Multiple sequence alignment - TraesCS1D01G314900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G314900 chr1D 100.000 5426 0 0 1 5426 410469208 410463783 0.000000e+00 10021.0
1 TraesCS1D01G314900 chr1A 96.435 4264 111 18 765 5008 506285885 506281643 0.000000e+00 6994.0
2 TraesCS1D01G314900 chr1A 87.690 593 29 17 5 589 506286694 506286138 0.000000e+00 651.0
3 TraesCS1D01G314900 chr1A 86.971 591 52 9 5 590 506306234 506305664 4.580000e-180 641.0
4 TraesCS1D01G314900 chr1B 95.668 3901 116 20 1 3869 553022072 553018193 0.000000e+00 6218.0
5 TraesCS1D01G314900 chr1B 92.745 1213 50 12 3871 5061 553018112 553016916 0.000000e+00 1718.0
6 TraesCS1D01G314900 chr6B 82.612 1455 196 42 2861 4284 632883997 632885425 0.000000e+00 1232.0
7 TraesCS1D01G314900 chr6B 92.157 102 5 2 5324 5424 58416679 58416778 2.040000e-29 141.0
8 TraesCS1D01G314900 chr6D 92.201 718 39 11 3122 3826 163354726 163354013 0.000000e+00 1000.0
9 TraesCS1D01G314900 chr6D 83.543 796 118 12 3495 4284 419889458 419890246 0.000000e+00 732.0
10 TraesCS1D01G314900 chr6D 82.615 650 79 24 2864 3491 419888774 419889411 1.330000e-150 544.0
11 TraesCS1D01G314900 chr6D 92.683 41 3 0 3823 3863 256319514 256319474 5.870000e-05 60.2
12 TraesCS1D01G314900 chr4D 92.320 638 40 4 3197 3826 447981375 447980739 0.000000e+00 898.0
13 TraesCS1D01G314900 chr4D 89.644 309 23 5 151 458 435604403 435604703 8.530000e-103 385.0
14 TraesCS1D01G314900 chr4D 97.895 95 2 0 5330 5424 318752116 318752022 1.210000e-36 165.0
15 TraesCS1D01G314900 chr6A 81.873 993 130 34 2861 3813 562939746 562940728 0.000000e+00 791.0
16 TraesCS1D01G314900 chr6A 82.786 883 121 21 3409 4279 562941808 562942671 0.000000e+00 760.0
17 TraesCS1D01G314900 chr6A 86.779 416 53 2 3865 4279 562940938 562941352 3.830000e-126 462.0
18 TraesCS1D01G314900 chr6A 93.684 95 6 0 5330 5424 350669297 350669391 5.670000e-30 143.0
19 TraesCS1D01G314900 chr6A 92.683 41 3 0 3823 3863 340046419 340046379 5.870000e-05 60.2
20 TraesCS1D01G314900 chr2B 91.981 424 25 4 3410 3826 654361143 654361564 2.180000e-163 586.0
21 TraesCS1D01G314900 chr5B 90.888 428 29 5 3407 3826 614979987 614980412 2.840000e-157 566.0
22 TraesCS1D01G314900 chr7B 91.038 424 29 4 3410 3826 686930791 686930370 1.020000e-156 564.0
23 TraesCS1D01G314900 chr7B 96.629 89 3 0 5336 5424 677053563 677053475 1.220000e-31 148.0
24 TraesCS1D01G314900 chr7B 93.000 100 3 3 5326 5424 686831938 686831842 5.670000e-30 143.0
25 TraesCS1D01G314900 chr4A 91.892 407 25 3 3427 3826 611200948 611200543 3.670000e-156 562.0
26 TraesCS1D01G314900 chr4A 95.652 92 3 1 5333 5424 11669008 11668918 4.380000e-31 147.0
27 TraesCS1D01G314900 chr3D 96.739 92 2 1 5334 5424 476504274 476504365 9.410000e-33 152.0
28 TraesCS1D01G314900 chr5A 95.652 92 2 1 5333 5424 399772400 399772311 4.380000e-31 147.0
29 TraesCS1D01G314900 chr3A 95.604 91 2 1 5333 5423 483788518 483788430 1.580000e-30 145.0
30 TraesCS1D01G314900 chr2A 100.000 36 0 0 3833 3868 526740502 526740537 3.510000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G314900 chr1D 410463783 410469208 5425 True 10021.0 10021 100.000000 1 5426 1 chr1D.!!$R1 5425
1 TraesCS1D01G314900 chr1A 506281643 506286694 5051 True 3822.5 6994 92.062500 5 5008 2 chr1A.!!$R2 5003
2 TraesCS1D01G314900 chr1A 506305664 506306234 570 True 641.0 641 86.971000 5 590 1 chr1A.!!$R1 585
3 TraesCS1D01G314900 chr1B 553016916 553022072 5156 True 3968.0 6218 94.206500 1 5061 2 chr1B.!!$R1 5060
4 TraesCS1D01G314900 chr6B 632883997 632885425 1428 False 1232.0 1232 82.612000 2861 4284 1 chr6B.!!$F2 1423
5 TraesCS1D01G314900 chr6D 163354013 163354726 713 True 1000.0 1000 92.201000 3122 3826 1 chr6D.!!$R1 704
6 TraesCS1D01G314900 chr6D 419888774 419890246 1472 False 638.0 732 83.079000 2864 4284 2 chr6D.!!$F1 1420
7 TraesCS1D01G314900 chr4D 447980739 447981375 636 True 898.0 898 92.320000 3197 3826 1 chr4D.!!$R2 629
8 TraesCS1D01G314900 chr6A 562939746 562942671 2925 False 671.0 791 83.812667 2861 4279 3 chr6A.!!$F2 1418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 644 0.953471 TTCGGTCGTTGATGGCTTGG 60.953 55.000 0.00 0.00 0.00 3.61 F
914 1071 1.080705 CTTTCCTTGCTGCTGCTGC 60.081 57.895 22.51 22.51 40.48 5.25 F
974 1131 1.322442 GGCAGGTCAAAACAGCTTCT 58.678 50.000 0.00 0.00 0.00 2.85 F
1655 1812 1.354506 GATGCAACGATGAGCAGGC 59.645 57.895 0.00 0.00 44.94 4.85 F
2121 2279 4.084328 GCATAACGCTCATTCTGACCATAC 60.084 45.833 0.00 0.00 37.77 2.39 F
3833 4235 4.286297 TGGAAATCAACTACACCCTCAG 57.714 45.455 0.00 0.00 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1561 0.753111 GGGTGGATGATGCTTGGGTC 60.753 60.000 0.00 0.0 0.00 4.46 R
1751 1908 1.221840 GGCTCTTCAAGGATGCGGA 59.778 57.895 0.00 0.0 0.00 5.54 R
2121 2279 3.127548 GCCAACAACTCATGACATACTGG 59.872 47.826 0.00 0.0 0.00 4.00 R
3492 3716 1.976045 GCAACGCCAACTTCAAATACG 59.024 47.619 0.00 0.0 0.00 3.06 R
4249 4747 1.142870 TCCAGTGTTCCCTTCAGTTGG 59.857 52.381 0.00 0.0 0.00 3.77 R
5193 6198 0.036105 ACGGTCCGACCCATAAAACC 60.036 55.000 20.51 0.0 33.75 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 106 1.954362 CTGAAGGCCTCGTCTGGGAG 61.954 65.000 5.23 0.00 0.00 4.30
96 107 1.985116 GAAGGCCTCGTCTGGGAGT 60.985 63.158 5.23 0.00 31.98 3.85
97 108 1.950973 GAAGGCCTCGTCTGGGAGTC 61.951 65.000 5.23 0.00 31.98 3.36
98 109 2.363147 GGCCTCGTCTGGGAGTCT 60.363 66.667 0.00 0.00 31.98 3.24
99 110 2.716017 GGCCTCGTCTGGGAGTCTG 61.716 68.421 0.00 0.00 31.98 3.51
100 111 2.716017 GCCTCGTCTGGGAGTCTGG 61.716 68.421 0.00 0.00 31.98 3.86
219 236 3.556038 TTCCCTTCTCTCCCCCGCA 62.556 63.158 0.00 0.00 0.00 5.69
298 331 4.090588 GATTCCGTGCGTCCCCCA 62.091 66.667 0.00 0.00 0.00 4.96
467 500 2.007608 GGCGTCACCAGGTAAAGATTC 58.992 52.381 0.00 0.00 38.86 2.52
493 526 5.483811 TGCTCCACGTCACTATTTGATTTA 58.516 37.500 0.00 0.00 36.32 1.40
505 538 9.340695 TCACTATTTGATTTATTTTGTTCTGCG 57.659 29.630 0.00 0.00 0.00 5.18
547 583 6.073276 TGTCTATTTCTTGTTGATGAACCGTG 60.073 38.462 0.00 0.00 0.00 4.94
594 644 0.953471 TTCGGTCGTTGATGGCTTGG 60.953 55.000 0.00 0.00 0.00 3.61
660 809 6.916360 ATGACCCTTTAATCTTGCAAGAAA 57.084 33.333 31.55 19.88 38.77 2.52
661 810 6.331369 TGACCCTTTAATCTTGCAAGAAAG 57.669 37.500 31.55 26.94 38.77 2.62
