Multiple sequence alignment - TraesCS1D01G315500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G315500 chr1D 100.000 3107 0 0 1 3107 410603605 410600499 0.000000e+00 5738
1 TraesCS1D01G315500 chr1D 96.220 291 11 0 2739 3029 377577776 377577486 7.800000e-131 477
2 TraesCS1D01G315500 chr1D 89.320 103 7 1 1896 1994 5532797 5532695 3.250000e-25 126
3 TraesCS1D01G315500 chr1A 93.955 2647 85 23 1 2608 506856623 506854013 0.000000e+00 3932
4 TraesCS1D01G315500 chr1A 84.395 801 89 15 1133 1899 7196262 7195464 0.000000e+00 754
5 TraesCS1D01G315500 chr1A 90.476 147 9 4 2595 2739 506849360 506849217 4.090000e-44 189
6 TraesCS1D01G315500 chr1B 94.600 2148 69 21 26 2132 553452931 553450790 0.000000e+00 3280
7 TraesCS1D01G315500 chr1B 92.164 536 21 8 2042 2577 553450791 553450277 0.000000e+00 737
8 TraesCS1D01G315500 chr1B 92.771 166 12 0 2574 2739 553450030 553449865 1.110000e-59 241
9 TraesCS1D01G315500 chr1B 95.000 80 4 0 3027 3106 553449862 553449783 3.250000e-25 126
10 TraesCS1D01G315500 chr4A 80.639 1002 191 2 999 1997 111166404 111167405 0.000000e+00 773
11 TraesCS1D01G315500 chr4D 80.539 1002 192 2 999 1997 353698941 353697940 0.000000e+00 767
12 TraesCS1D01G315500 chr4B 80.240 1002 195 2 999 1997 437164071 437163070 0.000000e+00 750
13 TraesCS1D01G315500 chr2A 96.246 293 11 0 2737 3029 689530429 689530137 6.030000e-132 481
14 TraesCS1D01G315500 chr7D 95.890 292 12 0 2738 3029 207910648 207910939 1.010000e-129 473
15 TraesCS1D01G315500 chr6D 95.608 296 12 1 2735 3029 148775027 148774732 1.010000e-129 473
16 TraesCS1D01G315500 chr7B 95.578 294 13 0 2736 3029 735824704 735824411 3.630000e-129 472
17 TraesCS1D01G315500 chr2D 95.578 294 13 0 2736 3029 127370181 127369888 3.630000e-129 472
18 TraesCS1D01G315500 chr2D 91.463 328 24 4 2705 3029 486449246 486449572 6.110000e-122 448
19 TraesCS1D01G315500 chr6B 95.862 290 12 0 2740 3029 272825818 272826107 1.300000e-128 470
20 TraesCS1D01G315500 chr5D 94.966 298 13 2 2739 3036 371008811 371008516 1.690000e-127 466


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G315500 chr1D 410600499 410603605 3106 True 5738 5738 100.00000 1 3107 1 chr1D.!!$R3 3106
1 TraesCS1D01G315500 chr1A 506854013 506856623 2610 True 3932 3932 93.95500 1 2608 1 chr1A.!!$R3 2607
2 TraesCS1D01G315500 chr1A 7195464 7196262 798 True 754 754 84.39500 1133 1899 1 chr1A.!!$R1 766
3 TraesCS1D01G315500 chr1B 553449783 553452931 3148 True 1096 3280 93.63375 26 3106 4 chr1B.!!$R1 3080
4 TraesCS1D01G315500 chr4A 111166404 111167405 1001 False 773 773 80.63900 999 1997 1 chr4A.!!$F1 998
5 TraesCS1D01G315500 chr4D 353697940 353698941 1001 True 767 767 80.53900 999 1997 1 chr4D.!!$R1 998
6 TraesCS1D01G315500 chr4B 437163070 437164071 1001 True 750 750 80.24000 999 1997 1 chr4B.!!$R1 998

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.332632 CCACCACCATCACCAGGATT 59.667 55.0 0.00 0.0 32.57 3.01 F
535 553 0.613260 AGAGCGCTGGATGTTGGTAA 59.387 50.0 18.48 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2092 0.601558 ACGTCCAGTTACGATGCTGT 59.398 50.000 3.1 0.0 45.68 4.40 R
2301 2486 2.025131 TGCCTCCATTGATTCATCCACA 60.025 45.455 0.0 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.420272 ACCTACCCTACCACCACCAT 59.580 55.000 0.00 0.00 0.00 3.55
57 58 0.332632 CCACCACCATCACCAGGATT 59.667 55.000 0.00 0.00 32.57 3.01
426 436 3.514417 GCCTCCGGCTTCATTTCC 58.486 61.111 0.00 0.00 46.69 3.13
515 533 8.353423 AGTCAAAATCAATGGCAAATAGTAGT 57.647 30.769 0.00 0.00 0.00 2.73
517 535 9.722056 GTCAAAATCAATGGCAAATAGTAGTAG 57.278 33.333 0.00 0.00 0.00 2.57
518 536 9.679661 TCAAAATCAATGGCAAATAGTAGTAGA 57.320 29.630 0.00 0.00 0.00 2.59
519 537 9.941664 CAAAATCAATGGCAAATAGTAGTAGAG 57.058 33.333 0.00 0.00 0.00 2.43
535 553 0.613260 AGAGCGCTGGATGTTGGTAA 59.387 50.000 18.48 0.00 0.00 2.85
609 641 2.762459 AATCCCCTCGCCGTAGCA 60.762 61.111 0.00 0.00 39.83 3.49
610 642 2.140792 AATCCCCTCGCCGTAGCAT 61.141 57.895 0.00 0.00 39.83 3.79
611 643 1.696097 AATCCCCTCGCCGTAGCATT 61.696 55.000 0.00 0.00 39.83 3.56
612 644 1.696097 ATCCCCTCGCCGTAGCATTT 61.696 55.000 0.00 0.00 39.83 2.32
613 645 1.451387 CCCCTCGCCGTAGCATTTT 60.451 57.895 0.00 0.00 39.83 1.82
615 647 0.742990 CCCTCGCCGTAGCATTTTCA 60.743 55.000 0.00 0.00 39.83 2.69
695 746 5.738783 GCCTAGACCTGCATTTTCAAACAAA 60.739 40.000 0.00 0.00 0.00 2.83
706 757 6.511605 GCATTTTCAAACAAATGAGACCAACC 60.512 38.462 9.77 0.00 43.99 3.77
821 872 6.316890 GGTAGGGAATAGATCGAGCTACTTAG 59.683 46.154 13.47 0.00 0.00 2.18
946 1000 1.190984 GCATCATCGTACATGCGAGTG 59.809 52.381 0.00 0.00 44.43 3.51
1092 1146 1.134491 CGTCTGGTCAGGAATTACCCC 60.134 57.143 0.00 0.00 40.05 4.95
1417 1493 5.312120 TGAAGTCTACGGAGAAACTGATC 57.688 43.478 0.00 0.00 31.96 2.92
1718 1806 4.586001 AGCCTTTGATGTTGTTCTTCACAT 59.414 37.500 0.00 0.00 34.43 3.21
2031 2122 1.589993 CTGGACGTATGCTGCCTCG 60.590 63.158 0.00 1.89 0.00 4.63
2112 2292 5.348451 GTGCAGGGCAATGTTATAAACTTTG 59.652 40.000 11.83 11.83 44.67 2.77
2166 2346 6.435428 ACAACACGATTCAAACCTCAAATAC 58.565 36.000 0.00 0.00 0.00 1.89
2196 2376 3.595190 TCCTGAGCTACTACTGCCATA 57.405 47.619 0.00 0.00 0.00 2.74
2197 2377 3.223435 TCCTGAGCTACTACTGCCATAC 58.777 50.000 0.00 0.00 0.00 2.39
2200 2380 2.362397 TGAGCTACTACTGCCATACTGC 59.638 50.000 0.00 0.00 0.00 4.40
2202 2382 1.412710 GCTACTACTGCCATACTGCCA 59.587 52.381 0.00 0.00 0.00 4.92
2203 2383 2.037772 GCTACTACTGCCATACTGCCAT 59.962 50.000 0.00 0.00 0.00 4.40
2204 2384 3.495100 GCTACTACTGCCATACTGCCATT 60.495 47.826 0.00 0.00 0.00 3.16
2205 2385 2.923121 ACTACTGCCATACTGCCATTG 58.077 47.619 0.00 0.00 0.00 2.82
2206 2386 2.239654 ACTACTGCCATACTGCCATTGT 59.760 45.455 0.00 0.00 0.00 2.71
2207 2387 2.220653 ACTGCCATACTGCCATTGTT 57.779 45.000 0.00 0.00 0.00 2.83
2208 2388 2.528564 ACTGCCATACTGCCATTGTTT 58.471 42.857 0.00 0.00 0.00 2.83
2209 2389 2.493278 ACTGCCATACTGCCATTGTTTC 59.507 45.455 0.00 0.00 0.00 2.78
2210 2390 2.756760 CTGCCATACTGCCATTGTTTCT 59.243 45.455 0.00 0.00 0.00 2.52
2211 2391 3.164268 TGCCATACTGCCATTGTTTCTT 58.836 40.909 0.00 0.00 0.00 2.52
2212 2392 3.577848 TGCCATACTGCCATTGTTTCTTT 59.422 39.130 0.00 0.00 0.00 2.52
2213 2393 3.928375 GCCATACTGCCATTGTTTCTTTG 59.072 43.478 0.00 0.00 0.00 2.77
2214 2394 4.321899 GCCATACTGCCATTGTTTCTTTGA 60.322 41.667 0.00 0.00 0.00 2.69
