Multiple sequence alignment - TraesCS1D01G318500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G318500 chr1D 100.000 3743 0 0 1 3743 412853530 412857272 0.000000e+00 6913.0
1 TraesCS1D01G318500 chr1D 98.682 1138 15 0 562 1699 412785982 412787119 0.000000e+00 2019.0
2 TraesCS1D01G318500 chr1D 95.506 1157 26 1 569 1699 412659606 412660762 0.000000e+00 1825.0
3 TraesCS1D01G318500 chr1D 93.607 1095 52 10 1697 2783 412814877 412815961 0.000000e+00 1618.0
4 TraesCS1D01G318500 chr1D 92.559 1102 69 9 1697 2789 412642668 412643765 0.000000e+00 1568.0
5 TraesCS1D01G318500 chr1D 92.559 1102 69 9 1697 2789 412746646 412747743 0.000000e+00 1568.0
6 TraesCS1D01G318500 chr1D 92.559 1102 69 9 1697 2789 412763809 412764906 0.000000e+00 1568.0
7 TraesCS1D01G318500 chr1D 93.508 955 56 6 2792 3741 424970636 424969683 0.000000e+00 1415.0
8 TraesCS1D01G318500 chr1D 93.284 953 58 6 2793 3741 424958007 424957057 0.000000e+00 1400.0
9 TraesCS1D01G318500 chr1D 92.662 954 64 6 2793 3741 155222276 155221324 0.000000e+00 1369.0
10 TraesCS1D01G318500 chr1D 92.034 954 70 6 2793 3741 155235010 155234058 0.000000e+00 1336.0
11 TraesCS1D01G318500 chr1D 97.802 546 11 1 3 548 412785088 412785632 0.000000e+00 941.0
12 TraesCS1D01G318500 chr1D 96.318 516 18 1 3 518 412658748 412659262 0.000000e+00 846.0
13 TraesCS1D01G318500 chr1D 96.349 493 17 1 1208 1699 412642014 412642506 0.000000e+00 809.0
14 TraesCS1D01G318500 chr1D 96.349 493 17 1 1208 1699 412745992 412746484 0.000000e+00 809.0
15 TraesCS1D01G318500 chr1D 96.349 493 17 1 1208 1699 412763155 412763647 0.000000e+00 809.0
16 TraesCS1D01G318500 chr1D 88.931 262 24 1 942 1198 412641710 412641971 6.030000e-83 318.0
17 TraesCS1D01G318500 chr1D 88.931 262 24 1 942 1198 412745688 412745949 6.030000e-83 318.0
18 TraesCS1D01G318500 chr1D 88.931 262 24 1 942 1198 412762851 412763112 6.030000e-83 318.0
19 TraesCS1D01G318500 chr1B 92.055 1095 69 6 1697 2783 556251869 556252953 0.000000e+00 1524.0
20 TraesCS1D01G318500 chr1B 91.788 1096 69 9 1697 2783 556834543 556835626 0.000000e+00 1506.0
21 TraesCS1D01G318500 chr1B 91.788 1096 69 9 1697 2783 556862964 556864047 0.000000e+00 1506.0
22 TraesCS1D01G318500 chr1B 91.689 1095 74 8 1697 2783 556663584 556664669 0.000000e+00 1502.0
23 TraesCS1D01G318500 chr1B 89.725 545 47 6 1 537 556262694 556263237 0.000000e+00 688.0
24 TraesCS1D01G318500 chr1B 89.041 438 45 2 112 546 556661323 556661760 1.180000e-149 540.0