686 842 4.325028 TGCAATTATGTTGATGATGCCC 57.675 40.909 0.00 0.00 0.00 5.36
745 901 8.057536 AGTTTACCTGTGTGTTTTGATTGTAA 57.942 30.769 0.00 0.00 0.00 2.41
746 902 8.524487 AGTTTACCTGTGTGTTTTGATTGTAAA 58.476 29.630 0.00 0.00 0.00 2.01
747 903 9.308318 GTTTACCTGTGTGTTTTGATTGTAAAT 57.692 29.630 0.00 0.00 31.00 1.40
749 905 7.769272 ACCTGTGTGTTTTGATTGTAAATTG 57.231 32.000 0.00 0.00 0.00 2.32
751 907 7.491048 ACCTGTGTGTTTTGATTGTAAATTGTC 59.509 33.333 0.00 0.00 0.00 3.18
752 908 7.706179 CCTGTGTGTTTTGATTGTAAATTGTCT 59.294 33.333 0.00 0.00 0.00 3.41
758 915 9.689976 TGTTTTGATTGTAAATTGTCTGGTATG 57.310 29.630 0.00 0.00 0.00 2.39
761 918 7.624360 TGATTGTAAATTGTCTGGTATGTCC 57.376 36.000 0.00 0.00 0.00 4.02
788 945 3.440173 CACGGCAAAATGGACTGATAAGT 59.560 43.478 0.00 0.00 0.00 2.24
797 954 4.877378 TGGACTGATAAGTTGTTACGGT 57.123 40.909 0.00 0.00 0.00 4.83
808 965 4.062991 AGTTGTTACGGTGCCTTAGAAAG 58.937 43.478 0.00 0.00 0.00 2.62
914 1071 1.080705 CTTTCCTTGCTGCTGCTGC 60.081 57.895 22.51 22.51 40.48 5.25
915 1072 1.524863 CTTTCCTTGCTGCTGCTGCT 61.525 55.000 27.67 0.00 40.48 4.24
916 1073 1.802337 TTTCCTTGCTGCTGCTGCTG 61.802 55.000 27.67 20.35 40.48 4.41
974 1131 1.322442 GGCAGGTCAAAACAGCTTCT 58.678 50.000 0.00 0.00 0.00 2.85
1025 1182 6.417258 TGATTGATGATGAGGCTAACTTTGA 58.583 36.000 0.00 0.00 0.00 2.69
1034 1191 4.184629 GAGGCTAACTTTGACGACATCAT 58.815 43.478 0.00 0.00 37.11 2.45
1099 1256 4.982701 AGCTGCGGGGCAAGCTTT 62.983 61.111 0.00 0.00 38.90 3.51
1205 1362 7.939039 TCAAGATAATTTGTCTCAAGGACTTGT 59.061 33.333 11.44 0.00 44.74 3.16
1217 1374 4.994852 TCAAGGACTTGTTACGAATCAAGG 59.005 41.667 11.44 5.05 43.40 3.61
1404 1561 5.807011 CCAAGAAAACTTGGTTGTTTCAGAG 59.193 40.000 17.58 0.00 46.45 3.35
1655 1812 1.354506 GATGCAACGATGAGCAGGC 59.645 57.895 0.00 0.00 44.94 4.85
1678 1835 5.426504 CACAAGCTCCTAGACATGAAGAAT 58.573 41.667 0.00 0.00 0.00 2.40
1751 1908 6.183360 ACAGTTGACAATTTCGTTAACCACAT 60.183 34.615 0.00 0.00 36.35 3.21
2032 2190 6.377080 TCCTCATACTGATGATACTCAACCT 58.623 40.000 0.00 0.00 41.33 3.50
2121 2279 4.084328 GCATAACGCTCATTCTGACCATAC 60.084 45.833 0.00 0.00 37.77 2.39
2290 2448 6.162777 GGCAAAGGCAAATCAGTAACATTTA 58.837 36.000 0.00 0.00 43.71 1.40
3020 3179 5.848833 ACAACGGTACCCAAATAACAAAA 57.151 34.783 6.25 0.00 0.00 2.44
3833 4235 4.286297 TGGAAATCAACTACACCCTCAG 57.714 45.455 0.00 0.00 0.00 3.35
3842 4244 6.752168 TCAACTACACCCTCAGTAACTTAAC 58.248 40.000 0.00 0.00 0.00 2.01
3849 4254 7.384477 ACACCCTCAGTAACTTAACATAAGAC 58.616 38.462 4.24 0.00 0.00 3.01
4249 4747 3.584834 ACACAAAAACAAGAGGTTGCAC 58.415 40.909 0.00 0.00 40.35 4.57
4499 5093 1.604593 CAACCCTGTGAGCCAAGGG 60.605 63.158 6.19 6.19 46.64 3.95
4516 5110 3.627395 AGGGCATGTTCTATGTCGAAA 57.373 42.857 0.00 0.00 0.00 3.46
4517 5113 4.156455 AGGGCATGTTCTATGTCGAAAT 57.844 40.909 0.00 0.00 0.00 2.17
4520 5116 5.036737 GGGCATGTTCTATGTCGAAATTTG 58.963 41.667 0.00 0.00 0.00 2.32
4527 5123 5.203358 TCTATGTCGAAATTTGTTGCTCG 57.797 39.130 0.00 0.00 0.00 5.03
4529 5125 1.332065 TGTCGAAATTTGTTGCTCGCA 59.668 42.857 0.00 0.00 0.00 5.10
4555 5151 1.192793 GCGAGTTAGTGATGCGAGAC 58.807 55.000 0.00 0.00 0.00 3.36
4565 5161 2.578664 TGCGAGACACGGATGCAT 59.421 55.556 0.00 0.00 42.83 3.96
4651 5247 7.494625 TCTTGAGTAGTGTTGGTTTTTCTAGTG 59.505 37.037 0.00 0.00 0.00 2.74
4654 5250 8.259411 TGAGTAGTGTTGGTTTTTCTAGTGTTA 58.741 33.333 0.00 0.00 0.00 2.41
4692 5288 4.993584 TCTCTCTCAAATGTTGCTGAAGTC 59.006 41.667 0.00 0.00 0.00 3.01
4701 5297 2.146342 GTTGCTGAAGTCTGCTGCTTA 58.854 47.619 10.77 0.00 40.79 3.09
4718 5314 3.131223 TGCTTAGTGATGTCTCCTGCTAC 59.869 47.826 0.00 0.00 0.00 3.58
4743 5339 2.110627 GCTGATGGCGGCTCTCAT 59.889 61.111 11.43 0.00 43.23 2.90
4753 5349 1.467035 GCGGCTCTCATTTTGCTTCTG 60.467 52.381 0.00 0.00 0.00 3.02
4823 5419 2.863704 GCCTATCAAATGAATTGCCCGC 60.864 50.000 0.00 0.00 38.98 6.13
4824 5420 2.624838 CCTATCAAATGAATTGCCCGCT 59.375 45.455 0.00 0.00 38.98 5.52
4825 5421 3.068590 CCTATCAAATGAATTGCCCGCTT 59.931 43.478 0.00 0.00 38.98 4.68
4867 5472 8.822805 TCTTACAGGGTCTCAAAATGTATAGTT 58.177 33.333 0.00 0.00 0.00 2.24
4884 5489 8.352752 TGTATAGTTTACAGATGAGCATTTCG 57.647 34.615 0.00 0.00 0.00 3.46
4949 5719 3.986996 AAGGGGGAAATGCAAATCAAG 57.013 42.857 0.00 0.00 0.00 3.02
4951 5721 2.833943 AGGGGGAAATGCAAATCAAGTC 59.166 45.455 0.00 0.00 0.00 3.01
4981 5751 5.542779 ACTGTGTCCAATCAGACTTAGTTC 58.457 41.667 0.00 0.00 37.66 3.01
4990 5760 6.423905 CCAATCAGACTTAGTTCTTCGTTTGA 59.576 38.462 0.00 0.00 0.00 2.69
5017 5787 7.044510 CGAATTGCTACTTTATGTTGATGCAAG 60.045 37.037 0.00 0.00 41.41 4.01
5071 6076 9.733556 TGTTACCTAACATCAATTGTATCAAGT 57.266 29.630 5.13 0.00 40.93 3.16
5073 6078 7.539712 ACCTAACATCAATTGTATCAAGTCG 57.460 36.000 5.13 0.00 37.68 4.18
5074 6079 6.037172 ACCTAACATCAATTGTATCAAGTCGC 59.963 38.462 5.13 0.00 37.68 5.19
5075 6080 6.258727 CCTAACATCAATTGTATCAAGTCGCT 59.741 38.462 5.13 0.00 37.68 4.93
5076 6081 5.725110 ACATCAATTGTATCAAGTCGCTC 57.275 39.130 5.13 0.00 36.57 5.03
5077 6082 4.572389 ACATCAATTGTATCAAGTCGCTCC 59.428 41.667 5.13 0.00 36.57 4.70
5079 6084 4.183865 TCAATTGTATCAAGTCGCTCCAG 58.816 43.478 5.13 0.00 0.00 3.86
5080 6085 3.895232 ATTGTATCAAGTCGCTCCAGT 57.105 42.857 0.00 0.00 0.00 4.00
5081 6086 5.105513 TCAATTGTATCAAGTCGCTCCAGTA 60.106 40.000 5.13 0.00 0.00 2.74
5082 6087 5.537300 ATTGTATCAAGTCGCTCCAGTAT 57.463 39.130 0.00 0.00 0.00 2.12
5083 6088 4.307443 TGTATCAAGTCGCTCCAGTATG 57.693 45.455 0.00 0.00 0.00 2.39
5084 6089 3.699538 TGTATCAAGTCGCTCCAGTATGT 59.300 43.478 0.00 0.00 0.00 2.29
5096 6101 3.575965 CCAGTATGTGGTTTTTCCTGC 57.424 47.619 0.00 0.00 42.17 4.85
5097 6102 3.157087 CCAGTATGTGGTTTTTCCTGCT 58.843 45.455 0.00 0.00 42.17 4.24
5101 6106 5.473504 CAGTATGTGGTTTTTCCTGCTAGTT 59.526 40.000 0.00 0.00 37.07 2.24
5103 6108 4.164843 TGTGGTTTTTCCTGCTAGTTCT 57.835 40.909 0.00 0.00 37.07 3.01
5104 6109 3.882888 TGTGGTTTTTCCTGCTAGTTCTG 59.117 43.478 0.00 0.00 37.07 3.02
5106 6111 4.023963 GTGGTTTTTCCTGCTAGTTCTGAC 60.024 45.833 0.00 0.00 37.07 3.51
5108 6113 4.023963 GGTTTTTCCTGCTAGTTCTGACAC 60.024 45.833 0.00 0.00 0.00 3.67
