Multiple sequence alignment - TraesCS1D01G314700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G314700 | chr1D | 100.000 | 2555 | 0 | 0 | 1 | 2555 | 409800300 | 409797746 | 0.000000e+00 | 4719.0 |
1 | TraesCS1D01G314700 | chr1D | 82.796 | 186 | 29 | 3 | 1096 | 1280 | 410072051 | 410071868 | 2.030000e-36 | 163.0 |
2 | TraesCS1D01G314700 | chr1D | 95.960 | 99 | 2 | 1 | 2457 | 2555 | 414486373 | 414486277 | 2.630000e-35 | 159.0 |
3 | TraesCS1D01G314700 | chr1D | 95.050 | 101 | 3 | 1 | 2455 | 2555 | 63025222 | 63025320 | 9.460000e-35 | 158.0 |
4 | TraesCS1D01G314700 | chr1D | 95.050 | 101 | 3 | 1 | 2455 | 2555 | 299268417 | 299268515 | 9.460000e-35 | 158.0 |
5 | TraesCS1D01G314700 | chr1D | 88.660 | 97 | 6 | 5 | 83 | 178 | 409986890 | 409986798 | 2.080000e-21 | 113.0 |
6 | TraesCS1D01G314700 | chr1B | 92.331 | 1682 | 59 | 28 | 145 | 1806 | 551871104 | 551869473 | 0.000000e+00 | 2327.0 |
7 | TraesCS1D01G314700 | chr1B | 93.204 | 412 | 17 | 3 | 1806 | 2217 | 551869251 | 551868851 | 1.690000e-166 | 595.0 |
8 | TraesCS1D01G314700 | chr1B | 82.581 | 310 | 28 | 21 | 345 | 638 | 552277660 | 552277361 | 1.520000e-62 | 250.0 |
9 | TraesCS1D01G314700 | chr1B | 99.115 | 113 | 1 | 0 | 1 | 113 | 551871213 | 551871101 | 1.200000e-48 | 204.0 |
10 | TraesCS1D01G314700 | chr1B | 87.283 | 173 | 13 | 7 | 2210 | 2375 | 566027730 | 566027900 | 3.360000e-44 | 189.0 |
11 | TraesCS1D01G314700 | chr1B | 84.091 | 176 | 26 | 2 | 1096 | 1270 | 552474263 | 552474089 | 4.370000e-38 | 169.0 |
12 | TraesCS1D01G314700 | chr1B | 93.519 | 108 | 3 | 3 | 2448 | 2555 | 446440502 | 446440605 | 9.460000e-35 | 158.0 |
13 | TraesCS1D01G314700 | chr1B | 88.372 | 129 | 9 | 1 | 1345 | 1473 | 552277090 | 552276968 | 1.580000e-32 | 150.0 |
14 | TraesCS1D01G314700 | chr1B | 90.000 | 100 | 6 | 2 | 117 | 212 | 552277847 | 552277748 | 2.670000e-25 | 126.0 |
15 | TraesCS1D01G314700 | chr1B | 95.000 | 80 | 2 | 1 | 2372 | 2449 | 551868859 | 551868780 | 9.600000e-25 | 124.0 |
16 | TraesCS1D01G314700 | chr1A | 89.832 | 1426 | 80 | 29 | 849 | 2217 | 505681518 | 505680101 | 0.000000e+00 | 1770.0 |
17 | TraesCS1D01G314700 | chr1A | 84.091 | 704 | 28 | 24 | 138 | 803 | 505682182 | 505681525 | 1.010000e-168 | 603.0 |
18 | TraesCS1D01G314700 | chr1A | 79.070 | 344 | 36 | 23 | 457 | 778 | 505733344 | 505733015 | 1.200000e-48 | 204.0 |
19 | TraesCS1D01G314700 | chr1A | 83.523 | 176 | 27 | 2 | 1096 | 1270 | 505925847 | 505925673 | 2.030000e-36 | 163.0 |
20 | TraesCS1D01G314700 | chr1A | 87.597 | 129 | 10 | 1 | 1345 | 1473 | 505732782 | 505732660 | 7.370000e-31 | 145.0 |
21 | TraesCS1D01G314700 | chr1A | 98.718 | 78 | 1 | 0 | 2372 | 2449 | 505680109 | 505680032 | 3.430000e-29 | 139.0 |
22 | TraesCS1D01G314700 | chr1A | 95.745 | 47 | 2 | 0 | 912 | 958 | 505732926 | 505732880 | 2.730000e-10 | 76.8 |
23 | TraesCS1D01G314700 | chr1A | 95.122 | 41 | 2 | 0 | 172 | 212 | 505738841 | 505738801 | 5.900000e-07 | 65.8 |
24 | TraesCS1D01G314700 | chr3B | 85.238 | 210 | 25 | 6 | 1065 | 1271 | 568282986 | 568283192 | 7.160000e-51 | 211.0 |
25 | TraesCS1D01G314700 | chr6D | 93.525 | 139 | 7 | 2 | 2216 | 2353 | 446946707 | 446946844 | 3.330000e-49 | 206.0 |
26 | TraesCS1D01G314700 | chr6D | 85.075 | 201 | 21 | 7 | 1071 | 1267 | 139916297 | 139916492 | 2.010000e-46 | 196.0 |
27 | TraesCS1D01G314700 | chrUn | 92.414 | 145 | 7 | 4 | 2216 | 2357 | 87864632 | 87864775 | 1.200000e-48 | 204.0 |
28 | TraesCS1D01G314700 | chr4D | 92.414 | 145 | 6 | 4 | 2216 | 2357 | 35722485 | 35722343 | 4.310000e-48 | 202.0 |
29 | TraesCS1D01G314700 | chr3D | 92.414 | 145 | 5 | 4 | 2217 | 2357 | 506177313 | 506177171 | 4.310000e-48 | 202.0 |
30 | TraesCS1D01G314700 | chr2A | 89.506 | 162 | 10 | 7 | 2216 | 2373 | 59640680 | 59640838 | 5.580000e-47 | 198.0 |
31 | TraesCS1D01G314700 | chr5B | 91.667 | 144 | 9 | 2 | 2214 | 2357 | 8159951 | 8160091 | 2.010000e-46 | 196.0 |
32 | TraesCS1D01G314700 | chr4A | 91.156 | 147 | 7 | 5 | 2215 | 2357 | 678341438 | 678341582 | 7.210000e-46 | 195.0 |
33 | TraesCS1D01G314700 | chr4A | 94.231 | 104 | 4 | 1 | 2452 | 2555 | 547789894 | 547789995 | 9.460000e-35 | 158.0 |
34 | TraesCS1D01G314700 | chr6B | 84.577 | 201 | 22 | 7 | 1071 | 1267 | 239729234 | 239729429 | 9.330000e-45 | 191.0 |
35 | TraesCS1D01G314700 | chr6B | 95.960 | 99 | 2 | 1 | 2457 | 2555 | 211702840 | 211702936 | 2.630000e-35 | 159.0 |
36 | TraesCS1D01G314700 | chr6B | 93.519 | 108 | 3 | 3 | 2448 | 2555 | 177068663 | 177068766 | 9.460000e-35 | 158.0 |
37 | TraesCS1D01G314700 | chr6A | 84.577 | 201 | 22 | 7 | 1071 | 1267 | 183188160 | 183188355 | 9.330000e-45 | 191.0 |
38 | TraesCS1D01G314700 | chr5D | 88.608 | 158 | 14 | 4 | 2216 | 2372 | 435477413 | 435477259 | 3.360000e-44 | 189.0 |