2250 2435 0.592637 CGAGTGCACAGATTTTGCCA 59.407 50.000 21.04 0.00 39.39 4.92
2295 2480 1.895131 GGCATGCCTTTCTTTTCCTGA 59.105 47.619 29.98 0.00 0.00 3.86
2296 2481 2.498885 GGCATGCCTTTCTTTTCCTGAT 59.501 45.455 29.98 0.00 0.00 2.90
2297 2482 3.518590 GCATGCCTTTCTTTTCCTGATG 58.481 45.455 6.36 0.00 0.00 3.07
2298 2483 3.194116 GCATGCCTTTCTTTTCCTGATGA 59.806 43.478 6.36 0.00 0.00 2.92
2299 2484 4.322198 GCATGCCTTTCTTTTCCTGATGAA 60.322 41.667 6.36 0.00 0.00 2.57
2300 2485 5.626116 GCATGCCTTTCTTTTCCTGATGAAT 60.626 40.000 6.36 0.00 31.67 2.57
2301 2486 6.403878 CATGCCTTTCTTTTCCTGATGAATT 58.596 36.000 0.00 0.00 31.67 2.17
2302 2487 5.786311 TGCCTTTCTTTTCCTGATGAATTG 58.214 37.500 0.00 0.00 31.67 2.32
2303 2488 5.305128 TGCCTTTCTTTTCCTGATGAATTGT 59.695 36.000 0.00 0.00 31.67 2.71
2304 2489 5.636543 GCCTTTCTTTTCCTGATGAATTGTG 59.363 40.000 0.00 0.00 31.67 3.33
2305 2490 6.161381 CCTTTCTTTTCCTGATGAATTGTGG 58.839 40.000 0.00 0.00 31.67 4.17
2312 2497 6.704289 TTCCTGATGAATTGTGGATGAATC 57.296 37.500 0.00 0.00 0.00 2.52
2328 2513 4.842531 TGAATCAATGGAGGCAGTCTAA 57.157 40.909 0.00 0.00 0.00 2.10
2337 2522 3.118261 TGGAGGCAGTCTAATGGTGATTC 60.118 47.826 0.00 0.00 0.00 2.52
2392 2577 9.990360 TTACATGGATGAATTACGTATGTATGT 57.010 29.630 0.00 0.00 31.86 2.29
2416 2601 4.624604 GCAATGCCTTTTTCCATCTCCAAT 60.625 41.667 0.00 0.00 0.00 3.16
2417 2602 5.493809 CAATGCCTTTTTCCATCTCCAATT 58.506 37.500 0.00 0.00 0.00 2.32
2561 2754 3.804873 GGGAGCTTCTTAATCTAGTTGCG 59.195 47.826 0.00 0.00 0.00 4.85
2611 3054 9.851686 AATACTTTCAGGTATAGCATGAATTCA 57.148 29.630 11.26 11.26 45.61 2.57
2612 3055 9.851686 ATACTTTCAGGTATAGCATGAATTCAA 57.148 29.630 13.09 0.00 45.61 2.69
2656 3099 1.754745 GGCATCCCCTATCTCGCAA 59.245 57.895 0.00 0.00 0.00 4.85
2663 3106 4.122337 TCCCCTATCTCGCAATACCTTA 57.878 45.455 0.00 0.00 0.00 2.69
2664 3107 4.087182 TCCCCTATCTCGCAATACCTTAG 58.913 47.826 0.00 0.00 0.00 2.18
2724 3167 1.889545 TGTGATGCGTTGGTCAATGA 58.110 45.000 7.06 0.00 0.00 2.57
2739 3182 7.921786 TGGTCAATGAAACCATTAGTCTAAG 57.078 36.000 0.00 0.00 41.84 2.18
2740 3183 6.884295 TGGTCAATGAAACCATTAGTCTAAGG 59.116 38.462 0.00 0.00 41.84 2.69
2741 3184 6.183360 GGTCAATGAAACCATTAGTCTAAGGC 60.183 42.308 0.00 0.00 36.75 4.35
2742 3185 5.885912 TCAATGAAACCATTAGTCTAAGGCC 59.114 40.000 0.00 0.00 33.27 5.19
2743 3186 4.230745 TGAAACCATTAGTCTAAGGCCC 57.769 45.455 0.00 0.00 0.00 5.80
2744 3187 3.850173 TGAAACCATTAGTCTAAGGCCCT 59.150 43.478 0.00 0.00 0.00 5.19
2745 3188 3.933861 AACCATTAGTCTAAGGCCCTG 57.066 47.619 0.00 0.00 0.00 4.45
2746 3189 2.846950 ACCATTAGTCTAAGGCCCTGT 58.153 47.619 0.00 0.00 0.00 4.00
2747 3190 3.190439 ACCATTAGTCTAAGGCCCTGTT 58.810 45.455 0.00 0.00 0.00 3.16
2748 3191 3.591977 ACCATTAGTCTAAGGCCCTGTTT 59.408 43.478 0.00 0.00 0.00 2.83
2749 3192 3.947834 CCATTAGTCTAAGGCCCTGTTTG 59.052 47.826 0.00 0.00 0.00 2.93
2750 3193 3.713826 TTAGTCTAAGGCCCTGTTTGG 57.286 47.619 0.00 0.00 0.00 3.28
2751 3194 1.446016 AGTCTAAGGCCCTGTTTGGT 58.554 50.000 0.00 0.00 0.00 3.67
2752 3195 1.780919 AGTCTAAGGCCCTGTTTGGTT 59.219 47.619 0.00 0.00 0.00 3.67
2753 3196 2.160205 GTCTAAGGCCCTGTTTGGTTC 58.840 52.381 0.00 0.00 0.00 3.62
2754 3197 1.777878 TCTAAGGCCCTGTTTGGTTCA 59.222 47.619 0.00 0.00 0.00 3.18
2755 3198 2.162681 CTAAGGCCCTGTTTGGTTCAG 58.837 52.381 0.00 0.00 0.00 3.02
2756 3199 1.115326 AAGGCCCTGTTTGGTTCAGC 61.115 55.000 0.00 0.00 0.00 4.26
2757 3200 1.531602 GGCCCTGTTTGGTTCAGCT 60.532 57.895 0.00 0.00 0.00 4.24
2758 3201 1.115326 GGCCCTGTTTGGTTCAGCTT 61.115 55.000 0.00 0.00 0.00 3.74
2759 3202 0.752658 GCCCTGTTTGGTTCAGCTTT 59.247 50.000 0.00 0.00 0.00 3.51
2760 3203 1.138859 GCCCTGTTTGGTTCAGCTTTT 59.861 47.619 0.00 0.00 0.00 2.27
2761 3204 2.364002 GCCCTGTTTGGTTCAGCTTTTA 59.636 45.455 0.00 0.00 0.00 1.52
2762 3205 3.006859 GCCCTGTTTGGTTCAGCTTTTAT 59.993 43.478 0.00 0.00 0.00 1.40
2763 3206 4.809673 CCCTGTTTGGTTCAGCTTTTATC 58.190 43.478 0.00 0.00 0.00 1.75
2764 3207 4.475944 CCTGTTTGGTTCAGCTTTTATCG 58.524 43.478 0.00 0.00 0.00 2.92
2765 3208 4.215399 CCTGTTTGGTTCAGCTTTTATCGA 59.785 41.667 0.00 0.00 0.00 3.59
2766 3209 5.103290 TGTTTGGTTCAGCTTTTATCGAC 57.897 39.130 0.00 0.00 0.00 4.20
2767 3210 4.148891 GTTTGGTTCAGCTTTTATCGACG 58.851 43.478 0.00 0.00 0.00 5.12
2768 3211 2.343101 TGGTTCAGCTTTTATCGACGG 58.657 47.619 0.00 0.00 0.00 4.79
2769 3212 2.028839 TGGTTCAGCTTTTATCGACGGA 60.029 45.455 0.00 0.00 0.00 4.69
2770 3213 3.195661 GGTTCAGCTTTTATCGACGGAT 58.804 45.455 0.00 0.00 36.65 4.18
2771 3214 3.621715 GGTTCAGCTTTTATCGACGGATT 59.378 43.478 0.00 0.00 34.00 3.01
2772 3215 4.260253 GGTTCAGCTTTTATCGACGGATTC 60.260 45.833 0.00 0.00 34.00 2.52
2773 3216 3.454375 TCAGCTTTTATCGACGGATTCC 58.546 45.455 0.00 0.00 34.00 3.01
2799 3242 2.845019 CGCAGCAGAATCTGAACCA 58.155 52.632 15.38 0.00 36.19 3.67
2800 3243 1.159285 CGCAGCAGAATCTGAACCAA 58.841 50.000 15.38 0.00 36.19 3.67
2801 3244 1.536766 CGCAGCAGAATCTGAACCAAA 59.463 47.619 15.38 0.00 36.19 3.28
2802 3245 2.413765 CGCAGCAGAATCTGAACCAAAG 60.414 50.000 15.38 0.00 36.19 2.77
2803 3246 2.094854 GCAGCAGAATCTGAACCAAAGG 60.095 50.000 15.38 0.00 36.19 3.11
2804 3247 2.490903 CAGCAGAATCTGAACCAAAGGG 59.509 50.000 15.38 0.00 36.19 3.95
2805 3248 1.203287 GCAGAATCTGAACCAAAGGGC 59.797 52.381 15.38 0.00 33.00 5.19
2806 3249 1.470098 CAGAATCTGAACCAAAGGGCG 59.530 52.381 3.77 0.00 33.00 6.13
2807 3250 1.351017 AGAATCTGAACCAAAGGGCGA 59.649 47.619 0.00 0.00 37.90 5.54
2808 3251 2.159382 GAATCTGAACCAAAGGGCGAA 58.841 47.619 0.00 0.00 37.90 4.70
2809 3252 1.534729 ATCTGAACCAAAGGGCGAAC 58.465 50.000 0.00 0.00 37.90 3.95
2810 3253 0.536460 TCTGAACCAAAGGGCGAACC 60.536 55.000 0.00 0.00 37.90 3.62
2820 3263 3.502572 GGCGAACCCAGCAGAATC 58.497 61.111 0.00 0.00 36.08 2.52
2821 3264 2.115291 GGCGAACCCAGCAGAATCC 61.115 63.158 0.00 0.00 36.08 3.01
2822 3265 2.464459 GCGAACCCAGCAGAATCCG 61.464 63.158 0.00 0.00 34.19 4.18
2823 3266 1.218047 CGAACCCAGCAGAATCCGA 59.782 57.895 0.00 0.00 0.00 4.55
2824 3267 0.179073 CGAACCCAGCAGAATCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
2825 3268 1.743772 CGAACCCAGCAGAATCCGATT 60.744 52.381 0.00 0.00 0.00 3.34
2826 3269 1.943340 GAACCCAGCAGAATCCGATTC 59.057 52.381 12.51 12.51 39.56 2.52
2827 3270 0.181350 ACCCAGCAGAATCCGATTCC 59.819 55.000 16.09 3.83 40.13 3.01