5110 6115 3.667497 TTCCTGCTAGTTCTGACACAG 57.333 47.619 0.00 0.00 0.00 3.66
5111 6116 1.273606 TCCTGCTAGTTCTGACACAGC 59.726 52.381 0.00 0.00 36.91 4.40
5113 6118 2.354503 CCTGCTAGTTCTGACACAGCAT 60.355 50.000 6.69 0.00 41.93 3.79
5114 6119 3.332919 CTGCTAGTTCTGACACAGCATT 58.667 45.455 6.69 0.00 41.93 3.56
5115 6120 3.743521 TGCTAGTTCTGACACAGCATTT 58.256 40.909 3.00 0.00 39.61 2.32
5116 6121 4.136796 TGCTAGTTCTGACACAGCATTTT 58.863 39.130 3.00 0.00 39.61 1.82
5118 6123 5.149977 GCTAGTTCTGACACAGCATTTTTC 58.850 41.667 0.00 0.00 36.59 2.29
5120 6125 3.627577 AGTTCTGACACAGCATTTTTCGT 59.372 39.130 0.00 0.00 0.00 3.85
5121 6126 3.878086 TCTGACACAGCATTTTTCGTC 57.122 42.857 0.00 0.00 0.00 4.20
5122 6127 2.548057 TCTGACACAGCATTTTTCGTCC 59.452 45.455 0.00 0.00 0.00 4.79
5123 6128 1.262950 TGACACAGCATTTTTCGTCCG 59.737 47.619 0.00 0.00 0.00 4.79
5124 6129 0.040425 ACACAGCATTTTTCGTCCGC 60.040 50.000 0.00 0.00 0.00 5.54
5125 6130 0.238289 CACAGCATTTTTCGTCCGCT 59.762 50.000 0.00 0.00 0.00 5.52
5126 6131 0.517316 ACAGCATTTTTCGTCCGCTC 59.483 50.000 0.00 0.00 0.00 5.03
5127 6132 0.516877 CAGCATTTTTCGTCCGCTCA 59.483 50.000 0.00 0.00 0.00 4.26
5129 6134 0.179189 GCATTTTTCGTCCGCTCAGG 60.179 55.000 0.00 0.00 42.97 3.86
5130 6135 0.447801 CATTTTTCGTCCGCTCAGGG 59.552 55.000 0.00 0.00 41.52 4.45
5132 6137 3.894547 TTTTCGTCCGCTCAGGGGC 62.895 63.158 1.86 0.00 41.52 5.80
5155 6160 4.569180 CCCATGTAGGCGGCCCTG 62.569 72.222 17.02 8.38 42.90 4.45
5160 6165 4.410400 GTAGGCGGCCCTGCAACT 62.410 66.667 17.02 0.00 42.77 3.16
5161 6166 3.646715 TAGGCGGCCCTGCAACTT 61.647 61.111 17.02 0.00 42.90 2.66
5162 6167 2.294839 TAGGCGGCCCTGCAACTTA 61.295 57.895 17.02 0.00 42.90 2.24
5163 6168 1.843462 TAGGCGGCCCTGCAACTTAA 61.843 55.000 17.02 0.00 42.90 1.85
5164 6169 2.272447 GGCGGCCCTGCAACTTAAA 61.272 57.895 8.12 0.00 36.28 1.52
5165 6170 1.663173 GCGGCCCTGCAACTTAAAA 59.337 52.632 0.00 0.00 34.15 1.52
5166 6171 0.246360 GCGGCCCTGCAACTTAAAAT 59.754 50.000 0.00 0.00 34.15 1.82
5167 6172 1.474879 GCGGCCCTGCAACTTAAAATA 59.525 47.619 0.00 0.00 34.15 1.40
5168 6173 2.734175 GCGGCCCTGCAACTTAAAATAC 60.734 50.000 0.00 0.00 34.15 1.89
5169 6174 2.159296 CGGCCCTGCAACTTAAAATACC 60.159 50.000 0.00 0.00 0.00 2.73
5170 6175 2.159296 GGCCCTGCAACTTAAAATACCG 60.159 50.000 0.00 0.00 0.00 4.02
5171 6176 2.750712 GCCCTGCAACTTAAAATACCGA 59.249 45.455 0.00 0.00 0.00 4.69
5172 6177 3.191791 GCCCTGCAACTTAAAATACCGAA 59.808 43.478 0.00 0.00 0.00 4.30
5173 6178 4.142249 GCCCTGCAACTTAAAATACCGAAT 60.142 41.667 0.00 0.00 0.00 3.34
5174 6179 5.066764 GCCCTGCAACTTAAAATACCGAATA 59.933 40.000 0.00 0.00 0.00 1.75
5175 6180 6.725246 CCCTGCAACTTAAAATACCGAATAG 58.275 40.000 0.00 0.00 0.00 1.73
5188 6193 2.893637 CCGAATAGGTGAGGTTGTCAG 58.106 52.381 0.00 0.00 35.13 3.51
5189 6194 2.233922 CCGAATAGGTGAGGTTGTCAGT 59.766 50.000 0.00 0.00 35.13 3.41
5190 6195 3.306780 CCGAATAGGTGAGGTTGTCAGTT 60.307 47.826 0.00 0.00 35.13 3.16
5191 6196 4.315803 CGAATAGGTGAGGTTGTCAGTTT 58.684 43.478 0.00 0.00 35.13 2.66
5192 6197 5.475719 CGAATAGGTGAGGTTGTCAGTTTA 58.524 41.667 0.00 0.00 35.13 2.01
5193 6198 5.577164 CGAATAGGTGAGGTTGTCAGTTTAG 59.423 44.000 0.00 0.00 35.13 1.85
5194 6199 3.771577 AGGTGAGGTTGTCAGTTTAGG 57.228 47.619 0.00 0.00 35.13 2.69
5195 6200 3.046374 AGGTGAGGTTGTCAGTTTAGGT 58.954 45.455 0.00 0.00 35.13 3.08
5196 6201 3.458487 AGGTGAGGTTGTCAGTTTAGGTT 59.542 43.478 0.00 0.00 35.13 3.50
5197 6202 4.079958 AGGTGAGGTTGTCAGTTTAGGTTT 60.080 41.667 0.00 0.00 35.13 3.27
5198 6203 4.643334 GGTGAGGTTGTCAGTTTAGGTTTT 59.357 41.667 0.00 0.00 35.13 2.43
5199 6204 5.824097 GGTGAGGTTGTCAGTTTAGGTTTTA 59.176 40.000 0.00 0.00 35.13 1.52
5200 6205 6.489022 GGTGAGGTTGTCAGTTTAGGTTTTAT 59.511 38.462 0.00 0.00 35.13 1.40
5201 6206 7.360361 GTGAGGTTGTCAGTTTAGGTTTTATG 58.640 38.462 0.00 0.00 35.13 1.90
5202 6207 6.488683 TGAGGTTGTCAGTTTAGGTTTTATGG 59.511 38.462 0.00 0.00 0.00 2.74
5203 6208 5.773176 AGGTTGTCAGTTTAGGTTTTATGGG 59.227 40.000 0.00 0.00 0.00 4.00
5204 6209 5.537295 GGTTGTCAGTTTAGGTTTTATGGGT 59.463 40.000 0.00 0.00 0.00 4.51
5205 6210 6.294342 GGTTGTCAGTTTAGGTTTTATGGGTC 60.294 42.308 0.00 0.00 0.00 4.46
5206 6211 4.998672 TGTCAGTTTAGGTTTTATGGGTCG 59.001 41.667 0.00 0.00 0.00 4.79
5207 6212 4.393990 GTCAGTTTAGGTTTTATGGGTCGG 59.606 45.833 0.00 0.00 0.00 4.79
5208 6213 4.286549 TCAGTTTAGGTTTTATGGGTCGGA 59.713 41.667 0.00 0.00 0.00 4.55
5209 6214 4.393990 CAGTTTAGGTTTTATGGGTCGGAC 59.606 45.833 0.00 0.00 0.00 4.79
5210 6215 3.632643 TTAGGTTTTATGGGTCGGACC 57.367 47.619 19.06 19.06 37.60 4.46
5211 6216 0.251073 AGGTTTTATGGGTCGGACCG 59.749 55.000 20.35 7.84 39.83 4.79
5212 6217 0.036105 GGTTTTATGGGTCGGACCGT 60.036 55.000 20.35 13.92 39.83 4.83
5213 6218 1.362768 GTTTTATGGGTCGGACCGTC 58.637 55.000 20.35 8.37 39.83 4.79
5214 6219 0.108709 TTTTATGGGTCGGACCGTCG 60.109 55.000 20.35 0.00 39.83 5.12
5215 6220 1.947597 TTTATGGGTCGGACCGTCGG 61.948 60.000 20.35 10.48 39.83 4.79
5216 6221 3.643595 TATGGGTCGGACCGTCGGT 62.644 63.158 18.94 18.94 39.83 4.69
5218 6223 3.994853 GGGTCGGACCGTCGGTTT 61.995 66.667 19.95 0.00 39.83 3.27
5219 6224 2.635443 GGGTCGGACCGTCGGTTTA 61.635 63.158 19.95 4.21 39.83 2.01
5220 6225 1.512694 GGTCGGACCGTCGGTTTAT 59.487 57.895 19.95 0.00 35.25 1.40
5221 6226 0.108662 GGTCGGACCGTCGGTTTATT 60.109 55.000 19.95 0.00 35.25 1.40
5222 6227 0.994263 GTCGGACCGTCGGTTTATTG 59.006 55.000 19.95 7.13 35.25 1.90
5223 6228 0.108709 TCGGACCGTCGGTTTATTGG 60.109 55.000 19.95 4.82 35.25 3.16
5224 6229 0.390209 CGGACCGTCGGTTTATTGGT 60.390 55.000 19.95 0.00 35.25 3.67
5225 6230 1.812235 GGACCGTCGGTTTATTGGTT 58.188 50.000 19.95 0.00 35.25 3.67
5226 6231 1.733912 GGACCGTCGGTTTATTGGTTC 59.266 52.381 19.95 1.62 35.25 3.62
5227 6232 2.415776 GACCGTCGGTTTATTGGTTCA 58.584 47.619 19.95 0.00 35.25 3.18
5228 6233 2.145536 ACCGTCGGTTTATTGGTTCAC 58.854 47.619 12.23 0.00 27.29 3.18
5229 6234 2.224354 ACCGTCGGTTTATTGGTTCACT 60.224 45.455 12.23 0.00 27.29 3.41
5230 6235 2.809696 CCGTCGGTTTATTGGTTCACTT 59.190 45.455 2.08 0.00 0.00 3.16
5231 6236 3.251487 CCGTCGGTTTATTGGTTCACTTT 59.749 43.478 2.08 0.00 0.00 2.66
5232 6237 4.215965 CGTCGGTTTATTGGTTCACTTTG 58.784 43.478 0.00 0.00 0.00 2.77