39 | TraesCS1D01G314700 | chr5D | 95.960 | 99 | 2 | 1 | 2457 | 2555 | 123580624 | 123580528 | 2.630000e-35 | 159.0 |
40 | TraesCS1D01G314700 | chr2D | 95.146 | 103 | 2 | 2 | 2453 | 2555 | 136461861 | 136461762 | 2.630000e-35 | 159.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G314700 | chr1D | 409797746 | 409800300 | 2554 | True | 4719.000000 | 4719 | 100.000000 | 1 | 2555 | 1 | chr1D.!!$R1 | 2554 |
1 | TraesCS1D01G314700 | chr1B | 551868780 | 551871213 | 2433 | True | 812.500000 | 2327 | 94.912500 | 1 | 2449 | 4 | chr1B.!!$R2 | 2448 |
2 | TraesCS1D01G314700 | chr1A | 505680032 | 505682182 | 2150 | True | 837.333333 | 1770 | 90.880333 | 138 | 2449 | 3 | chr1A.!!$R3 | 2311 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
951 | 999 | 0.600255 | AAGAAACTCCACCGCACTCG | 60.6 | 55.0 | 0.0 | 0.0 | 0.0 | 4.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2455 | 2787 | 2.019807 | TTTGGAACGGAGGGAGTACT | 57.98 | 50.0 | 0.0 | 0.0 | 0.0 | 2.73 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
74 | 75 | 1.808531 | AAAACCTTTTACGGCCCGGC | 61.809 | 55.000 | 8.57 | 0.00 | 0.00 | 6.13 |
266 | 268 | 2.608988 | CTGGTCTGGGTCTGGCCT | 60.609 | 66.667 | 3.32 | 0.00 | 37.43 | 5.19 |
274 | 276 | 4.269523 | GGTCTGGCCTGCCACACA | 62.270 | 66.667 | 16.74 | 0.00 | 41.89 | 3.72 |
306 | 309 | 2.203437 | ACACGGGTCAAAAGGCCC | 60.203 | 61.111 | 0.00 | 0.00 | 41.45 | 5.80 |
364 | 369 | 2.435938 | CTGCACCGGCCGTACAAT | 60.436 | 61.111 | 26.12 | 0.21 | 40.13 | 2.71 |
401 | 406 | 2.109387 | AACGTAACGTGCAGGCCA | 59.891 | 55.556 | 5.01 | 0.00 | 39.99 | 5.36 |
402 | 407 | 1.959226 | AACGTAACGTGCAGGCCAG | 60.959 | 57.895 | 5.01 | 0.00 | 39.99 | 4.85 |
403 | 408 | 3.118454 | CGTAACGTGCAGGCCAGG | 61.118 | 66.667 | 5.01 | 0.00 | 35.50 | 4.45 |
404 | 409 | 3.431725 | GTAACGTGCAGGCCAGGC | 61.432 | 66.667 | 5.01 | 9.34 | 32.66 | 4.85 |
405 | 410 | 3.636231 | TAACGTGCAGGCCAGGCT | 61.636 | 61.111 | 18.70 | 0.00 | 32.66 | 4.58 |
406 | 411 | 3.605749 | TAACGTGCAGGCCAGGCTC | 62.606 | 63.158 | 18.70 | 14.46 | 32.66 | 4.70 |
574 | 599 | 4.340246 | CAGGAGGCTGGCAGTGCA | 62.340 | 66.667 | 18.61 | 2.11 | 0.00 | 4.57 |
575 | 600 | 4.031129 | AGGAGGCTGGCAGTGCAG | 62.031 | 66.667 | 18.61 | 13.22 | 0.00 | 4.41 |
581 | 606 | 3.362797 | CTGGCAGTGCAGTGCAGG | 61.363 | 66.667 | 39.34 | 28.59 | 45.93 | 4.85 |
683 | 716 | 3.728373 | CCCTCCCTCAAACCCCCG | 61.728 | 72.222 | 0.00 | 0.00 | 0.00 | 5.73 |
684 | 717 | 2.609610 | CCTCCCTCAAACCCCCGA | 60.610 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
685 | 718 | 2.669240 | CTCCCTCAAACCCCCGAC | 59.331 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
686 | 719 | 3.310860 | CTCCCTCAAACCCCCGACG | 62.311 | 68.421 | 0.00 | 0.00 | 0.00 | 5.12 |
689 | 722 | 4.016706 | CTCAAACCCCCGACGCCT | 62.017 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
692 | 725 | 3.709633 | AAACCCCCGACGCCTACC | 61.710 | 66.667 | 0.00 | 0.00 | 0.00 | 3.18 |
698 | 731 | 2.123982 | CCGACGCCTACCCCTACT | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 2.57 |
817 | 860 | 4.065281 | GGTCCGTCCGTCCCTGTG | 62.065 | 72.222 | 0.00 | 0.00 | 0.00 | 3.66 |
818 | 861 | 4.065281 | GTCCGTCCGTCCCTGTGG | 62.065 | 72.222 | 0.00 | 0.00 | 0.00 | 4.17 |
840 | 883 | 2.564947 | GAGAAAGGAGAGCCAGTGAGAA | 59.435 | 50.000 | 0.00 | 0.00 | 36.29 | 2.87 |
841 | 884 | 2.566724 | AGAAAGGAGAGCCAGTGAGAAG | 59.433 | 50.000 | 0.00 | 0.00 | 36.29 | 2.85 |
859 | 902 | 1.301716 | GGACCACGCTCAAGCTCAA | 60.302 | 57.895 | 0.00 | 0.00 | 39.32 | 3.02 |
900 | 948 | 1.006102 | CCCTGCCGCTCCGTATAAG | 60.006 | 63.158 | 0.00 | 0.00 | 0.00 | 1.73 |
901 | 949 | 1.461091 | CCCTGCCGCTCCGTATAAGA | 61.461 | 60.000 | 0.00 | 0.00 | 0.00 | 2.10 |
932 | 980 | 1.228552 | GCCAGCCAGGGTTCTTCAA | 60.229 | 57.895 | 0.00 | 0.00 | 38.09 | 2.69 |
950 | 998 | 1.264288 | CAAAGAAACTCCACCGCACTC | 59.736 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
951 | 999 | 0.600255 | AAGAAACTCCACCGCACTCG | 60.600 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
952 | 1000 | 2.665185 | AAACTCCACCGCACTCGC | 60.665 | 61.111 | 0.00 | 0.00 | 0.00 | 5.03 |
953 | 1001 | 4.681978 | AACTCCACCGCACTCGCC | 62.682 | 66.667 | 0.00 | 0.00 | 33.11 | 5.54 |
955 | 1003 | 4.680237 | CTCCACCGCACTCGCCAA | 62.680 | 66.667 | 0.00 | 0.00 | 33.11 | 4.52 |
956 | 1004 | 4.680237 | TCCACCGCACTCGCCAAG | 62.680 | 66.667 | 0.00 | 0.00 | 33.11 | 3.61 |
957 | 1005 | 4.680237 | CCACCGCACTCGCCAAGA | 62.680 | 66.667 | 0.00 | 0.00 | 33.11 | 3.02 |
983 | 1031 | 1.618837 | ACCATACTGTGAAGTGAGCGT | 59.381 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
984 | 1032 | 2.823747 | ACCATACTGTGAAGTGAGCGTA | 59.176 | 45.455 | 0.00 | 0.00 | 0.00 | 4.42 |
985 | 1033 | 3.119459 | ACCATACTGTGAAGTGAGCGTAG | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
