Multiple sequence alignment - TraesCS1D01G315700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G315700 chr1D 100.000 4064 0 0 1 4064 410789470 410793533 0.000000e+00 7505.0
1 TraesCS1D01G315700 chr1D 97.484 159 4 0 1 159 410753933 410754091 5.180000e-69 272.0
2 TraesCS1D01G315700 chr1A 93.919 2072 89 12 1995 4064 507077472 507079508 0.000000e+00 3094.0
3 TraesCS1D01G315700 chr1A 86.522 1150 67 24 706 1815 507076139 507077240 0.000000e+00 1184.0
4 TraesCS1D01G315700 chr1A 84.952 525 71 8 171 691 10236141 10235621 3.600000e-145 525.0
5 TraesCS1D01G315700 chr1B 92.787 1220 55 13 1997 3211 553630352 553631543 0.000000e+00 1735.0
6 TraesCS1D01G315700 chr1B 86.411 1148 62 37 707 1820 553629135 553630222 0.000000e+00 1170.0
7 TraesCS1D01G315700 chr1B 88.119 606 41 16 3459 4064 553631631 553632205 0.000000e+00 691.0
8 TraesCS1D01G315700 chr6A 91.538 520 40 4 166 685 510882719 510883234 0.000000e+00 713.0
9 TraesCS1D01G315700 chr5D 88.716 514 57 1 165 678 465089533 465089021 9.590000e-176 627.0
10 TraesCS1D01G315700 chr5D 87.324 355 36 5 963 1317 168714654 168714309 8.180000e-107 398.0
11 TraesCS1D01G315700 chr5D 95.625 160 7 0 1 160 544901444 544901285 1.450000e-64 257.0
12 TraesCS1D01G315700 chr5D 91.848 184 10 3 1466 1645 168714315 168714133 6.740000e-63 252.0
13 TraesCS1D01G315700 chr7B 88.506 522 52 6 163 683 41274673 41275187 3.450000e-175 625.0
14 TraesCS1D01G315700 chr7B 85.507 69 9 1 2815 2883 609840495 609840428 2.030000e-08 71.3
15 TraesCS1D01G315700 chr7D 86.381 514 69 1 165 678 91144683 91144171 9.860000e-156 560.0
16 TraesCS1D01G315700 chr5A 83.946 517 78 4 164 678 123129974 123130487 1.310000e-134 490.0
17 TraesCS1D01G315700 chr3A 83.725 510 78 5 171 678 674254789 674254283 1.020000e-130 477.0
18 TraesCS1D01G315700 chr3A 85.352 355 43 4 963 1317 223707272 223706927 3.860000e-95 359.0
19 TraesCS1D01G315700 chr3A 89.606 279 24 3 1466 1740 223706933 223706656 2.320000e-92 350.0
20 TraesCS1D01G315700 chr3A 93.605 172 11 0 1 172 439907634 439907805 1.450000e-64 257.0
21 TraesCS1D01G315700 chr2B 90.986 355 27 2 3475 3825 234631290 234631643 1.320000e-129 473.0
22 TraesCS1D01G315700 chr2B 91.573 178 11 4 2 175 56062809 56062632 4.060000e-60 243.0
23 TraesCS1D01G315700 chr2B 96.104 77 3 0 3911 3987 234631651 234631727 4.260000e-25 126.0
24 TraesCS1D01G315700 chr6D 88.172 372 40 4 311 682 295307068 295306701 1.340000e-119 440.0
25 TraesCS1D01G315700 chr6D 95.597 159 7 0 1 159 148844783 148844941 5.210000e-64 255.0
26 TraesCS1D01G315700 chr6D 95.597 159 7 0 1 159 148863662 148863820 5.210000e-64 255.0
27 TraesCS1D01G315700 chr6D 90.323 155 12 3 161 313 295351827 295351674 2.480000e-47 200.0
28 TraesCS1D01G315700 chr6D 92.308 52 3 1 3277 3327 155705691 155705640 5.630000e-09 73.1
29 TraesCS1D01G315700 chr6B 96.203 158 6 0 2 159 718396364 718396207 4.030000e-65 259.0
30 TraesCS1D01G315700 chr4D 95.625 160 6 1 1 159 219996521 219996680 5.210000e-64 255.0
31 TraesCS1D01G315700 chr3D 95.597 159 7 0 1 159 43204398 43204240 5.210000e-64 255.0
32 TraesCS1D01G315700 chr3D 90.761 184 12 2 1466 1645 580428965 580428783 1.460000e-59 241.0
33 TraesCS1D01G315700 chr3D 90.278 72 6 1 2812 2883 554962378 554962308 4.330000e-15 93.5
34 TraesCS1D01G315700 chr3B 90.141 71 6 1 2813 2883 737762024 737762093 1.560000e-14 91.6
35 TraesCS1D01G315700 chr2A 100.000 30 0 0 3848 3877 610175307 610175336 5.670000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G315700 chr1D 410789470 410793533 4063 False 7505.000000 7505 100.000000 1 4064 1 chr1D.!!$F2 4063
1 TraesCS1D01G315700 chr1A 507076139 507079508 3369 False 2139.000000 3094 90.220500 706 4064 2 chr1A.!!$F1 3358
2 TraesCS1D01G315700 chr1A 10235621 10236141 520 True 525.000000 525 84.952000 171 691 1 chr1A.!!$R1 520
3 TraesCS1D01G315700 chr1B 553629135 553632205 3070 False 1198.666667 1735 89.105667 707 4064 3 chr1B.!!$F1 3357
4 TraesCS1D01G315700 chr6A 510882719 510883234 515 False 713.000000 713 91.538000 166 685 1 chr6A.!!$F1 519
5 TraesCS1D01G315700 chr5D 465089021 465089533 512 True 627.000000 627 88.716000 165 678 1 chr5D.!!$R1 513
6 TraesCS1D01G315700 chr5D 168714133 168714654 521 True 325.000000 398 89.586000 963 1645 2 chr5D.!!$R3 682
7 TraesCS1D01G315700 chr7B 41274673 41275187 514 False 625.000000 625 88.506000 163 683 1 chr7B.!!$F1 520
8 TraesCS1D01G315700 chr7D 91144171 91144683 512 True 560.000000 560 86.381000 165 678 1 chr7D.!!$R1 513
9 TraesCS1D01G315700 chr5A 123129974 123130487 513 False 490.000000 490 83.946000 164 678 1 chr5A.!!$F1 514
10 TraesCS1D01G315700 chr3A 674254283 674254789 506 True 477.000000 477 83.725000 171 678 1 chr3A.!!$R1 507
11 TraesCS1D01G315700 chr3A 223706656 223707272 616 True 354.500000 359 87.479000 963 1740 2 chr3A.!!$R2 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 398 0.033504 GTGGAGCTTGAGACCGACAA 59.966 55.0 0.0 0.0 0.00 3.18 F
594 596 0.249699 CACTGTTGTGTGGCTCGGTA 60.250 55.0 0.0 0.0 39.24 4.02 F
1943 2125 0.318360 TGTGACGAACGAATGCGAGT 60.318 50.0 0.0 0.0 41.64 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 2094 0.163788 CGTTCGTCACATGAAGGCAC 59.836 55.0 0.0 0.0 0.00 5.01 R
2281 2463 0.178964 CCCCAGTTCCAAAAGCCAGA 60.179 55.0 0.0 0.0 0.00 3.86 R
3255 3441 0.325933 AGCAGCAGTTAGGCATCACA 59.674 50.0 0.0 0.0 35.83 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.403259 TCGTGAAGACGTACGACTACA 58.597 47.619 24.41 13.28 46.20 2.74