5233 6238 3.978855 GTCGGTTTATTGGTTCACTTTGC 59.021 43.478 0.00 0.00 0.00 3.68
5234 6239 2.977169 CGGTTTATTGGTTCACTTTGCG 59.023 45.455 0.00 0.00 0.00 4.85
5235 6240 3.304123 CGGTTTATTGGTTCACTTTGCGA 60.304 43.478 0.00 0.00 0.00 5.10
5236 6241 4.614993 CGGTTTATTGGTTCACTTTGCGAT 60.615 41.667 0.00 0.00 0.00 4.58
5237 6242 5.391097 CGGTTTATTGGTTCACTTTGCGATA 60.391 40.000 0.00 0.00 0.00 2.92
5238 6243 6.383415 GGTTTATTGGTTCACTTTGCGATAA 58.617 36.000 0.00 0.00 0.00 1.75
5239 6244 6.864165 GGTTTATTGGTTCACTTTGCGATAAA 59.136 34.615 0.00 0.00 0.00 1.40
5240 6245 7.382759 GGTTTATTGGTTCACTTTGCGATAAAA 59.617 33.333 0.00 0.00 0.00 1.52
5241 6246 8.756864 GTTTATTGGTTCACTTTGCGATAAAAA 58.243 29.630 0.00 0.00 0.00 1.94
5278 6283 9.589111 TTAAGGTAGTTTTTCACAAATTTGACC 57.411 29.630 24.64 16.53 0.00 4.02
5279 6284 7.418337 AGGTAGTTTTTCACAAATTTGACCT 57.582 32.000 24.64 18.33 0.00 3.85
5280 6285 7.489160 AGGTAGTTTTTCACAAATTTGACCTC 58.511 34.615 24.64 7.93 0.00 3.85
5281 6286 7.123547 AGGTAGTTTTTCACAAATTTGACCTCA 59.876 33.333 24.64 2.91 0.00 3.86
5282 6287 7.222031 GGTAGTTTTTCACAAATTTGACCTCAC 59.778 37.037 24.64 12.58 0.00 3.51
5283 6288 6.696411 AGTTTTTCACAAATTTGACCTCACA 58.304 32.000 24.64 0.42 0.00 3.58
5284 6289 7.330262 AGTTTTTCACAAATTTGACCTCACAT 58.670 30.769 24.64 2.45 0.00 3.21
5285 6290 7.492344 AGTTTTTCACAAATTTGACCTCACATC 59.508 33.333 24.64 7.15 0.00 3.06
5286 6291 6.462552 TTTCACAAATTTGACCTCACATCA 57.537 33.333 24.64 0.00 0.00 3.07
5287 6292 6.462552 TTCACAAATTTGACCTCACATCAA 57.537 33.333 24.64 0.00 34.27 2.57
5288 6293 6.653526 TCACAAATTTGACCTCACATCAAT 57.346 33.333 24.64 0.00 36.02 2.57
5289 6294 7.757941 TCACAAATTTGACCTCACATCAATA 57.242 32.000 24.64 0.00 36.02 1.90
5290 6295 7.592938 TCACAAATTTGACCTCACATCAATAC 58.407 34.615 24.64 0.00 36.02 1.89
5291 6296 7.230309 TCACAAATTTGACCTCACATCAATACA 59.770 33.333 24.64 0.00 36.02 2.29
5292 6297 7.326789 CACAAATTTGACCTCACATCAATACAC 59.673 37.037 24.64 0.00 36.02 2.90
5293 6298 7.014134 ACAAATTTGACCTCACATCAATACACA 59.986 33.333 24.64 0.00 36.02 3.72
5294 6299 7.707624 AATTTGACCTCACATCAATACACAT 57.292 32.000 0.00 0.00 36.02 3.21
5295 6300 8.806429 AATTTGACCTCACATCAATACACATA 57.194 30.769 0.00 0.00 36.02 2.29
5296 6301 8.806429 ATTTGACCTCACATCAATACACATAA 57.194 30.769 0.00 0.00 36.02 1.90
5297 6302 7.609760 TTGACCTCACATCAATACACATAAC 57.390 36.000 0.00 0.00 31.11 1.89
5298 6303 6.706295 TGACCTCACATCAATACACATAACA 58.294 36.000 0.00 0.00 0.00 2.41
5299 6304 7.337938 TGACCTCACATCAATACACATAACAT 58.662 34.615 0.00 0.00 0.00 2.71
5300 6305 7.828717 TGACCTCACATCAATACACATAACATT 59.171 33.333 0.00 0.00 0.00 2.71
5301 6306 8.579850 ACCTCACATCAATACACATAACATTT 57.420 30.769 0.00 0.00 0.00 2.32
5302 6307 9.679661 ACCTCACATCAATACACATAACATTTA 57.320 29.630 0.00 0.00 0.00 1.40
5344 6349 9.694137 AAATGACAAAGTGTTACTAGTCTACTC 57.306 33.333 0.00 0.35 35.61 2.59
5345 6350 7.211966 TGACAAAGTGTTACTAGTCTACTCC 57.788 40.000 0.00 0.00 35.61 3.85
5346 6351 6.208204 TGACAAAGTGTTACTAGTCTACTCCC 59.792 42.308 0.00 0.00 35.61 4.30
5347 6352 6.313324 ACAAAGTGTTACTAGTCTACTCCCT 58.687 40.000 0.00 0.00 0.00 4.20
5348 6353 6.433716 ACAAAGTGTTACTAGTCTACTCCCTC 59.566 42.308 0.00 0.00 0.00 4.30
5349 6354 5.114764 AGTGTTACTAGTCTACTCCCTCC 57.885 47.826 0.00 0.00 0.00 4.30
5350 6355 4.789702 AGTGTTACTAGTCTACTCCCTCCT 59.210 45.833 0.00 0.00 0.00 3.69
5351 6356 5.253564 AGTGTTACTAGTCTACTCCCTCCTT 59.746 44.000 0.00 0.00 0.00 3.36
5352 6357 5.951148 GTGTTACTAGTCTACTCCCTCCTTT 59.049 44.000 0.00 0.00 0.00 3.11
5353 6358 6.095300 GTGTTACTAGTCTACTCCCTCCTTTC 59.905 46.154 0.00 0.00 0.00 2.62
5354 6359 4.254039 ACTAGTCTACTCCCTCCTTTCC 57.746 50.000 0.00 0.00 0.00 3.13
5355 6360 2.146920 AGTCTACTCCCTCCTTTCCG 57.853 55.000 0.00 0.00 0.00 4.30
5356 6361 1.112950 GTCTACTCCCTCCTTTCCGG 58.887 60.000 0.00 0.00 0.00 5.14
5357 6362 0.708802 TCTACTCCCTCCTTTCCGGT 59.291 55.000 0.00 0.00 0.00 5.28
5358 6363 1.078324 TCTACTCCCTCCTTTCCGGTT 59.922 52.381 0.00 0.00 0.00 4.44
5359 6364 1.907255 CTACTCCCTCCTTTCCGGTTT 59.093 52.381 0.00 0.00 0.00 3.27
5360 6365 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
5361 6366 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
5362 6367 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
5363 6368 4.106324 ACTCCCTCCTTTCCGGTTTATAA 58.894 43.478 0.00 0.00 0.00 0.98
5364 6369 4.537288 ACTCCCTCCTTTCCGGTTTATAAA 59.463 41.667 0.00 0.00 0.00 1.40
5365 6370 5.106876 TCCCTCCTTTCCGGTTTATAAAG 57.893 43.478 0.00 3.23 0.00 1.85
5366 6371 3.630769 CCCTCCTTTCCGGTTTATAAAGC 59.369 47.826 15.85 15.85 0.00 3.51
5367 6372 4.524053 CCTCCTTTCCGGTTTATAAAGCT 58.476 43.478 21.54 0.00 34.41 3.74
5368 6373 4.575236 CCTCCTTTCCGGTTTATAAAGCTC 59.425 45.833 21.54 1.45 34.41 4.09
5369 6374 5.168647 TCCTTTCCGGTTTATAAAGCTCA 57.831 39.130 21.54 8.08 34.41 4.26
5370 6375 5.562635 TCCTTTCCGGTTTATAAAGCTCAA 58.437 37.500 21.54 12.71 34.41 3.02
5371 6376 6.184789 TCCTTTCCGGTTTATAAAGCTCAAT 58.815 36.000 21.54 0.00 34.41 2.57
5372 6377 6.661805 TCCTTTCCGGTTTATAAAGCTCAATT 59.338 34.615 21.54 0.00 34.41 2.32
5373 6378 7.177744 TCCTTTCCGGTTTATAAAGCTCAATTT 59.822 33.333 21.54 0.00 34.41 1.82
5374 6379 8.463607 CCTTTCCGGTTTATAAAGCTCAATTTA 58.536 33.333 21.54 3.99 34.41 1.40
5375 6380 9.849166 CTTTCCGGTTTATAAAGCTCAATTTAA 57.151 29.630 21.54 8.11 34.41 1.52
5388 6393 8.593492 AAGCTCAATTTAAAAATCTCACCAAC 57.407 30.769 0.00 0.00 0.00 3.77
5389 6394 7.154656 AGCTCAATTTAAAAATCTCACCAACC 58.845 34.615 0.00 0.00 0.00 3.77
5390 6395 6.928492 GCTCAATTTAAAAATCTCACCAACCA 59.072 34.615 0.00 0.00 0.00 3.67
5391 6396 7.440856 GCTCAATTTAAAAATCTCACCAACCAA 59.559 33.333 0.00 0.00 0.00 3.67
5392 6397 8.885494 TCAATTTAAAAATCTCACCAACCAAG 57.115 30.769 0.00 0.00 0.00 3.61
5393 6398 7.930865 TCAATTTAAAAATCTCACCAACCAAGG 59.069 33.333 0.00 0.00 0.00 3.61
5394 6399 6.800072 TTTAAAAATCTCACCAACCAAGGT 57.200 33.333 0.00 0.00 44.48 3.50
5395 6400 7.899648 TTTAAAAATCTCACCAACCAAGGTA 57.100 32.000 0.00 0.00 40.77 3.08
5396 6401 7.519032 TTAAAAATCTCACCAACCAAGGTAG 57.481 36.000 0.00 0.00 40.77 3.18
5397 6402 4.993705 AAATCTCACCAACCAAGGTAGA 57.006 40.909 0.00 0.00 40.77 2.59
5398 6403 5.520748 AAATCTCACCAACCAAGGTAGAT 57.479 39.130 0.00 0.00 40.77 1.98