1571 | 1644 | 4.880537 | ATCTCTTCCGCCGCGCAG | 62.881 | 66.667 | 8.75 | 5.54 | 0.00 | 5.18 |
1587 | 1660 | 1.553690 | GCAGGGGTGTAGAGCTCCAA | 61.554 | 60.000 | 10.93 | 0.00 | 32.58 | 3.53 |
1685 | 1762 | 2.679450 | GTCCGTGTGCTGTGTACATAA | 58.321 | 47.619 | 0.00 | 0.00 | 30.01 | 1.90 |
1728 | 1807 | 0.817634 | TTCACCTTGTGTCGCCTTGG | 60.818 | 55.000 | 0.00 | 0.00 | 34.79 | 3.61 |
1815 | 2117 | 4.024302 | CACTTTAACCCGAGACTGGTTTTC | 60.024 | 45.833 | 2.76 | 0.00 | 43.52 | 2.29 |
1850 | 2160 | 1.929038 | GCTGAGTTAGTGTTCGTGCGA | 60.929 | 52.381 | 0.00 | 0.00 | 0.00 | 5.10 |
1890 | 2200 | 1.021390 | GTTCCCTGAGTCGCATGTGG | 61.021 | 60.000 | 6.39 | 0.00 | 0.00 | 4.17 |
1930 | 2240 | 3.033764 | CAAGCGTACGTGCGGTGT | 61.034 | 61.111 | 30.06 | 17.29 | 42.56 | 4.16 |
1957 | 2287 | 1.725931 | CGAATGCGTCAGTTTTGGCTC | 60.726 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
1958 | 2288 | 0.598065 | AATGCGTCAGTTTTGGCTCC | 59.402 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2034 | 2364 | 2.745884 | CCCAATGGAGCACGCGAA | 60.746 | 61.111 | 15.93 | 0.00 | 0.00 | 4.70 |
2094 | 2424 | 6.860080 | AGTTAATGATCCTTGTGCTGAATTG | 58.140 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2124 | 2454 | 9.102757 | GTAATGATATGTGAGAAGTGATGTTGT | 57.897 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
2202 | 2532 | 5.483685 | AGCAGTTGTAGAAACTATGACCA | 57.516 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
2208 | 2538 | 7.870954 | CAGTTGTAGAAACTATGACCAGTACAA | 59.129 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
2209 | 2539 | 8.594550 | AGTTGTAGAAACTATGACCAGTACAAT | 58.405 | 33.333 | 0.00 | 0.00 | 30.26 | 2.71 |
2210 | 2540 | 9.216117 | GTTGTAGAAACTATGACCAGTACAATT | 57.784 | 33.333 | 0.00 | 0.00 | 30.26 | 2.32 |
2211 | 2541 | 8.997621 | TGTAGAAACTATGACCAGTACAATTC | 57.002 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
2212 | 2542 | 8.038944 | TGTAGAAACTATGACCAGTACAATTCC | 58.961 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2213 | 2543 | 7.016153 | AGAAACTATGACCAGTACAATTCCA | 57.984 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2214 | 2544 | 7.458397 | AGAAACTATGACCAGTACAATTCCAA | 58.542 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
2215 | 2545 | 8.109634 | AGAAACTATGACCAGTACAATTCCAAT | 58.890 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2216 | 2546 | 8.650143 | AAACTATGACCAGTACAATTCCAATT | 57.350 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
2217 | 2547 | 7.865706 | ACTATGACCAGTACAATTCCAATTC | 57.134 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2218 | 2548 | 7.402054 | ACTATGACCAGTACAATTCCAATTCA | 58.598 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2219 | 2549 | 6.764308 | ATGACCAGTACAATTCCAATTCAG | 57.236 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
2220 | 2550 | 5.630121 | TGACCAGTACAATTCCAATTCAGT | 58.370 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
2221 | 2551 | 6.068010 | TGACCAGTACAATTCCAATTCAGTT | 58.932 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2222 | 2552 | 6.549364 | TGACCAGTACAATTCCAATTCAGTTT | 59.451 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
2223 | 2553 | 6.748132 | ACCAGTACAATTCCAATTCAGTTTG | 58.252 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2224 | 2554 | 6.323739 | ACCAGTACAATTCCAATTCAGTTTGT | 59.676 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
2225 | 2555 | 6.863126 | CCAGTACAATTCCAATTCAGTTTGTC | 59.137 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2226 | 2556 | 7.255590 | CCAGTACAATTCCAATTCAGTTTGTCT | 60.256 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
2227 | 2557 | 8.783093 | CAGTACAATTCCAATTCAGTTTGTCTA | 58.217 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2228 | 2558 | 9.349713 | AGTACAATTCCAATTCAGTTTGTCTAA | 57.650 | 29.630 | 0.00 | 0.00 | 0.00 | 2.10 |
2231 | 2561 | 9.696917 | ACAATTCCAATTCAGTTTGTCTAATTC | 57.303 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
2232 | 2562 | 9.695526 | CAATTCCAATTCAGTTTGTCTAATTCA | 57.304 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2233 | 2563 | 9.696917 | AATTCCAATTCAGTTTGTCTAATTCAC | 57.303 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
2234 | 2564 | 7.815840 | TCCAATTCAGTTTGTCTAATTCACA | 57.184 | 32.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2235 | 2565 | 8.408043 | TCCAATTCAGTTTGTCTAATTCACAT | 57.592 | 30.769 | 0.00 | 0.00 | 0.00 | 3.21 |
2236 | 2566 | 8.514594 | TCCAATTCAGTTTGTCTAATTCACATC | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2237 | 2567 | 8.517878 | CCAATTCAGTTTGTCTAATTCACATCT | 58.482 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2242 | 2572 | 9.591792 | TCAGTTTGTCTAATTCACATCTAGATG | 57.408 | 33.333 | 27.63 | 27.63 | 44.15 | 2.90 |
2271 | 2601 | 8.964476 | TTTTAAGGATGTCACATCTAAGATCC | 57.036 | 34.615 | 17.46 | 0.18 | 35.96 | 3.36 |