24 25 2.995939 TCGTGAAGACGTACGACTACAT 59.004 45.455 24.41 6.17 46.20 2.29
25 26 3.061295 TCGTGAAGACGTACGACTACATC 59.939 47.826 24.41 15.62 46.20 3.06
26 27 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
27 28 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
28 29 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
29 30 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
30 31 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
31 32 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
32 33 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
33 34 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
34 35 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
35 36 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
36 37 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
37 38 1.389106 GACTACATCAACCGCGTTGTC 59.611 52.381 16.97 5.64 43.23 3.18
38 39 1.269883 ACTACATCAACCGCGTTGTCA 60.270 47.619 16.97 4.13 43.23 3.58
39 40 1.999735 CTACATCAACCGCGTTGTCAT 59.000 47.619 16.97 5.85 43.23 3.06
40 41 2.087501 ACATCAACCGCGTTGTCATA 57.912 45.000 16.97 3.28 43.23 2.15
41 42 2.418692 ACATCAACCGCGTTGTCATAA 58.581 42.857 16.97 2.99 43.23 1.90
42 43 2.158841 ACATCAACCGCGTTGTCATAAC 59.841 45.455 16.97 0.00 43.23 1.89
43 44 0.785378 TCAACCGCGTTGTCATAACG 59.215 50.000 16.97 1.71 43.23 3.18
49 50 3.850207 CGTTGTCATAACGCTTCCG 57.150 52.632 0.00 0.00 36.82 4.30
50 51 0.247145 CGTTGTCATAACGCTTCCGC 60.247 55.000 0.00 0.00 36.82 5.54
51 52 1.076332 GTTGTCATAACGCTTCCGCT 58.924 50.000 0.00 0.00 38.22 5.52
52 53 1.463444 GTTGTCATAACGCTTCCGCTT 59.537 47.619 0.00 0.00 38.22 4.68
53 54 2.658373 TGTCATAACGCTTCCGCTTA 57.342 45.000 0.00 0.00 38.22 3.09
54 55 2.264813 TGTCATAACGCTTCCGCTTAC 58.735 47.619 0.00 0.00 38.22 2.34
55 56 1.254570 GTCATAACGCTTCCGCTTACG 59.745 52.381 0.00 0.00 38.22 3.18
78 79 3.722147 TCTACGAGGGTATGTAGACGAC 58.278 50.000 0.00 0.00 41.47 4.34
79 80 2.408271 ACGAGGGTATGTAGACGACA 57.592 50.000 0.00 0.00 43.97 4.35
80 81 2.012673 ACGAGGGTATGTAGACGACAC 58.987 52.381 0.00 0.00 42.17 3.67
81 82 2.286872 CGAGGGTATGTAGACGACACT 58.713 52.381 0.00 0.00 42.17 3.55
82 83 2.287373 CGAGGGTATGTAGACGACACTC 59.713 54.545 6.69 6.69 42.17 3.51
83 84 3.543665 GAGGGTATGTAGACGACACTCT 58.456 50.000 8.73 0.00 42.17 3.24
84 85 3.946558 GAGGGTATGTAGACGACACTCTT 59.053 47.826 8.73 0.00 42.17 2.85
85 86 3.946558 AGGGTATGTAGACGACACTCTTC 59.053 47.826 0.00 0.00 42.17 2.87
86 87 3.066481 GGGTATGTAGACGACACTCTTCC 59.934 52.174 0.00 0.00 42.17 3.46
87 88 3.066481 GGTATGTAGACGACACTCTTCCC 59.934 52.174 0.00 0.00 42.17 3.97
88 89 2.581216 TGTAGACGACACTCTTCCCT 57.419 50.000 0.00 0.00 31.20 4.20
89 90 2.434428 TGTAGACGACACTCTTCCCTC 58.566 52.381 0.00 0.00 31.20 4.30
90 91 2.040012 TGTAGACGACACTCTTCCCTCT 59.960 50.000 0.00 0.00 31.20 3.69
91 92 1.828979 AGACGACACTCTTCCCTCTC 58.171 55.000 0.00 0.00 0.00 3.20
92 93 0.448593 GACGACACTCTTCCCTCTCG 59.551 60.000 0.00 0.00 0.00 4.04
93 94 0.250814 ACGACACTCTTCCCTCTCGT 60.251 55.000 0.00 0.00 0.00 4.18
94 95 0.882474 CGACACTCTTCCCTCTCGTT 59.118 55.000 0.00 0.00 0.00 3.85
95 96 1.269998 CGACACTCTTCCCTCTCGTTT 59.730 52.381 0.00 0.00 0.00 3.60
96 97 2.668834 CGACACTCTTCCCTCTCGTTTC 60.669 54.545 0.00 0.00 0.00 2.78
97 98 2.559231 GACACTCTTCCCTCTCGTTTCT 59.441 50.000 0.00 0.00 0.00 2.52
98 99 3.757493 GACACTCTTCCCTCTCGTTTCTA 59.243 47.826 0.00 0.00 0.00 2.10
99 100 4.345854 ACACTCTTCCCTCTCGTTTCTAT 58.654 43.478 0.00 0.00 0.00 1.98
100 101 5.507637 ACACTCTTCCCTCTCGTTTCTATA 58.492 41.667 0.00 0.00 0.00 1.31
101 102 5.357596 ACACTCTTCCCTCTCGTTTCTATAC 59.642 44.000 0.00 0.00 0.00 1.47
102 103 5.357314 CACTCTTCCCTCTCGTTTCTATACA 59.643 44.000 0.00 0.00 0.00 2.29
103 104 6.039941 CACTCTTCCCTCTCGTTTCTATACAT 59.960 42.308 0.00 0.00 0.00 2.29
104 105 6.263617 ACTCTTCCCTCTCGTTTCTATACATC 59.736 42.308 0.00 0.00 0.00 3.06
105 106 6.127101 TCTTCCCTCTCGTTTCTATACATCA 58.873 40.000 0.00 0.00 0.00 3.07
106 107 5.769484 TCCCTCTCGTTTCTATACATCAC 57.231 43.478 0.00 0.00 0.00 3.06
107 108 4.583489 TCCCTCTCGTTTCTATACATCACC 59.417 45.833 0.00 0.00 0.00 4.02
108 109 4.341235 CCCTCTCGTTTCTATACATCACCA 59.659 45.833 0.00 0.00 0.00 4.17
109 110 5.011125 CCCTCTCGTTTCTATACATCACCAT 59.989 44.000 0.00 0.00 0.00 3.55
110 111 5.923114 CCTCTCGTTTCTATACATCACCATG 59.077 44.000 0.00 0.00 35.92 3.66
111 112 6.239036 CCTCTCGTTTCTATACATCACCATGA 60.239 42.308 0.00 0.00 33.72 3.07
112 113 7.290110 TCTCGTTTCTATACATCACCATGAT 57.710 36.000 0.00 0.00 37.65 2.45
113 114 7.371159 TCTCGTTTCTATACATCACCATGATC 58.629 38.462 0.00 0.00 34.28 2.92
114 115 7.231519 TCTCGTTTCTATACATCACCATGATCT 59.768 37.037 0.00 0.00 34.28 2.75
115 116 7.726216 TCGTTTCTATACATCACCATGATCTT 58.274 34.615 0.00 0.00 34.28 2.40
116 117 7.653311 TCGTTTCTATACATCACCATGATCTTG 59.347 37.037 0.00 1.60 34.28 3.02
117 118 7.570140 CGTTTCTATACATCACCATGATCTTGC 60.570 40.741 3.07 0.00 34.28 4.01
118 119 5.473039 TCTATACATCACCATGATCTTGCG 58.527 41.667 3.07 0.30 34.28 4.85
119 120 2.408271 ACATCACCATGATCTTGCGT 57.592 45.000 3.07 0.87 34.28 5.24
120 121 2.011947 ACATCACCATGATCTTGCGTG 58.988 47.619 17.02 17.02 34.28 5.34
121 122 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
122 123 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
123 124 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
135 136 2.886587 GCGTGTGCGTAGGTAAATTT 57.113 45.000 0.00 0.00 40.81 1.82