2828 3271 0.181114 CCCAGCAGAATCCGATTCCA 59.819 55.000 16.09 0.00 40.13 3.53
2829 3272 1.590932 CCAGCAGAATCCGATTCCAG 58.409 55.000 16.09 11.03 40.13 3.86
2830 3273 1.139654 CCAGCAGAATCCGATTCCAGA 59.860 52.381 16.09 0.00 40.13 3.86
2831 3274 2.420547 CCAGCAGAATCCGATTCCAGAA 60.421 50.000 16.09 0.00 40.13 3.02
2832 3275 3.273434 CAGCAGAATCCGATTCCAGAAA 58.727 45.455 16.09 0.00 40.13 2.52
2833 3276 3.881688 CAGCAGAATCCGATTCCAGAAAT 59.118 43.478 16.09 0.00 40.13 2.17
2834 3277 4.024218 CAGCAGAATCCGATTCCAGAAATC 60.024 45.833 16.09 0.79 40.13 2.17
2835 3278 3.251972 GCAGAATCCGATTCCAGAAATCC 59.748 47.826 16.09 0.00 40.69 3.01
2836 3279 3.496130 CAGAATCCGATTCCAGAAATCCG 59.504 47.826 16.09 0.00 40.69 4.18
2837 3280 1.884235 ATCCGATTCCAGAAATCCGC 58.116 50.000 0.00 0.00 40.69 5.54
2838 3281 0.830648 TCCGATTCCAGAAATCCGCT 59.169 50.000 0.00 0.00 40.69 5.52
2839 3282 0.940126 CCGATTCCAGAAATCCGCTG 59.060 55.000 0.00 0.00 40.69 5.18
2840 3283 0.305922 CGATTCCAGAAATCCGCTGC 59.694 55.000 0.00 0.00 40.69 5.25
2841 3284 0.665298 GATTCCAGAAATCCGCTGCC 59.335 55.000 0.00 0.00 38.27 4.85
2842 3285 0.034186 ATTCCAGAAATCCGCTGCCA 60.034 50.000 0.00 0.00 32.06 4.92
2843 3286 0.251121 TTCCAGAAATCCGCTGCCAA 60.251 50.000 0.00 0.00 32.06 4.52
2844 3287 0.251121 TCCAGAAATCCGCTGCCAAA 60.251 50.000 0.00 0.00 32.06 3.28
2845 3288 0.602562 CCAGAAATCCGCTGCCAAAA 59.397 50.000 0.00 0.00 32.06 2.44
2846 3289 1.205417 CCAGAAATCCGCTGCCAAAAT 59.795 47.619 0.00 0.00 32.06 1.82
2847 3290 2.533266 CAGAAATCCGCTGCCAAAATC 58.467 47.619 0.00 0.00 0.00 2.17
2848 3291 2.165030 CAGAAATCCGCTGCCAAAATCT 59.835 45.455 0.00 0.00 0.00 2.40
2849 3292 2.165030 AGAAATCCGCTGCCAAAATCTG 59.835 45.455 0.00 0.00 0.00 2.90
2850 3293 1.838112 AATCCGCTGCCAAAATCTGA 58.162 45.000 0.00 0.00 0.00 3.27
2851 3294 1.838112 ATCCGCTGCCAAAATCTGAA 58.162 45.000 0.00 0.00 0.00 3.02
2852 3295 0.881118 TCCGCTGCCAAAATCTGAAC 59.119 50.000 0.00 0.00 0.00 3.18
2853 3296 0.109132 CCGCTGCCAAAATCTGAACC 60.109 55.000 0.00 0.00 0.00 3.62
2854 3297 0.597568 CGCTGCCAAAATCTGAACCA 59.402 50.000 0.00 0.00 0.00 3.67
2855 3298 1.000385 CGCTGCCAAAATCTGAACCAA 60.000 47.619 0.00 0.00 0.00 3.67
2856 3299 2.545532 CGCTGCCAAAATCTGAACCAAA 60.546 45.455 0.00 0.00 0.00 3.28
2857 3300 3.465871 GCTGCCAAAATCTGAACCAAAA 58.534 40.909 0.00 0.00 0.00 2.44
2858 3301 3.495753 GCTGCCAAAATCTGAACCAAAAG 59.504 43.478 0.00 0.00 0.00 2.27
2859 3302 3.465871 TGCCAAAATCTGAACCAAAAGC 58.534 40.909 0.00 0.00 0.00 3.51
2860 3303 2.476241 GCCAAAATCTGAACCAAAAGCG 59.524 45.455 0.00 0.00 0.00 4.68
2861 3304 3.059166 CCAAAATCTGAACCAAAAGCGG 58.941 45.455 0.00 0.00 0.00 5.52
2862 3305 3.243704 CCAAAATCTGAACCAAAAGCGGA 60.244 43.478 0.00 0.00 0.00 5.54
2863 3306 4.367450 CAAAATCTGAACCAAAAGCGGAA 58.633 39.130 0.00 0.00 0.00 4.30
2864 3307 3.923017 AATCTGAACCAAAAGCGGAAG 57.077 42.857 0.00 0.00 0.00 3.46
2876 3319 2.515523 CGGAAGCAGCCCAGGATG 60.516 66.667 0.00 0.00 34.24 3.51
2877 3320 2.679716 GGAAGCAGCCCAGGATGT 59.320 61.111 3.55 0.00 33.56 3.06
2878 3321 1.915228 GGAAGCAGCCCAGGATGTA 59.085 57.895 3.55 0.00 33.56 2.29
2879 3322 0.464554 GGAAGCAGCCCAGGATGTAC 60.465 60.000 3.55 0.00 33.56 2.90
2880 3323 0.543749 GAAGCAGCCCAGGATGTACT 59.456 55.000 3.55 0.00 33.56 2.73
2881 3324 0.995024 AAGCAGCCCAGGATGTACTT 59.005 50.000 3.55 0.00 33.56 2.24
2882 3325 0.995024 AGCAGCCCAGGATGTACTTT 59.005 50.000 3.55 0.00 33.56 2.66
2883 3326 1.355720 AGCAGCCCAGGATGTACTTTT 59.644 47.619 3.55 0.00 33.56 2.27
2884 3327 1.745653 GCAGCCCAGGATGTACTTTTC 59.254 52.381 3.55 0.00 33.56 2.29
2885 3328 2.879756 GCAGCCCAGGATGTACTTTTCA 60.880 50.000 3.55 0.00 33.56 2.69
2886 3329 3.420893 CAGCCCAGGATGTACTTTTCAA 58.579 45.455 0.00 0.00 0.00 2.69
2887 3330 3.826157 CAGCCCAGGATGTACTTTTCAAA 59.174 43.478 0.00 0.00 0.00 2.69
2888 3331 4.280677 CAGCCCAGGATGTACTTTTCAAAA 59.719 41.667 0.00 0.00 0.00 2.44
2889 3332 5.047092 CAGCCCAGGATGTACTTTTCAAAAT 60.047 40.000 0.00 0.00 0.00 1.82
2890 3333 5.185828 AGCCCAGGATGTACTTTTCAAAATC 59.814 40.000 0.00 0.00 0.00 2.17
2891 3334 5.185828 GCCCAGGATGTACTTTTCAAAATCT 59.814 40.000 0.00 0.00 0.00 2.40
2892 3335 6.624423 CCCAGGATGTACTTTTCAAAATCTG 58.376 40.000 0.00 0.00 0.00 2.90
2893 3336 6.434028 CCCAGGATGTACTTTTCAAAATCTGA 59.566 38.462 0.00 0.00 0.00 3.27
2894 3337 7.123247 CCCAGGATGTACTTTTCAAAATCTGAT 59.877 37.037 0.00 0.00 32.78 2.90
2895 3338 8.526147 CCAGGATGTACTTTTCAAAATCTGATT 58.474 33.333 0.00 0.00 32.78 2.57
2896 3339 9.565213 CAGGATGTACTTTTCAAAATCTGATTC 57.435 33.333 2.92 0.00 32.78 2.52
2897 3340 8.743714 AGGATGTACTTTTCAAAATCTGATTCC 58.256 33.333 2.92 0.00 32.78 3.01
2898 3341 7.698130 GGATGTACTTTTCAAAATCTGATTCCG 59.302 37.037 2.92 0.00 32.78 4.30
2899 3342 6.378582 TGTACTTTTCAAAATCTGATTCCGC 58.621 36.000 2.92 0.00 32.78 5.54
2900 3343 5.712152 ACTTTTCAAAATCTGATTCCGCT 57.288 34.783 2.92 0.00 32.78 5.52
2901 3344 5.464168 ACTTTTCAAAATCTGATTCCGCTG 58.536 37.500 2.92 0.27 32.78 5.18
2902 3345 3.492421 TTCAAAATCTGATTCCGCTGC 57.508 42.857 2.92 0.00 32.78 5.25
2903 3346 1.398041 TCAAAATCTGATTCCGCTGCG 59.602 47.619 16.34 16.34 0.00 5.18
2904 3347 5.267896 TTCAAAATCTGATTCCGCTGCGG 62.268 47.826 33.94 33.94 40.39 5.69
2913 3356 4.496927 CCGCTGCGGGCCAAAATC 62.497 66.667 32.37 0.00 44.15 2.17
2914 3357 3.443045 CGCTGCGGGCCAAAATCT 61.443 61.111 15.40 0.00 37.74 2.40
2915 3358 2.182537 GCTGCGGGCCAAAATCTG 59.817 61.111 4.39 0.00 34.27 2.90
2916 3359 2.342650 GCTGCGGGCCAAAATCTGA 61.343 57.895 4.39 0.00 34.27 3.27
2917 3360 1.876497 GCTGCGGGCCAAAATCTGAA 61.876 55.000 4.39 0.00 34.27 3.02
2918 3361 0.602562 CTGCGGGCCAAAATCTGAAA 59.397 50.000 4.39 0.00 0.00 2.69
2919 3362 1.000731 CTGCGGGCCAAAATCTGAAAA 59.999 47.619 4.39 0.00 0.00 2.29
2920 3363 1.414181 TGCGGGCCAAAATCTGAAAAA 59.586 42.857 4.39 0.00 0.00 1.94
2921 3364 2.068519 GCGGGCCAAAATCTGAAAAAG 58.931 47.619 4.39 0.00 0.00 2.27
2922 3365 2.547855 GCGGGCCAAAATCTGAAAAAGT 60.548 45.455 4.39 0.00 0.00 2.66
2923 3366 3.727726 CGGGCCAAAATCTGAAAAAGTT 58.272 40.909 4.39 0.00 0.00 2.66
2924 3367 3.494251 CGGGCCAAAATCTGAAAAAGTTG 59.506 43.478 4.39 0.00 0.00 3.16
2925 3368 4.450976 GGGCCAAAATCTGAAAAAGTTGT 58.549 39.130 4.39 0.00 0.00 3.32
2926 3369 5.606505 GGGCCAAAATCTGAAAAAGTTGTA 58.393 37.500 4.39 0.00 0.00 2.41
2927 3370 6.230472 GGGCCAAAATCTGAAAAAGTTGTAT 58.770 36.000 4.39 0.00 0.00 2.29
