864 72.222 10.77 0.00 0.00 3.66
363 364 3.866582 GACTGGATGGGAGGGCGG 61.867 72.222 0.00 0.00 0.00 6.13
370 371 1.382522 CCGTGATTTGACTGGATGGG 58.617 55.000 0.00 0.00 0.00 4.00
373 374 0.327924 TGCCCGTGATTTGACTGGAT 59.672 50.000 0.00 0.00 0.00 3.41
441 442 4.764336 CGAACGACCGTGCCGCTA 62.764 66.667 0.00 0.00 0.00 4.26
480 481 1.616725 GGCCCATCACAAATCCTCACA 60.617 52.381 0.00 0.00 0.00 3.58
484 485 0.032813 CCTGGCCCATCACAAATCCT 60.033 55.000 0.00 0.00 0.00 3.24
487 488 1.686800 GCCCTGGCCCATCACAAAT 60.687 57.895 0.00 0.00 34.56 2.32
508 509 1.153647 CTGACATGCCCGCGTTAGA 60.154 57.895 4.92 0.00 0.00 2.10
511 512 2.803155 ATCACTGACATGCCCGCGTT 62.803 55.000 4.92 0.00 0.00 4.84
513 514 2.512286 ATCACTGACATGCCCGCG 60.512 61.111 0.00 0.00 0.00 6.46
515 516 1.884464 CGGATCACTGACATGCCCG 60.884 63.158 0.00 0.00 32.21 6.13
536 537 2.250939 TGAAGTGGCTTTGCGGACG 61.251 57.895 0.00 0.00 0.00 4.79
549 550 3.181500 GCAAACCGAAGACAAAGTGAAGT 60.181 43.478 0.00 0.00 0.00 3.01
577 578 0.331278 TCCTGATCGGGCCATGTTTT 59.669 50.000 16.48 0.00 0.00 2.43
580 581 2.911143 GTCCTGATCGGGCCATGT 59.089 61.111 16.48 0.00 0.00 3.21
581 582 1.744320 TACGTCCTGATCGGGCCATG 61.744 60.000 16.48 7.78 32.08 3.66
582 583 0.832135 ATACGTCCTGATCGGGCCAT 60.832 55.000 16.48 5.67 32.08 4.40
583 584 1.456892 ATACGTCCTGATCGGGCCA 60.457 57.895 16.48 0.00 32.08 5.36
584 585 1.006102 CATACGTCCTGATCGGGCC 60.006 63.158 16.48 3.04 32.08 5.80
585 586 1.664965 GCATACGTCCTGATCGGGC 60.665 63.158 16.48 10.06 0.00 6.13
587 588 1.491670 CTTGCATACGTCCTGATCGG 58.508 55.000 0.00 0.00 0.00 4.18
588 589 0.855349 GCTTGCATACGTCCTGATCG 59.145 55.000 0.00 0.00 0.00 3.69
589 590 0.855349 CGCTTGCATACGTCCTGATC 59.145 55.000 0.00 0.00 0.00 2.92
590 591 0.530650 CCGCTTGCATACGTCCTGAT 60.531 55.000 0.00 0.00 0.00 2.90
591 592 1.153647 CCGCTTGCATACGTCCTGA 60.154 57.895 0.00 0.00 0.00 3.86
592 593 1.019278 AACCGCTTGCATACGTCCTG 61.019 55.000 0.00 0.00 0.00 3.86
594 595 0.096454 GAAACCGCTTGCATACGTCC 59.904 55.000 0.00 0.00 0.00 4.79
612 613 0.395311 ATCTCTAACGCCGACCCTGA 60.395 55.000 0.00 0.00 0.00 3.86
620 621 2.841442 ATAAGGGCATCTCTAACGCC 57.159 50.000 0.00 0.00 45.47 5.68