136 137 3.191735 GCGTGTGCGTAGGTAAATTTT 57.808 42.857 0.00 0.00 40.81 1.82
137 138 2.906161 GCGTGTGCGTAGGTAAATTTTG 59.094 45.455 0.00 0.00 40.81 2.44
138 139 3.364167 GCGTGTGCGTAGGTAAATTTTGA 60.364 43.478 0.00 0.00 40.81 2.69
139 140 4.774586 CGTGTGCGTAGGTAAATTTTGAA 58.225 39.130 0.00 0.00 0.00 2.69
140 141 5.206299 CGTGTGCGTAGGTAAATTTTGAAA 58.794 37.500 0.00 0.00 0.00 2.69
141 142 5.854338 CGTGTGCGTAGGTAAATTTTGAAAT 59.146 36.000 0.00 0.00 0.00 2.17
142 143 6.361214 CGTGTGCGTAGGTAAATTTTGAAATT 59.639 34.615 0.00 0.00 40.15 1.82
143 144 7.534578 CGTGTGCGTAGGTAAATTTTGAAATTA 59.465 33.333 0.00 0.00 37.62 1.40
144 145 8.632551 GTGTGCGTAGGTAAATTTTGAAATTAC 58.367 33.333 0.00 0.00 37.62 1.89
145 146 8.569641 TGTGCGTAGGTAAATTTTGAAATTACT 58.430 29.630 0.00 4.80 37.62 2.24
153 154 9.345517 GGTAAATTTTGAAATTACTACGTTCCC 57.654 33.333 0.00 0.00 37.62 3.97
158 159 8.674263 TTTTGAAATTACTACGTTCCCTAACA 57.326 30.769 0.00 0.00 35.16 2.41
159 160 8.851541 TTTGAAATTACTACGTTCCCTAACAT 57.148 30.769 0.00 0.00 35.16 2.71
160 161 8.483307 TTGAAATTACTACGTTCCCTAACATC 57.517 34.615 0.00 0.00 35.16 3.06
161 162 7.043565 TGAAATTACTACGTTCCCTAACATCC 58.956 38.462 0.00 0.00 35.16 3.51
280 282 1.335506 GGCTCGATCATCTTCTCGTCC 60.336 57.143 0.00 0.00 36.33 4.79
396 398 0.033504 GTGGAGCTTGAGACCGACAA 59.966 55.000 0.00 0.00 0.00 3.18
488 490 1.229209 AGACGCCTCTTGAGGGGAA 60.229 57.895 31.50 0.00 43.67 3.97
594 596 0.249699 CACTGTTGTGTGGCTCGGTA 60.250 55.000 0.00 0.00 39.24 4.02
863 869 1.736032 GCTGTACTGTAGCCACCGAAG 60.736 57.143 1.46 0.00 35.15 3.79
1011 1019 4.592192 GCCGAGATGCTGCCGCTA 62.592 66.667 0.70 0.00 36.97 4.26
1047 1055 2.441901 CGCCTCCTGCTCTCCTCT 60.442 66.667 0.00 0.00 38.05 3.69
1353 1394 0.683504 AGGAGGACGCCGTCAGTATT 60.684 55.000 20.08 0.00 33.68 1.89
1357 1398 1.588139 GACGCCGTCAGTATTCCCG 60.588 63.158 13.23 0.00 32.09 5.14
1379 1420 3.843999 CTCTAGTTCAGAGCACCAAGTC 58.156 50.000 0.00 0.00 44.34 3.01
1381 1422 2.829741 AGTTCAGAGCACCAAGTCTC 57.170 50.000 0.00 0.00 0.00 3.36
1382 1423 2.324541 AGTTCAGAGCACCAAGTCTCT 58.675 47.619 0.00 0.00 40.06 3.10
1383 1424 3.501349 AGTTCAGAGCACCAAGTCTCTA 58.499 45.455 0.00 0.00 37.56 2.43
1385 1426 4.159506 AGTTCAGAGCACCAAGTCTCTATC 59.840 45.833 0.00 0.00 37.56 2.08
1386 1427 3.701664 TCAGAGCACCAAGTCTCTATCA 58.298 45.455 0.00 0.00 37.56 2.15
1387 1428 3.698539 TCAGAGCACCAAGTCTCTATCAG 59.301 47.826 0.00 0.00 37.56 2.90
1388 1429 3.030291 AGAGCACCAAGTCTCTATCAGG 58.970 50.000 0.00 0.00 37.86 3.86
1389 1430 2.102252 GAGCACCAAGTCTCTATCAGGG 59.898 54.545 0.00 0.00 0.00 4.45
1537 1609 3.273434 TCTCTCTGCATTTTGGGATTCG 58.727 45.455 0.00 0.00 0.00 3.34
1582 1658 6.759272 TCTAGCTAACACAATCTGAACAAGT 58.241 36.000 0.00 0.00 0.00 3.16
1587 1663 6.972328 GCTAACACAATCTGAACAAGTTTTCA 59.028 34.615 0.00 0.00 34.30 2.69
1721 1797 0.613260 AGAACGTGGGCTCAAGCATA 59.387 50.000 0.00 0.00 44.36 3.14
1773 1849 0.676466 CAGCCCAGCGTATGAAACCA 60.676 55.000 0.00 0.00 0.00 3.67
1793 1869 1.276421 ACTGTAGGAAAGCAGTGCGAT 59.724 47.619 10.00 1.90 43.45 4.58
1805 1881 0.320771 AGTGCGATTGGGTGACACTC 60.321 55.000 5.39 1.01 36.95 3.51
1816 1892 1.539496 GGTGACACTCGTGCAGGTTAA 60.539 52.381 6.26 0.00 0.00 2.01
1817 1893 1.525619 GTGACACTCGTGCAGGTTAAC 59.474 52.381 6.26 0.00 0.00 2.01
1818 1894 1.411246 TGACACTCGTGCAGGTTAACT 59.589 47.619 6.26 0.00 0.00 2.24
1819 1895 2.624364 TGACACTCGTGCAGGTTAACTA 59.376 45.455 6.26 0.00 0.00 2.24
1820 1896 3.068448 TGACACTCGTGCAGGTTAACTAA 59.932 43.478 6.26 0.00 0.00 2.24
1821 1897 3.387397 ACACTCGTGCAGGTTAACTAAC 58.613 45.455 6.26 0.00 35.50 2.34
1822 1898 3.181473 ACACTCGTGCAGGTTAACTAACA 60.181 43.478 6.26 0.00 37.92 2.41
1823 1899 3.183775 CACTCGTGCAGGTTAACTAACAC 59.816 47.826 6.26 9.85 37.92 3.32
1825 1901 3.645884 TCGTGCAGGTTAACTAACACTC 58.354 45.455 17.22 0.00 37.92 3.51
1827 1903 2.735134 GTGCAGGTTAACTAACACTCGG 59.265 50.000 5.42 0.00 37.92 4.63
1828 1904 2.366266 TGCAGGTTAACTAACACTCGGT 59.634 45.455 5.42 0.00 37.92 4.69
1829 1905 3.181463 TGCAGGTTAACTAACACTCGGTT 60.181 43.478 5.42 0.00 43.62 4.44
1830 1906 3.431233 GCAGGTTAACTAACACTCGGTTC 59.569 47.826 5.42 0.00 40.96 3.62
1831 1907 4.798593 GCAGGTTAACTAACACTCGGTTCT 60.799 45.833 5.42 0.00 40.96 3.01
1840 2019 3.099267 ACACTCGGTTCTCACTTCTTG 57.901 47.619 0.00 0.00 0.00 3.02
1847 2026 2.106684 GGTTCTCACTTCTTGGGGTCTT 59.893 50.000 0.00 0.00 0.00 3.01
1854 2033 5.745227 TCACTTCTTGGGGTCTTGATATTC 58.255 41.667 0.00 0.00 0.00 1.75
1856 2035 6.672218 TCACTTCTTGGGGTCTTGATATTCTA 59.328 38.462 0.00 0.00 0.00 2.10
1857 2036 6.763610 CACTTCTTGGGGTCTTGATATTCTAC 59.236 42.308 0.00 0.00 0.00 2.59
1858 2037 6.674419 ACTTCTTGGGGTCTTGATATTCTACT 59.326 38.462 0.00 0.00 0.00 2.57
1859 2038 7.182930 ACTTCTTGGGGTCTTGATATTCTACTT 59.817 37.037 0.00 0.00 0.00 2.24
1860 2039 6.889198 TCTTGGGGTCTTGATATTCTACTTG 58.111 40.000 0.00 0.00 0.00 3.16
1861 2040 6.443849 TCTTGGGGTCTTGATATTCTACTTGT 59.556 38.462 0.00 0.00 0.00 3.16
1862 2041 5.989477 TGGGGTCTTGATATTCTACTTGTG 58.011 41.667 0.00 0.00 0.00 3.33
1863 2042 4.816925 GGGGTCTTGATATTCTACTTGTGC 59.183 45.833 0.00 0.00 0.00 4.57
1864 2043 5.428253 GGGTCTTGATATTCTACTTGTGCA 58.572 41.667 0.00 0.00 0.00 4.57
1865 2044 5.880332 GGGTCTTGATATTCTACTTGTGCAA 59.120 40.000 0.00 0.00 0.00 4.08
1866 2045 6.183360 GGGTCTTGATATTCTACTTGTGCAAC 60.183 42.308 0.00 0.00 37.35 4.17
1867 2046 6.595716 GGTCTTGATATTCTACTTGTGCAACT 59.404 38.462 0.00 0.00 38.04 3.16