2928 3371 6.368791 GGGCCAAAATCTGAAAAAGTTGTATC 59.631 38.462 4.39 0.00 0.00 2.24
2929 3372 6.928492 GGCCAAAATCTGAAAAAGTTGTATCA 59.072 34.615 0.00 0.00 0.00 2.15
2930 3373 7.116805 GGCCAAAATCTGAAAAAGTTGTATCAG 59.883 37.037 0.00 6.51 40.46 2.90
2931 3374 7.359514 GCCAAAATCTGAAAAAGTTGTATCAGC 60.360 37.037 7.57 0.00 39.27 4.26
2932 3375 7.869429 CCAAAATCTGAAAAAGTTGTATCAGCT 59.131 33.333 7.57 0.00 39.27 4.24
2933 3376 8.697067 CAAAATCTGAAAAAGTTGTATCAGCTG 58.303 33.333 7.63 7.63 39.27 4.24
2934 3377 5.947228 TCTGAAAAAGTTGTATCAGCTGG 57.053 39.130 15.13 0.00 39.27 4.85
2935 3378 5.376625 TCTGAAAAAGTTGTATCAGCTGGT 58.623 37.500 15.13 9.93 39.27 4.00
2936 3379 5.827797 TCTGAAAAAGTTGTATCAGCTGGTT 59.172 36.000 15.13 4.51 39.27 3.67
2937 3380 6.321181 TCTGAAAAAGTTGTATCAGCTGGTTT 59.679 34.615 15.13 1.77 39.27 3.27
2938 3381 6.272318 TGAAAAAGTTGTATCAGCTGGTTTG 58.728 36.000 15.13 0.00 0.00 2.93
2939 3382 3.923017 AAGTTGTATCAGCTGGTTTGC 57.077 42.857 15.13 3.72 0.00 3.68
2940 3383 2.162681 AGTTGTATCAGCTGGTTTGCC 58.837 47.619 15.13 0.00 0.00 4.52
2941 3384 1.885887 GTTGTATCAGCTGGTTTGCCA 59.114 47.619 15.13 0.00 43.73 4.92
2942 3385 2.284754 TGTATCAGCTGGTTTGCCAA 57.715 45.000 15.13 0.00 45.51 4.52
2943 3386 2.591923 TGTATCAGCTGGTTTGCCAAA 58.408 42.857 15.13 0.00 45.51 3.28
2944 3387 3.164268 TGTATCAGCTGGTTTGCCAAAT 58.836 40.909 15.13 0.00 45.51 2.32
2945 3388 2.754946 ATCAGCTGGTTTGCCAAATG 57.245 45.000 15.13 0.00 45.51 2.32
2946 3389 1.702182 TCAGCTGGTTTGCCAAATGA 58.298 45.000 15.13 0.00 45.51 2.57
2947 3390 1.340889 TCAGCTGGTTTGCCAAATGAC 59.659 47.619 15.13 0.00 45.51 3.06
2948 3391 0.681175 AGCTGGTTTGCCAAATGACC 59.319 50.000 0.00 0.00 45.51 4.02
2949 3392 0.681175 GCTGGTTTGCCAAATGACCT 59.319 50.000 0.00 0.00 45.51 3.85
2950 3393 1.892474 GCTGGTTTGCCAAATGACCTA 59.108 47.619 0.00 0.00 45.51 3.08
2951 3394 2.352715 GCTGGTTTGCCAAATGACCTAC 60.353 50.000 0.00 0.00 45.51 3.18
2952 3395 2.890311 CTGGTTTGCCAAATGACCTACA 59.110 45.455 0.00 0.00 45.51 2.74
2953 3396 3.505386 TGGTTTGCCAAATGACCTACAT 58.495 40.909 0.00 0.00 42.83 2.29
2954 3397 3.509575 TGGTTTGCCAAATGACCTACATC 59.490 43.478 0.00 0.00 42.83 3.06
2955 3398 3.763897 GGTTTGCCAAATGACCTACATCT 59.236 43.478 0.00 0.00 34.76 2.90
2956 3399 4.220602 GGTTTGCCAAATGACCTACATCTT 59.779 41.667 0.00 0.00 34.76 2.40
2957 3400 5.279456 GGTTTGCCAAATGACCTACATCTTT 60.279 40.000 0.00 0.00 34.76 2.52
2958 3401 6.223120 GTTTGCCAAATGACCTACATCTTTT 58.777 36.000 0.00 0.00 38.38 2.27
2959 3402 6.418057 TTGCCAAATGACCTACATCTTTTT 57.582 33.333 0.00 0.00 38.38 1.94
2960 3403 6.024552 TGCCAAATGACCTACATCTTTTTC 57.975 37.500 0.00 0.00 38.38 2.29
2961 3404 5.538053 TGCCAAATGACCTACATCTTTTTCA 59.462 36.000 0.00 0.00 38.38 2.69
2962 3405 5.863935 GCCAAATGACCTACATCTTTTTCAC 59.136 40.000 0.00 0.00 38.38 3.18
2963 3406 6.516527 GCCAAATGACCTACATCTTTTTCACA 60.517 38.462 0.00 0.00 38.38 3.58
2964 3407 7.605449 CCAAATGACCTACATCTTTTTCACAT 58.395 34.615 0.00 0.00 38.38 3.21
2965 3408 7.756722 CCAAATGACCTACATCTTTTTCACATC 59.243 37.037 0.00 0.00 38.38 3.06
2966 3409 8.298854 CAAATGACCTACATCTTTTTCACATCA 58.701 33.333 0.00 0.00 38.38 3.07
2967 3410 7.621428 ATGACCTACATCTTTTTCACATCAG 57.379 36.000 0.00 0.00 33.46 2.90
2968 3411 6.768483 TGACCTACATCTTTTTCACATCAGA 58.232 36.000 0.00 0.00 0.00 3.27
2969 3412 7.397221 TGACCTACATCTTTTTCACATCAGAT 58.603 34.615 0.00 0.00 0.00 2.90
2970 3413 7.884877 TGACCTACATCTTTTTCACATCAGATT 59.115 33.333 0.00 0.00 0.00 2.40
2971 3414 8.641498 ACCTACATCTTTTTCACATCAGATTT 57.359 30.769 0.00 0.00 0.00 2.17
2972 3415 9.082313 ACCTACATCTTTTTCACATCAGATTTT 57.918 29.630 0.00 0.00 0.00 1.82
2973 3416 9.565213 CCTACATCTTTTTCACATCAGATTTTC 57.435 33.333 0.00 0.00 0.00 2.29
2974 3417 9.565213 CTACATCTTTTTCACATCAGATTTTCC 57.435 33.333 0.00 0.00 0.00 3.13
2975 3418 7.954835 ACATCTTTTTCACATCAGATTTTCCA 58.045 30.769 0.00 0.00 0.00 3.53
2976 3419 7.869429 ACATCTTTTTCACATCAGATTTTCCAC 59.131 33.333 0.00 0.00 0.00 4.02
2977 3420 7.345422 TCTTTTTCACATCAGATTTTCCACA 57.655 32.000 0.00 0.00 0.00 4.17
2978 3421 7.428020 TCTTTTTCACATCAGATTTTCCACAG 58.572 34.615 0.00 0.00 0.00 3.66
2979 3422 4.771590 TTCACATCAGATTTTCCACAGC 57.228 40.909 0.00 0.00 0.00 4.40
2980 3423 3.753815 TCACATCAGATTTTCCACAGCA 58.246 40.909 0.00 0.00 0.00 4.41
2981 3424 3.754850 TCACATCAGATTTTCCACAGCAG 59.245 43.478 0.00 0.00 0.00 4.24
2982 3425 3.754850 CACATCAGATTTTCCACAGCAGA 59.245 43.478 0.00 0.00 0.00 4.26
2983 3426 4.216902 CACATCAGATTTTCCACAGCAGAA 59.783 41.667 0.00 0.00 0.00 3.02
2984 3427 5.014858 ACATCAGATTTTCCACAGCAGAAT 58.985 37.500 0.00 0.00 0.00 2.40
2985 3428 5.479375 ACATCAGATTTTCCACAGCAGAATT 59.521 36.000 0.00 0.00 0.00 2.17
2986 3429 6.014840 ACATCAGATTTTCCACAGCAGAATTT 60.015 34.615 0.00 0.00 0.00 1.82
2987 3430 6.409524 TCAGATTTTCCACAGCAGAATTTT 57.590 33.333 0.00 0.00 0.00 1.82
2988 3431 6.449698 TCAGATTTTCCACAGCAGAATTTTC 58.550 36.000 0.00 0.00 0.00 2.29
2989 3432 6.040729 TCAGATTTTCCACAGCAGAATTTTCA 59.959 34.615 0.00 0.00 0.00 2.69
2990 3433 6.145048 CAGATTTTCCACAGCAGAATTTTCAC 59.855 38.462 0.00 0.00 0.00 3.18
2991 3434 4.998671 TTTCCACAGCAGAATTTTCACA 57.001 36.364 0.00 0.00 0.00 3.58
2992 3435 4.572985 TTCCACAGCAGAATTTTCACAG 57.427 40.909 0.00 0.00 0.00 3.66
2993 3436 2.294233 TCCACAGCAGAATTTTCACAGC 59.706 45.455 0.00 0.00 0.00 4.40
2994 3437 2.295349 CCACAGCAGAATTTTCACAGCT 59.705 45.455 0.00 0.00 34.13 4.24
2995 3438 3.305964 CACAGCAGAATTTTCACAGCTG 58.694 45.455 13.48 13.48 46.09 4.24
2997 3440 2.719426 GCAGAATTTTCACAGCTGCT 57.281 45.000 15.27 0.00 46.17 4.24
2998 3441 3.022607 GCAGAATTTTCACAGCTGCTT 57.977 42.857 15.27 0.00 46.17 3.91
2999 3442 3.387397 GCAGAATTTTCACAGCTGCTTT 58.613 40.909 15.27 0.00 46.17 3.51
3000 3443 3.805971 GCAGAATTTTCACAGCTGCTTTT 59.194 39.130 15.27 0.00 46.17 2.27
3001 3444 4.984161 GCAGAATTTTCACAGCTGCTTTTA 59.016 37.500 15.27 0.00 46.17 1.52
3002 3445 5.118203 GCAGAATTTTCACAGCTGCTTTTAG 59.882 40.000 15.27 0.00 46.17 1.85
3003 3446 6.441274 CAGAATTTTCACAGCTGCTTTTAGA 58.559 36.000 15.27 0.00 0.00 2.10
3004 3447 6.919662 CAGAATTTTCACAGCTGCTTTTAGAA 59.080 34.615 15.27 5.96 0.00 2.10
3005 3448 7.436080 CAGAATTTTCACAGCTGCTTTTAGAAA 59.564 33.333 15.27 11.50 0.00 2.52
3006 3449 8.146412 AGAATTTTCACAGCTGCTTTTAGAAAT 58.854 29.630 15.27 8.08 0.00 2.17