626 627 3.584848 GGTGGATGTATAAGGGCATCTCT 59.415 47.826 0.00 0.00 40.76 3.10
627 628 3.327757 TGGTGGATGTATAAGGGCATCTC 59.672 47.826 0.00 0.00 40.76 2.75
638 639 9.625747 AAATTTTTCTTTTGTTGGTGGATGTAT 57.374 25.926 0.00 0.00 0.00 2.29
639 640 9.103861 GAAATTTTTCTTTTGTTGGTGGATGTA 57.896 29.630 0.00 0.00 34.41 2.29
640 641 7.609532 TGAAATTTTTCTTTTGTTGGTGGATGT 59.390 29.630 4.80 0.00 38.02 3.06
641 642 7.909641 GTGAAATTTTTCTTTTGTTGGTGGATG 59.090 33.333 4.80 0.00 38.02 3.51
642 643 7.828717 AGTGAAATTTTTCTTTTGTTGGTGGAT 59.171 29.630 4.80 0.00 38.02 3.41
643 644 7.164803 AGTGAAATTTTTCTTTTGTTGGTGGA 58.835 30.769 4.80 0.00 38.02 4.02
644 645 7.376435 AGTGAAATTTTTCTTTTGTTGGTGG 57.624 32.000 4.80 0.00 38.02 4.61
645 646 9.919348 CATAGTGAAATTTTTCTTTTGTTGGTG 57.081 29.630 4.80 0.00 38.02 4.17
646 647 9.883142 TCATAGTGAAATTTTTCTTTTGTTGGT 57.117 25.926 4.80 0.00 38.02 3.67
658 659 9.846248 GCATCAGTTAACTCATAGTGAAATTTT 57.154 29.630 4.77 0.00 0.00 1.82
659 660 9.013229 TGCATCAGTTAACTCATAGTGAAATTT 57.987 29.630 4.77 0.00 0.00 1.82
660 661 8.454106 GTGCATCAGTTAACTCATAGTGAAATT 58.546 33.333 4.77 0.00 0.00 1.82
661 662 7.201556 CGTGCATCAGTTAACTCATAGTGAAAT 60.202 37.037 4.77 0.00 0.00 2.17
662 663 6.090763 CGTGCATCAGTTAACTCATAGTGAAA 59.909 38.462 4.77 0.00 0.00 2.69
663 664 5.576774 CGTGCATCAGTTAACTCATAGTGAA 59.423 40.000 4.77 0.00 0.00 3.18
664 665 5.102313 CGTGCATCAGTTAACTCATAGTGA 58.898 41.667 4.77 0.00 0.00 3.41
665 666 5.102313 TCGTGCATCAGTTAACTCATAGTG 58.898 41.667 4.77 1.97 0.00 2.74
666 667 5.324784 TCGTGCATCAGTTAACTCATAGT 57.675 39.130 4.77 0.00 0.00 2.12
667 668 5.807520 AGTTCGTGCATCAGTTAACTCATAG 59.192 40.000 4.77 0.00 0.00 2.23
668 669 5.720202 AGTTCGTGCATCAGTTAACTCATA 58.280 37.500 4.77 0.00 0.00 2.15
669 670 4.569943 AGTTCGTGCATCAGTTAACTCAT 58.430 39.130 4.77 0.00 0.00 2.90
670 671 3.990092 AGTTCGTGCATCAGTTAACTCA 58.010 40.909 4.77 0.00 0.00 3.41
671 672 5.162075 AGTAGTTCGTGCATCAGTTAACTC 58.838 41.667 4.77 0.00 0.00 3.01
672 673 5.135508 AGTAGTTCGTGCATCAGTTAACT 57.864 39.130 1.12 1.12 0.00 2.24
673 674 4.921515 TGAGTAGTTCGTGCATCAGTTAAC 59.078 41.667 0.00 0.00 0.00 2.01
674 675 5.128992 TGAGTAGTTCGTGCATCAGTTAA 57.871 39.130 0.00 0.00 0.00 2.01