1868 2047 7.119846 GGTCTTGATATTCTACTTGTGCAACTT 59.880 37.037 0.00 0.00 38.04 2.66
1869 2048 8.507249 GTCTTGATATTCTACTTGTGCAACTTT 58.493 33.333 0.00 0.00 38.04 2.66
1870 2049 9.066892 TCTTGATATTCTACTTGTGCAACTTTT 57.933 29.630 0.00 0.00 38.04 2.27
1906 2085 5.296151 TCTGAGAGTGAAAAGTCCATTGT 57.704 39.130 0.00 0.00 0.00 2.71
1907 2086 5.684704 TCTGAGAGTGAAAAGTCCATTGTT 58.315 37.500 0.00 0.00 0.00 2.83
1908 2087 5.760253 TCTGAGAGTGAAAAGTCCATTGTTC 59.240 40.000 0.00 0.00 0.00 3.18
1910 2089 5.528690 TGAGAGTGAAAAGTCCATTGTTCTG 59.471 40.000 0.00 0.00 0.00 3.02
1911 2090 5.440610 AGAGTGAAAAGTCCATTGTTCTGT 58.559 37.500 0.00 0.00 0.00 3.41
1912 2091 5.888161 AGAGTGAAAAGTCCATTGTTCTGTT 59.112 36.000 0.00 0.00 0.00 3.16
1915 2094 6.813152 AGTGAAAAGTCCATTGTTCTGTTTTG 59.187 34.615 0.00 0.00 0.00 2.44
1920 2099 3.030291 TCCATTGTTCTGTTTTGTGCCT 58.970 40.909 0.00 0.00 0.00 4.75
1925 2107 4.044336 TGTTCTGTTTTGTGCCTTCATG 57.956 40.909 0.00 0.00 0.00 3.07
1928 2110 3.286353 TCTGTTTTGTGCCTTCATGTGA 58.714 40.909 0.00 0.00 0.00 3.58
1940 2122 0.713329 TCATGTGACGAACGAATGCG 59.287 50.000 0.14 0.00 44.79 4.73
1943 2125 0.318360 TGTGACGAACGAATGCGAGT 60.318 50.000 0.00 0.00 41.64 4.18
1946 2128 2.213575 GTGACGAACGAATGCGAGTATC 59.786 50.000 0.00 0.00 41.64 2.24
1948 2130 2.451132 ACGAACGAATGCGAGTATCTG 58.549 47.619 0.00 0.00 41.64 2.90
1949 2131 1.188138 CGAACGAATGCGAGTATCTGC 59.812 52.381 0.00 0.00 41.64 4.26
1950 2132 2.193447 GAACGAATGCGAGTATCTGCA 58.807 47.619 0.00 0.00 45.40 4.41
1957 2139 4.797800 ATGCGAGTATCTGCATCATACT 57.202 40.909 15.20 15.20 46.65 2.12
1958 2140 3.905784 TGCGAGTATCTGCATCATACTG 58.094 45.455 18.66 13.19 39.09 2.74
1959 2141 3.569701 TGCGAGTATCTGCATCATACTGA 59.430 43.478 18.66 0.00 39.09 3.41
1960 2142 4.219288 TGCGAGTATCTGCATCATACTGAT 59.781 41.667 18.66 5.59 39.09 2.90
1961 2143 5.415701 TGCGAGTATCTGCATCATACTGATA 59.584 40.000 18.66 4.72 39.09 2.15
1962 2144 5.741510 GCGAGTATCTGCATCATACTGATAC 59.258 44.000 18.66 14.58 43.64 2.24
1963 2145 5.962423 CGAGTATCTGCATCATACTGATACG 59.038 44.000 18.66 13.31 45.85 3.06
1964 2146 6.201226 AGTATCTGCATCATACTGATACGG 57.799 41.667 14.72 0.00 45.85 4.02
1965 2147 3.303881 TCTGCATCATACTGATACGGC 57.696 47.619 0.00 0.00 34.28 5.68
1966 2148 2.627699 TCTGCATCATACTGATACGGCA 59.372 45.455 0.00 0.00 34.28 5.69
1967 2149 3.259123 TCTGCATCATACTGATACGGCAT 59.741 43.478 0.00 0.00 34.32 4.40
1968 2150 3.328505 TGCATCATACTGATACGGCATG 58.671 45.455 0.00 0.00 34.28 4.06
1969 2151 3.244181 TGCATCATACTGATACGGCATGT 60.244 43.478 0.00 0.00 34.28 3.21
1970 2152 3.369147 GCATCATACTGATACGGCATGTC 59.631 47.826 0.00 0.00 34.28 3.06
1971 2153 4.814147 CATCATACTGATACGGCATGTCT 58.186 43.478 0.00 0.00 34.28 3.41
1972 2154 4.243007 TCATACTGATACGGCATGTCTG 57.757 45.455 0.00 0.00 0.00 3.51
1973 2155 4.857283 ATCATACTGATACGGCATGTCTGC 60.857 45.833 0.00 0.00 40.56 4.26
1974 2156 7.246698 ATCATACTGATACGGCATGTCTGCA 62.247 44.000 0.00 0.00 41.96 4.41
1975 2157 8.632295 ATCATACTGATACGGCATGTCTGCAA 62.632 42.308 0.00 0.00 41.96 4.08
1976 2158 9.989530 ATCATACTGATACGGCATGTCTGCAAA 62.990 40.741 0.00 0.00 41.96 3.68
1989 2171 7.273188 CATGTCTGCAAATACACTGATTTTG 57.727 36.000 0.00 0.00 34.30 2.44
1990 2172 5.771469 TGTCTGCAAATACACTGATTTTGG 58.229 37.500 0.00 0.00 32.33 3.28
1991 2173 5.301551 TGTCTGCAAATACACTGATTTTGGT 59.698 36.000 0.00 0.00 32.33 3.67
1992 2174 6.183360 TGTCTGCAAATACACTGATTTTGGTT 60.183 34.615 0.00 0.00 32.33 3.67
1993 2175 6.144402 GTCTGCAAATACACTGATTTTGGTTG 59.856 38.462 0.00 0.00 32.33 3.77
2009 2191 4.846779 TGGTTGGCAGATACTTGAAAAC 57.153 40.909 0.00 0.00 0.00 2.43
2017 2199 6.714810 TGGCAGATACTTGAAAACATTACTGT 59.285 34.615 0.00 0.00 37.12 3.55
2039 2221 6.578944 TGTTATATGTCTGCAGGAAACGTAT 58.421 36.000 15.13 16.90 0.00 3.06
2045 2227 2.826128 TCTGCAGGAAACGTATGAGTCT 59.174 45.455 15.13 0.00 0.00 3.24
2048 2230 3.762288 TGCAGGAAACGTATGAGTCTACT 59.238 43.478 0.00 0.00 0.00 2.57
2072 2254 6.927294 AAAGTTATCGATGACCTTTGGATC 57.073 37.500 15.99 0.00 0.00 3.36
2251 2433 0.760567 TCCTCCATCCACAGGATCCG 60.761 60.000 5.98 3.99 40.98 4.18
2281 2463 7.039504 GCCACAAATATCATTATCAATCCAGGT 60.040 37.037 0.00 0.00 0.00 4.00
2454 2636 6.734137 TGTTCTTGTTTACTACCAGCAAATG 58.266 36.000 0.00 0.00 0.00 2.32
2455 2637 6.320164 TGTTCTTGTTTACTACCAGCAAATGT 59.680 34.615 0.00 0.00 0.00 2.71
2544 2726 0.678395 AGATGGGTGCTGCTCTATCG 59.322 55.000 0.00 0.00 0.00 2.92
2727 2912 3.556004 GCAGTAACCTTGAGCTGAAGTCT 60.556 47.826 12.14 1.02 0.00 3.24
2740 2925 1.157585 GAAGTCTTCAAAGGGGACGC 58.842 55.000 7.76 0.00 35.42 5.19
2760 2945 2.096614 GCATGACATTGTTGCTGCAAAC 60.097 45.455 17.80 11.72 33.61 2.93
2832 3017 1.388837 AAACCGGTGGAACAGTTGCC 61.389 55.000 8.52 0.00 41.80 4.52
2870 3055 6.065374 TGTGTGAGCAGGTAAAAGGAATTTA 58.935 36.000 0.00 0.00 32.27 1.40
2903 3088 7.814107 TCCAAAATTTAACATGTCATTCAGAGC 59.186 33.333 0.00 0.00 0.00 4.09
3007 3192 2.690840 ACTCCAGGTACTTGGACAACT 58.309 47.619 22.02 3.17 34.60 3.16
3216 3402 5.657745 TGGTAGGATTACTTCGGTATTGTCA 59.342 40.000 0.00 0.00 0.00 3.58
3218 3404 7.043565 GGTAGGATTACTTCGGTATTGTCAAA 58.956 38.462 0.00 0.00 0.00 2.69
3222 3408 8.483758 AGGATTACTTCGGTATTGTCAAACTAT 58.516 33.333 0.00 0.00 0.00 2.12
3255 3441 1.497309 TTCAATGCCCCTTCGGAGGT 61.497 55.000 9.48 0.00 41.85 3.85
3305 3492 0.473755 TGTCACTGACCCAACTGCAT 59.526 50.000 6.72 0.00 0.00 3.96
3309 3496 0.607489 ACTGACCCAACTGCATCTGC 60.607 55.000 0.00 0.00 42.50 4.26