5399 6404 3.981071 TCTCACCAACCAAGGTAGATG 57.019 47.619 0.00 0.00 40.77 2.90
5400 6405 2.571653 TCTCACCAACCAAGGTAGATGG 59.428 50.000 6.86 6.86 40.77 3.51
5407 6412 2.698855 CCAAGGTAGATGGTGAGTGG 57.301 55.000 0.00 0.00 33.08 4.00
5408 6413 1.909302 CCAAGGTAGATGGTGAGTGGT 59.091 52.381 0.00 0.00 33.08 4.16
5409 6414 2.355108 CCAAGGTAGATGGTGAGTGGTG 60.355 54.545 0.00 0.00 33.08 4.17
5410 6415 1.573108 AGGTAGATGGTGAGTGGTGG 58.427 55.000 0.00 0.00 0.00 4.61
5411 6416 1.078823 AGGTAGATGGTGAGTGGTGGA 59.921 52.381 0.00 0.00 0.00 4.02
5412 6417 1.906574 GGTAGATGGTGAGTGGTGGAA 59.093 52.381 0.00 0.00 0.00 3.53
5413 6418 2.505819 GGTAGATGGTGAGTGGTGGAAT 59.494 50.000 0.00 0.00 0.00 3.01
5414 6419 3.709653 GGTAGATGGTGAGTGGTGGAATA 59.290 47.826 0.00 0.00 0.00 1.75
5415 6420 3.914426 AGATGGTGAGTGGTGGAATAC 57.086 47.619 0.00 0.00 0.00 1.89
5416 6421 3.454858 AGATGGTGAGTGGTGGAATACT 58.545 45.455 0.00 0.00 0.00 2.12
5417 6422 3.846588 AGATGGTGAGTGGTGGAATACTT 59.153 43.478 0.00 0.00 0.00 2.24
5418 6423 4.289672 AGATGGTGAGTGGTGGAATACTTT 59.710 41.667 0.00 0.00 0.00 2.66
5419 6424 4.447138 TGGTGAGTGGTGGAATACTTTT 57.553 40.909 0.00 0.00 0.00 2.27
5420 6425 4.798882 TGGTGAGTGGTGGAATACTTTTT 58.201 39.130 0.00 0.00 0.00 1.94
5421 6426 4.582656 TGGTGAGTGGTGGAATACTTTTTG 59.417 41.667 0.00 0.00 0.00 2.44
5422 6427 4.583073 GGTGAGTGGTGGAATACTTTTTGT 59.417 41.667 0.00 0.00 0.00 2.83
5423 6428 5.766174 GGTGAGTGGTGGAATACTTTTTGTA 59.234 40.000 0.00 0.00 35.37 2.41
5424 6429 6.433093 GGTGAGTGGTGGAATACTTTTTGTAT 59.567 38.462 0.00 0.00 43.19 2.29
5425 6430 7.608761 GGTGAGTGGTGGAATACTTTTTGTATA 59.391 37.037 0.00 0.00 40.69 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 106 4.098847 ACGGAGTCCAGACCAGAC 57.901 61.111 10.49 0.00 29.74 3.51
202 219 3.984186 CTGCGGGGGAGAGAAGGGA 62.984 68.421 0.00 0.00 0.00 4.20
231 248 4.228567 GCAGGGAGGCTACGAGGC 62.229 72.222 0.00 0.00 41.73 4.70
269 302 2.108362 GGAATCGGTAGGCGGTGG 59.892 66.667 0.00 0.00 0.00 4.61
270 303 2.279252 CGGAATCGGTAGGCGGTG 60.279 66.667 0.00 0.00 0.00 4.94
271 304 2.757099 ACGGAATCGGTAGGCGGT 60.757 61.111 0.00 0.00 41.39 5.68
272 305 2.279252 CACGGAATCGGTAGGCGG 60.279 66.667 0.00 0.00 41.39 6.13
273 306 2.960129 GCACGGAATCGGTAGGCG 60.960 66.667 0.00 0.00 41.39 5.52
274 307 2.960129 CGCACGGAATCGGTAGGC 60.960 66.667 0.00 0.00 41.39 3.93
275 308 1.588139 GACGCACGGAATCGGTAGG 60.588 63.158 0.00 0.00 41.39 3.18
467 500 3.684305 TCAAATAGTGACGTGGAGCATTG 59.316 43.478 0.00 0.00 0.00 2.82
493 526 2.704725 ACATTCGCGCAGAACAAAAT 57.295 40.000 8.75 0.00 42.39 1.82
505 538 0.593773 ACAACACGCCAAACATTCGC 60.594 50.000 0.00 0.00 0.00 4.70
564 600 6.700081 CCATCAACGACCGAATTTCTAAGATA 59.300 38.462 0.00 0.00 0.00 1.98
641 790 5.982890 TCCTTTCTTGCAAGATTAAAGGG 57.017 39.130 36.05 27.73 39.43 3.95
660 809 6.220930 GCATCATCAACATAATTGCATTCCT 58.779 36.000 0.00 0.00 0.00 3.36
661 810 5.407387 GGCATCATCAACATAATTGCATTCC 59.593 40.000 0.00 0.00 0.00 3.01
672 828 3.558931 TCTAACGGGCATCATCAACAT 57.441 42.857 0.00 0.00 0.00 2.71
686 842 4.881850 AGCCATATTTTCCAGGTTCTAACG 59.118 41.667 0.00 0.00 0.00 3.18
745 901 3.244875 TGCACAGGACATACCAGACAATT 60.245 43.478 0.00 0.00 42.04 2.32
746 902 2.305635 TGCACAGGACATACCAGACAAT 59.694 45.455 0.00 0.00 42.04 2.71
747 903 1.696884 TGCACAGGACATACCAGACAA 59.303 47.619 0.00 0.00 42.04 3.18
749 905 1.726853 GTGCACAGGACATACCAGAC 58.273 55.000 13.17 0.00 42.04 3.51
751 907 0.740868 CCGTGCACAGGACATACCAG 60.741 60.000 18.64 0.00 42.04 4.00
752 908 1.295101 CCGTGCACAGGACATACCA 59.705 57.895 18.64 0.00 42.04 3.25
758 915 0.664166 CATTTTGCCGTGCACAGGAC 60.664 55.000 25.37 17.97 38.71 3.85
761 918 0.664166 GTCCATTTTGCCGTGCACAG 60.664 55.000 18.64 6.69 38.71 3.66
788 945 4.339872 TCTTTCTAAGGCACCGTAACAA 57.660 40.909 0.00 0.00 0.00 2.83
797 954 4.261801 GTTGGCACTATCTTTCTAAGGCA 58.738 43.478 0.00 0.00 0.00 4.75
808 965 3.065371 CGGAAATCCTTGTTGGCACTATC 59.935 47.826 0.00 0.00 35.26 2.08
899 1056 2.671963 CAGCAGCAGCAGCAAGGA 60.672 61.111 12.92 0.00 45.49 3.36
914 1071 0.240411 GCAGGTTCAGAAAGCAGCAG 59.760 55.000 0.00 0.00 42.79 4.24
915 1072 2.334307 GCAGGTTCAGAAAGCAGCA 58.666 52.632 0.00 0.00 42.79 4.41
916 1073 0.670162 TTGCAGGTTCAGAAAGCAGC 59.330 50.000 6.36 2.59 43.35 5.25
917 1074 4.978083 ATATTGCAGGTTCAGAAAGCAG 57.022 40.909 6.36 0.00 36.47 4.24
918 1075 5.336690 GGAAATATTGCAGGTTCAGAAAGCA 60.337 40.000 0.00 2.85 35.29 3.91
919 1076 5.105063 GGAAATATTGCAGGTTCAGAAAGC 58.895 41.667 0.00 0.00 0.00 3.51
974 1131 2.525592 CCCCTTTGTGGCCTCCAA 59.474 61.111 3.32 4.06 34.18 3.53
993 1150 4.261489 GCCTCATCATCAATCATGTCCAAC 60.261 45.833 0.00 0.00 33.66 3.77
1025 1182 0.548031 AGGGGCATCAATGATGTCGT 59.452 50.000 22.50 14.21 44.58 4.34
1052 1209 1.067516 GAAACTTTGCAGCAGCTTCCA 59.932 47.619 1.76 0.00 42.74 3.53
1205 1362 6.420903 CGAAGATGCTATTCCTTGATTCGTAA 59.579 38.462 0.00 0.00 34.07 3.18
1217 1374 1.527311 GAACGGCCGAAGATGCTATTC 59.473 52.381 35.90 17.80 0.00 1.75
1404 1561 0.753111 GGGTGGATGATGCTTGGGTC 60.753 60.000 0.00 0.00 0.00 4.46
1655 1812 4.462508 TCTTCATGTCTAGGAGCTTGTG 57.537 45.455 0.00 0.00 0.00 3.33
1678 1835 5.300539 GCTGAGAATCTGAGGTCTGTACATA 59.699 44.000 0.00 0.00 35.94 2.29
1751 1908 1.221840 GGCTCTTCAAGGATGCGGA 59.778 57.895 0.00 0.00 0.00 5.54
2032 2190 3.519510 CACCTGAGGGTTCTCCAAAGATA 59.480 47.826 2.38 0.00 44.73 1.98
2055 2213 6.767524 AGTTCCACAAGTAAATCAAACACA 57.232 33.333 0.00 0.00 0.00 3.72
2121 2279 3.127548 GCCAACAACTCATGACATACTGG 59.872 47.826 0.00 0.00 0.00 4.00
2290 2448 5.490357 CCCCCTCATAATCATCTGGTAGAAT 59.510 44.000 0.00 0.00 0.00 2.40
2623 2781 3.446873 TCTGAATCTCTGTCCTGCTTCTC 59.553 47.826 0.00 0.00 0.00 2.87
3020 3179 7.501559 AGAGCTCATAGCATGTTAAATTGATGT 59.498 33.333 17.77 0.00 45.56 3.06
3353 3526 5.123186 TGCGGAATGGTAGTTAAACAAGATG 59.877 40.000 0.00 0.00 0.00 2.90
3492 3716 1.976045 GCAACGCCAACTTCAAATACG 59.024 47.619 0.00 0.00 0.00 3.06
4249 4747 1.142870 TCCAGTGTTCCCTTCAGTTGG 59.857 52.381 0.00 0.00 0.00 3.77
4450 5044 6.992715 ACCGTGAGATCCTAAATAATTTCTGG 59.007 38.462 0.00 0.00 0.00 3.86
4499 5093 6.452872 GCAACAAATTTCGACATAGAACATGC 60.453 38.462 0.00 0.00 0.00 4.06