675 676 4.776795 TGAGTAGTTCGTGCATCAGTTA 57.223 40.909 0.00 0.00 0.00 2.24
676 677 3.660501 TGAGTAGTTCGTGCATCAGTT 57.339 42.857 0.00 0.00 0.00 3.16
684 685 2.094906 TCGACCCATTGAGTAGTTCGTG 60.095 50.000 0.00 0.00 0.00 4.35
685 686 2.094854 GTCGACCCATTGAGTAGTTCGT 60.095 50.000 3.51 0.00 0.00 3.85
700 701 2.183555 GATCACACGGGGTCGACC 59.816 66.667 27.04 27.04 40.11 4.79
746 747 1.154207 CGTCGTGCTCTGTCGATGT 60.154 57.895 0.00 0.00 38.00 3.06
862 863 2.764128 GTGGGAGGCGGGATCTGA 60.764 66.667 0.00 0.00 0.00 3.27
863 864 4.227134 CGTGGGAGGCGGGATCTG 62.227 72.222 0.00 0.00 0.00 2.90
933 934 1.761174 CTATTGGGATGGGACGGGG 59.239 63.158 0.00 0.00 0.00 5.73
954 965 3.982372 GATTGCTCGTCGTGCCGGA 62.982 63.158 15.98 3.61 0.00 5.14
963 974 1.497309 TTTGGGGAGGGATTGCTCGT 61.497 55.000 0.00 0.00 0.00 4.18
975 986 2.852075 AGGGCGTCAGTTTGGGGA 60.852 61.111 0.00 0.00 0.00 4.81
1172 1183 2.912542 CGGCCCTAGCATCGGAGA 60.913 66.667 0.00 0.00 42.56 3.71
1320 1331 2.737180 CACTCGAGGCACACCACT 59.263 61.111 18.41 0.00 39.06 4.00
1435 1446 1.218047 CGAAATCCGTGGCAGGAGA 59.782 57.895 9.09 4.86 44.55 3.71
1456 1474 0.890683 CAAGGGTCCTGCAATTCACC 59.109 55.000 0.00 0.00 0.00 4.02
1459 1477 1.737793 CGTACAAGGGTCCTGCAATTC 59.262 52.381 0.00 0.00 0.00 2.17
1476 1494 3.771216 ACTAGGACCAGAAGGAAACGTA 58.229 45.455 0.00 0.00 38.69 3.57
1490 1508 3.629142 ATGCCCACAAAGTACTAGGAC 57.371 47.619 0.00 0.00 0.00 3.85
1493 1511 6.183360 CCAATACAATGCCCACAAAGTACTAG 60.183 42.308 0.00 0.00 0.00 2.57
1494 1512 5.650266 CCAATACAATGCCCACAAAGTACTA 59.350 40.000 0.00 0.00 0.00 1.82
1496 1514 4.381505 CCCAATACAATGCCCACAAAGTAC 60.382 45.833 0.00 0.00 0.00 2.73
1497 1515 3.766591 CCCAATACAATGCCCACAAAGTA 59.233 43.478 0.00 0.00 0.00 2.24
1498 1516 2.566724 CCCAATACAATGCCCACAAAGT 59.433 45.455 0.00 0.00 0.00 2.66
1502 1520 2.175202 GAACCCAATACAATGCCCACA 58.825 47.619 0.00 0.00 0.00 4.17
1503 1521 2.175202 TGAACCCAATACAATGCCCAC 58.825 47.619 0.00 0.00 0.00 4.61
1507 1525 4.400884 TGGTGTATGAACCCAATACAATGC 59.599 41.667 0.00 0.00 39.70 3.56
1508 1526 5.652014 AGTGGTGTATGAACCCAATACAATG 59.348 40.000 0.00 0.00 39.70 2.82
1509 1527 5.652014 CAGTGGTGTATGAACCCAATACAAT 59.348 40.000 0.00 0.00 39.70 2.71