25 TraesCS1D01G318500 chr1B 94.083 338 18 2 568 905 556263489 556263824 2.580000e-141 512.0
26 TraesCS1D01G318500 chr1B 92.877 351 24 1 562 911 556662061 556662411 3.340000e-140 508.0
27 TraesCS1D01G318500 chr1B 93.281 253 16 1 900 1152 556263853 556264104 4.570000e-99 372.0
28 TraesCS1D01G318500 chr1B 90.351 114 6 3 3 116 556659560 556659668 1.080000e-30 145.0
29 TraesCS1D01G318500 chr1B 87.500 56 6 1 850 904 593912464 593912409 3.120000e-06 63.9
30 TraesCS1D01G318500 chr1A 91.033 1104 86 10 1697 2789 509914349 509913248 0.000000e+00 1478.0
31 TraesCS1D01G318500 chr1A 90.059 1187 51 33 568 1694 509850328 509849149 0.000000e+00 1476.0
32 TraesCS1D01G318500 chr1A 92.692 821 29 13 900 1694 509793820 509793005 0.000000e+00 1155.0
33 TraesCS1D01G318500 chr1A 92.448 821 31 13 900 1694 509720440 509719625 0.000000e+00 1144.0
34 TraesCS1D01G318500 chr1A 93.686 491 27 2 1208 1694 509914999 509914509 0.000000e+00 732.0
35 TraesCS1D01G318500 chr1A 93.084 347 19 4 573 918 509720797 509720455 1.550000e-138 503.0
36 TraesCS1D01G318500 chr1A 92.507 347 20 5 573 918 509794176 509793835 3.360000e-135 492.0
37 TraesCS1D01G318500 chr1A 96.818 220 7 0 1 220 509794903 509794684 5.910000e-98 368.0
38 TraesCS1D01G318500 chr1A 91.791 268 15 2 303 564 509794694 509794428 2.120000e-97 366.0
39 TraesCS1D01G318500 chr1A 96.364 220 8 0 1 220 509721432 509721213 2.750000e-96 363.0
40 TraesCS1D01G318500 chr1A 91.418 268 16 2 303 564 509721223 509720957 9.880000e-96 361.0
41 TraesCS1D01G318500 chr1A 90.672 268 18 2 303 564 509850684 509850418 2.140000e-92 350.0
42 TraesCS1D01G318500 chr1A 93.578 218 14 0 3 220 509850891 509850674 3.610000e-85 326.0
43 TraesCS1D01G318500 chr5D 92.887 956 60 7 2792 3741 90127683 90128636 0.000000e+00 1382.0
44 TraesCS1D01G318500 chr5D 91.971 959 68 8 2790 3741 373676093 373675137 0.000000e+00 1336.0
45 TraesCS1D01G318500 chr5D 91.937 955 69 7 2792 3740 104893682 104892730 0.000000e+00 1330.0
46 TraesCS1D01G318500 chr7D 92.348 954 65 7 2793 3741 29290434 29289484 0.000000e+00 1351.0
47 TraesCS1D01G318500 chr6D 92.034 954 70 6 2793 3741 130499322 130500274 0.000000e+00 1336.0
48 TraesCS1D01G318500 chr3D 81.818 352 50 8 1 352 563141207 563141544 2.200000e-72 283.0
49 TraesCS1D01G318500 chr3D 83.025 324 41 7 34 357 562931889 562932198 7.920000e-72 281.0