3320 3507 1.425428 GCATCTGCAGTTACGGCAC 59.575 57.895 14.67 0.00 41.59 5.01
3347 3534 4.277174 AGCTCAGTCTTACATCACTATCCG 59.723 45.833 0.00 0.00 0.00 4.18
3351 3538 2.292569 GTCTTACATCACTATCCGGCGA 59.707 50.000 9.30 0.00 0.00 5.54
3616 3804 4.503741 AAAACATGTCGATGGTTTCAGG 57.496 40.909 0.00 0.00 44.72 3.86
3719 3907 4.302455 CTGTATTGCTTCCAGTATCCTCG 58.698 47.826 0.00 0.00 0.00 4.63
3766 3954 6.094464 CACTATCTGGAATCAAATTCAGCACA 59.906 38.462 2.42 0.00 41.03 4.57
3879 4067 4.521146 CCTGGTTAGCAATCTCAATCTGT 58.479 43.478 0.00 0.00 0.00 3.41
4021 4209 8.178313 TCCTTAGTTTTTCATTCTTTTCCTCC 57.822 34.615 0.00 0.00 0.00 4.30
4040 4228 6.307776 TCCTCCTCTGTACTCCTATGTATTG 58.692 44.000 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
6 7 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
8 9 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
9 10 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
10 11 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
11 12 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
12 13 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
13 14 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
14 15 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
15 16 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
16 17 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
17 18 1.389106 GACAACGCGGTTGATGTAGTC 59.611 52.381 22.26 10.01 45.28 2.59
18 19 1.269883 TGACAACGCGGTTGATGTAGT 60.270 47.619 22.26 4.69 45.28 2.73
19 20 1.424403 TGACAACGCGGTTGATGTAG 58.576 50.000 22.26 1.41 45.28 2.74
20 21 2.087501 ATGACAACGCGGTTGATGTA 57.912 45.000 22.26 9.68 45.28 2.29
21 22 2.087501 TATGACAACGCGGTTGATGT 57.912 45.000 22.26 13.84 45.28 3.06
22 23 2.769376 GTTATGACAACGCGGTTGATG 58.231 47.619 22.26 11.18 45.28 3.07
23 24 1.392168 CGTTATGACAACGCGGTTGAT 59.608 47.619 22.26 12.10 45.28 2.57
24 25 0.785378 CGTTATGACAACGCGGTTGA 59.215 50.000 22.26 6.79 45.28 3.18
31 32 3.850207 CGGAAGCGTTATGACAACG 57.150 52.632 5.22 5.22 45.56 4.10
48 49 1.354506 CCCTCGTAGACCGTAAGCG 59.645 63.158 0.00 0.00 37.94 4.68
49 50 1.668419 TACCCTCGTAGACCGTAAGC 58.332 55.000 0.00 0.00 37.94 3.09
50 51 3.209410 ACATACCCTCGTAGACCGTAAG 58.791 50.000 0.00 0.00 37.94 2.34
51 52 3.281727 ACATACCCTCGTAGACCGTAA 57.718 47.619 0.00 0.00 37.94 3.18
52 53 3.641436 TCTACATACCCTCGTAGACCGTA 59.359 47.826 0.00 0.00 39.28 4.02
53 54 2.435805 TCTACATACCCTCGTAGACCGT 59.564 50.000 0.00 0.00 39.28 4.83
54 55 3.117491 TCTACATACCCTCGTAGACCG 57.883 52.381 0.00 0.00 39.28 4.79
57 58 3.132824 TGTCGTCTACATACCCTCGTAGA 59.867 47.826 0.00 0.00 41.32 2.59
58 59 3.247173 GTGTCGTCTACATACCCTCGTAG 59.753 52.174 0.00 0.00 41.10 3.51
59 60 3.118629 AGTGTCGTCTACATACCCTCGTA 60.119 47.826 0.00 0.00 41.10 3.43
60 61 2.012673 GTGTCGTCTACATACCCTCGT 58.987 52.381 0.00 0.00 41.10 4.18
61 62 2.286872 AGTGTCGTCTACATACCCTCG 58.713 52.381 0.00 0.00 41.10 4.63
62 63 3.543665 AGAGTGTCGTCTACATACCCTC 58.456 50.000 0.00 0.00 41.10 4.30
63 64 3.648507 AGAGTGTCGTCTACATACCCT 57.351 47.619 0.00 0.00 41.10 4.34
64 65 3.066481 GGAAGAGTGTCGTCTACATACCC 59.934 52.174 0.00 0.00 41.10 3.69
65 66 3.066481 GGGAAGAGTGTCGTCTACATACC 59.934 52.174 0.00 0.00 41.10 2.73
66 67 3.946558 AGGGAAGAGTGTCGTCTACATAC 59.053 47.826 0.00 0.00 41.10 2.39
67 68 4.080469 AGAGGGAAGAGTGTCGTCTACATA 60.080 45.833 0.00 0.00 41.10 2.29
68 69 3.018149 GAGGGAAGAGTGTCGTCTACAT 58.982 50.000 0.00 0.00 41.10 2.29
69 70 2.040012 AGAGGGAAGAGTGTCGTCTACA 59.960 50.000 0.00 0.00 35.06 2.74
70 71 2.679336 GAGAGGGAAGAGTGTCGTCTAC 59.321 54.545 0.00 0.00 0.00 2.59
71 72 2.677325 CGAGAGGGAAGAGTGTCGTCTA 60.677 54.545 0.00 0.00 0.00 2.59
72 73 1.828979 GAGAGGGAAGAGTGTCGTCT 58.171 55.000 0.00 0.00 0.00 4.18
73 74 0.448593 CGAGAGGGAAGAGTGTCGTC 59.551 60.000 0.00 0.00 0.00 4.20
74 75 0.250814 ACGAGAGGGAAGAGTGTCGT 60.251 55.000 0.00 0.00 37.81 4.34
75 76 0.882474 AACGAGAGGGAAGAGTGTCG 59.118 55.000 0.00 0.00 35.69 4.35
76 77 2.559231 AGAAACGAGAGGGAAGAGTGTC 59.441 50.000 0.00 0.00 0.00 3.67
77 78 2.599677 AGAAACGAGAGGGAAGAGTGT 58.400 47.619 0.00 0.00 0.00 3.55
78 79 4.993029 ATAGAAACGAGAGGGAAGAGTG 57.007 45.455 0.00 0.00 0.00 3.51
79 80 5.507637 TGTATAGAAACGAGAGGGAAGAGT 58.492 41.667 0.00 0.00 0.00 3.24
80 81 6.263392 TGATGTATAGAAACGAGAGGGAAGAG 59.737 42.308 0.00 0.00 0.00 2.85
81 82 6.039493 GTGATGTATAGAAACGAGAGGGAAGA 59.961 42.308 0.00 0.00 0.00 2.87
82 83 6.210078 GTGATGTATAGAAACGAGAGGGAAG 58.790 44.000 0.00 0.00 0.00 3.46
83 84 5.068723 GGTGATGTATAGAAACGAGAGGGAA 59.931 44.000 0.00 0.00 0.00 3.97
84 85 4.583489 GGTGATGTATAGAAACGAGAGGGA 59.417 45.833 0.00 0.00 0.00 4.20
85 86 4.341235 TGGTGATGTATAGAAACGAGAGGG 59.659 45.833 0.00 0.00 0.00 4.30
86 87 5.515797 TGGTGATGTATAGAAACGAGAGG 57.484 43.478 0.00 0.00 0.00 3.69
87 88 6.739112 TCATGGTGATGTATAGAAACGAGAG 58.261 40.000 0.00 0.00 0.00 3.20
88 89 6.709018 TCATGGTGATGTATAGAAACGAGA 57.291 37.500 0.00 0.00 0.00 4.04
89 90 7.374272 AGATCATGGTGATGTATAGAAACGAG 58.626 38.462 0.00 0.00 37.20 4.18
90 91 7.290110 AGATCATGGTGATGTATAGAAACGA 57.710 36.000 0.00 0.00 37.20 3.85
91 92 7.570140 GCAAGATCATGGTGATGTATAGAAACG 60.570 40.741 0.00 0.00 37.20 3.60
92 93 7.570140 CGCAAGATCATGGTGATGTATAGAAAC 60.570 40.741 0.00 0.00 37.20 2.78
93 94 6.424812 CGCAAGATCATGGTGATGTATAGAAA 59.575 38.462 0.00 0.00 37.20 2.52
94 95 5.928264 CGCAAGATCATGGTGATGTATAGAA 59.072 40.000 0.00 0.00 37.20 2.10