1510 1528 5.007034 CAGTGGTGTATGAACCCAATACAA 58.993 41.667 0.00 0.00 39.70 2.41
1511 1529 4.584874 CAGTGGTGTATGAACCCAATACA 58.415 43.478 0.00 0.00 39.70 2.29
1512 1530 3.377172 GCAGTGGTGTATGAACCCAATAC 59.623 47.826 0.00 0.00 39.70 1.89
1513 1531 3.616219 GCAGTGGTGTATGAACCCAATA 58.384 45.455 0.00 0.00 39.70 1.90
1514 1532 2.446435 GCAGTGGTGTATGAACCCAAT 58.554 47.619 0.00 0.00 39.70 3.16
1515 1533 1.880221 CGCAGTGGTGTATGAACCCAA 60.880 52.381 0.00 0.00 39.70 4.12
1516 1534 0.321210 CGCAGTGGTGTATGAACCCA 60.321 55.000 0.00 0.00 39.70 4.51
1517 1535 1.644786 GCGCAGTGGTGTATGAACCC 61.645 60.000 0.30 0.00 39.70 4.11
1518 1536 1.794222 GCGCAGTGGTGTATGAACC 59.206 57.895 0.30 0.00 40.94 3.62
1522 1540 0.179148 TACTCGCGCAGTGGTGTATG 60.179 55.000 18.70 0.00 39.32 2.39
1524 1542 1.210931 GTACTCGCGCAGTGGTGTA 59.789 57.895 18.70 6.76 39.32 2.90
1533 1551 0.457853 TGGAACTGATGTACTCGCGC 60.458 55.000 0.00 0.00 0.00 6.86
1535 1553 4.492570 CGAAAATGGAACTGATGTACTCGC 60.493 45.833 0.00 0.00 0.00 5.03
1538 1556 4.261801 CCCGAAAATGGAACTGATGTACT 58.738 43.478 0.00 0.00 0.00 2.73
1545 1563 8.085909 AGTAAAATTAACCCGAAAATGGAACTG 58.914 33.333 0.00 0.00 0.00 3.16
1550 1568 8.301002 TCAAGAGTAAAATTAACCCGAAAATGG 58.699 33.333 0.00 0.00 0.00 3.16
1553 1571 7.863877 GCTTCAAGAGTAAAATTAACCCGAAAA 59.136 33.333 0.00 0.00 0.00 2.29
1554 1572 7.364970 GCTTCAAGAGTAAAATTAACCCGAAA 58.635 34.615 0.00 0.00 0.00 3.46
1587 1607 7.118496 ACTCTAAATCTTGGATCGACAGAAT 57.882 36.000 0.00 0.00 0.00 2.40
1591 1611 4.709886 TGGACTCTAAATCTTGGATCGACA 59.290 41.667 0.00 0.00 0.00 4.35
1592 1612 5.263968 TGGACTCTAAATCTTGGATCGAC 57.736 43.478 0.00 0.00 0.00 4.20
1599 1619 5.947228 TTGTGCTTGGACTCTAAATCTTG 57.053 39.130 0.00 0.00 0.00 3.02
1629 1649 3.136626 GGGGCTAATTCAGGTACACATCT 59.863 47.826 0.00 0.00 0.00 2.90
1632 1652 1.208535 CGGGGCTAATTCAGGTACACA 59.791 52.381 0.00 0.00 0.00 3.72
1635 1655 0.534427 GCCGGGGCTAATTCAGGTAC 60.534 60.000 2.18 0.00 38.26 3.34
1637 1657 1.858739 TTGCCGGGGCTAATTCAGGT 61.859 55.000 11.55 0.00 42.51 4.00
1642 1662 1.304879 TTGCTTGCCGGGGCTAATT 60.305 52.632 11.55 0.00 42.51 1.40
1646 1666 4.603535 AACTTGCTTGCCGGGGCT 62.604 61.111 11.55 0.00 42.51 5.19