4516 5110 2.098117 GCTAATCCTGCGAGCAACAAAT 59.902 45.455 0.00 0.00 36.20 2.32
4517 5113 1.468520 GCTAATCCTGCGAGCAACAAA 59.531 47.619 0.00 0.00 36.20 2.83
4527 5123 3.438297 TCACTAACTCGCTAATCCTGC 57.562 47.619 0.00 0.00 0.00 4.85
4529 5125 3.551046 CGCATCACTAACTCGCTAATCCT 60.551 47.826 0.00 0.00 0.00 3.24
4555 5151 3.570926 ACCGTACTATATGCATCCGTG 57.429 47.619 0.19 0.00 0.00 4.94
4565 5161 6.449635 AATCAACGTACCAACCGTACTATA 57.550 37.500 0.00 0.00 44.52 1.31
4651 5247 9.909644 TGAGAGAGACTACAAAGTTTGTATAAC 57.090 33.333 24.86 18.52 44.46 1.89
4673 5269 3.251729 GCAGACTTCAGCAACATTTGAGA 59.748 43.478 0.00 0.00 0.00 3.27
4677 5273 2.288030 GCAGCAGACTTCAGCAACATTT 60.288 45.455 0.00 0.00 0.00 2.32
4680 5276 0.179037 AGCAGCAGACTTCAGCAACA 60.179 50.000 0.00 0.00 0.00 3.33
4692 5288 2.168106 AGGAGACATCACTAAGCAGCAG 59.832 50.000 0.00 0.00 0.00 4.24
4701 5297 1.474478 CACGTAGCAGGAGACATCACT 59.526 52.381 0.00 0.00 0.00 3.41
4718 5314 3.561213 CGCCATCAGCTCTGCACG 61.561 66.667 0.00 0.00 40.39 5.34
4743 5339 9.097257 CTTTTATTCAGAAAACCAGAAGCAAAA 57.903 29.630 0.00 0.00 0.00 2.44
4753 5349 7.042725 GCCACAACTTCTTTTATTCAGAAAACC 60.043 37.037 0.00 0.00 29.74 3.27
4823 5419 9.438291 CCTGTAAGAAAATGCAATATTACGAAG 57.562 33.333 0.00 0.00 34.07 3.79
4824 5420 8.402472 CCCTGTAAGAAAATGCAATATTACGAA 58.598 33.333 0.00 0.00 34.07 3.85
4825 5421 7.554835 ACCCTGTAAGAAAATGCAATATTACGA 59.445 33.333 0.00 0.00 34.07 3.43
4888 5493 8.995027 TGGCTGTAAAAGTATCCATCAAATAT 57.005 30.769 0.00 0.00 0.00 1.28
4890 5495 6.183360 GCTGGCTGTAAAAGTATCCATCAAAT 60.183 38.462 0.00 0.00 0.00 2.32
4894 5499 4.035675 GTGCTGGCTGTAAAAGTATCCATC 59.964 45.833 0.00 0.00 0.00 3.51
4949 5719 5.296780 TCTGATTGGACACAGTTCAAAAGAC 59.703 40.000 0.00 0.00 34.47 3.01
4951 5721 5.297776 AGTCTGATTGGACACAGTTCAAAAG 59.702 40.000 0.00 0.00 34.47 2.27
4990 5760 6.128035 TGCATCAACATAAAGTAGCAATTCGT 60.128 34.615 0.00 0.00 0.00 3.85
5002 5772 8.789825 AAAATATTGGCTTGCATCAACATAAA 57.210 26.923 0.00 0.00 0.00 1.40
5017 5787 7.614124 ACCAATTGTTCATGAAAATATTGGC 57.386 32.000 32.27 15.15 39.51 4.52
5061 6066 4.159693 ACATACTGGAGCGACTTGATACAA 59.840 41.667 0.00 0.00 0.00 2.41
5062 6067 3.699538 ACATACTGGAGCGACTTGATACA 59.300 43.478 0.00 0.00 0.00 2.29
5063 6068 4.045104 CACATACTGGAGCGACTTGATAC 58.955 47.826 0.00 0.00 0.00 2.24
5064 6069 3.068165 CCACATACTGGAGCGACTTGATA 59.932 47.826 0.00 0.00 43.95 2.15
5065 6070 2.159043 CCACATACTGGAGCGACTTGAT 60.159 50.000 0.00 0.00 43.95 2.57
5070 6075 2.094762 AAACCACATACTGGAGCGAC 57.905 50.000 0.00 0.00 43.95 5.19
5071 6076 2.851263 AAAACCACATACTGGAGCGA 57.149 45.000 0.00 0.00 43.95 4.93
5072 6077 2.161609 GGAAAAACCACATACTGGAGCG 59.838 50.000 0.00 0.00 43.95 5.03
5073 6078 3.191371 CAGGAAAAACCACATACTGGAGC 59.809 47.826 0.00 0.00 43.95 4.70
5074 6079 3.191371 GCAGGAAAAACCACATACTGGAG 59.809 47.826 0.00 0.00 43.95 3.86
5075 6080 3.153919 GCAGGAAAAACCACATACTGGA 58.846 45.455 0.00 0.00 43.95 3.86
5077 6082 5.003804 ACTAGCAGGAAAAACCACATACTG 58.996 41.667 0.00 0.00 42.04 2.74
5079 6084 5.705905 AGAACTAGCAGGAAAAACCACATAC 59.294 40.000 0.00 0.00 42.04 2.39
5080 6085 5.705441 CAGAACTAGCAGGAAAAACCACATA 59.295 40.000 0.00 0.00 42.04 2.29
5081 6086 4.520492 CAGAACTAGCAGGAAAAACCACAT 59.480 41.667 0.00 0.00 42.04 3.21
5082 6087 3.882888 CAGAACTAGCAGGAAAAACCACA 59.117 43.478 0.00 0.00 42.04 4.17
5083 6088 4.023963 GTCAGAACTAGCAGGAAAAACCAC 60.024 45.833 0.00 0.00 42.04 4.16
5084 6089 4.134563 GTCAGAACTAGCAGGAAAAACCA 58.865 43.478 0.00 0.00 42.04 3.67
5086 6091 4.574828 TGTGTCAGAACTAGCAGGAAAAAC 59.425 41.667 0.00 0.00 0.00 2.43
5087 6092 4.776349 TGTGTCAGAACTAGCAGGAAAAA 58.224 39.130 0.00 0.00 0.00 1.94
5088 6093 4.380531 CTGTGTCAGAACTAGCAGGAAAA 58.619 43.478 0.00 0.00 32.44 2.29
5089 6094 3.803715 GCTGTGTCAGAACTAGCAGGAAA 60.804 47.826 0.66 0.00 36.74 3.13
5090 6095 2.289072 GCTGTGTCAGAACTAGCAGGAA 60.289 50.000 0.66 0.00 36.74 3.36
5091 6096 1.273606 GCTGTGTCAGAACTAGCAGGA 59.726 52.381 0.66 0.00 36.74 3.86
5092 6097 1.001293 TGCTGTGTCAGAACTAGCAGG 59.999 52.381 0.66 0.00 39.60 4.85
5093 6098 2.445565 TGCTGTGTCAGAACTAGCAG 57.554 50.000 0.66 0.00 39.60 4.24
5094 6099 3.407424 AATGCTGTGTCAGAACTAGCA 57.593 42.857 0.00 0.00 44.45 3.49
5095 6100 4.756084 AAAATGCTGTGTCAGAACTAGC 57.244 40.909 0.66 0.00 37.05 3.42
5096 6101 5.050091 ACGAAAAATGCTGTGTCAGAACTAG 60.050 40.000 0.66 0.00 32.44 2.57
5097 6102 4.814234 ACGAAAAATGCTGTGTCAGAACTA 59.186 37.500 0.66 0.00 32.44 2.24
5101 6106 2.548057 GGACGAAAAATGCTGTGTCAGA 59.452 45.455 0.66 0.00 32.44 3.27
5103 6108 1.262950 CGGACGAAAAATGCTGTGTCA 59.737 47.619 0.00 0.00 0.00 3.58
5104 6109 1.950472 CGGACGAAAAATGCTGTGTC 58.050 50.000 0.00 0.00 0.00 3.67
5106 6111 0.238289 AGCGGACGAAAAATGCTGTG 59.762 50.000 0.00 0.00 33.99 3.66
5108 6113 0.516877 TGAGCGGACGAAAAATGCTG 59.483 50.000 0.00 0.00 35.73 4.41
5110 6115 0.179189 CCTGAGCGGACGAAAAATGC 60.179 55.000 0.00 0.00 33.16 3.56
5111 6116 0.447801 CCCTGAGCGGACGAAAAATG 59.552 55.000 0.00 0.00 33.16 2.32
5113 6118 1.302192 CCCCTGAGCGGACGAAAAA 60.302 57.895 0.00 0.00 33.16 1.94
5114 6119 2.345991 CCCCTGAGCGGACGAAAA 59.654 61.111 0.00 0.00 33.16 2.29
5115 6120 4.388499 GCCCCTGAGCGGACGAAA 62.388 66.667 0.00 0.00 33.16 3.46
5140 6145 3.993614 TTGCAGGGCCGCCTACATG 62.994 63.158 9.86 4.85 0.00 3.21
5141 6146 3.727258 TTGCAGGGCCGCCTACAT 61.727 61.111 9.86 0.00 0.00 2.29
5142 6147 4.715523 GTTGCAGGGCCGCCTACA 62.716 66.667 9.86 2.32 0.00 2.74
5143 6148 2.530958 TAAGTTGCAGGGCCGCCTAC 62.531 60.000 9.86 13.51 0.00 3.18
5144 6149 1.843462 TTAAGTTGCAGGGCCGCCTA 61.843 55.000 9.86 3.70 0.00 3.93
5145 6150 2.706952 TTTAAGTTGCAGGGCCGCCT 62.707 55.000 9.86 5.80 0.00 5.52
5147 6152 0.246360 ATTTTAAGTTGCAGGGCCGC 59.754 50.000 12.46 12.46 0.00 6.53
5148 6153 2.159296 GGTATTTTAAGTTGCAGGGCCG 60.159 50.000 0.00 0.00 0.00 6.13
5150 6155 2.750712 TCGGTATTTTAAGTTGCAGGGC 59.249 45.455 0.00 0.00 0.00 5.19
5151 6156 5.576447 ATTCGGTATTTTAAGTTGCAGGG 57.424 39.130 0.00 0.00 0.00 4.45
5152 6157 6.317893 ACCTATTCGGTATTTTAAGTTGCAGG 59.682 38.462 0.00 0.00 46.73 4.85
5153 6158 7.065324 TCACCTATTCGGTATTTTAAGTTGCAG 59.935 37.037 0.00 0.00 46.94 4.41