95 96 5.011023 ACGCAAGATCATGGTGATGTATAGA 59.989 40.000 0.00 0.00 37.20 1.98
96 97 5.119743 CACGCAAGATCATGGTGATGTATAG 59.880 44.000 11.70 0.00 37.20 1.31
97 98 4.990426 CACGCAAGATCATGGTGATGTATA 59.010 41.667 11.70 0.00 37.20 1.47
98 99 3.811497 CACGCAAGATCATGGTGATGTAT 59.189 43.478 11.70 0.00 37.20 2.29
99 100 3.197265 CACGCAAGATCATGGTGATGTA 58.803 45.455 11.70 0.00 37.20 2.29
100 101 2.011947 CACGCAAGATCATGGTGATGT 58.988 47.619 11.70 0.00 37.20 3.06
101 102 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
102 103 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
103 104 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
104 105 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
105 106 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
106 107 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
107 108 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
108 109 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
109 110 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
110 111 0.736325 ACCTACGCACACGCAAGATC 60.736 55.000 0.00 0.00 45.53 2.75
111 112 0.528924 TACCTACGCACACGCAAGAT 59.471 50.000 0.00 0.00 45.53 2.40
112 113 0.314618 TTACCTACGCACACGCAAGA 59.685 50.000 0.00 0.00 45.53 3.02
113 114 1.141645 TTTACCTACGCACACGCAAG 58.858 50.000 0.00 0.00 45.53 4.01
114 115 1.798283 ATTTACCTACGCACACGCAA 58.202 45.000 0.00 0.00 45.53 4.85
115 116 1.798283 AATTTACCTACGCACACGCA 58.202 45.000 0.00 0.00 45.53 5.24
116 117 2.886587 AAATTTACCTACGCACACGC 57.113 45.000 0.00 0.00 45.53 5.34
117 118 6.361214 AATTTCAAAATTTACCTACGCACACG 59.639 34.615 0.00 0.00 39.30 4.49
118 119 7.631915 AATTTCAAAATTTACCTACGCACAC 57.368 32.000 0.00 0.00 35.16 3.82
119 120 8.569641 AGTAATTTCAAAATTTACCTACGCACA 58.430 29.630 6.06 0.00 39.24 4.57
120 121 8.959734 AGTAATTTCAAAATTTACCTACGCAC 57.040 30.769 6.06 0.00 39.24 5.34
122 123 9.202545 CGTAGTAATTTCAAAATTTACCTACGC 57.797 33.333 23.29 10.35 41.85 4.42
127 128 9.345517 GGGAACGTAGTAATTTCAAAATTTACC 57.654 33.333 6.06 0.00 45.00 2.85
132 133 9.287373 TGTTAGGGAACGTAGTAATTTCAAAAT 57.713 29.630 0.00 0.00 45.00 1.82
133 134 8.674263 TGTTAGGGAACGTAGTAATTTCAAAA 57.326 30.769 0.00 0.00 45.00 2.44
134 135 8.851541 ATGTTAGGGAACGTAGTAATTTCAAA 57.148 30.769 0.00 0.00 45.00 2.69
135 136 7.550196 GGATGTTAGGGAACGTAGTAATTTCAA 59.450 37.037 0.00 0.00 45.00 2.69
136 137 7.043565 GGATGTTAGGGAACGTAGTAATTTCA 58.956 38.462 0.00 0.00 45.00 2.69
137 138 6.481313 GGGATGTTAGGGAACGTAGTAATTTC 59.519 42.308 0.00 0.00 45.00 2.17
138 139 6.351711 GGGATGTTAGGGAACGTAGTAATTT 58.648 40.000 0.00 0.00 45.00 1.82
139 140 5.163269 GGGGATGTTAGGGAACGTAGTAATT 60.163 44.000 0.00 0.00 45.00 1.40
140 141 4.346127 GGGGATGTTAGGGAACGTAGTAAT 59.654 45.833 0.00 0.00 45.00 1.89
141 142 3.706086 GGGGATGTTAGGGAACGTAGTAA 59.294 47.826 0.00 0.00 45.00 2.24
142 143 3.299503 GGGGATGTTAGGGAACGTAGTA 58.700 50.000 0.00 0.00 45.00 1.82
144 145 1.415289 GGGGGATGTTAGGGAACGTAG 59.585 57.143 0.00 0.00 38.51 3.51
145 146 1.499368 GGGGGATGTTAGGGAACGTA 58.501 55.000 0.00 0.00 38.51 3.57
146 147 2.304069 GGGGGATGTTAGGGAACGT 58.696 57.895 0.00 0.00 38.51 3.99
215 217 1.519455 CTCCGGCCATGTTCGTCTC 60.519 63.158 2.24 0.00 0.00 3.36
216 218 2.579201 CTCCGGCCATGTTCGTCT 59.421 61.111 2.24 0.00 0.00 4.18
263 265 2.614520 GACAGGACGAGAAGATGATCGA 59.385 50.000 1.13 0.00 41.40 3.59
396 398 6.323996 TCTCAACATATTGATTCCGACTAGGT 59.676 38.462 0.00 0.00 43.92 3.08
451 453 4.688021 GTCTGGTCTGGTCTATCAACATC 58.312 47.826 0.00 0.00 0.00 3.06
488 490 4.917385 TGAGCTAGTCTCACTTCTCTTCT 58.083 43.478 11.38 0.00 46.34 2.85
537 539 4.162131 ACCAAAGTTTGCAAGGAAATGACT 59.838 37.500 10.25 0.43 0.00 3.41
594 596 2.508928 CACAACACCTGGACCGGT 59.491 61.111 6.92 6.92 37.93 5.28
605 607 3.866066 GCTTACAGAGATCAGGCACAACA 60.866 47.826 0.00 0.00 0.00 3.33
701 703 9.762933 AGCAAAAGAACAAGCAAGAATAATTTA 57.237 25.926 0.00 0.00 0.00 1.40
702 704 8.667076 AGCAAAAGAACAAGCAAGAATAATTT 57.333 26.923 0.00 0.00 0.00 1.82
703 705 8.667076 AAGCAAAAGAACAAGCAAGAATAATT 57.333 26.923 0.00 0.00 0.00 1.40
704 706 8.667076 AAAGCAAAAGAACAAGCAAGAATAAT 57.333 26.923 0.00 0.00 0.00 1.28
736 738 8.171840 GGATCTTTTTGATGTAGAGTCTTTTCG 58.828 37.037 0.00 0.00 35.14 3.46
782 784 0.662619 CTCAGTTGTTTGCTTCGCCA 59.337 50.000 0.00 0.00 0.00 5.69
783 785 0.944386 TCTCAGTTGTTTGCTTCGCC 59.056 50.000 0.00 0.00 0.00 5.54
784 786 2.755836 TTCTCAGTTGTTTGCTTCGC 57.244 45.000 0.00 0.00 0.00 4.70
785 787 5.331902 TCTTTTTCTCAGTTGTTTGCTTCG 58.668 37.500 0.00 0.00 0.00 3.79
788 790 6.101997 CCTTTCTTTTTCTCAGTTGTTTGCT 58.898 36.000 0.00 0.00 0.00 3.91
790 792 5.291858 GCCCTTTCTTTTTCTCAGTTGTTTG 59.708 40.000 0.00 0.00 0.00 2.93
791 793 5.419542 GCCCTTTCTTTTTCTCAGTTGTTT 58.580 37.500 0.00 0.00 0.00 2.83
792 794 4.141937 GGCCCTTTCTTTTTCTCAGTTGTT 60.142 41.667 0.00 0.00 0.00 2.83
793 795 3.384789 GGCCCTTTCTTTTTCTCAGTTGT 59.615 43.478 0.00 0.00 0.00 3.32
794 796 3.384467 TGGCCCTTTCTTTTTCTCAGTTG 59.616 43.478 0.00 0.00 0.00 3.16
795 797 3.384789 GTGGCCCTTTCTTTTTCTCAGTT 59.615 43.478 0.00 0.00 0.00 3.16
796 798 2.959030 GTGGCCCTTTCTTTTTCTCAGT 59.041 45.455 0.00 0.00 0.00 3.41
797 799 2.030805 CGTGGCCCTTTCTTTTTCTCAG 60.031 50.000 0.00 0.00 0.00 3.35
798 800 1.953686 CGTGGCCCTTTCTTTTTCTCA 59.046 47.619 0.00 0.00 0.00 3.27
799 801 1.269723 CCGTGGCCCTTTCTTTTTCTC 59.730 52.381 0.00 0.00 0.00 2.87
800 802 1.328279 CCGTGGCCCTTTCTTTTTCT 58.672 50.000 0.00 0.00 0.00 2.52