50 TraesCS1D01G318500 chr3D 81.534 352 51 8 1 352 563117118 563117455 1.020000e-70 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G318500 chr1D 412853530 412857272 3742 False 6913.000000 6913 100.000000 1 3743 1 chr1D.!!$F2 3742
1 TraesCS1D01G318500 chr1D 412814877 412815961 1084 False 1618.000000 1618 93.607000 1697 2783 1 chr1D.!!$F1 1086
2 TraesCS1D01G318500 chr1D 412785088 412787119 2031 False 1480.000000 2019 98.242000 3 1699 2 chr1D.!!$F7 1696
3 TraesCS1D01G318500 chr1D 424969683 424970636 953 True 1415.000000 1415 93.508000 2792 3741 1 chr1D.!!$R4 949
4 TraesCS1D01G318500 chr1D 424957057 424958007 950 True 1400.000000 1400 93.284000 2793 3741 1 chr1D.!!$R3 948
5 TraesCS1D01G318500 chr1D 155221324 155222276 952 True 1369.000000 1369 92.662000 2793 3741 1 chr1D.!!$R1 948
6 TraesCS1D01G318500 chr1D 155234058 155235010 952 True 1336.000000 1336 92.034000 2793 3741 1 chr1D.!!$R2 948
7 TraesCS1D01G318500 chr1D 412658748 412660762 2014 False 1335.500000 1825 95.912000 3 1699 2 chr1D.!!$F4 1696
8 TraesCS1D01G318500 chr1D 412641710 412643765 2055 False 898.333333 1568 92.613000 942 2789 3 chr1D.!!$F3 1847
9 TraesCS1D01G318500 chr1D 412745688 412747743 2055 False 898.333333 1568 92.613000 942 2789 3 chr1D.!!$F5 1847
10 TraesCS1D01G318500 chr1D 412762851 412764906 2055 False 898.333333 1568 92.613000 942 2789 3 chr1D.!!$F6 1847
11 TraesCS1D01G318500 chr1B 556251869 556252953 1084 False 1524.000000 1524 92.055000 1697 2783 1 chr1B.!!$F1 1086
12 TraesCS1D01G318500 chr1B 556834543 556835626 1083 False 1506.000000 1506 91.788000 1697 2783 1 chr1B.!!$F2 1086
13 TraesCS1D01G318500 chr1B 556862964 556864047 1083 False 1506.000000 1506 91.788000 1697 2783 1 chr1B.!!$F3 1086
14 TraesCS1D01G318500 chr1B 556659560 556664669 5109 False 673.750000 1502 90.989500 3 2783 4 chr1B.!!$F5 2780
15 TraesCS1D01G318500 chr1B 556262694 556264104 1410 False 524.000000 688 92.363000 1 1152 3 chr1B.!!$F4 1151
16 TraesCS1D01G318500 chr1A 509913248 509914999 1751 True 1105.000000 1478 92.359500 1208 2789 2 chr1A.!!$R4 1581
17 TraesCS1D01G318500 chr1A 509849149 509850891 1742 True 717.333333 1476 91.436333 3 1694 3 chr1A.!!$R3 1691
18 TraesCS1D01G318500 chr1A 509793005 509794903 1898 True 595.250000 1155 93.452000 1 1694 4 chr1A.!!$R2 1693
19 TraesCS1D01G318500 chr1A 509719625 509721432 1807 True 592.750000 1144 93.328500 1 1694 4 chr1A.!!$R1 1693
20 TraesCS1D01G318500 chr5D 90127683 90128636 953 False 1382.000000 1382 92.887000 2792 3741 1 chr5D.!!$F1 949