5154 6159 6.879993 TCACCTATTCGGTATTTTAAGTTGCA 59.120 34.615 0.00 0.00 46.94 4.08
5155 6160 7.311364 TCACCTATTCGGTATTTTAAGTTGC 57.689 36.000 0.00 0.00 46.94 4.17
5156 6161 7.551617 ACCTCACCTATTCGGTATTTTAAGTTG 59.448 37.037 0.00 0.00 46.94 3.16
5157 6162 7.627311 ACCTCACCTATTCGGTATTTTAAGTT 58.373 34.615 0.00 0.00 46.94 2.66
5158 6163 7.191593 ACCTCACCTATTCGGTATTTTAAGT 57.808 36.000 0.00 0.00 46.94 2.24
5159 6164 7.551617 ACAACCTCACCTATTCGGTATTTTAAG 59.448 37.037 0.00 0.00 46.94 1.85
5160 6165 7.396418 ACAACCTCACCTATTCGGTATTTTAA 58.604 34.615 0.00 0.00 46.94 1.52
5161 6166 6.949715 ACAACCTCACCTATTCGGTATTTTA 58.050 36.000 0.00 0.00 46.94 1.52
5162 6167 5.812286 ACAACCTCACCTATTCGGTATTTT 58.188 37.500 0.00 0.00 46.94 1.82
5163 6168 5.046159 TGACAACCTCACCTATTCGGTATTT 60.046 40.000 0.00 0.00 46.94 1.40
5164 6169 4.468510 TGACAACCTCACCTATTCGGTATT 59.531 41.667 0.00 0.00 46.94 1.89
5165 6170 4.028131 TGACAACCTCACCTATTCGGTAT 58.972 43.478 0.00 0.00 46.94 2.73
5166 6171 3.433343 TGACAACCTCACCTATTCGGTA 58.567 45.455 0.00 0.00 46.94 4.02
5168 6173 2.233922 ACTGACAACCTCACCTATTCGG 59.766 50.000 0.00 0.00 39.35 4.30
5169 6174 3.594603 ACTGACAACCTCACCTATTCG 57.405 47.619 0.00 0.00 0.00 3.34
5170 6175 5.875359 CCTAAACTGACAACCTCACCTATTC 59.125 44.000 0.00 0.00 0.00 1.75
5171 6176 5.309806 ACCTAAACTGACAACCTCACCTATT 59.690 40.000 0.00 0.00 0.00 1.73
5172 6177 4.844655 ACCTAAACTGACAACCTCACCTAT 59.155 41.667 0.00 0.00 0.00 2.57
5173 6178 4.228824 ACCTAAACTGACAACCTCACCTA 58.771 43.478 0.00 0.00 0.00 3.08
5174 6179 3.046374 ACCTAAACTGACAACCTCACCT 58.954 45.455 0.00 0.00 0.00 4.00
5175 6180 3.487120 ACCTAAACTGACAACCTCACC 57.513 47.619 0.00 0.00 0.00 4.02
5176 6181 5.830000 AAAACCTAAACTGACAACCTCAC 57.170 39.130 0.00 0.00 0.00 3.51
5177 6182 6.488683 CCATAAAACCTAAACTGACAACCTCA 59.511 38.462 0.00 0.00 0.00 3.86
5178 6183 6.072119 CCCATAAAACCTAAACTGACAACCTC 60.072 42.308 0.00 0.00 0.00 3.85
5179 6184 5.773176 CCCATAAAACCTAAACTGACAACCT 59.227 40.000 0.00 0.00 0.00 3.50
5180 6185 5.537295 ACCCATAAAACCTAAACTGACAACC 59.463 40.000 0.00 0.00 0.00 3.77
5181 6186 6.567132 CGACCCATAAAACCTAAACTGACAAC 60.567 42.308 0.00 0.00 0.00 3.32
5182 6187 5.470777 CGACCCATAAAACCTAAACTGACAA 59.529 40.000 0.00 0.00 0.00 3.18
5183 6188 4.998672 CGACCCATAAAACCTAAACTGACA 59.001 41.667 0.00 0.00 0.00 3.58
5184 6189 4.393990 CCGACCCATAAAACCTAAACTGAC 59.606 45.833 0.00 0.00 0.00 3.51
5185 6190 4.286549 TCCGACCCATAAAACCTAAACTGA 59.713 41.667 0.00 0.00 0.00 3.41
5186 6191 4.393990 GTCCGACCCATAAAACCTAAACTG 59.606 45.833 0.00 0.00 0.00 3.16
5187 6192 4.566278 GGTCCGACCCATAAAACCTAAACT 60.566 45.833 6.25 0.00 30.04 2.66
5188 6193 3.691118 GGTCCGACCCATAAAACCTAAAC 59.309 47.826 6.25 0.00 30.04 2.01
5189 6194 3.619487 CGGTCCGACCCATAAAACCTAAA 60.619 47.826 4.91 0.00 33.75 1.85
5190 6195 2.093553 CGGTCCGACCCATAAAACCTAA 60.094 50.000 4.91 0.00 33.75 2.69
5191 6196 1.481772 CGGTCCGACCCATAAAACCTA 59.518 52.381 4.91 0.00 33.75 3.08
5192 6197 0.251073 CGGTCCGACCCATAAAACCT 59.749 55.000 4.91 0.00 33.75 3.50
5193 6198 0.036105 ACGGTCCGACCCATAAAACC 60.036 55.000 20.51 0.00 33.75 3.27
5194 6199 1.362768 GACGGTCCGACCCATAAAAC 58.637 55.000 20.51 0.00 33.75 2.43
5195 6200 0.108709 CGACGGTCCGACCCATAAAA 60.109 55.000 20.51 0.00 33.75 1.52
5196 6201 1.512230 CGACGGTCCGACCCATAAA 59.488 57.895 20.51 0.00 33.75 1.40
5197 6202 2.417257 CCGACGGTCCGACCCATAA 61.417 63.158 20.51 0.00 33.75 1.90
5198 6203 2.829914 CCGACGGTCCGACCCATA 60.830 66.667 20.51 0.00 33.75 2.74
5201 6206 1.948721 ATAAACCGACGGTCCGACCC 61.949 60.000 22.00 5.66 33.12 4.46
5202 6207 0.108662 AATAAACCGACGGTCCGACC 60.109 55.000 22.00 7.59 33.12 4.79
5203 6208 0.994263 CAATAAACCGACGGTCCGAC 59.006 55.000 22.00 11.53 33.12 4.79
5204 6209 0.108709 CCAATAAACCGACGGTCCGA 60.109 55.000 22.00 9.00 33.12 4.55
5205 6210 0.390209 ACCAATAAACCGACGGTCCG 60.390 55.000 22.00 10.48 33.12 4.79
5206 6211 1.733912 GAACCAATAAACCGACGGTCC 59.266 52.381 22.00 0.00 33.12 4.46
5207 6212 2.158254 GTGAACCAATAAACCGACGGTC 59.842 50.000 22.00 4.73 33.12 4.79
5208 6213 2.145536 GTGAACCAATAAACCGACGGT 58.854 47.619 15.37 15.37 37.65 4.83
5209 6214 2.419667 AGTGAACCAATAAACCGACGG 58.580 47.619 13.61 13.61 0.00 4.79
5210 6215 4.215965 CAAAGTGAACCAATAAACCGACG 58.784 43.478 0.00 0.00 0.00 5.12
5211 6216 3.978855 GCAAAGTGAACCAATAAACCGAC 59.021 43.478 0.00 0.00 0.00 4.79
5212 6217 3.304123 CGCAAAGTGAACCAATAAACCGA 60.304 43.478 0.00 0.00 0.00 4.69
5213 6218 2.977169 CGCAAAGTGAACCAATAAACCG 59.023 45.455 0.00 0.00 0.00 4.44
5214 6219 4.231718 TCGCAAAGTGAACCAATAAACC 57.768 40.909 0.00 0.00 0.00 3.27
5215 6220 7.861176 TTTATCGCAAAGTGAACCAATAAAC 57.139 32.000 0.00 0.00 0.00 2.01
5216 6221 8.873215 TTTTTATCGCAAAGTGAACCAATAAA 57.127 26.923 0.00 0.00 0.00 1.40
5252 6257 9.589111 GGTCAAATTTGTGAAAAACTACCTTAA 57.411 29.630 17.47 0.00 0.00 1.85
5253 6258 8.973182 AGGTCAAATTTGTGAAAAACTACCTTA 58.027 29.630 17.47 0.00 0.00 2.69
5254 6259 7.847096 AGGTCAAATTTGTGAAAAACTACCTT 58.153 30.769 17.47 3.07 0.00 3.50
5255 6260 7.123547 TGAGGTCAAATTTGTGAAAAACTACCT 59.876 33.333 17.47 17.51 0.00 3.08
5256 6261 7.222031 GTGAGGTCAAATTTGTGAAAAACTACC 59.778 37.037 17.47 13.49 0.00 3.18
5257 6262 7.757624 TGTGAGGTCAAATTTGTGAAAAACTAC 59.242 33.333 17.47 5.36 0.00 2.73
5258 6263 7.831753 TGTGAGGTCAAATTTGTGAAAAACTA 58.168 30.769 17.47 0.00 0.00 2.24
5259 6264 6.696411 TGTGAGGTCAAATTTGTGAAAAACT 58.304 32.000 17.47 6.10 0.00 2.66
5260 6265 6.959671 TGTGAGGTCAAATTTGTGAAAAAC 57.040 33.333 17.47 7.39 0.00 2.43
5261 6266 7.326454 TGATGTGAGGTCAAATTTGTGAAAAA 58.674 30.769 17.47 0.00 0.00 1.94
5262 6267 6.871844 TGATGTGAGGTCAAATTTGTGAAAA 58.128 32.000 17.47 0.00 0.00 2.29
5263 6268 6.462552 TGATGTGAGGTCAAATTTGTGAAA 57.537 33.333 17.47 0.00 0.00 2.69
5264 6269 6.462552 TTGATGTGAGGTCAAATTTGTGAA 57.537 33.333 17.47 0.00 32.98 3.18
5265 6270 6.653526 ATTGATGTGAGGTCAAATTTGTGA 57.346 33.333 17.47 0.00 38.89 3.58
5266 6271 7.326789 GTGTATTGATGTGAGGTCAAATTTGTG 59.673 37.037 17.47 0.00 38.89 3.33
5267 6272 7.014134 TGTGTATTGATGTGAGGTCAAATTTGT 59.986 33.333 17.47 0.00 38.89 2.83
5268 6273 7.369607 TGTGTATTGATGTGAGGTCAAATTTG 58.630 34.615 12.15 12.15 38.89 2.32