801 803 0.319555 GCCGTGGCCCTTTCTTTTTC 60.320 55.000 0.00 0.00 34.56 2.29
802 804 1.045911 TGCCGTGGCCCTTTCTTTTT 61.046 50.000 8.69 0.00 41.09 1.94
863 869 3.886694 TGTGCTGCAACGTGTGGC 61.887 61.111 2.77 0.00 0.00 5.01
1069 1077 2.755469 TACGGTCGTGTAGGGGGC 60.755 66.667 6.25 0.00 0.00 5.80
1209 1250 3.292656 CAGAAGCTCCTGCCTCGA 58.707 61.111 0.00 0.00 40.80 4.04
1374 1415 4.226168 AGGGAAAACCCTGATAGAGACTTG 59.774 45.833 7.04 0.00 41.63 3.16
1376 1417 4.081695 AGGGAAAACCCTGATAGAGACT 57.918 45.455 7.04 0.00 41.63 3.24
1377 1418 5.189145 TGTTAGGGAAAACCCTGATAGAGAC 59.811 44.000 16.94 5.83 40.87 3.36
1379 1420 5.425539 TCTGTTAGGGAAAACCCTGATAGAG 59.574 44.000 17.58 11.22 38.24 2.43
1381 1422 5.693769 TCTGTTAGGGAAAACCCTGATAG 57.306 43.478 16.94 15.52 40.87 2.08
1382 1423 5.550403 ACTTCTGTTAGGGAAAACCCTGATA 59.450 40.000 16.94 7.14 40.87 2.15
1383 1424 4.354087 ACTTCTGTTAGGGAAAACCCTGAT 59.646 41.667 16.94 0.00 40.87 2.90
1385 1426 4.100279 ACTTCTGTTAGGGAAAACCCTG 57.900 45.455 16.94 1.57 40.87 4.45
1386 1427 4.447325 GGAACTTCTGTTAGGGAAAACCCT 60.447 45.833 12.57 12.57 43.47 4.34
1387 1428 3.825014 GGAACTTCTGTTAGGGAAAACCC 59.175 47.826 0.00 0.00 36.80 4.11
1388 1429 4.466827 TGGAACTTCTGTTAGGGAAAACC 58.533 43.478 0.00 0.00 36.39 3.27
1389 1430 5.535030 ACATGGAACTTCTGTTAGGGAAAAC 59.465 40.000 0.00 0.00 36.39 2.43
1398 1459 3.136443 TGGAGACACATGGAACTTCTGTT 59.864 43.478 0.00 0.00 35.31 3.16
1402 1463 2.303022 TCCTGGAGACACATGGAACTTC 59.697 50.000 0.00 0.00 35.60 3.01
1408 1469 1.947678 GCAGTTCCTGGAGACACATGG 60.948 57.143 0.00 0.00 35.60 3.66
1469 1541 0.799534 CGTCGGTAATGTCGTCCACC 60.800 60.000 0.00 0.00 0.00 4.61
1482 1554 2.094659 CAAGATTCGCAGCGTCGGT 61.095 57.895 15.93 0.00 0.00 4.69
1721 1797 1.015109 CTGAGCTTGCAGCATTCGAT 58.985 50.000 0.00 0.00 45.56 3.59
1793 1869 1.227527 CTGCACGAGTGTCACCCAA 60.228 57.895 0.00 0.00 0.00 4.12
1805 1881 2.407361 CGAGTGTTAGTTAACCTGCACG 59.593 50.000 0.88 0.00 36.28 5.34
1816 1892 3.890147 AGAAGTGAGAACCGAGTGTTAGT 59.110 43.478 0.00 0.00 37.29 2.24
1817 1893 4.506886 AGAAGTGAGAACCGAGTGTTAG 57.493 45.455 0.00 0.00 37.29 2.34
1818 1894 4.500887 CCAAGAAGTGAGAACCGAGTGTTA 60.501 45.833 0.00 0.00 37.29 2.41
1819 1895 3.458189 CAAGAAGTGAGAACCGAGTGTT 58.542 45.455 0.00 0.00 40.81 3.32
1820 1896 2.224066 CCAAGAAGTGAGAACCGAGTGT 60.224 50.000 0.00 0.00 0.00 3.55
1821 1897 2.408050 CCAAGAAGTGAGAACCGAGTG 58.592 52.381 0.00 0.00 0.00 3.51
1822 1898 1.344763 CCCAAGAAGTGAGAACCGAGT 59.655 52.381 0.00 0.00 0.00 4.18
1823 1899 1.338200 CCCCAAGAAGTGAGAACCGAG 60.338 57.143 0.00 0.00 0.00 4.63
1825 1901 0.396811 ACCCCAAGAAGTGAGAACCG 59.603 55.000 0.00 0.00 0.00 4.44
1827 1903 3.142174 CAAGACCCCAAGAAGTGAGAAC 58.858 50.000 0.00 0.00 0.00 3.01
1828 1904 3.045634 TCAAGACCCCAAGAAGTGAGAA 58.954 45.455 0.00 0.00 0.00 2.87
1829 1905 2.689658 TCAAGACCCCAAGAAGTGAGA 58.310 47.619 0.00 0.00 0.00 3.27
1830 1906 3.710209 ATCAAGACCCCAAGAAGTGAG 57.290 47.619 0.00 0.00 0.00 3.51
1831 1907 5.488919 AGAATATCAAGACCCCAAGAAGTGA 59.511 40.000 0.00 0.00 0.00 3.41
1840 2019 4.816925 GCACAAGTAGAATATCAAGACCCC 59.183 45.833 0.00 0.00 0.00 4.95
1872 2051 9.978044 CTTTTCACTCTCAGATCATCATGTATA 57.022 33.333 0.00 0.00 0.00 1.47
1873 2052 8.484575 ACTTTTCACTCTCAGATCATCATGTAT 58.515 33.333 0.00 0.00 0.00 2.29
1874 2053 7.845037 ACTTTTCACTCTCAGATCATCATGTA 58.155 34.615 0.00 0.00 0.00 2.29
1875 2054 6.709281 ACTTTTCACTCTCAGATCATCATGT 58.291 36.000 0.00 0.00 0.00 3.21
1876 2055 6.258287 GGACTTTTCACTCTCAGATCATCATG 59.742 42.308 0.00 0.00 0.00 3.07
1877 2056 6.070366 TGGACTTTTCACTCTCAGATCATCAT 60.070 38.462 0.00 0.00 0.00 2.45
1878 2057 5.246883 TGGACTTTTCACTCTCAGATCATCA 59.753 40.000 0.00 0.00 0.00 3.07
1879 2058 5.728471 TGGACTTTTCACTCTCAGATCATC 58.272 41.667 0.00 0.00 0.00 2.92
1880 2059 5.752036 TGGACTTTTCACTCTCAGATCAT 57.248 39.130 0.00 0.00 0.00 2.45
1881 2060 5.752036 ATGGACTTTTCACTCTCAGATCA 57.248 39.130 0.00 0.00 0.00 2.92
1882 2061 5.936956 ACAATGGACTTTTCACTCTCAGATC 59.063 40.000 0.00 0.00 0.00 2.75
1883 2062 5.874093 ACAATGGACTTTTCACTCTCAGAT 58.126 37.500 0.00 0.00 0.00 2.90
1891 2070 6.589907 ACAAAACAGAACAATGGACTTTTCAC 59.410 34.615 0.00 0.00 0.00 3.18
1895 2074 4.869861 GCACAAAACAGAACAATGGACTTT 59.130 37.500 0.00 0.00 0.00 2.66
1906 2085 3.698539 TCACATGAAGGCACAAAACAGAA 59.301 39.130 0.00 0.00 0.00 3.02
1907 2086 3.066621 GTCACATGAAGGCACAAAACAGA 59.933 43.478 0.00 0.00 0.00 3.41
1908 2087 3.374745 GTCACATGAAGGCACAAAACAG 58.625 45.455 0.00 0.00 0.00 3.16
1910 2089 2.032799 TCGTCACATGAAGGCACAAAAC 59.967 45.455 0.00 0.00 0.00 2.43
1911 2090 2.293170 TCGTCACATGAAGGCACAAAA 58.707 42.857 0.00 0.00 0.00 2.44
1912 2091 1.960417 TCGTCACATGAAGGCACAAA 58.040 45.000 0.00 0.00 0.00 2.83
1915 2094 0.163788 CGTTCGTCACATGAAGGCAC 59.836 55.000 0.00 0.00 0.00 5.01
1920 2099 1.125930 CGCATTCGTTCGTCACATGAA 59.874 47.619 0.00 0.00 0.00 2.57
1925 2107 1.609932 TACTCGCATTCGTTCGTCAC 58.390 50.000 0.00 0.00 36.96 3.67
1928 2110 2.451132 CAGATACTCGCATTCGTTCGT 58.549 47.619 0.00 0.00 36.96 3.85
1965 2147 6.309494 CCAAAATCAGTGTATTTGCAGACATG 59.691 38.462 14.11 0.00 33.72 3.21
1966 2148 6.015180 ACCAAAATCAGTGTATTTGCAGACAT 60.015 34.615 14.11 0.00 33.72 3.06
1967 2149 5.301551 ACCAAAATCAGTGTATTTGCAGACA 59.698 36.000 14.11 0.00 33.72 3.41
1968 2150 5.772521 ACCAAAATCAGTGTATTTGCAGAC 58.227 37.500 14.11 0.00 33.72 3.51
1969 2151 6.215121 CAACCAAAATCAGTGTATTTGCAGA 58.785 36.000 14.11 0.00 33.72 4.26