21 TraesCS1D01G318500 chr5D 373675137 373676093 956 True 1336.000000 1336 91.971000 2790 3741 1 chr5D.!!$R2 951
22 TraesCS1D01G318500 chr5D 104892730 104893682 952 True 1330.000000 1330 91.937000 2792 3740 1 chr5D.!!$R1 948
23 TraesCS1D01G318500 chr7D 29289484 29290434 950 True 1351.000000 1351 92.348000 2793 3741 1 chr7D.!!$R1 948
24 TraesCS1D01G318500 chr6D 130499322 130500274 952 False 1336.000000 1336 92.034000 2793 3741 1 chr6D.!!$F1 948

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 1953 3.470645 ACCCGTCACTGCTATATTTCC 57.529 47.619 0.0 0.0 0.0 3.13 F
1933 4411 0.599558 CGACCTCCAACTTCACCGTA 59.400 55.000 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2153 4631 0.689745 CTACCGGGGTCCATCTCCAA 60.690 60.0 6.32 0.0 36.19 3.53 R
2824 5324 0.114560 TCGAAGAGTCAGGGGGAGTT 59.885 55.0 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 1835 5.874810 TGTTACTGCTCATCACAATTAGGTC 59.125 40.000 0.00 0.00 0.00 3.85
292 1953 3.470645 ACCCGTCACTGCTATATTTCC 57.529 47.619 0.00 0.00 0.00 3.13
307 1968 6.239008 GCTATATTTCCAAATTAGCTGTGGCA 60.239 38.462 0.00 0.00 41.70 4.92
1507 3811 2.553268 GCAGCTGCACGACAAGTC 59.447 61.111 33.36 0.00 41.59 3.01
1673 3982 1.829533 GTATCTGCCCGTACCCCGA 60.830 63.158 0.00 0.00 39.56 5.14
1717 4194 3.125376 ATCCTCGCCCTCATTGCCC 62.125 63.158 0.00 0.00 0.00 5.36
1752 4229 2.619646 GCTGGTGAGTAGAGTACTAGGC 59.380 54.545 0.00 0.00 39.59 3.93
1754 4231 2.220313 GGTGAGTAGAGTACTAGGCCG 58.780 57.143 0.00 0.00 39.59 6.13
1933 4411 0.599558 CGACCTCCAACTTCACCGTA 59.400 55.000 0.00 0.00 0.00 4.02
2086 4564 2.994995 AGCGACATCGACCCCACA 60.995 61.111 5.26 0.00 43.02 4.17
2153 4631 0.179056 CAACGACAACACCACCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
2170 4648 1.995626 CTTGGAGATGGACCCCGGT 60.996 63.158 0.00 0.00 0.00 5.28
2458 4937 5.069516 AGGCTGTTTTGATTTGTGAACATCT 59.930 36.000 0.00 0.00 32.23 2.90
2462 4941 7.847564 GCTGTTTTGATTTGTGAACATCTTTTC 59.152 33.333 0.00 0.00 32.23 2.29
2463 4942 8.195617 TGTTTTGATTTGTGAACATCTTTTCC 57.804 30.769 0.00 0.00 0.00 3.13
2488 4968 7.282450 CCCCCTGTAAATTACTGTAAGATTGTC 59.718 40.741 6.40 3.79 37.43 3.18
2521 5001 8.206867 CCTTTCTCTCCCAAATCTTTTTCTTTT 58.793 33.333 0.00 0.00 0.00 2.27
2522 5002 8.947055 TTTCTCTCCCAAATCTTTTTCTTTTG 57.053 30.769 0.00 0.00 0.00 2.44
2570 5050 6.093495 CCATGTTAATTCCTTGTACACACGAT 59.907 38.462 0.00 0.00 0.00 3.73