2272 | 2602 | 5.559148 | AAGGATGTCACATCTAAGATCCC | 57.441 | 43.478 | 17.46 | 0.00 | 36.28 | 3.85 |
2273 | 2603 | 4.560739 | AGGATGTCACATCTAAGATCCCA | 58.439 | 43.478 | 17.46 | 0.00 | 36.28 | 4.37 |
2274 | 2604 | 4.346418 | AGGATGTCACATCTAAGATCCCAC | 59.654 | 45.833 | 17.46 | 0.00 | 36.28 | 4.61 |
2275 | 2605 | 4.101585 | GGATGTCACATCTAAGATCCCACA | 59.898 | 45.833 | 17.46 | 0.00 | 30.91 | 4.17 |
2276 | 2606 | 5.396772 | GGATGTCACATCTAAGATCCCACAA | 60.397 | 44.000 | 17.46 | 0.00 | 30.91 | 3.33 |
2277 | 2607 | 5.497464 | TGTCACATCTAAGATCCCACAAA | 57.503 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
2278 | 2608 | 6.065976 | TGTCACATCTAAGATCCCACAAAT | 57.934 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2279 | 2609 | 7.194112 | TGTCACATCTAAGATCCCACAAATA | 57.806 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2280 | 2610 | 7.805163 | TGTCACATCTAAGATCCCACAAATAT | 58.195 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
2281 | 2611 | 8.933653 | TGTCACATCTAAGATCCCACAAATATA | 58.066 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2282 | 2612 | 9.950496 | GTCACATCTAAGATCCCACAAATATAT | 57.050 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2291 | 2621 | 8.938801 | AGATCCCACAAATATATAATGCAACA | 57.061 | 30.769 | 0.00 | 0.00 | 0.00 | 3.33 |
2292 | 2622 | 9.365906 | AGATCCCACAAATATATAATGCAACAA | 57.634 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2293 | 2623 | 9.410556 | GATCCCACAAATATATAATGCAACAAC | 57.589 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
2294 | 2624 | 8.298729 | TCCCACAAATATATAATGCAACAACA | 57.701 | 30.769 | 0.00 | 0.00 | 0.00 | 3.33 |
2295 | 2625 | 8.753133 | TCCCACAAATATATAATGCAACAACAA | 58.247 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2296 | 2626 | 9.033481 | CCCACAAATATATAATGCAACAACAAG | 57.967 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2297 | 2627 | 9.800433 | CCACAAATATATAATGCAACAACAAGA | 57.200 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
2345 | 2675 | 7.482169 | AGACCACAAAATAGAGTAGACATCA | 57.518 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2346 | 2676 | 7.551585 | AGACCACAAAATAGAGTAGACATCAG | 58.448 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2347 | 2677 | 6.109359 | ACCACAAAATAGAGTAGACATCAGC | 58.891 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2348 | 2678 | 6.070538 | ACCACAAAATAGAGTAGACATCAGCT | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 4.24 |
2349 | 2679 | 6.820656 | CCACAAAATAGAGTAGACATCAGCTT | 59.179 | 38.462 | 0.00 | 0.00 | 0.00 | 3.74 |
2350 | 2680 | 7.981789 | CCACAAAATAGAGTAGACATCAGCTTA | 59.018 | 37.037 | 0.00 | 0.00 | 0.00 | 3.09 |
2351 | 2681 | 9.029243 | CACAAAATAGAGTAGACATCAGCTTAG | 57.971 | 37.037 | 0.00 | 0.00 | 0.00 | 2.18 |
2352 | 2682 | 8.972127 | ACAAAATAGAGTAGACATCAGCTTAGA | 58.028 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
2353 | 2683 | 9.979578 | CAAAATAGAGTAGACATCAGCTTAGAT | 57.020 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2363 | 2693 | 5.781210 | CATCAGCTTAGATGTGTCCTAGA | 57.219 | 43.478 | 5.99 | 0.00 | 40.35 | 2.43 |
2364 | 2694 | 6.343716 | CATCAGCTTAGATGTGTCCTAGAT | 57.656 | 41.667 | 5.99 | 0.00 | 40.35 | 1.98 |
2365 | 2695 | 7.459795 | CATCAGCTTAGATGTGTCCTAGATA | 57.540 | 40.000 | 5.99 | 0.00 | 40.35 | 1.98 |
2366 | 2696 | 7.537715 | CATCAGCTTAGATGTGTCCTAGATAG | 58.462 | 42.308 | 5.99 | 0.00 | 40.35 | 2.08 |
2367 | 2697 | 6.842676 | TCAGCTTAGATGTGTCCTAGATAGA | 58.157 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2368 | 2698 | 6.712998 | TCAGCTTAGATGTGTCCTAGATAGAC | 59.287 | 42.308 | 0.00 | 0.00 | 34.72 | 2.59 |
2369 | 2699 | 6.007703 | AGCTTAGATGTGTCCTAGATAGACC | 58.992 | 44.000 | 0.00 | 0.00 | 33.09 | 3.85 |
2370 | 2700 | 5.184287 | GCTTAGATGTGTCCTAGATAGACCC | 59.816 | 48.000 | 0.00 | 0.00 | 33.09 | 4.46 |
2388 | 2718 | 6.139679 | AGACCCATTCCAATTACTCTTCAA | 57.860 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
2449 | 2781 | 3.386402 | AGCTTCCTAGTGCAGAAGGATAC | 59.614 | 47.826 | 15.90 | 11.58 | 41.50 | 2.24 |
2450 | 2782 | 3.133003 | GCTTCCTAGTGCAGAAGGATACA | 59.867 | 47.826 | 15.90 | 3.14 | 41.50 | 2.29 |
2451 | 2783 | 4.383118 | GCTTCCTAGTGCAGAAGGATACAA | 60.383 | 45.833 | 15.90 | 2.83 | 41.50 | 2.41 |
2452 | 2784 | 5.344743 | TTCCTAGTGCAGAAGGATACAAG | 57.655 | 43.478 | 15.90 | 0.00 | 41.50 | 3.16 |
2453 | 2785 | 4.353777 | TCCTAGTGCAGAAGGATACAAGT | 58.646 | 43.478 | 12.05 | 0.00 | 36.97 | 3.16 |
2454 | 2786 | 4.777896 | TCCTAGTGCAGAAGGATACAAGTT | 59.222 | 41.667 | 12.05 | 0.00 | 36.97 | 2.66 |
2455 | 2787 | 5.955959 | TCCTAGTGCAGAAGGATACAAGTTA | 59.044 | 40.000 | 12.05 | 0.00 | 36.97 | 2.24 |
2456 | 2788 | 6.096987 | TCCTAGTGCAGAAGGATACAAGTTAG | 59.903 | 42.308 | 12.05 | 0.00 | 36.97 | 2.34 |