1970 2152 5.406175 CCAACCAAAATCAGTGTATTTGCAG 59.594 40.000 14.11 7.49 33.72 4.41
1971 2153 5.295950 CCAACCAAAATCAGTGTATTTGCA 58.704 37.500 14.11 0.00 33.72 4.08
1972 2154 4.152223 GCCAACCAAAATCAGTGTATTTGC 59.848 41.667 14.11 4.88 33.72 3.68
1973 2155 5.295950 TGCCAACCAAAATCAGTGTATTTG 58.704 37.500 13.14 13.14 34.60 2.32
1974 2156 5.304101 TCTGCCAACCAAAATCAGTGTATTT 59.696 36.000 0.00 0.00 0.00 1.40
1975 2157 4.832266 TCTGCCAACCAAAATCAGTGTATT 59.168 37.500 0.00 0.00 0.00 1.89
1976 2158 4.406456 TCTGCCAACCAAAATCAGTGTAT 58.594 39.130 0.00 0.00 0.00 2.29
1977 2159 3.826524 TCTGCCAACCAAAATCAGTGTA 58.173 40.909 0.00 0.00 0.00 2.90
1978 2160 2.665165 TCTGCCAACCAAAATCAGTGT 58.335 42.857 0.00 0.00 0.00 3.55
1979 2161 3.947910 ATCTGCCAACCAAAATCAGTG 57.052 42.857 0.00 0.00 0.00 3.66
1980 2162 4.666512 AGTATCTGCCAACCAAAATCAGT 58.333 39.130 0.00 0.00 0.00 3.41
1981 2163 5.183713 TCAAGTATCTGCCAACCAAAATCAG 59.816 40.000 0.00 0.00 0.00 2.90
1982 2164 5.076182 TCAAGTATCTGCCAACCAAAATCA 58.924 37.500 0.00 0.00 0.00 2.57
1983 2165 5.643379 TCAAGTATCTGCCAACCAAAATC 57.357 39.130 0.00 0.00 0.00 2.17
1984 2166 6.418057 TTTCAAGTATCTGCCAACCAAAAT 57.582 33.333 0.00 0.00 0.00 1.82
1985 2167 5.860941 TTTCAAGTATCTGCCAACCAAAA 57.139 34.783 0.00 0.00 0.00 2.44
1986 2168 5.127845 TGTTTTCAAGTATCTGCCAACCAAA 59.872 36.000 0.00 0.00 0.00 3.28
1987 2169 4.646945 TGTTTTCAAGTATCTGCCAACCAA 59.353 37.500 0.00 0.00 0.00 3.67
1988 2170 4.211125 TGTTTTCAAGTATCTGCCAACCA 58.789 39.130 0.00 0.00 0.00 3.67
1989 2171 4.846779 TGTTTTCAAGTATCTGCCAACC 57.153 40.909 0.00 0.00 0.00 3.77
1990 2172 7.538678 CAGTAATGTTTTCAAGTATCTGCCAAC 59.461 37.037 0.00 0.00 0.00 3.77
1991 2173 7.230510 ACAGTAATGTTTTCAAGTATCTGCCAA 59.769 33.333 0.00 0.00 0.00 4.52
1992 2174 6.714810 ACAGTAATGTTTTCAAGTATCTGCCA 59.285 34.615 0.00 0.00 0.00 4.92
1993 2175 7.145932 ACAGTAATGTTTTCAAGTATCTGCC 57.854 36.000 0.00 0.00 0.00 4.85
2009 2191 8.338259 GTTTCCTGCAGACATATAACAGTAATG 58.662 37.037 17.39 0.00 0.00 1.90
2017 2199 6.811954 TCATACGTTTCCTGCAGACATATAA 58.188 36.000 17.39 0.00 0.00 0.98
2039 2221 7.774157 AGGTCATCGATAACTTTAGTAGACTCA 59.226 37.037 0.00 0.00 0.00 3.41
2045 2227 8.070034 TCCAAAGGTCATCGATAACTTTAGTA 57.930 34.615 16.09 6.69 30.87 1.82
2048 2230 7.561251 TGATCCAAAGGTCATCGATAACTTTA 58.439 34.615 16.09 7.01 30.87 1.85
2251 2433 5.710513 TGATAATGATATTTGTGGCCTGC 57.289 39.130 3.32 0.00 0.00 4.85
2281 2463 0.178964 CCCCAGTTCCAAAAGCCAGA 60.179 55.000 0.00 0.00 0.00 3.86
2314 2496 6.907206 TTCAGAAAAAGAAGGCACAATTTG 57.093 33.333 0.00 0.00 0.00 2.32
2366 2548 1.212935 GGTGCCTGTTCCATAGTCCAT 59.787 52.381 0.00 0.00 0.00 3.41
2474 2656 3.800506 GCATGAAACAAGGCATATTGCTC 59.199 43.478 0.00 0.00 44.28 4.26
2544 2726 3.488363 AGGGTCGATGTCTATACCAGTC 58.512 50.000 0.00 0.00 33.46 3.51
2727 2912 0.109532 TGTCATGCGTCCCCTTTGAA 59.890 50.000 0.00 0.00 0.00 2.69
2740 2925 3.124560 TGTTTGCAGCAACAATGTCATG 58.875 40.909 7.54 0.00 0.00 3.07
2760 2945 1.098050 GCAAGGGGTTCAGCAGTATG 58.902 55.000 0.00 0.00 40.87 2.39
2832 3017 3.063997 GCTCACACAATATCCCTGAAACG 59.936 47.826 0.00 0.00 0.00 3.60
2903 3088 5.108385 AGCATCGTAACCAAGAAACAAAG 57.892 39.130 0.00 0.00 0.00 2.77
3007 3192 8.105197 CCATCCATCCATTTCAGATACAGATAA 58.895 37.037 0.00 0.00 0.00 1.75
3088 3273 7.882791 TCAATCTGCCTTTACAATGTAAGAAGA 59.117 33.333 5.94 5.85 0.00 2.87
3089 3274 7.965107 GTCAATCTGCCTTTACAATGTAAGAAG 59.035 37.037 5.94 2.32 0.00 2.85
3090 3275 7.094377 GGTCAATCTGCCTTTACAATGTAAGAA 60.094 37.037 5.94 0.00 0.00 2.52
3206 3392 7.821595 TGAACAGTATAGTTTGACAATACCG 57.178 36.000 0.00 0.00 0.00 4.02
3218 3404 8.028938 GGCATTGAAAACAATGAACAGTATAGT 58.971 33.333 21.74 0.00 43.26 2.12
3222 3408 5.510520 GGGGCATTGAAAACAATGAACAGTA 60.511 40.000 21.74 0.00 43.26 2.74
3249 3435 0.537188 AGTTAGGCATCACACCTCCG 59.463 55.000 0.00 0.00 38.81 4.63
3255 3441 0.325933 AGCAGCAGTTAGGCATCACA 59.674 50.000 0.00 0.00 35.83 3.58
3305 3492 0.391228 TTCAGTGCCGTAACTGCAGA 59.609 50.000 23.35 0.00 45.93 4.26
3347 3534 2.128035 CACGTCCTCTTATCATTCGCC 58.872 52.381 0.00 0.00 0.00 5.54
3351 3538 5.408604 GTGAACAACACGTCCTCTTATCATT 59.591 40.000 0.00 0.00 39.78 2.57
3441 3628 8.550376 ACGAAACAAACGTTATACAGTGTTATT 58.450 29.630 12.68 0.92 41.18 1.40
3442 3629 8.005466 CACGAAACAAACGTTATACAGTGTTAT 58.995 33.333 12.68 5.40 42.07 1.89
3443 3630 7.336232 CACGAAACAAACGTTATACAGTGTTA 58.664 34.615 12.68 0.00 42.07 2.41
3582 3770 9.558648 CATCGACATGTTTTCTGATTCATTTAA 57.441 29.630 0.00 0.00 0.00 1.52
3616 3804 3.806316 TTTTTAGCGTCTGCAGTTAGC 57.194 42.857 14.67 16.81 46.23 3.09
3719 3907 6.043411 GTGGACATATCTTCAGGAAGTGTAC 58.957 44.000 8.75 7.52 39.38 2.90
3762 3950 4.324267 AGAAGGGTGTTACAATAGTGTGC 58.676 43.478 5.98 0.00 38.82 4.57
3766 3954 6.499350 TCCAAGTAGAAGGGTGTTACAATAGT 59.501 38.462 0.00 0.00 0.00 2.12
3831 4019 2.222027 CGCTAATGAATGAGTTCCCCC 58.778 52.381 0.00 0.00 33.26 5.40
3832 4020 2.222027 CCGCTAATGAATGAGTTCCCC 58.778 52.381 0.00 0.00 33.26 4.81
3833 4021 1.604278 GCCGCTAATGAATGAGTTCCC 59.396 52.381 0.00 0.00 33.26 3.97
3834 4022 2.288666 TGCCGCTAATGAATGAGTTCC 58.711 47.619 0.00 0.00 33.26 3.62
3835 4023 2.289002 CCTGCCGCTAATGAATGAGTTC 59.711 50.000 0.00 0.00 34.85 3.01
3879 4067 3.084039 CAAGGCCTTCAAAGCATACTCA 58.916 45.455 17.29 0.00 0.00 3.41
4021 4209 6.071984 ACCCTCAATACATAGGAGTACAGAG 58.928 44.000 0.00 0.00 34.58 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.