2576 5056 4.061357 TCCTTGTACACACGATGAACAA 57.939 40.909 0.00 0.00 0.00 2.83
2579 5059 5.178623 TCCTTGTACACACGATGAACAATTC 59.821 40.000 0.00 0.00 0.00 2.17
2580 5060 5.049749 CCTTGTACACACGATGAACAATTCA 60.050 40.000 0.00 0.00 45.01 2.57
2592 5072 6.020440 CGATGAACAATTCAATATTGCCACAC 60.020 38.462 10.76 0.44 43.95 3.82
2595 5075 3.837146 ACAATTCAATATTGCCACACCCA 59.163 39.130 10.76 0.00 32.55 4.51
2601 5081 0.894141 TATTGCCACACCCAACATGC 59.106 50.000 0.00 0.00 0.00 4.06
2603 5083 2.916703 GCCACACCCAACATGCCA 60.917 61.111 0.00 0.00 0.00 4.92
2614 5094 0.881118 AACATGCCATCCGTTGTCAC 59.119 50.000 0.00 0.00 0.00 3.67
2631 5118 2.234661 GTCACCTGGAGATCATGTCACA 59.765 50.000 0.00 0.00 0.00 3.58
2656 5143 9.477484 CACTTACTAGTTCTGTCTATGTTTGTT 57.523 33.333 0.00 0.00 30.26 2.83
2790 5290 6.679843 TGTTATTTAGTTACTTTTTGGGCCG 58.320 36.000 0.00 0.00 0.00 6.13
2824 5324 1.259840 GGTCACGGGTAGCCTAACCA 61.260 60.000 6.63 0.00 41.67 3.67
2845 5345 0.533032 CTCCCCCTGACTCTTCGAAC 59.467 60.000 0.00 0.00 0.00 3.95
2924 5424 3.391382 CTGTCCCCAGGGTCGACC 61.391 72.222 27.04 27.04 40.67 4.79
2944 5444 2.429930 CAGAAGGCGACCCAACCA 59.570 61.111 0.00 0.00 0.00 3.67
2958 5458 1.076350 CCAACCACATAAACCTCCCCA 59.924 52.381 0.00 0.00 0.00 4.96
2960 5460 2.825532 CAACCACATAAACCTCCCCAAG 59.174 50.000 0.00 0.00 0.00 3.61
3031 5531 2.515523 CCAGAAGCCGGCCATGAG 60.516 66.667 26.15 9.82 0.00 2.90
3072 5572 2.830370 CCATGGAGAAAGCCGGCC 60.830 66.667 26.15 8.19 0.00 6.13
3113 5613 4.017808 CTGCACCTACTAAGACTGTACCT 58.982 47.826 0.00 0.00 0.00 3.08
3131 5631 1.069636 CCTACGTAACGGCGATAGGAC 60.070 57.143 20.95 7.43 37.59 3.85
3170 5670 1.384082 CCCACTACCCCCGAATCCT 60.384 63.158 0.00 0.00 0.00 3.24
3285 5785 2.268920 CCAGTACGGCATGCAGGT 59.731 61.111 21.96 18.97 0.00 4.00
3374 5876 2.839098 CTCCCAATAGCCGGCCAT 59.161 61.111 26.15 13.68 0.00 4.40
3532 6034 3.737172 CGCCGACAAAGCCCCAAG 61.737 66.667 0.00 0.00 0.00 3.61
3533 6035 4.056125 GCCGACAAAGCCCCAAGC 62.056 66.667 0.00 0.00 44.25 4.01
3724 6230 2.490165 CCATGCAAAGGGAGAGCTG 58.510 57.895 0.00 0.00 0.00 4.24
3741 6247 4.223700 AGAGCTGATAGAATTCCACACACA 59.776 41.667 0.65 0.00 0.00 3.72
3742 6248 4.910195 AGCTGATAGAATTCCACACACAA 58.090 39.130 0.65 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 1791 1.680338 AAGTCCCGCCATTGCTTATC 58.320 50.000 0.00 0.00 34.43 1.75
147 1807 6.639632 AATTGTGATGAGCAGTAACAAAGT 57.360 33.333 0.00 0.00 34.67 2.66