2457 | 2789 | 5.746990 | AGTGCAGAAGGATACAAGTTAGT | 57.253 | 39.130 | 0.00 | 0.00 | 41.41 | 2.24 |
2458 | 2790 | 6.852420 | AGTGCAGAAGGATACAAGTTAGTA | 57.148 | 37.500 | 0.00 | 0.00 | 41.41 | 1.82 |
2459 | 2791 | 6.631962 | AGTGCAGAAGGATACAAGTTAGTAC | 58.368 | 40.000 | 0.00 | 0.00 | 41.41 | 2.73 |
2460 | 2792 | 6.437793 | AGTGCAGAAGGATACAAGTTAGTACT | 59.562 | 38.462 | 0.00 | 0.00 | 41.41 | 2.73 |
2461 | 2793 | 6.752815 | GTGCAGAAGGATACAAGTTAGTACTC | 59.247 | 42.308 | 0.00 | 0.00 | 41.41 | 2.59 |
2462 | 2794 | 6.127423 | TGCAGAAGGATACAAGTTAGTACTCC | 60.127 | 42.308 | 0.00 | 0.00 | 41.41 | 3.85 |
2463 | 2795 | 6.683360 | GCAGAAGGATACAAGTTAGTACTCCC | 60.683 | 46.154 | 0.00 | 0.00 | 41.41 | 4.30 |
2464 | 2796 | 6.608002 | CAGAAGGATACAAGTTAGTACTCCCT | 59.392 | 42.308 | 0.00 | 0.00 | 41.41 | 4.20 |
2465 | 2797 | 6.834969 | AGAAGGATACAAGTTAGTACTCCCTC | 59.165 | 42.308 | 0.00 | 0.00 | 41.41 | 4.30 |
2466 | 2798 | 5.456779 | AGGATACAAGTTAGTACTCCCTCC | 58.543 | 45.833 | 0.00 | 0.00 | 41.41 | 4.30 |
2467 | 2799 | 4.277921 | GGATACAAGTTAGTACTCCCTCCG | 59.722 | 50.000 | 0.00 | 0.00 | 31.99 | 4.63 |
2468 | 2800 | 3.166560 | ACAAGTTAGTACTCCCTCCGT | 57.833 | 47.619 | 0.00 | 0.00 | 31.99 | 4.69 |
2469 | 2801 | 3.504375 | ACAAGTTAGTACTCCCTCCGTT | 58.496 | 45.455 | 0.00 | 0.00 | 31.99 | 4.44 |
2470 | 2802 | 3.509184 | ACAAGTTAGTACTCCCTCCGTTC | 59.491 | 47.826 | 0.00 | 0.00 | 31.99 | 3.95 |
2471 | 2803 | 2.732763 | AGTTAGTACTCCCTCCGTTCC | 58.267 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
2472 | 2804 | 2.042162 | AGTTAGTACTCCCTCCGTTCCA | 59.958 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2473 | 2805 | 2.827921 | GTTAGTACTCCCTCCGTTCCAA | 59.172 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2474 | 2806 | 2.019807 | AGTACTCCCTCCGTTCCAAA | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2475 | 2807 | 2.332117 | AGTACTCCCTCCGTTCCAAAA | 58.668 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
2476 | 2808 | 2.910977 | AGTACTCCCTCCGTTCCAAAAT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
2477 | 2809 | 4.098894 | AGTACTCCCTCCGTTCCAAAATA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2478 | 2810 | 3.345508 | ACTCCCTCCGTTCCAAAATAC | 57.654 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
2479 | 2811 | 2.910977 | ACTCCCTCCGTTCCAAAATACT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
2480 | 2812 | 3.329814 | ACTCCCTCCGTTCCAAAATACTT | 59.670 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2481 | 2813 | 3.681593 | TCCCTCCGTTCCAAAATACTTG | 58.318 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
2482 | 2814 | 3.328343 | TCCCTCCGTTCCAAAATACTTGA | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2483 | 2815 | 3.439129 | CCCTCCGTTCCAAAATACTTGAC | 59.561 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
2484 | 2816 | 4.324267 | CCTCCGTTCCAAAATACTTGACT | 58.676 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
2485 | 2817 | 4.760204 | CCTCCGTTCCAAAATACTTGACTT | 59.240 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2486 | 2818 | 5.240844 | CCTCCGTTCCAAAATACTTGACTTT | 59.759 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2487 | 2819 | 6.308371 | TCCGTTCCAAAATACTTGACTTTC | 57.692 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
2488 | 2820 | 5.823570 | TCCGTTCCAAAATACTTGACTTTCA | 59.176 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2489 | 2821 | 6.488683 | TCCGTTCCAAAATACTTGACTTTCAT | 59.511 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2490 | 2822 | 7.013846 | TCCGTTCCAAAATACTTGACTTTCATT | 59.986 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2491 | 2823 | 7.651704 | CCGTTCCAAAATACTTGACTTTCATTT | 59.348 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2492 | 2824 | 8.479280 | CGTTCCAAAATACTTGACTTTCATTTG | 58.521 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2493 | 2825 | 9.313118 | GTTCCAAAATACTTGACTTTCATTTGT | 57.687 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2494 | 2826 | 9.883142 | TTCCAAAATACTTGACTTTCATTTGTT | 57.117 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
2495 | 2827 | 9.528018 | TCCAAAATACTTGACTTTCATTTGTTC | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
2496 | 2828 | 9.311916 | CCAAAATACTTGACTTTCATTTGTTCA | 57.688 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
2503 | 2835 | 8.667463 | ACTTGACTTTCATTTGTTCAAAAATGG | 58.333 | 29.630 | 9.17 | 0.00 | 44.28 | 3.16 |
2504 | 2836 | 8.783833 | TTGACTTTCATTTGTTCAAAAATGGA | 57.216 | 26.923 | 9.17 | 0.00 | 44.28 | 3.41 |
2505 | 2837 | 8.961294 | TGACTTTCATTTGTTCAAAAATGGAT | 57.039 | 26.923 | 9.17 | 0.00 | 44.28 | 3.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
306 | 309 | 2.958016 | GGTACGTATGTGCCGCGG | 60.958 | 66.667 | 24.05 | 24.05 | 41.19 | 6.46 |