3007 3450 7.880059 ATTTTCACAGCTGCTTTTAGAAATC 57.120 32.000 15.27 0.00 0.00 2.17
3008 3451 5.376854 TTCACAGCTGCTTTTAGAAATCC 57.623 39.130 15.27 0.00 0.00 3.01
3009 3452 4.397420 TCACAGCTGCTTTTAGAAATCCA 58.603 39.130 15.27 0.00 0.00 3.41
3010 3453 4.216257 TCACAGCTGCTTTTAGAAATCCAC 59.784 41.667 15.27 0.00 0.00 4.02
3011 3454 4.022935 CACAGCTGCTTTTAGAAATCCACA 60.023 41.667 15.27 0.00 0.00 4.17
3012 3455 4.217118 ACAGCTGCTTTTAGAAATCCACAG 59.783 41.667 15.27 0.00 0.00 3.66
3013 3456 3.505836 GCTGCTTTTAGAAATCCACAGC 58.494 45.455 0.00 0.00 42.00 4.40
3014 3457 3.674410 GCTGCTTTTAGAAATCCACAGCC 60.674 47.826 0.00 0.00 42.58 4.85
3015 3458 3.495331 TGCTTTTAGAAATCCACAGCCA 58.505 40.909 0.00 0.00 0.00 4.75
3016 3459 3.894427 TGCTTTTAGAAATCCACAGCCAA 59.106 39.130 0.00 0.00 0.00 4.52
3017 3460 4.343526 TGCTTTTAGAAATCCACAGCCAAA 59.656 37.500 0.00 0.00 0.00 3.28
3018 3461 4.686091 GCTTTTAGAAATCCACAGCCAAAC 59.314 41.667 0.00 0.00 0.00 2.93
3019 3462 4.864704 TTTAGAAATCCACAGCCAAACC 57.135 40.909 0.00 0.00 0.00 3.27
3020 3463 2.380064 AGAAATCCACAGCCAAACCA 57.620 45.000 0.00 0.00 0.00 3.67
3021 3464 2.676748 AGAAATCCACAGCCAAACCAA 58.323 42.857 0.00 0.00 0.00 3.67
3022 3465 3.037549 AGAAATCCACAGCCAAACCAAA 58.962 40.909 0.00 0.00 0.00 3.28
3023 3466 2.908688 AATCCACAGCCAAACCAAAC 57.091 45.000 0.00 0.00 0.00 2.93
3024 3467 1.786937 ATCCACAGCCAAACCAAACA 58.213 45.000 0.00 0.00 0.00 2.83
3025 3468 1.110442 TCCACAGCCAAACCAAACAG 58.890 50.000 0.00 0.00 0.00 3.16
3047 3490 2.287373 GGCGCTGAGATTTCAAGAGATG 59.713 50.000 7.64 0.00 31.69 2.90
3083 3526 7.821846 CCCTGATAGATTTTAATACTGGAGCTC 59.178 40.741 4.71 4.71 0.00 4.09
3086 3529 5.615925 AGATTTTAATACTGGAGCTCGGT 57.384 39.130 7.83 11.55 38.72 4.69
3092 3535 1.681538 TACTGGAGCTCGGTGAGATC 58.318 55.000 17.53 3.57 43.40 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
260 270 3.993234 CGCGCGGCAGAGCAATAG 61.993 66.667 24.84 0.00 43.61 1.73
426 436 2.507992 CTTGCGCTCGGTGAGAGG 60.508 66.667 9.73 0.00 46.91 3.69
515 533 1.480789 TACCAACATCCAGCGCTCTA 58.519 50.000 7.13 0.00 0.00 2.43
517 535 0.727398 GTTACCAACATCCAGCGCTC 59.273 55.000 7.13 0.00 0.00 5.03
518 536 0.324943 AGTTACCAACATCCAGCGCT 59.675 50.000 2.64 2.64 0.00 5.92
519 537 0.447801 CAGTTACCAACATCCAGCGC 59.552 55.000 0.00 0.00 0.00 5.92
609 641 2.545742 GCGCCCAGAACTGTTTGAAAAT 60.546 45.455 0.00 0.00 0.00 1.82
610 642 1.202359 GCGCCCAGAACTGTTTGAAAA 60.202 47.619 0.00 0.00 0.00 2.29
611 643 0.383949 GCGCCCAGAACTGTTTGAAA 59.616 50.000 0.00 0.00 0.00 2.69
612 644 1.452145 GGCGCCCAGAACTGTTTGAA 61.452 55.000 18.11 0.00 0.00 2.69
613 645 1.896660 GGCGCCCAGAACTGTTTGA 60.897 57.895 18.11 0.00 0.00 2.69
615 647 0.037590 TATGGCGCCCAGAACTGTTT 59.962 50.000 26.77 0.00 36.75 2.83
695 746 7.405292 TCATTTCTATTTCAGGTTGGTCTCAT 58.595 34.615 0.00 0.00 0.00 2.90
706 757 7.009265 TCGCGAGTAAACTCATTTCTATTTCAG 59.991 37.037 3.71 0.00 43.00 3.02
772 823 4.380531 TCAAACACCTTTTGCAAACACAA 58.619 34.783 12.39 0.00 0.00 3.33
846 900 0.108019 ACGGGGGAAACAAGAGACAC 59.892 55.000 0.00 0.00 0.00 3.67
1092 1146 1.202417 AGGATGACGATGTTGTAGCGG 60.202 52.381 0.00 0.00 43.76 5.52
1417 1493 3.317711 TGGTTACCAACAACAGCATTGAG 59.682 43.478 0.00 0.72 0.00 3.02
1718 1806 0.911769 CACATGCCCAACCTCTCCTA 59.088 55.000 0.00 0.00 0.00 2.94
2001 2092 0.601558 ACGTCCAGTTACGATGCTGT 59.398 50.000 3.10 0.00 45.68 4.40
2166 2346 2.490115 AGTAGCTCAGGAAACTCACTCG 59.510 50.000 0.00 0.00 40.21 4.18
2196 2376 4.344679 TGGAATCAAAGAAACAATGGCAGT 59.655 37.500 0.00 0.00 0.00 4.40
2197 2377 4.687483 GTGGAATCAAAGAAACAATGGCAG 59.313 41.667 0.00 0.00 0.00 4.85
2200 2380 5.599732 TGTGTGGAATCAAAGAAACAATGG 58.400 37.500 0.00 0.00 0.00 3.16
2202 2382 6.757947 CAGTTGTGTGGAATCAAAGAAACAAT 59.242 34.615 0.00 0.00 0.00 2.71
2203 2383 6.098679 CAGTTGTGTGGAATCAAAGAAACAA 58.901 36.000 0.00 0.00 0.00 2.83
2204 2384 5.649557 CAGTTGTGTGGAATCAAAGAAACA 58.350 37.500 0.00 0.00 0.00 2.83
2205 2385 4.504097 GCAGTTGTGTGGAATCAAAGAAAC 59.496 41.667 0.00 0.00 0.00 2.78
2206 2386 4.402155 AGCAGTTGTGTGGAATCAAAGAAA 59.598 37.500 0.00 0.00 0.00 2.52
2207 2387 3.953612 AGCAGTTGTGTGGAATCAAAGAA 59.046 39.130 0.00 0.00 0.00 2.52
2208 2388 3.554934 AGCAGTTGTGTGGAATCAAAGA 58.445 40.909 0.00 0.00 0.00 2.52
2209 2389 3.996150 AGCAGTTGTGTGGAATCAAAG 57.004 42.857 0.00 0.00 0.00 2.77
2210 2390 3.249799 CGTAGCAGTTGTGTGGAATCAAA 59.750 43.478 0.00 0.00 0.00 2.69
2211 2391 2.805671 CGTAGCAGTTGTGTGGAATCAA 59.194 45.455 0.00 0.00 0.00 2.57
2212 2392 2.036604 TCGTAGCAGTTGTGTGGAATCA 59.963 45.455 0.00 0.00 0.00 2.57
2213 2393 2.668457 CTCGTAGCAGTTGTGTGGAATC 59.332 50.000 0.00 0.00 0.00 2.52
2214 2394 2.037251 ACTCGTAGCAGTTGTGTGGAAT 59.963 45.455 0.00 0.00 0.00 3.01
2250 2435 9.025041 CCTCCATTAAAATAGACTGAACCTTTT 57.975 33.333 0.00 0.00 0.00 2.27
2295 2480 6.041637 CCTCCATTGATTCATCCACAATTCAT 59.958 38.462 0.00 0.00 32.92 2.57
2296 2481 5.361571 CCTCCATTGATTCATCCACAATTCA 59.638 40.000 0.00 0.00 32.92 2.57
2297 2482 5.738208 GCCTCCATTGATTCATCCACAATTC 60.738 44.000 0.00 0.00 32.92 2.17
2298 2483 4.100498 GCCTCCATTGATTCATCCACAATT 59.900 41.667 0.00 0.00 32.92 2.32
2299 2484 3.640029 GCCTCCATTGATTCATCCACAAT 59.360 43.478 0.00 0.00 35.10 2.71
2300 2485 3.025978 GCCTCCATTGATTCATCCACAA 58.974 45.455 0.00 0.00 0.00 3.33
2301 2486 2.025131 TGCCTCCATTGATTCATCCACA 60.025 45.455 0.00 0.00 0.00 4.17
2302 2487 2.621998 CTGCCTCCATTGATTCATCCAC 59.378 50.000 0.00 0.00 0.00 4.02
2303 2488 2.242965 ACTGCCTCCATTGATTCATCCA 59.757 45.455 0.00 0.00 0.00 3.41
2304 2489 2.883386 GACTGCCTCCATTGATTCATCC 59.117 50.000 0.00 0.00 0.00 3.51
2305 2490 3.818180 AGACTGCCTCCATTGATTCATC 58.182 45.455 0.00 0.00 0.00 2.92
2312 2497 2.947652 CACCATTAGACTGCCTCCATTG 59.052 50.000 0.00 0.00 0.00 2.82
2328 2513 7.716998 AGATTTAAGATGTAAGCGAATCACCAT 59.283 33.333 0.00 0.00 0.00 3.55
2390 2575 2.633967 AGATGGAAAAAGGCATTGCACA 59.366 40.909 11.39 0.00 30.72 4.57
2392 2577 2.234414 GGAGATGGAAAAAGGCATTGCA 59.766 45.455 11.39 0.00 32.55 4.08
2416 2601 4.569943 GACTCAAGGTGATGCACTAGAAA 58.430 43.478 0.00 0.00 34.40 2.52
2417 2602 3.367395 CGACTCAAGGTGATGCACTAGAA 60.367 47.826 0.00 0.00 34.40 2.10
2581 3024 8.257602 TCATGCTATACCTGAAAGTATTACCA 57.742 34.615 0.00 0.00 34.74 3.25
2622 3065 4.561752 GGATGCCCCTATGGAGTATAGAT 58.438 47.826 0.00 0.00 41.10 1.98