1675 1695 2.355716 GCACAGAATGGTACTAAGCCCA 60.356 50.000 0.00 0.00 43.62 5.36
1687 1707 1.156645 GCTCTAGCCCGCACAGAATG 61.157 60.000 0.00 0.00 37.29 2.67
1703 1734 2.930040 TGATTTACTAGCGCACTTGCTC 59.070 45.455 11.47 0.00 45.87 4.26
1710 1741 6.183360 ACCAGTACTTATGATTTACTAGCGCA 60.183 38.462 11.47 0.00 0.00 6.09
1714 1745 7.948278 GGCACCAGTACTTATGATTTACTAG 57.052 40.000 7.22 0.00 0.00 2.57
1736 1770 2.802724 AAAGCAAAACCACCGGGGC 61.803 57.895 6.32 0.00 42.05 5.80
1779 1813 3.516700 TGTCCTGATGACTGATGTGACAT 59.483 43.478 0.00 0.00 44.75 3.06
1780 1814 2.899256 TGTCCTGATGACTGATGTGACA 59.101 45.455 0.00 0.00 44.75 3.58
1781 1815 3.599730 TGTCCTGATGACTGATGTGAC 57.400 47.619 0.00 0.00 44.75 3.67
1782 1816 4.831674 AATGTCCTGATGACTGATGTGA 57.168 40.909 0.00 0.00 44.75 3.58
1812 1846 8.514594 TGAAATCAACAGTCAAGTTATCATTCC 58.485 33.333 0.00 0.00 0.00 3.01
1830 1864 8.578448 TCACATGATTCCTACAATGAAATCAA 57.422 30.769 0.00 0.00 0.00 2.57
1837 1871 7.281549 TGACTTGATCACATGATTCCTACAATG 59.718 37.037 0.00 0.00 34.37 2.82
2032 2072 6.323739 AGAAAACAGCCTACAATTCCAAGAAA 59.676 34.615 0.00 0.00 0.00 2.52
2033 2073 5.833131 AGAAAACAGCCTACAATTCCAAGAA 59.167 36.000 0.00 0.00 0.00 2.52
2034 2074 5.385198 AGAAAACAGCCTACAATTCCAAGA 58.615 37.500 0.00 0.00 0.00 3.02
2035 2075 5.712152 AGAAAACAGCCTACAATTCCAAG 57.288 39.130 0.00 0.00 0.00 3.61
2219 2259 6.456988 CCGACTCAAAATTCTTATAGCGCTTT 60.457 38.462 18.68 11.29 0.00 3.51
2243 2283 6.259550 ACAGATAAAGATTGAAGCACAACC 57.740 37.500 0.00 0.00 41.52 3.77
2298 2340 0.606944 TGTGAACCCCAACGCCATAC 60.607 55.000 0.00 0.00 0.00 2.39
2374 2416 8.170553 GCCAAAACGTCTTATAATTAGAAACGA 58.829 33.333 22.38 6.26 0.00 3.85
2384 2426 9.968870 AATTTAAACTGCCAAAACGTCTTATAA 57.031 25.926 0.00 0.00 0.00 0.98
2439 2481 4.061131 TCCAACTTCATACTCCCTCTGA 57.939 45.455 0.00 0.00 0.00 3.27
2452 2494 8.603242 TCAGTAGTGTTTTCTTATCCAACTTC 57.397 34.615 0.00 0.00 0.00 3.01
2593 2692 4.879545 GCCCATTCGGTCAATTAACTTAGA 59.120 41.667 0.00 0.00 0.00 2.10
2594 2693 4.881850 AGCCCATTCGGTCAATTAACTTAG 59.118 41.667 0.00 0.00 0.00 2.18
2717 2816 6.855836 AGCACAACTATCCAACATTACAATG 58.144 36.000 0.37 0.37 42.10 2.82
2870 2969 2.681848 GCCAAACTGGAGATGATGTCTG 59.318 50.000 0.00 0.00 40.96 3.51