315 | 318 | 1.760613 | CCAGGTGGTGATGGTACGTAT | 59.239 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
516 | 526 | 0.255604 | ACCATCCATCATGCGTCCAA | 59.744 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
683 | 716 | 1.603456 | GTAGAGTAGGGGTAGGCGTC | 58.397 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
684 | 717 | 0.184692 | GGTAGAGTAGGGGTAGGCGT | 59.815 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
685 | 718 | 0.539207 | GGGTAGAGTAGGGGTAGGCG | 60.539 | 65.000 | 0.00 | 0.00 | 0.00 | 5.52 |
686 | 719 | 0.539207 | CGGGTAGAGTAGGGGTAGGC | 60.539 | 65.000 | 0.00 | 0.00 | 0.00 | 3.93 |
687 | 720 | 0.539207 | GCGGGTAGAGTAGGGGTAGG | 60.539 | 65.000 | 0.00 | 0.00 | 0.00 | 3.18 |
688 | 721 | 0.888285 | CGCGGGTAGAGTAGGGGTAG | 60.888 | 65.000 | 0.00 | 0.00 | 0.00 | 3.18 |
689 | 722 | 1.149174 | CGCGGGTAGAGTAGGGGTA | 59.851 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
692 | 725 | 2.123982 | ACCGCGGGTAGAGTAGGG | 60.124 | 66.667 | 31.76 | 0.00 | 32.11 | 3.53 |
809 | 852 | 0.615850 | CTCCTTTCTCCCACAGGGAC | 59.384 | 60.000 | 0.00 | 0.00 | 46.17 | 4.46 |
811 | 854 | 0.908198 | CTCTCCTTTCTCCCACAGGG | 59.092 | 60.000 | 0.00 | 0.00 | 46.11 | 4.45 |
812 | 855 | 0.251634 | GCTCTCCTTTCTCCCACAGG | 59.748 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
813 | 856 | 0.251634 | GGCTCTCCTTTCTCCCACAG | 59.748 | 60.000 | 0.00 | 0.00 | 0.00 | 3.66 |
814 | 857 | 0.473694 | TGGCTCTCCTTTCTCCCACA | 60.474 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
815 | 858 | 0.251634 | CTGGCTCTCCTTTCTCCCAC | 59.748 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
816 | 859 | 0.178891 | ACTGGCTCTCCTTTCTCCCA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
817 | 860 | 0.251634 | CACTGGCTCTCCTTTCTCCC | 59.748 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
818 | 861 | 1.206849 | CTCACTGGCTCTCCTTTCTCC | 59.793 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
819 | 862 | 2.175202 | TCTCACTGGCTCTCCTTTCTC | 58.825 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
820 | 863 | 2.317371 | TCTCACTGGCTCTCCTTTCT | 57.683 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
823 | 866 | 1.203237 | TCCTTCTCACTGGCTCTCCTT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
900 | 948 | 1.435515 | CTGGCGAGTGGTAGCTCTC | 59.564 | 63.158 | 12.82 | 12.82 | 33.55 | 3.20 |
901 | 949 | 2.716017 | GCTGGCGAGTGGTAGCTCT | 61.716 | 63.158 | 0.00 | 0.00 | 33.55 | 4.09 |
932 | 980 | 0.600255 | CGAGTGCGGTGGAGTTTCTT | 60.600 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
951 | 999 | 0.676782 | AGTATGGTTGGCGTCTTGGC | 60.677 | 55.000 | 0.00 | 0.00 | 45.12 | 4.52 |
952 | 1000 | 1.086696 | CAGTATGGTTGGCGTCTTGG | 58.913 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
953 | 1001 | 1.464608 | CACAGTATGGTTGGCGTCTTG | 59.535 | 52.381 | 0.00 | 0.00 | 43.62 | 3.02 |
954 | 1002 | 1.346395 | TCACAGTATGGTTGGCGTCTT | 59.654 | 47.619 | 0.00 | 0.00 | 43.62 | 3.01 |
955 | 1003 | 0.973632 | TCACAGTATGGTTGGCGTCT | 59.026 | 50.000 | 0.00 | 0.00 | 43.62 | 4.18 |
956 | 1004 | 1.732259 | CTTCACAGTATGGTTGGCGTC | 59.268 | 52.381 | 0.00 | 0.00 | 43.62 | 5.19 |
957 | 1005 | 1.071699 | ACTTCACAGTATGGTTGGCGT | 59.928 | 47.619 | 0.00 | 0.00 | 43.62 | 5.68 |
983 | 1031 | 0.468214 | CATGACGCCTCTCCCTCCTA | 60.468 | 60.000 | 0.00 | 0.00 | 0.00 | 2.94 |
984 | 1032 | 1.760086 | CATGACGCCTCTCCCTCCT | 60.760 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
985 | 1033 | 2.818132 | CATGACGCCTCTCCCTCC | 59.182 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1149 | 1216 | 1.080025 | CGTCTTCTTCCACGGGTCC | 60.080 | 63.158 | 0.00 | 0.00 | 32.19 | 4.46 |
1571 | 1644 | 0.984995 | AAGTTGGAGCTCTACACCCC | 59.015 | 55.000 | 14.64 | 0.00 | 0.00 | 4.95 |
1572 | 1645 | 1.066071 | GGAAGTTGGAGCTCTACACCC | 60.066 | 57.143 | 14.64 | 12.44 | 0.00 | 4.61 |
1587 | 1660 | 3.846588 | ACCATGATCCTACACTTGGAAGT | 59.153 | 43.478 | 0.00 | 0.00 | 40.60 | 3.01 |
1627 | 1700 | 3.305199 | CCCCGCTAAATTACCTCTACTCG | 60.305 | 52.174 | 0.00 | 0.00 | 0.00 | 4.18 |
1685 | 1762 | 1.631405 | TGCTAAAATGGGCAGCAGTT | 58.369 | 45.000 | 0.00 | 0.00 | 40.26 | 3.16 |
1728 | 1807 | 2.869897 | TCAGCAAAAACGAACACCAAC | 58.130 | 42.857 | 0.00 | 0.00 | 0.00 | 3.77 |
1975 | 2305 | 6.307800 | ACAATTTATAAACACAATGACGCTGC | 59.692 | 34.615 | 0.00 | 0.00 | 0.00 | 5.25 |
2034 | 2364 | 9.316730 | TGGACGTTTCGCTTATAAATTTATACT | 57.683 | 29.630 | 15.92 | 0.00 | 0.00 | 2.12 |
2094 | 2424 | 8.976471 | CATCACTTCTCACATATCATTACAGAC | 58.024 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2158 | 2488 | 9.256477 | CTGCTAGACAACCGAATAACAATAATA | 57.744 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
2159 | 2489 | 7.769044 | ACTGCTAGACAACCGAATAACAATAAT | 59.231 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