2724 3167 3.591977 ACAGGGCCTTAGACTAATGGTTT 59.408 43.478 1.32 0.00 0.00 3.27
2739 3182 1.115326 AAGCTGAACCAAACAGGGCC 61.115 55.000 0.00 0.00 43.89 5.80
2740 3183 0.752658 AAAGCTGAACCAAACAGGGC 59.247 50.000 0.00 0.00 43.89 5.19
2741 3184 4.615912 CGATAAAAGCTGAACCAAACAGGG 60.616 45.833 0.00 0.00 43.89 4.45
2742 3185 4.215399 TCGATAAAAGCTGAACCAAACAGG 59.785 41.667 0.00 0.00 45.67 4.00
2743 3186 5.147162 GTCGATAAAAGCTGAACCAAACAG 58.853 41.667 0.00 0.00 38.27 3.16
2744 3187 4.319190 CGTCGATAAAAGCTGAACCAAACA 60.319 41.667 0.00 0.00 0.00 2.83
2745 3188 4.148891 CGTCGATAAAAGCTGAACCAAAC 58.851 43.478 0.00 0.00 0.00 2.93
2746 3189 3.187637 CCGTCGATAAAAGCTGAACCAAA 59.812 43.478 0.00 0.00 0.00 3.28
2747 3190 2.739913 CCGTCGATAAAAGCTGAACCAA 59.260 45.455 0.00 0.00 0.00 3.67
2748 3191 2.028839 TCCGTCGATAAAAGCTGAACCA 60.029 45.455 0.00 0.00 0.00 3.67
2749 3192 2.613691 TCCGTCGATAAAAGCTGAACC 58.386 47.619 0.00 0.00 0.00 3.62
2750 3193 4.260253 GGAATCCGTCGATAAAAGCTGAAC 60.260 45.833 0.00 0.00 0.00 3.18
2751 3194 3.869246 GGAATCCGTCGATAAAAGCTGAA 59.131 43.478 0.00 0.00 0.00 3.02
2752 3195 3.454375 GGAATCCGTCGATAAAAGCTGA 58.546 45.455 0.00 0.00 0.00 4.26
2753 3196 2.218759 CGGAATCCGTCGATAAAAGCTG 59.781 50.000 14.46 0.00 42.73 4.24
2754 3197 2.470821 CGGAATCCGTCGATAAAAGCT 58.529 47.619 14.46 0.00 42.73 3.74
2755 3198 2.924432 CGGAATCCGTCGATAAAAGC 57.076 50.000 14.46 0.00 42.73 3.51
2776 3219 4.765449 AGATTCTGCTGCGCGGCA 62.765 61.111 39.10 39.10 40.15 5.69
2777 3220 4.233635 CAGATTCTGCTGCGCGGC 62.234 66.667 34.00 34.00 34.49 6.53
2778 3221 2.102438 TTCAGATTCTGCTGCGCGG 61.102 57.895 13.18 13.18 35.86 6.46
2779 3222 1.059994 GTTCAGATTCTGCTGCGCG 59.940 57.895 8.89 0.00 35.86 6.86
2780 3223 1.300971 TGGTTCAGATTCTGCTGCGC 61.301 55.000 8.89 0.00 35.86 6.09
2781 3224 1.159285 TTGGTTCAGATTCTGCTGCG 58.841 50.000 8.89 0.00 35.86 5.18
2782 3225 2.094854 CCTTTGGTTCAGATTCTGCTGC 60.095 50.000 8.89 0.00 35.86 5.25
2783 3226 2.490903 CCCTTTGGTTCAGATTCTGCTG 59.509 50.000 8.89 0.00 37.24 4.41
2784 3227 2.800250 CCCTTTGGTTCAGATTCTGCT 58.200 47.619 8.89 0.00 0.00 4.24
2785 3228 1.203287 GCCCTTTGGTTCAGATTCTGC 59.797 52.381 8.89 0.00 0.00 4.26
2786 3229 1.470098 CGCCCTTTGGTTCAGATTCTG 59.530 52.381 7.38 7.38 0.00 3.02
2787 3230 1.351017 TCGCCCTTTGGTTCAGATTCT 59.649 47.619 0.00 0.00 0.00 2.40
2788 3231 1.821216 TCGCCCTTTGGTTCAGATTC 58.179 50.000 0.00 0.00 0.00 2.52
2789 3232 1.886542 GTTCGCCCTTTGGTTCAGATT 59.113 47.619 0.00 0.00 0.00 2.40
2790 3233 1.534729 GTTCGCCCTTTGGTTCAGAT 58.465 50.000 0.00 0.00 0.00 2.90
2791 3234 0.536460 GGTTCGCCCTTTGGTTCAGA 60.536 55.000 0.00 0.00 0.00 3.27
2792 3235 1.956802 GGTTCGCCCTTTGGTTCAG 59.043 57.895 0.00 0.00 0.00 3.02
2793 3236 4.167597 GGTTCGCCCTTTGGTTCA 57.832 55.556 0.00 0.00 0.00 3.18
2803 3246 2.115291 GGATTCTGCTGGGTTCGCC 61.115 63.158 0.00 0.00 0.00 5.54
2804 3247 2.464459 CGGATTCTGCTGGGTTCGC 61.464 63.158 0.00 0.00 0.00 4.70
2805 3248 0.179073 ATCGGATTCTGCTGGGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
2806 3249 1.943340 GAATCGGATTCTGCTGGGTTC 59.057 52.381 20.70 0.00 36.37 3.62
2807 3250 1.408822 GGAATCGGATTCTGCTGGGTT 60.409 52.381 25.29 0.00 39.24 4.11
2808 3251 0.181350 GGAATCGGATTCTGCTGGGT 59.819 55.000 25.29 0.00 39.24 4.51
2809 3252 0.181114 TGGAATCGGATTCTGCTGGG 59.819 55.000 25.29 0.00 39.24 4.45
2810 3253 1.139654 TCTGGAATCGGATTCTGCTGG 59.860 52.381 25.29 13.47 39.24 4.85
2811 3254 2.609427 TCTGGAATCGGATTCTGCTG 57.391 50.000 25.29 15.51 39.24 4.41
2812 3255 3.634397 TTTCTGGAATCGGATTCTGCT 57.366 42.857 25.29 0.00 39.24 4.24
2813 3256 3.251972 GGATTTCTGGAATCGGATTCTGC 59.748 47.826 25.29 13.44 44.21 4.26
2814 3257 3.496130 CGGATTTCTGGAATCGGATTCTG 59.504 47.826 25.29 19.01 44.21 3.02
2815 3258 3.733337 CGGATTTCTGGAATCGGATTCT 58.267 45.455 25.29 8.76 44.21 2.40
2816 3259 2.224314 GCGGATTTCTGGAATCGGATTC 59.776 50.000 20.01 20.01 44.21 2.52
2817 3260 2.158755 AGCGGATTTCTGGAATCGGATT 60.159 45.455 17.58 2.19 44.21 3.01
2818 3261 1.417890 AGCGGATTTCTGGAATCGGAT 59.582 47.619 17.58 10.19 44.21 4.18
2819 3262 0.830648 AGCGGATTTCTGGAATCGGA 59.169 50.000 17.58 0.00 44.21 4.55
2820 3263 0.940126 CAGCGGATTTCTGGAATCGG 59.060 55.000 10.90 10.90 44.21 4.18
2821 3264 0.305922 GCAGCGGATTTCTGGAATCG 59.694 55.000 2.68 0.40 44.21 3.34
2822 3265 0.665298 GGCAGCGGATTTCTGGAATC 59.335 55.000 0.00 0.00 42.84 2.52
2823 3266 0.034186 TGGCAGCGGATTTCTGGAAT 60.034 50.000 0.00 0.00 32.41 3.01
2824 3267 0.251121 TTGGCAGCGGATTTCTGGAA 60.251 50.000 0.00 0.00 32.41 3.53
2825 3268 0.251121 TTTGGCAGCGGATTTCTGGA 60.251 50.000 0.00 0.00 32.41 3.86
2826 3269 0.602562 TTTTGGCAGCGGATTTCTGG 59.397 50.000 0.00 0.00 32.41 3.86
2827 3270 2.165030 AGATTTTGGCAGCGGATTTCTG 59.835 45.455 0.00 0.00 34.79 3.02
2828 3271 2.165030 CAGATTTTGGCAGCGGATTTCT 59.835 45.455 0.00 0.00 0.00 2.52
2829 3272 2.164219 TCAGATTTTGGCAGCGGATTTC 59.836 45.455 0.00 0.00 0.00 2.17
2830 3273 2.170166 TCAGATTTTGGCAGCGGATTT 58.830 42.857 0.00 0.00 0.00 2.17
2831 3274 1.838112 TCAGATTTTGGCAGCGGATT 58.162 45.000 0.00 0.00 0.00 3.01
2832 3275 1.474077 GTTCAGATTTTGGCAGCGGAT 59.526 47.619 0.00 0.00 0.00 4.18
2833 3276 0.881118 GTTCAGATTTTGGCAGCGGA 59.119 50.000 0.00 0.00 0.00 5.54
2834 3277 0.109132 GGTTCAGATTTTGGCAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
2835 3278 0.597568 TGGTTCAGATTTTGGCAGCG 59.402 50.000 0.00 0.00 0.00 5.18
2836 3279 2.818130 TTGGTTCAGATTTTGGCAGC 57.182 45.000 0.00 0.00 0.00 5.25
2837 3280 3.495753 GCTTTTGGTTCAGATTTTGGCAG 59.504 43.478 0.00 0.00 0.00 4.85
2838 3281 3.465871 GCTTTTGGTTCAGATTTTGGCA 58.534 40.909 0.00 0.00 0.00 4.92
2839 3282 2.476241 CGCTTTTGGTTCAGATTTTGGC 59.524 45.455 0.00 0.00 0.00 4.52
2840 3283 3.059166 CCGCTTTTGGTTCAGATTTTGG 58.941 45.455 0.00 0.00 0.00 3.28
2841 3284 3.976169 TCCGCTTTTGGTTCAGATTTTG 58.024 40.909 0.00 0.00 0.00 2.44
2842 3285 4.620982 CTTCCGCTTTTGGTTCAGATTTT 58.379 39.130 0.00 0.00 0.00 1.82
2843 3286 3.552890 GCTTCCGCTTTTGGTTCAGATTT 60.553 43.478 0.00 0.00 0.00 2.17
2844 3287 2.029918 GCTTCCGCTTTTGGTTCAGATT 60.030 45.455 0.00 0.00 0.00 2.40
2845 3288 1.541588 GCTTCCGCTTTTGGTTCAGAT 59.458 47.619 0.00 0.00 0.00 2.90
2846 3289 0.951558 GCTTCCGCTTTTGGTTCAGA 59.048 50.000 0.00 0.00 0.00 3.27
2847 3290 0.667993 TGCTTCCGCTTTTGGTTCAG 59.332 50.000 0.00 0.00 36.97 3.02