5269 6274 7.523293 TGTGTATTGATGTGAGGTCAAATTT 57.477 32.000 0.00 0.00 38.89 1.82
5270 6275 7.707624 ATGTGTATTGATGTGAGGTCAAATT 57.292 32.000 0.00 0.00 38.89 1.82
5271 6276 8.677300 GTTATGTGTATTGATGTGAGGTCAAAT 58.323 33.333 0.00 0.00 38.89 2.32
5272 6277 7.663493 TGTTATGTGTATTGATGTGAGGTCAAA 59.337 33.333 0.00 0.00 38.89 2.69
5273 6278 7.164803 TGTTATGTGTATTGATGTGAGGTCAA 58.835 34.615 0.00 0.00 39.65 3.18
5274 6279 6.706295 TGTTATGTGTATTGATGTGAGGTCA 58.294 36.000 0.00 0.00 0.00 4.02
5275 6280 7.792374 ATGTTATGTGTATTGATGTGAGGTC 57.208 36.000 0.00 0.00 0.00 3.85
5276 6281 8.579850 AAATGTTATGTGTATTGATGTGAGGT 57.420 30.769 0.00 0.00 0.00 3.85
5318 6323 9.694137 GAGTAGACTAGTAACACTTTGTCATTT 57.306 33.333 0.00 1.56 34.89 2.32
5319 6324 8.305317 GGAGTAGACTAGTAACACTTTGTCATT 58.695 37.037 0.00 1.79 34.89 2.57
5320 6325 7.093858 GGGAGTAGACTAGTAACACTTTGTCAT 60.094 40.741 0.00 2.21 34.89 3.06
5321 6326 6.208204 GGGAGTAGACTAGTAACACTTTGTCA 59.792 42.308 0.00 0.00 34.89 3.58
5322 6327 6.433716 AGGGAGTAGACTAGTAACACTTTGTC 59.566 42.308 0.00 0.00 33.63 3.18
5323 6328 6.313324 AGGGAGTAGACTAGTAACACTTTGT 58.687 40.000 0.00 0.00 0.00 2.83
5324 6329 6.127675 GGAGGGAGTAGACTAGTAACACTTTG 60.128 46.154 0.00 0.00 0.00 2.77
5325 6330 5.951148 GGAGGGAGTAGACTAGTAACACTTT 59.049 44.000 0.00 0.00 0.00 2.66
5326 6331 5.253564 AGGAGGGAGTAGACTAGTAACACTT 59.746 44.000 0.00 0.00 0.00 3.16
5327 6332 4.789702 AGGAGGGAGTAGACTAGTAACACT 59.210 45.833 0.00 0.00 0.00 3.55
5328 6333 5.114764 AGGAGGGAGTAGACTAGTAACAC 57.885 47.826 0.00 0.00 0.00 3.32
5329 6334 5.793034 AAGGAGGGAGTAGACTAGTAACA 57.207 43.478 0.00 0.00 0.00 2.41
5330 6335 5.593909 GGAAAGGAGGGAGTAGACTAGTAAC 59.406 48.000 0.00 0.00 0.00 2.50
5331 6336 5.631009 CGGAAAGGAGGGAGTAGACTAGTAA 60.631 48.000 0.00 0.00 0.00 2.24
5332 6337 4.141528 CGGAAAGGAGGGAGTAGACTAGTA 60.142 50.000 0.00 0.00 0.00 1.82
5333 6338 3.371810 CGGAAAGGAGGGAGTAGACTAGT 60.372 52.174 0.00 0.00 0.00 2.57
5334 6339 3.215975 CGGAAAGGAGGGAGTAGACTAG 58.784 54.545 0.00 0.00 0.00 2.57
5335 6340 2.091994 CCGGAAAGGAGGGAGTAGACTA 60.092 54.545 0.00 0.00 45.00 2.59
5336 6341 1.342175 CCGGAAAGGAGGGAGTAGACT 60.342 57.143 0.00 0.00 45.00 3.24
5337 6342 1.112950 CCGGAAAGGAGGGAGTAGAC 58.887 60.000 0.00 0.00 45.00 2.59
5338 6343 0.708802 ACCGGAAAGGAGGGAGTAGA 59.291 55.000 9.46 0.00 45.00 2.59
5339 6344 1.569653 AACCGGAAAGGAGGGAGTAG 58.430 55.000 9.46 0.00 45.00 2.57
5340 6345 2.034436 AAACCGGAAAGGAGGGAGTA 57.966 50.000 9.46 0.00 45.00 2.59
5341 6346 2.034436 TAAACCGGAAAGGAGGGAGT 57.966 50.000 9.46 0.00 45.00 3.85
5342 6347 4.765813 TTATAAACCGGAAAGGAGGGAG 57.234 45.455 9.46 0.00 45.00 4.30
5343 6348 4.627013 GCTTTATAAACCGGAAAGGAGGGA 60.627 45.833 9.46 0.00 45.00 4.20
5344 6349 3.630769 GCTTTATAAACCGGAAAGGAGGG 59.369 47.826 9.46 0.00 45.00 4.30
5345 6350 4.524053 AGCTTTATAAACCGGAAAGGAGG 58.476 43.478 9.46 0.00 45.00 4.30
5346 6351 5.183228 TGAGCTTTATAAACCGGAAAGGAG 58.817 41.667 9.46 0.00 45.00 3.69
5347 6352 5.168647 TGAGCTTTATAAACCGGAAAGGA 57.831 39.130 9.46 0.00 45.00 3.36
5349 6354 9.849166 TTAAATTGAGCTTTATAAACCGGAAAG 57.151 29.630 9.46 8.48 34.06 2.62
5362 6367 9.045223 GTTGGTGAGATTTTTAAATTGAGCTTT 57.955 29.630 0.00 0.00 0.00 3.51
5363 6368 7.657354 GGTTGGTGAGATTTTTAAATTGAGCTT 59.343 33.333 0.00 0.00 0.00 3.74
5364 6369 7.154656 GGTTGGTGAGATTTTTAAATTGAGCT 58.845 34.615 0.00 0.00 0.00 4.09
5365 6370 6.928492 TGGTTGGTGAGATTTTTAAATTGAGC 59.072 34.615 0.00 0.00 0.00 4.26
5366 6371 8.885494 TTGGTTGGTGAGATTTTTAAATTGAG 57.115 30.769 0.00 0.00 0.00 3.02
5367 6372 7.930865 CCTTGGTTGGTGAGATTTTTAAATTGA 59.069 33.333 0.00 0.00 0.00 2.57
5368 6373 7.714813 ACCTTGGTTGGTGAGATTTTTAAATTG 59.285 33.333 0.00 0.00 39.17 2.32
5369 6374 7.801104 ACCTTGGTTGGTGAGATTTTTAAATT 58.199 30.769 0.00 0.00 39.17 1.82
5370 6375 7.373617 ACCTTGGTTGGTGAGATTTTTAAAT 57.626 32.000 0.00 0.00 39.17 1.40
5371 6376 6.800072 ACCTTGGTTGGTGAGATTTTTAAA 57.200 33.333 0.00 0.00 39.17 1.52
5372 6377 7.291566 TCTACCTTGGTTGGTGAGATTTTTAA 58.708 34.615 0.00 0.00 41.05 1.52
5373 6378 6.843752 TCTACCTTGGTTGGTGAGATTTTTA 58.156 36.000 0.00 0.00 41.05 1.52
5374 6379 5.701224 TCTACCTTGGTTGGTGAGATTTTT 58.299 37.500 0.00 0.00 41.05 1.94
5375 6380 5.319043 TCTACCTTGGTTGGTGAGATTTT 57.681 39.130 0.00 0.00 41.05 1.82
5376 6381 4.993705 TCTACCTTGGTTGGTGAGATTT 57.006 40.909 0.00 0.00 41.05 2.17
5377 6382 4.324563 CCATCTACCTTGGTTGGTGAGATT 60.325 45.833 14.37 0.00 41.05 2.40
5378 6383 3.200825 CCATCTACCTTGGTTGGTGAGAT 59.799 47.826 14.37 6.22 41.05 2.75
5379 6384 2.571653 CCATCTACCTTGGTTGGTGAGA 59.428 50.000 14.37 4.26 41.05 3.27
5380 6385 2.305927 ACCATCTACCTTGGTTGGTGAG 59.694 50.000 14.37 8.18 45.19 3.51
5381 6386 2.344592 ACCATCTACCTTGGTTGGTGA 58.655 47.619 14.37 2.56 45.19 4.02
5382 6387 2.436417 CACCATCTACCTTGGTTGGTG 58.564 52.381 20.88 20.88 45.19 4.17
5383 6388 2.305927 CTCACCATCTACCTTGGTTGGT 59.694 50.000 8.42 8.42 45.19 3.67
5384 6389 2.305927 ACTCACCATCTACCTTGGTTGG 59.694 50.000 7.30 7.30 45.19 3.77
5385 6390 3.338249 CACTCACCATCTACCTTGGTTG 58.662 50.000 0.00 0.00 45.19 3.77
5386 6391 2.305927 CCACTCACCATCTACCTTGGTT 59.694 50.000 0.00 0.00 45.19 3.67
5388 6393 1.909302 ACCACTCACCATCTACCTTGG 59.091 52.381 0.00 0.00 40.26 3.61
5389 6394 2.355108 CCACCACTCACCATCTACCTTG 60.355 54.545 0.00 0.00 0.00 3.61
5390 6395 1.909302 CCACCACTCACCATCTACCTT 59.091 52.381 0.00 0.00 0.00 3.50
5391 6396 1.078823 TCCACCACTCACCATCTACCT 59.921 52.381 0.00 0.00 0.00 3.08
5392 6397 1.568504 TCCACCACTCACCATCTACC 58.431 55.000 0.00 0.00 0.00 3.18
5393 6398 3.914426 ATTCCACCACTCACCATCTAC 57.086 47.619 0.00 0.00 0.00 2.59
5394 6399 4.620723 AGTATTCCACCACTCACCATCTA 58.379 43.478 0.00 0.00 0.00 1.98
5395 6400 3.454858 AGTATTCCACCACTCACCATCT 58.545 45.455 0.00 0.00 0.00 2.90
5396 6401 3.914426 AGTATTCCACCACTCACCATC 57.086 47.619 0.00 0.00 0.00 3.51
5397 6402 4.657814 AAAGTATTCCACCACTCACCAT 57.342 40.909 0.00 0.00 0.00 3.55
5398 6403 4.447138 AAAAGTATTCCACCACTCACCA 57.553 40.909 0.00 0.00 0.00 4.17
5399 6404 4.583073 ACAAAAAGTATTCCACCACTCACC 59.417 41.667 0.00 0.00 0.00 4.02
5400 6405 5.767816 ACAAAAAGTATTCCACCACTCAC 57.232 39.130 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.