2160 | 2490 | 7.101054 | ACTGCTAGACAACCGAATAACAATAA | 58.899 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2202 | 2532 | 7.823745 | AGACAAACTGAATTGGAATTGTACT | 57.176 | 32.000 | 0.00 | 0.00 | 34.56 | 2.73 |
2208 | 2538 | 8.859090 | TGTGAATTAGACAAACTGAATTGGAAT | 58.141 | 29.630 | 0.00 | 0.00 | 34.56 | 3.01 |
2209 | 2539 | 8.231692 | TGTGAATTAGACAAACTGAATTGGAA | 57.768 | 30.769 | 0.00 | 0.00 | 34.56 | 3.53 |
2210 | 2540 | 7.815840 | TGTGAATTAGACAAACTGAATTGGA | 57.184 | 32.000 | 0.00 | 0.00 | 34.56 | 3.53 |
2211 | 2541 | 8.517878 | AGATGTGAATTAGACAAACTGAATTGG | 58.482 | 33.333 | 0.00 | 0.00 | 34.56 | 3.16 |
2216 | 2546 | 9.591792 | CATCTAGATGTGAATTAGACAAACTGA | 57.408 | 33.333 | 22.42 | 0.00 | 34.23 | 3.41 |
2245 | 2575 | 9.396022 | GGATCTTAGATGTGACATCCTTAAAAA | 57.604 | 33.333 | 21.05 | 6.81 | 0.00 | 1.94 |
2246 | 2576 | 7.993183 | GGGATCTTAGATGTGACATCCTTAAAA | 59.007 | 37.037 | 21.05 | 2.86 | 31.97 | 1.52 |
2247 | 2577 | 7.127186 | TGGGATCTTAGATGTGACATCCTTAAA | 59.873 | 37.037 | 21.05 | 10.18 | 31.97 | 1.52 |
2248 | 2578 | 6.615316 | TGGGATCTTAGATGTGACATCCTTAA | 59.385 | 38.462 | 21.05 | 13.11 | 31.97 | 1.85 |
2249 | 2579 | 6.042093 | GTGGGATCTTAGATGTGACATCCTTA | 59.958 | 42.308 | 21.05 | 6.22 | 31.97 | 2.69 |
2250 | 2580 | 4.971282 | TGGGATCTTAGATGTGACATCCTT | 59.029 | 41.667 | 21.05 | 7.22 | 31.97 | 3.36 |
2251 | 2581 | 4.346418 | GTGGGATCTTAGATGTGACATCCT | 59.654 | 45.833 | 21.05 | 11.44 | 31.97 | 3.24 |
2252 | 2582 | 4.101585 | TGTGGGATCTTAGATGTGACATCC | 59.898 | 45.833 | 21.05 | 6.28 | 0.00 | 3.51 |
2253 | 2583 | 5.282055 | TGTGGGATCTTAGATGTGACATC | 57.718 | 43.478 | 17.46 | 17.46 | 0.00 | 3.06 |
2254 | 2584 | 5.698741 | TTGTGGGATCTTAGATGTGACAT | 57.301 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
2255 | 2585 | 5.497464 | TTTGTGGGATCTTAGATGTGACA | 57.503 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
2256 | 2586 | 9.950496 | ATATATTTGTGGGATCTTAGATGTGAC | 57.050 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
2265 | 2595 | 9.365906 | TGTTGCATTATATATTTGTGGGATCTT | 57.634 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
2266 | 2596 | 8.938801 | TGTTGCATTATATATTTGTGGGATCT | 57.061 | 30.769 | 0.00 | 0.00 | 0.00 | 2.75 |
2267 | 2597 | 9.410556 | GTTGTTGCATTATATATTTGTGGGATC | 57.589 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
2268 | 2598 | 8.922237 | TGTTGTTGCATTATATATTTGTGGGAT | 58.078 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
2269 | 2599 | 8.298729 | TGTTGTTGCATTATATATTTGTGGGA | 57.701 | 30.769 | 0.00 | 0.00 | 0.00 | 4.37 |
2270 | 2600 | 8.939201 | TTGTTGTTGCATTATATATTTGTGGG | 57.061 | 30.769 | 0.00 | 0.00 | 0.00 | 4.61 |
2271 | 2601 | 9.800433 | TCTTGTTGTTGCATTATATATTTGTGG | 57.200 | 29.630 | 0.00 | 0.00 | 0.00 | 4.17 |
2319 | 2649 | 9.201989 | TGATGTCTACTCTATTTTGTGGTCTAT | 57.798 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2320 | 2650 | 8.589701 | TGATGTCTACTCTATTTTGTGGTCTA | 57.410 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
2321 | 2651 | 7.482169 | TGATGTCTACTCTATTTTGTGGTCT | 57.518 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2322 | 2652 | 6.256757 | GCTGATGTCTACTCTATTTTGTGGTC | 59.743 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
2323 | 2653 | 6.070538 | AGCTGATGTCTACTCTATTTTGTGGT | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 4.16 |
2324 | 2654 | 6.344500 | AGCTGATGTCTACTCTATTTTGTGG | 58.656 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2325 | 2655 | 7.840342 | AAGCTGATGTCTACTCTATTTTGTG | 57.160 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2326 | 2656 | 8.972127 | TCTAAGCTGATGTCTACTCTATTTTGT | 58.028 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2327 | 2657 | 9.979578 | ATCTAAGCTGATGTCTACTCTATTTTG | 57.020 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
2328 | 2658 | 9.979578 | CATCTAAGCTGATGTCTACTCTATTTT | 57.020 | 33.333 | 5.99 | 0.00 | 39.05 | 1.82 |
2341 | 2671 | 5.781210 | TCTAGGACACATCTAAGCTGATG | 57.219 | 43.478 | 11.48 | 11.48 | 46.61 | 3.07 |
2342 | 2672 | 7.393234 | GTCTATCTAGGACACATCTAAGCTGAT | 59.607 | 40.741 | 0.00 | 0.00 | 34.23 | 2.90 |
2343 | 2673 | 6.712998 | GTCTATCTAGGACACATCTAAGCTGA | 59.287 | 42.308 | 0.00 | 0.00 | 34.23 | 4.26 |
2344 | 2674 | 6.072175 | GGTCTATCTAGGACACATCTAAGCTG | 60.072 | 46.154 | 0.00 | 0.00 | 35.61 | 4.24 |
2345 | 2675 | 6.007703 | GGTCTATCTAGGACACATCTAAGCT | 58.992 | 44.000 | 0.00 | 0.00 | 35.61 | 3.74 |
2346 | 2676 | 5.184287 | GGGTCTATCTAGGACACATCTAAGC | 59.816 | 48.000 | 0.00 | 0.00 | 37.11 | 3.09 |
2347 | 2677 | 6.307776 | TGGGTCTATCTAGGACACATCTAAG | 58.692 | 44.000 | 0.00 | 0.00 | 41.46 | 2.18 |
2348 | 2678 | 6.275692 | TGGGTCTATCTAGGACACATCTAA | 57.724 | 41.667 | 0.00 | 0.00 | 41.46 | 2.10 |
2349 | 2679 | 5.924769 | TGGGTCTATCTAGGACACATCTA | 57.075 | 43.478 | 0.00 | 0.00 | 41.46 | 1.98 |