2874 2973 3.021695 ACATGCCAAACTGGAGATGATG 58.978 45.455 10.50 0.00 40.96 3.07
2925 3024 5.913514 GGCAAAATCAGATCGAATGATGAAG 59.086 40.000 15.01 9.85 37.46 3.02
3058 3157 7.891183 ACTTAAATTAGTACTGACTGCACAG 57.109 36.000 5.39 2.91 42.78 3.66
3131 3230 1.470098 GGTAACACATCAAGCTGGCTG 59.530 52.381 0.00 0.00 0.00 4.85
3325 3433 4.020396 TCCATGTGGGAACAAATTGGAATG 60.020 41.667 0.00 0.00 44.80 2.67
3413 3521 9.050601 TGTTTAATCCATTTGAATTGTTGGAAC 57.949 29.630 0.00 0.00 41.36 3.62
3504 3612 9.681692 CAGATGAGATGTGTATTTTGTTTTTCA 57.318 29.630 0.00 0.00 0.00 2.69
3664 3796 6.239317 GGATCCTACTACAGCACAACATCATA 60.239 42.308 3.84 0.00 0.00 2.15
3668 3800 3.181475 CGGATCCTACTACAGCACAACAT 60.181 47.826 10.75 0.00 0.00 2.71
3717 3849 6.235231 AGATTTTAAGGAGCTGACGGATTA 57.765 37.500 0.00 0.00 0.00 1.75
3740 3872 0.687757 AGGTGCTCCGCAGATCCTAA 60.688 55.000 0.00 0.00 40.08 2.69
3741 3873 1.075970 AGGTGCTCCGCAGATCCTA 60.076 57.895 0.00 0.00 40.08 2.94
3742 3874 2.364842 AGGTGCTCCGCAGATCCT 60.365 61.111 0.00 0.00 40.08 3.24
3743 3875 2.202987 CAGGTGCTCCGCAGATCC 60.203 66.667 0.00 0.00 40.08 3.36
3744 3876 0.674895 AAACAGGTGCTCCGCAGATC 60.675 55.000 0.00 0.00 40.08 2.75
3745 3877 0.957395 CAAACAGGTGCTCCGCAGAT 60.957 55.000 0.00 0.00 40.08 2.90
3746 3878 1.597854 CAAACAGGTGCTCCGCAGA 60.598 57.895 0.00 0.00 40.08 4.26
3747 3879 2.949106 CAAACAGGTGCTCCGCAG 59.051 61.111 0.00 0.00 40.08 5.18
3748 3880 3.286751 GCAAACAGGTGCTCCGCA 61.287 61.111 0.00 0.00 41.51 5.69
3754 3886 2.558313 GAGCGAGCAAACAGGTGC 59.442 61.111 0.00 0.00 45.28 5.01
3755 3887 1.572085 CTGGAGCGAGCAAACAGGTG 61.572 60.000 0.00 0.00 0.00 4.00
3756 3888 1.302033 CTGGAGCGAGCAAACAGGT 60.302 57.895 0.00 0.00 0.00 4.00
3757 3889 2.037136 CCTGGAGCGAGCAAACAGG 61.037 63.158 14.75 14.75 42.28 4.00
3758 3890 0.603707 TTCCTGGAGCGAGCAAACAG 60.604 55.000 0.00 2.62 0.00 3.16
3759 3891 0.036732 ATTCCTGGAGCGAGCAAACA 59.963 50.000 0.00 0.00 0.00 2.83
3760 3892 1.168714 AATTCCTGGAGCGAGCAAAC 58.831 50.000 0.00 0.00 0.00 2.93
3761 3893 1.909700 AAATTCCTGGAGCGAGCAAA 58.090 45.000 0.00 0.00 0.00 3.68
3762 3894 1.909700 AAAATTCCTGGAGCGAGCAA 58.090 45.000 0.00 0.00 0.00 3.91