2848 3291 0.667993 CTGCTTCCGCTTTTGGTTCA 59.332 50.000 0.00 0.00 36.97 3.18
2849 3292 0.664466 GCTGCTTCCGCTTTTGGTTC 60.664 55.000 0.00 0.00 36.97 3.62
2850 3293 1.363807 GCTGCTTCCGCTTTTGGTT 59.636 52.632 0.00 0.00 36.97 3.67
2851 3294 2.564721 GGCTGCTTCCGCTTTTGGT 61.565 57.895 0.00 0.00 36.97 3.67
2852 3295 2.259511 GGCTGCTTCCGCTTTTGG 59.740 61.111 0.00 0.00 36.97 3.28
2853 3296 2.259511 GGGCTGCTTCCGCTTTTG 59.740 61.111 0.00 0.00 36.97 2.44
2854 3297 2.203480 TGGGCTGCTTCCGCTTTT 60.203 55.556 0.00 0.00 36.97 2.27
2855 3298 2.674380 CTGGGCTGCTTCCGCTTT 60.674 61.111 0.00 0.00 36.97 3.51
2856 3299 4.729918 CCTGGGCTGCTTCCGCTT 62.730 66.667 0.00 0.00 36.97 4.68
2858 3301 4.496336 ATCCTGGGCTGCTTCCGC 62.496 66.667 0.00 0.00 0.00 5.54
2859 3302 1.971505 TACATCCTGGGCTGCTTCCG 61.972 60.000 0.00 0.00 0.00 4.30
2860 3303 0.464554 GTACATCCTGGGCTGCTTCC 60.465 60.000 0.00 0.00 0.00 3.46
2861 3304 0.543749 AGTACATCCTGGGCTGCTTC 59.456 55.000 0.00 0.00 0.00 3.86
2862 3305 0.995024 AAGTACATCCTGGGCTGCTT 59.005 50.000 0.00 0.00 0.00 3.91
2863 3306 0.995024 AAAGTACATCCTGGGCTGCT 59.005 50.000 0.00 0.00 0.00 4.24
2864 3307 1.745653 GAAAAGTACATCCTGGGCTGC 59.254 52.381 0.00 0.00 0.00 5.25
2865 3308 3.071874 TGAAAAGTACATCCTGGGCTG 57.928 47.619 0.00 0.00 0.00 4.85
2866 3309 3.806949 TTGAAAAGTACATCCTGGGCT 57.193 42.857 0.00 0.00 0.00 5.19
2867 3310 4.864704 TTTTGAAAAGTACATCCTGGGC 57.135 40.909 0.00 0.00 0.00 5.36
2868 3311 6.434028 TCAGATTTTGAAAAGTACATCCTGGG 59.566 38.462 0.00 0.00 31.34 4.45
2869 3312 7.452880 TCAGATTTTGAAAAGTACATCCTGG 57.547 36.000 0.00 0.00 31.34 4.45
2870 3313 9.565213 GAATCAGATTTTGAAAAGTACATCCTG 57.435 33.333 0.00 0.00 39.77 3.86
2871 3314 8.743714 GGAATCAGATTTTGAAAAGTACATCCT 58.256 33.333 0.00 0.00 39.77 3.24
2872 3315 7.698130 CGGAATCAGATTTTGAAAAGTACATCC 59.302 37.037 0.00 0.00 39.77 3.51
2873 3316 7.218963 GCGGAATCAGATTTTGAAAAGTACATC 59.781 37.037 0.00 0.00 39.77 3.06
2874 3317 7.029563 GCGGAATCAGATTTTGAAAAGTACAT 58.970 34.615 0.00 0.00 39.77 2.29
2875 3318 6.206634 AGCGGAATCAGATTTTGAAAAGTACA 59.793 34.615 0.00 0.00 39.77 2.90
2876 3319 6.524586 CAGCGGAATCAGATTTTGAAAAGTAC 59.475 38.462 0.00 0.00 39.77 2.73
2877 3320 6.611381 CAGCGGAATCAGATTTTGAAAAGTA 58.389 36.000 0.00 0.00 39.77 2.24
2878 3321 5.464168 CAGCGGAATCAGATTTTGAAAAGT 58.536 37.500 0.00 0.00 39.77 2.66
2879 3322 4.325472 GCAGCGGAATCAGATTTTGAAAAG 59.675 41.667 0.00 0.00 39.77 2.27
2880 3323 4.236935 GCAGCGGAATCAGATTTTGAAAA 58.763 39.130 0.00 0.00 39.77 2.29
2881 3324 3.670359 CGCAGCGGAATCAGATTTTGAAA 60.670 43.478 7.00 0.00 39.77 2.69
2882 3325 2.159531 CGCAGCGGAATCAGATTTTGAA 60.160 45.455 7.00 0.00 39.77 2.69
2883 3326 1.398041 CGCAGCGGAATCAGATTTTGA 59.602 47.619 7.00 0.00 40.85 2.69
2884 3327 1.818850 CGCAGCGGAATCAGATTTTG 58.181 50.000 7.00 0.00 0.00 2.44
2897 3340 3.443045 AGATTTTGGCCCGCAGCG 61.443 61.111 8.18 8.18 45.17 5.18
2898 3341 1.876497 TTCAGATTTTGGCCCGCAGC 61.876 55.000 0.00 0.00 42.60 5.25
2899 3342 0.602562 TTTCAGATTTTGGCCCGCAG 59.397 50.000 0.00 0.00 0.00 5.18
2900 3343 1.043816 TTTTCAGATTTTGGCCCGCA 58.956 45.000 0.00 0.00 0.00 5.69
2901 3344 2.068519 CTTTTTCAGATTTTGGCCCGC 58.931 47.619 0.00 0.00 0.00 6.13
2902 3345 3.385193 ACTTTTTCAGATTTTGGCCCG 57.615 42.857 0.00 0.00 0.00 6.13
2903 3346 4.450976 ACAACTTTTTCAGATTTTGGCCC 58.549 39.130 0.00 0.00 0.00 5.80
2904 3347 6.928492 TGATACAACTTTTTCAGATTTTGGCC 59.072 34.615 0.00 0.00 0.00 5.36
2905 3348 7.359514 GCTGATACAACTTTTTCAGATTTTGGC 60.360 37.037 3.11 0.00 38.25 4.52
2906 3349 7.869429 AGCTGATACAACTTTTTCAGATTTTGG 59.131 33.333 3.11 0.00 38.25 3.28
2907 3350 8.697067 CAGCTGATACAACTTTTTCAGATTTTG 58.303 33.333 8.42 0.00 38.25 2.44
2908 3351 7.869429 CCAGCTGATACAACTTTTTCAGATTTT 59.131 33.333 17.39 0.00 38.25 1.82
2909 3352 7.014615 ACCAGCTGATACAACTTTTTCAGATTT 59.985 33.333 17.39 0.00 38.25 2.17
2910 3353 6.491403 ACCAGCTGATACAACTTTTTCAGATT 59.509 34.615 17.39 0.00 38.25 2.40
2911 3354 6.006449 ACCAGCTGATACAACTTTTTCAGAT 58.994 36.000 17.39 0.00 38.25 2.90
2912 3355 5.376625 ACCAGCTGATACAACTTTTTCAGA 58.623 37.500 17.39 0.00 38.25 3.27
2913 3356 5.695851 ACCAGCTGATACAACTTTTTCAG 57.304 39.130 17.39 0.00 38.86 3.02
2914 3357 6.272318 CAAACCAGCTGATACAACTTTTTCA 58.728 36.000 17.39 0.00 0.00 2.69
2915 3358 5.175673 GCAAACCAGCTGATACAACTTTTTC 59.824 40.000 17.39 0.00 0.00 2.29
2916 3359 5.049828 GCAAACCAGCTGATACAACTTTTT 58.950 37.500 17.39 0.00 0.00 1.94
2917 3360 4.501400 GGCAAACCAGCTGATACAACTTTT 60.501 41.667 17.39 0.00 35.26 2.27
2918 3361 3.005791 GGCAAACCAGCTGATACAACTTT 59.994 43.478 17.39 0.00 35.26 2.66
2919 3362 2.558359 GGCAAACCAGCTGATACAACTT 59.442 45.455 17.39 0.00 35.26 2.66
2920 3363 2.162681 GGCAAACCAGCTGATACAACT 58.837 47.619 17.39 0.00 35.26 3.16
2921 3364 1.885887 TGGCAAACCAGCTGATACAAC 59.114 47.619 17.39 1.73 42.67 3.32
2922 3365 2.284754 TGGCAAACCAGCTGATACAA 57.715 45.000 17.39 0.00 42.67 2.41
2930 3373 7.845340 GATGTAGGTCATTTGGCAAACCAGC 62.845 48.000 16.00 13.65 41.40 4.85
2931 3374 4.380867 GATGTAGGTCATTTGGCAAACCAG 60.381 45.833 16.00 8.58 41.40 4.00
2932 3375 3.509575 GATGTAGGTCATTTGGCAAACCA 59.490 43.478 16.00 1.33 39.74 3.67
2933 3376 3.763897 AGATGTAGGTCATTTGGCAAACC 59.236 43.478 16.00 13.12 36.83 3.27
2934 3377 5.391312 AAGATGTAGGTCATTTGGCAAAC 57.609 39.130 16.00 3.12 36.83 2.93
2935 3378 6.418057 AAAAGATGTAGGTCATTTGGCAAA 57.582 33.333 16.01 16.01 36.83 3.68
2936 3379 6.041409 TGAAAAAGATGTAGGTCATTTGGCAA 59.959 34.615 0.00 0.00 36.83 4.52
2937 3380 5.538053 TGAAAAAGATGTAGGTCATTTGGCA 59.462 36.000 0.00 0.00 36.83 4.92
2938 3381 5.863935 GTGAAAAAGATGTAGGTCATTTGGC 59.136 40.000 0.00 0.00 36.83 4.52
2939 3382 6.980593 TGTGAAAAAGATGTAGGTCATTTGG 58.019 36.000 0.00 0.00 36.83 3.28
2940 3383 8.298854 TGATGTGAAAAAGATGTAGGTCATTTG 58.701 33.333 0.00 0.00 36.83 2.32
2941 3384 8.408043 TGATGTGAAAAAGATGTAGGTCATTT 57.592 30.769 0.00 0.00 36.83 2.32
2942 3385 7.884877 TCTGATGTGAAAAAGATGTAGGTCATT 59.115 33.333 0.00 0.00 36.83 2.57
2943 3386 7.397221 TCTGATGTGAAAAAGATGTAGGTCAT 58.603 34.615 0.00 0.00 39.77 3.06
2944 3387 6.768483 TCTGATGTGAAAAAGATGTAGGTCA 58.232 36.000 0.00 0.00 0.00 4.02
2945 3388 7.856145 ATCTGATGTGAAAAAGATGTAGGTC 57.144 36.000 0.00 0.00 0.00 3.85
2946 3389 8.641498 AAATCTGATGTGAAAAAGATGTAGGT 57.359 30.769 0.00 0.00 29.93 3.08