2350 | 2680 | 4.816048 | TGGGTCTATCTAGGACACATCT | 57.184 | 45.455 | 0.00 | 0.00 | 41.46 | 2.90 |
2354 | 2684 | 4.223953 | TGGAATGGGTCTATCTAGGACAC | 58.776 | 47.826 | 0.00 | 0.00 | 37.60 | 3.67 |
2355 | 2685 | 4.552883 | TGGAATGGGTCTATCTAGGACA | 57.447 | 45.455 | 0.00 | 0.00 | 35.61 | 4.02 |
2356 | 2686 | 6.441088 | AATTGGAATGGGTCTATCTAGGAC | 57.559 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2357 | 2687 | 7.313731 | AGTAATTGGAATGGGTCTATCTAGGA | 58.686 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
2358 | 2688 | 7.456269 | AGAGTAATTGGAATGGGTCTATCTAGG | 59.544 | 40.741 | 0.00 | 0.00 | 0.00 | 3.02 |
2359 | 2689 | 8.429237 | AGAGTAATTGGAATGGGTCTATCTAG | 57.571 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
2360 | 2690 | 8.798975 | AAGAGTAATTGGAATGGGTCTATCTA | 57.201 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
2361 | 2691 | 7.348274 | TGAAGAGTAATTGGAATGGGTCTATCT | 59.652 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
2362 | 2692 | 7.509546 | TGAAGAGTAATTGGAATGGGTCTATC | 58.490 | 38.462 | 0.00 | 0.00 | 0.00 | 2.08 |
2363 | 2693 | 7.451731 | TGAAGAGTAATTGGAATGGGTCTAT | 57.548 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2364 | 2694 | 6.884472 | TGAAGAGTAATTGGAATGGGTCTA | 57.116 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
2365 | 2695 | 5.779241 | TGAAGAGTAATTGGAATGGGTCT | 57.221 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
2366 | 2696 | 7.410120 | AATTGAAGAGTAATTGGAATGGGTC | 57.590 | 36.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2367 | 2697 | 7.454380 | TGAAATTGAAGAGTAATTGGAATGGGT | 59.546 | 33.333 | 0.00 | 0.00 | 0.00 | 4.51 |
2368 | 2698 | 7.839907 | TGAAATTGAAGAGTAATTGGAATGGG | 58.160 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
2369 | 2699 | 9.880157 | ATTGAAATTGAAGAGTAATTGGAATGG | 57.120 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
2388 | 2718 | 4.637534 | AGTTCTGACATAGCGCATTGAAAT | 59.362 | 37.500 | 11.47 | 0.36 | 0.00 | 2.17 |
2449 | 2781 | 3.119209 | GGAACGGAGGGAGTACTAACTTG | 60.119 | 52.174 | 0.00 | 0.00 | 35.56 | 3.16 |
2450 | 2782 | 3.095332 | GGAACGGAGGGAGTACTAACTT | 58.905 | 50.000 | 0.00 | 0.00 | 35.56 | 2.66 |
2451 | 2783 | 2.042162 | TGGAACGGAGGGAGTACTAACT | 59.958 | 50.000 | 0.00 | 0.00 | 39.21 | 2.24 |
2452 | 2784 | 2.450476 | TGGAACGGAGGGAGTACTAAC | 58.550 | 52.381 | 0.00 | 0.00 | 0.00 | 2.34 |
2453 | 2785 | 2.905415 | TGGAACGGAGGGAGTACTAA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2454 | 2786 | 2.905415 | TTGGAACGGAGGGAGTACTA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2455 | 2787 | 2.019807 | TTTGGAACGGAGGGAGTACT | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2456 | 2788 | 2.845363 | TTTTGGAACGGAGGGAGTAC | 57.155 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2457 | 2789 | 4.098894 | AGTATTTTGGAACGGAGGGAGTA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2458 | 2790 | 2.910977 | AGTATTTTGGAACGGAGGGAGT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
2459 | 2791 | 3.629142 | AGTATTTTGGAACGGAGGGAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
2460 | 2792 | 3.328343 | TCAAGTATTTTGGAACGGAGGGA | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2461 | 2793 | 3.439129 | GTCAAGTATTTTGGAACGGAGGG | 59.561 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2462 | 2794 | 4.324267 | AGTCAAGTATTTTGGAACGGAGG | 58.676 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2463 | 2795 | 5.941948 | AAGTCAAGTATTTTGGAACGGAG | 57.058 | 39.130 | 0.00 | 0.00 | 0.00 | 4.63 |
2464 | 2796 | 5.823570 | TGAAAGTCAAGTATTTTGGAACGGA | 59.176 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2465 | 2797 | 6.067263 | TGAAAGTCAAGTATTTTGGAACGG | 57.933 | 37.500 | 0.00 | 0.00 | 0.00 | 4.44 |
2466 | 2798 | 8.479280 | CAAATGAAAGTCAAGTATTTTGGAACG | 58.521 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
2467 | 2799 | 9.313118 | ACAAATGAAAGTCAAGTATTTTGGAAC | 57.687 | 29.630 | 0.00 | 0.00 | 30.08 | 3.62 |
2468 | 2800 | 9.883142 | AACAAATGAAAGTCAAGTATTTTGGAA | 57.117 | 25.926 | 0.00 | 0.00 | 30.08 | 3.53 |
2469 | 2801 | 9.528018 | GAACAAATGAAAGTCAAGTATTTTGGA | 57.472 | 29.630 | 0.00 | 0.00 | 30.08 | 3.53 |
2470 | 2802 | 9.311916 | TGAACAAATGAAAGTCAAGTATTTTGG | 57.688 | 29.630 | 0.00 | 0.00 | 30.08 | 3.28 |
2477 | 2809 | 8.667463 | CCATTTTTGAACAAATGAAAGTCAAGT | 58.333 | 29.630 | 7.56 | 0.00 | 43.99 | 3.16 |
2478 | 2810 | 8.881743 | TCCATTTTTGAACAAATGAAAGTCAAG | 58.118 | 29.630 | 7.56 | 0.00 | 43.99 | 3.02 |
2479 | 2811 | 8.783833 | TCCATTTTTGAACAAATGAAAGTCAA | 57.216 | 26.923 | 7.56 | 0.00 | 43.99 | 3.18 |
2480 | 2812 | 8.961294 | ATCCATTTTTGAACAAATGAAAGTCA | 57.039 | 26.923 | 7.56 | 0.00 | 43.99 | 3.41 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.