292 1953 2.095059 GTCACCTGCCACAGCTAATTTG 60.095 50.000 0.00 0.00 40.80 2.32
307 1968 3.681835 GGGCGAGACGTGTCACCT 61.682 66.667 18.10 0.00 0.00 4.00
370 2032 3.947910 TCGACCGTCACCTAAGAAAAT 57.052 42.857 0.00 0.00 0.00 1.82
381 2043 1.816224 TCATCTTGTCATCGACCGTCA 59.184 47.619 0.00 0.00 0.00 4.35
558 2233 1.201647 CAAGCTTGGCACCTGATTCAG 59.798 52.381 19.14 6.70 0.00 3.02
563 2574 1.630369 AGTATCAAGCTTGGCACCTGA 59.370 47.619 25.73 5.49 0.00 3.86
1198 3463 1.388547 TGTTCCTTGTTTGCGCTCTT 58.611 45.000 9.73 0.00 0.00 2.85
1507 3811 2.202623 GGCACGACTCGCTGTAGG 60.203 66.667 0.00 0.00 0.00 3.18
1673 3982 1.601759 GTCAGGCCACAGCACACAT 60.602 57.895 5.01 0.00 42.56 3.21
1717 4194 2.586079 CAGCCATACTGCGTCCCG 60.586 66.667 0.00 0.00 40.19 5.14
1752 4229 3.730715 GTGTCATTTGCAAAAGAGAACGG 59.269 43.478 17.19 0.00 0.00 4.44
1754 4231 3.730715 CCGTGTCATTTGCAAAAGAGAAC 59.269 43.478 17.19 15.98 0.00 3.01
1933 4411 2.659610 GCGAAGAGCTGGGTGAGT 59.340 61.111 0.00 0.00 44.04 3.41
2086 4564 1.219124 CATGTACTGCGGCTCCAGT 59.781 57.895 12.97 12.97 46.98 4.00
2153 4631 0.689745 CTACCGGGGTCCATCTCCAA 60.690 60.000 6.32 0.00 36.19 3.53
2170 4648 2.029290 GGTGTCGAAGGTCTTGAAGCTA 60.029 50.000 0.00 0.00 33.60 3.32
2219 4697 3.787001 GGAGTGGAAGAGGCCCCG 61.787 72.222 0.00 0.00 0.00 5.73
2296 4774 3.318886 GAAGAACTCGTCCTTGAAGGTC 58.681 50.000 11.60 4.62 36.53 3.85
2297 4775 2.288273 CGAAGAACTCGTCCTTGAAGGT 60.288 50.000 11.60 0.00 42.89 3.50
2320 4798 4.162690 ATGGAGGCGGCGAAGTCC 62.163 66.667 12.98 13.47 0.00 3.85
2458 4937 7.757611 TCTTACAGTAATTTACAGGGGGAAAA 58.242 34.615 9.15 0.00 0.00 2.29
2462 4941 7.116736 ACAATCTTACAGTAATTTACAGGGGG 58.883 38.462 9.15 0.00 0.00 5.40
2463 4942 7.827236 TGACAATCTTACAGTAATTTACAGGGG 59.173 37.037 9.15 0.00 0.00 4.79
2488 4968 4.494091 TTTGGGAGAGAAAGGAGCTATG 57.506 45.455 0.00 0.00 0.00 2.23
2521 5001 8.554528 TGGTCGTAACGAAACAATAAATTAACA 58.445 29.630 0.00 0.00 37.72 2.41
2522 5002 8.931905 TGGTCGTAACGAAACAATAAATTAAC 57.068 30.769 0.00 0.00 37.72 2.01
2543 5023 6.608610 GTGTGTACAAGGAATTAACATGGTC 58.391 40.000 0.00 0.00 0.00 4.02
2570 5050 5.477510 GGTGTGGCAATATTGAATTGTTCA 58.522 37.500 19.73 5.04 38.04 3.18
2576 5056 3.837146 TGTTGGGTGTGGCAATATTGAAT 59.163 39.130 19.73 0.00 0.00 2.57
2579 5059 3.523547 CATGTTGGGTGTGGCAATATTG 58.476 45.455 11.27 11.27 0.00 1.90
2580 5060 2.093553 GCATGTTGGGTGTGGCAATATT 60.094 45.455 0.00 0.00 0.00 1.28
2592 5072 1.250154 ACAACGGATGGCATGTTGGG 61.250 55.000 25.41 9.76 45.48 4.12