2947 3390 9.565213 GAAAATCTGATGTGAAAAAGATGTAGG 57.435 33.333 0.00 0.00 29.93 3.18
2948 3391 9.565213 GGAAAATCTGATGTGAAAAAGATGTAG 57.435 33.333 0.00 0.00 29.93 2.74
2949 3392 9.076781 TGGAAAATCTGATGTGAAAAAGATGTA 57.923 29.630 0.00 0.00 29.93 2.29
2950 3393 7.869429 GTGGAAAATCTGATGTGAAAAAGATGT 59.131 33.333 0.00 0.00 29.93 3.06
2951 3394 7.868922 TGTGGAAAATCTGATGTGAAAAAGATG 59.131 33.333 0.00 0.00 29.93 2.90
2952 3395 7.954835 TGTGGAAAATCTGATGTGAAAAAGAT 58.045 30.769 0.00 0.00 0.00 2.40
2953 3396 7.345422 TGTGGAAAATCTGATGTGAAAAAGA 57.655 32.000 0.00 0.00 0.00 2.52
2954 3397 6.145048 GCTGTGGAAAATCTGATGTGAAAAAG 59.855 38.462 0.00 0.00 0.00 2.27
2955 3398 5.984926 GCTGTGGAAAATCTGATGTGAAAAA 59.015 36.000 0.00 0.00 0.00 1.94
2956 3399 5.068855 TGCTGTGGAAAATCTGATGTGAAAA 59.931 36.000 0.00 0.00 0.00 2.29
2957 3400 4.583907 TGCTGTGGAAAATCTGATGTGAAA 59.416 37.500 0.00 0.00 0.00 2.69
2958 3401 4.143543 TGCTGTGGAAAATCTGATGTGAA 58.856 39.130 0.00 0.00 0.00 3.18
2959 3402 3.753815 TGCTGTGGAAAATCTGATGTGA 58.246 40.909 0.00 0.00 0.00 3.58
2960 3403 3.754850 TCTGCTGTGGAAAATCTGATGTG 59.245 43.478 0.00 0.00 0.00 3.21
2961 3404 4.025040 TCTGCTGTGGAAAATCTGATGT 57.975 40.909 0.00 0.00 0.00 3.06
2962 3405 5.578005 ATTCTGCTGTGGAAAATCTGATG 57.422 39.130 0.00 0.00 0.00 3.07
2963 3406 6.600882 AAATTCTGCTGTGGAAAATCTGAT 57.399 33.333 0.00 0.00 0.00 2.90
2964 3407 6.040729 TGAAAATTCTGCTGTGGAAAATCTGA 59.959 34.615 0.00 0.00 0.00 3.27
2965 3408 6.145048 GTGAAAATTCTGCTGTGGAAAATCTG 59.855 38.462 0.00 0.00 0.00 2.90
2966 3409 6.183360 TGTGAAAATTCTGCTGTGGAAAATCT 60.183 34.615 0.00 0.00 0.00 2.40
2967 3410 5.984926 TGTGAAAATTCTGCTGTGGAAAATC 59.015 36.000 0.00 0.00 0.00 2.17
2968 3411 5.916318 TGTGAAAATTCTGCTGTGGAAAAT 58.084 33.333 0.00 0.00 0.00 1.82
2969 3412 5.336150 TGTGAAAATTCTGCTGTGGAAAA 57.664 34.783 0.00 0.00 0.00 2.29
2970 3413 4.737352 GCTGTGAAAATTCTGCTGTGGAAA 60.737 41.667 0.00 0.00 0.00 3.13
2971 3414 3.243501 GCTGTGAAAATTCTGCTGTGGAA 60.244 43.478 0.00 0.00 0.00 3.53
2972 3415 2.294233 GCTGTGAAAATTCTGCTGTGGA 59.706 45.455 0.00 0.00 0.00 4.02
2973 3416 2.295349 AGCTGTGAAAATTCTGCTGTGG 59.705 45.455 0.00 0.00 31.72 4.17
2974 3417 3.305964 CAGCTGTGAAAATTCTGCTGTG 58.694 45.455 5.25 5.47 39.41 3.66
2975 3418 2.288030 GCAGCTGTGAAAATTCTGCTGT 60.288 45.455 16.64 2.62 44.71 4.40
2976 3419 2.325761 GCAGCTGTGAAAATTCTGCTG 58.674 47.619 16.64 20.70 44.71 4.41
2977 3420 2.719426 GCAGCTGTGAAAATTCTGCT 57.281 45.000 16.64 0.00 44.71 4.24
2979 3422 6.441274 TCTAAAAGCAGCTGTGAAAATTCTG 58.559 36.000 16.64 0.00 0.00 3.02
2980 3423 6.639632 TCTAAAAGCAGCTGTGAAAATTCT 57.360 33.333 16.64 0.00 0.00 2.40
2981 3424 7.698836 TTTCTAAAAGCAGCTGTGAAAATTC 57.301 32.000 16.64 0.00 0.00 2.17
2982 3425 7.386025 GGATTTCTAAAAGCAGCTGTGAAAATT 59.614 33.333 16.64 5.23 0.00 1.82
2983 3426 6.870439 GGATTTCTAAAAGCAGCTGTGAAAAT 59.130 34.615 16.64 11.27 0.00 1.82
2984 3427 6.183360 TGGATTTCTAAAAGCAGCTGTGAAAA 60.183 34.615 16.64 7.20 0.00 2.29
2985 3428 5.301551 TGGATTTCTAAAAGCAGCTGTGAAA 59.698 36.000 16.64 15.06 0.00 2.69
2986 3429 4.826733 TGGATTTCTAAAAGCAGCTGTGAA 59.173 37.500 16.64 7.75 0.00 3.18
2987 3430 4.216257 GTGGATTTCTAAAAGCAGCTGTGA 59.784 41.667 16.64 1.92 0.00 3.58
2988 3431 4.022935 TGTGGATTTCTAAAAGCAGCTGTG 60.023 41.667 16.64 0.00 0.00 3.66
2989 3432 4.144297 TGTGGATTTCTAAAAGCAGCTGT 58.856 39.130 16.64 0.00 0.00 4.40
2990 3433 4.730657 CTGTGGATTTCTAAAAGCAGCTG 58.269 43.478 10.11 10.11 0.00 4.24
2991 3434 3.192212 GCTGTGGATTTCTAAAAGCAGCT 59.808 43.478 0.00 0.00 43.08 4.24
2992 3435 3.505836 GCTGTGGATTTCTAAAAGCAGC 58.494 45.455 0.00 0.00 40.66 5.25
2993 3436 3.507233 TGGCTGTGGATTTCTAAAAGCAG 59.493 43.478 0.00 0.00 0.00 4.24
2994 3437 3.495331 TGGCTGTGGATTTCTAAAAGCA 58.505 40.909 0.00 0.00 0.00 3.91
2995 3438 4.519540 TTGGCTGTGGATTTCTAAAAGC 57.480 40.909 0.00 0.00 0.00 3.51
2996 3439 5.221422 TGGTTTGGCTGTGGATTTCTAAAAG 60.221 40.000 0.00 0.00 0.00 2.27
2997 3440 4.651503 TGGTTTGGCTGTGGATTTCTAAAA 59.348 37.500 0.00 0.00 0.00 1.52
2998 3441 4.219115 TGGTTTGGCTGTGGATTTCTAAA 58.781 39.130 0.00 0.00 0.00 1.85
2999 3442 3.838565 TGGTTTGGCTGTGGATTTCTAA 58.161 40.909 0.00 0.00 0.00 2.10
3000 3443 3.517296 TGGTTTGGCTGTGGATTTCTA 57.483 42.857 0.00 0.00 0.00 2.10
3001 3444 2.380064 TGGTTTGGCTGTGGATTTCT 57.620 45.000 0.00 0.00 0.00 2.52
3002 3445 3.130633 GTTTGGTTTGGCTGTGGATTTC 58.869 45.455 0.00 0.00 0.00 2.17
3003 3446 2.503356 TGTTTGGTTTGGCTGTGGATTT 59.497 40.909 0.00 0.00 0.00 2.17
3004 3447 2.102925 CTGTTTGGTTTGGCTGTGGATT 59.897 45.455 0.00 0.00 0.00 3.01
3005 3448 1.688197 CTGTTTGGTTTGGCTGTGGAT 59.312 47.619 0.00 0.00 0.00 3.41
3006 3449 1.110442 CTGTTTGGTTTGGCTGTGGA 58.890 50.000 0.00 0.00 0.00 4.02
3007 3450 0.104671 CCTGTTTGGTTTGGCTGTGG 59.895 55.000 0.00 0.00 0.00 4.17
3008 3451 0.104671 CCCTGTTTGGTTTGGCTGTG 59.895 55.000 0.00 0.00 0.00 3.66
3009 3452 1.685355 GCCCTGTTTGGTTTGGCTGT 61.685 55.000 0.00 0.00 39.05 4.40
3010 3453 1.069596 GCCCTGTTTGGTTTGGCTG 59.930 57.895 0.00 0.00 39.05 4.85
3011 3454 2.498056 CGCCCTGTTTGGTTTGGCT 61.498 57.895 0.00 0.00 39.97 4.75
3012 3455 2.028925 CGCCCTGTTTGGTTTGGC 59.971 61.111 0.00 0.00 38.74 4.52
3013 3456 2.028925 GCGCCCTGTTTGGTTTGG 59.971 61.111 0.00 0.00 0.00 3.28
3014 3457 1.300080 CAGCGCCCTGTTTGGTTTG 60.300 57.895 2.29 0.00 34.31 2.93
3015 3458 1.454847 TCAGCGCCCTGTTTGGTTT 60.455 52.632 2.29 0.00 40.09 3.27
3016 3459 1.898574 CTCAGCGCCCTGTTTGGTT 60.899 57.895 2.29 0.00 40.09 3.67
3017 3460 2.129555 ATCTCAGCGCCCTGTTTGGT 62.130 55.000 2.29 0.00 40.09 3.67
3018 3461 0.962356 AATCTCAGCGCCCTGTTTGG 60.962 55.000 2.29 0.00 40.09 3.28
3019 3462 0.883833 AAATCTCAGCGCCCTGTTTG 59.116 50.000 2.29 0.00 40.09 2.93
3020 3463 1.168714 GAAATCTCAGCGCCCTGTTT 58.831 50.000 2.29 0.00 40.09 2.83
3021 3464 0.036732 TGAAATCTCAGCGCCCTGTT 59.963 50.000 2.29 0.00 40.09 3.16
3022 3465 0.036732 TTGAAATCTCAGCGCCCTGT 59.963 50.000 2.29 0.00 40.09 4.00
3023 3466 0.731417 CTTGAAATCTCAGCGCCCTG 59.269 55.000 2.29 0.00 40.54 4.45
3024 3467 0.615331 TCTTGAAATCTCAGCGCCCT 59.385 50.000 2.29 0.00 31.69 5.19
3025 3468 1.012841 CTCTTGAAATCTCAGCGCCC 58.987 55.000 2.29 0.00 31.69 6.13
3047 3490 4.965200 AATCTATCAGGGTGCTTAGGTC 57.035 45.455 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.