3763 3895 2.747446 GTTAAAATTCCTGGAGCGAGCA 59.253 45.455 0.00 0.00 0.00 4.26
3764 3896 3.010420 AGTTAAAATTCCTGGAGCGAGC 58.990 45.455 0.00 0.00 0.00 5.03
3777 3909 2.084546 GGACGGAGCTGCAGTTAAAAT 58.915 47.619 16.64 0.00 0.00 1.82
3832 3964 1.205417 TCTAACTTTAGGGCCCGTTCG 59.795 52.381 18.44 10.67 0.00 3.95
3927 4059 4.202441 AGGACCAATATGACATGCTGAAC 58.798 43.478 0.00 0.00 0.00 3.18
3952 4084 8.114102 TCTCCTAGTACCAAGACTTCAATAGAA 58.886 37.037 0.00 0.00 0.00 2.10
3962 4094 5.532032 GTGACCTATCTCCTAGTACCAAGAC 59.468 48.000 0.00 0.00 0.00 3.01
3985 4117 9.423061 GTTCAGTGCTTATGAAAATTAATTGGT 57.577 29.630 0.39 0.00 38.34 3.67
4229 4361 3.806949 ACCTGAGGGCATTTAGTGAAA 57.193 42.857 2.38 0.00 35.63 2.69
4233 4365 2.644798 ACTGAACCTGAGGGCATTTAGT 59.355 45.455 2.38 0.00 35.63 2.24
4264 4396 8.287439 CCAACAAGGTATCATGGTATGTTAAA 57.713 34.615 3.69 0.00 0.00 1.52
4453 4589 3.521560 TGAAGGAACTCACATATCACGC 58.478 45.455 0.00 0.00 38.49 5.34
4547 4683 9.959721 AGACATATACCTACAACAAAATTCACT 57.040 29.630 0.00 0.00 0.00 3.41
4645 4781 7.495135 AGGTTGTTGCCAATTTTTCTTTATG 57.505 32.000 0.00 0.00 32.11 1.90
4798 4935 9.846248 AAATTTCATAACTGAAGTGAGCATTAC 57.154 29.630 0.00 0.00 42.19 1.89
4813 4950 4.434713 ACCTGCACGGAAATTTCATAAC 57.565 40.909 19.49 6.98 36.31 1.89
4818 4955 3.561503 GTTGTACCTGCACGGAAATTTC 58.438 45.455 9.83 9.83 36.31 2.17
4895 5032 2.025981 TGTGCTTACTGCTCCAATGGAT 60.026 45.455 0.87 0.00 43.37 3.41
5125 5263 3.885901 AGGAAAGCTTTGGAAAGAGACAC 59.114 43.478 18.30 0.00 38.28 3.67
5265 5424 4.332819 GGTGATGCACTAAACGAATAGCTT 59.667 41.667 0.00 0.00 34.40 3.74
5266 5425 3.871594 GGTGATGCACTAAACGAATAGCT 59.128 43.478 0.00 0.00 34.40 3.32
5273 5432 0.719465 GACCGGTGATGCACTAAACG 59.281 55.000 14.63 0.00 34.40 3.60
5274 5433 1.803334 TGACCGGTGATGCACTAAAC 58.197 50.000 14.63 0.00 34.40 2.01
5304 5464 7.609056 TGGAGACAACCAAAACTAGATACTAC 58.391 38.462 0.00 0.00 36.96 2.73
5366 5607 3.108289 CACAGAGTGCGTCAGCCG 61.108 66.667 0.00 0.00 44.33 5.52
5383 5628 7.011389 GGCCAGAAATAACAAAATAATTCAGCC 59.989 37.037 0.00 0.00 33.26 4.85
5387 5632 9.435688 AACTGGCCAGAAATAACAAAATAATTC 57.564 29.630 39.19 0.00 0.00 2.17
5402 5647 0.467290 GGTCACCAAACTGGCCAGAA 60.467 55.000 39.19 11.69 42.67 3.02