2595 5075 3.337834 TGACAACGGATGGCATGTT 57.662 47.368 3.81 0.15 44.10 2.71
2601 5081 0.391661 CTCCAGGTGACAACGGATGG 60.392 60.000 4.82 0.00 0.00 3.51
2603 5083 1.482593 GATCTCCAGGTGACAACGGAT 59.517 52.381 4.82 0.00 0.00 4.18
2614 5094 3.623906 AAGTGTGACATGATCTCCAGG 57.376 47.619 0.00 0.00 0.00 4.45
2688 5183 6.352516 ACTCTGAGATGAAACAAAGAACACT 58.647 36.000 12.44 0.00 0.00 3.55
2734 5234 9.738832 CTGACTATAACTCTTCCTTTTACTAGC 57.261 37.037 0.00 0.00 0.00 3.42
2767 5267 6.680810 ACGGCCCAAAAAGTAACTAAATAAC 58.319 36.000 0.00 0.00 0.00 1.89
2789 5289 2.410730 GTGACCATTTACTCCGACAACG 59.589 50.000 0.00 0.00 39.43 4.10
2790 5290 2.410730 CGTGACCATTTACTCCGACAAC 59.589 50.000 0.00 0.00 0.00 3.32
2807 5307 0.609662 GTTGGTTAGGCTACCCGTGA 59.390 55.000 3.48 0.00 37.39 4.35
2824 5324 0.114560 TCGAAGAGTCAGGGGGAGTT 59.885 55.000 0.00 0.00 0.00 3.01
2845 5345 5.603170 AGGTTTGAATGGCCTGATAATTG 57.397 39.130 3.32 0.00 0.00 2.32
2919 5419 4.689549 TCGCCTTCTGGGGGTCGA 62.690 66.667 0.00 0.00 46.67 4.20
2924 5424 3.646715 TTGGGTCGCCTTCTGGGG 61.647 66.667 0.00 0.00 46.42 4.96
2958 5458 3.754323 CGGCTATCTCGTATCTTCCTCTT 59.246 47.826 0.00 0.00 0.00 2.85
2960 5460 3.125658 GTCGGCTATCTCGTATCTTCCTC 59.874 52.174 0.00 0.00 0.00 3.71
2999 5499 0.323542 TCTGGGAGTCGGTCCTCTTC 60.324 60.000 4.92 0.00 46.06 2.87
3031 5531 3.254024 TTCTGGGAGTCGGCTTGCC 62.254 63.158 0.75 0.75 0.00 4.52
3033 5533 1.743252 GCTTCTGGGAGTCGGCTTG 60.743 63.158 0.00 0.00 0.00 4.01
3060 5560 4.803908 CTGGGGGCCGGCTTTCTC 62.804 72.222 28.56 16.65 0.00 2.87
3072 5572 4.109675 CTTGGCCGGTACCTGGGG 62.110 72.222 19.94 11.47 0.00 4.96
3079 5579 2.345991 GTGCAGTCTTGGCCGGTA 59.654 61.111 1.90 0.00 0.00 4.02
3080 5580 4.643387 GGTGCAGTCTTGGCCGGT 62.643 66.667 1.90 0.00 0.00 5.28
3113 5613 0.581529 CGTCCTATCGCCGTTACGTA 59.418 55.000 3.52 0.00 0.00 3.57
3150 5650 3.094498 ATTCGGGGGTAGTGGGCC 61.094 66.667 0.00 0.00 0.00 5.80
3301 5802 1.137825 CCTTCGGACGTCTCTCTGC 59.862 63.158 16.46 0.00 0.00 4.26
3327 5828 2.427245 CCTGGCCGACTAGAGGTGG 61.427 68.421 0.00 0.84 0.00 4.61
3329 5830 2.042843 CCCTGGCCGACTAGAGGT 60.043 66.667 0.00 0.00 0.00 3.85
3372 5874 1.195115 TGTTTCGAGGGAGGGAGATG 58.805 55.000 0.00 0.00 0.00 2.90
3374 5876 1.195115 CATGTTTCGAGGGAGGGAGA 58.805 55.000 0.00 0.00 0.00 3.71
3718 6223 4.223700 TGTGTGTGGAATTCTATCAGCTCT 59.776 41.667 5.23 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.