5468 5728 1.478631 AGATCATGACGAGTCCTGCA 58.521 50.000 0.00 0.00 0.00 4.41
5473 5746 4.987832 ACTGTACAAGATCATGACGAGTC 58.012 43.478 4.68 0.00 0.00 3.36
5533 5817 5.207354 TCTTTAGCTCAGGAGATCATCACT 58.793 41.667 0.00 0.00 0.00 3.41
5555 5839 2.810274 TGCAAGACAGTTTCATGAGCTC 59.190 45.455 6.82 6.82 0.00 4.09
5559 5843 5.065235 TGAAGATGCAAGACAGTTTCATGA 58.935 37.500 0.00 0.00 32.61 3.07
5560 5844 5.048921 ACTGAAGATGCAAGACAGTTTCATG 60.049 40.000 11.46 0.00 38.41 3.07
5598 5900 5.691896 TCTATACGGTTCTCTGATCTCCAA 58.308 41.667 0.00 0.00 0.00 3.53
5600 5902 5.410439 GTCTCTATACGGTTCTCTGATCTCC 59.590 48.000 0.00 0.00 0.00 3.71
5601 5903 5.992829 TGTCTCTATACGGTTCTCTGATCTC 59.007 44.000 0.00 0.00 0.00 2.75
5620 5922 7.118971 GGCTGATTGTATGAGGATTTATGTCTC 59.881 40.741 0.00 0.00 0.00 3.36
5622 5924 6.712095 TGGCTGATTGTATGAGGATTTATGTC 59.288 38.462 0.00 0.00 0.00 3.06
5623 5925 6.604171 TGGCTGATTGTATGAGGATTTATGT 58.396 36.000 0.00 0.00 0.00 2.29
5625 5927 6.713903 CACTGGCTGATTGTATGAGGATTTAT 59.286 38.462 0.00 0.00 0.00 1.40
5626 5928 6.057533 CACTGGCTGATTGTATGAGGATTTA 58.942 40.000 0.00 0.00 0.00 1.40
5628 5930 4.080129 ACACTGGCTGATTGTATGAGGATT 60.080 41.667 0.00 0.00 0.00 3.01
5630 5932 2.840038 ACACTGGCTGATTGTATGAGGA 59.160 45.455 0.00 0.00 0.00 3.71
5631 5933 3.272574 ACACTGGCTGATTGTATGAGG 57.727 47.619 0.00 0.00 0.00 3.86
5635 5937 5.357742 TGACATACACTGGCTGATTGTAT 57.642 39.130 0.00 0.35 36.99 2.29
5636 5938 4.817318 TGACATACACTGGCTGATTGTA 57.183 40.909 0.00 0.00 32.21 2.41
5637 5939 3.701205 TGACATACACTGGCTGATTGT 57.299 42.857 0.00 0.00 32.21 2.71
5638 5940 3.943381 ACATGACATACACTGGCTGATTG 59.057 43.478 0.00 0.00 32.21 2.67
5644 5946 1.452110 TGCACATGACATACACTGGC 58.548 50.000 0.00 0.00 0.00 4.85
5670 5975 3.774734 TGACTAGCCTTAGGTTCAGACA 58.225 45.455 0.00 0.00 0.00 3.41
5671 5976 4.021368 TGTTGACTAGCCTTAGGTTCAGAC 60.021 45.833 0.00 0.00 0.00 3.51
5672 5977 4.157246 TGTTGACTAGCCTTAGGTTCAGA 58.843 43.478 0.00 0.00 0.00 3.27
5843 6148 4.459089 GCAGCCTCCTCCACGACC 62.459 72.222 0.00 0.00 0.00 4.79
5889 6194 1.226603 CTACTACCGCCACGTGCTC 60.227 63.158 10.91 2.79 38.05 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.