Multiple sequence alignment - TraesCS1D01G313900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G313900 chr1D 100.000 8241 0 0 1 8241 409065532 409057292 0.000000e+00 15219.0
1 TraesCS1D01G313900 chr1D 87.629 388 30 8 7497 7882 80641026 80641397 1.270000e-117 435.0
2 TraesCS1D01G313900 chr1D 84.282 439 35 16 5070 5494 409060400 409059982 1.670000e-106 398.0
3 TraesCS1D01G313900 chr1D 84.354 441 31 20 5133 5551 409060463 409060039 1.670000e-106 398.0
4 TraesCS1D01G313900 chr1D 87.660 235 18 3 7560 7785 253073400 253073168 6.340000e-66 263.0
5 TraesCS1D01G313900 chr1D 88.205 195 15 3 7999 8185 19010738 19010932 8.320000e-55 226.0
6 TraesCS1D01G313900 chr1D 99.083 109 1 0 7829 7937 409057665 409057557 6.530000e-46 196.0
7 TraesCS1D01G313900 chr1D 99.083 109 1 0 7868 7976 409057704 409057596 6.530000e-46 196.0
8 TraesCS1D01G313900 chr1D 98.571 70 1 0 7829 7898 409057626 409057557 3.120000e-24 124.0
9 TraesCS1D01G313900 chr1D 98.571 70 1 0 7907 7976 409057704 409057635 3.120000e-24 124.0
10 TraesCS1D01G313900 chr1D 90.741 54 4 1 7907 7960 80641345 80641397 4.130000e-08 71.3
11 TraesCS1D01G313900 chr1D 100.000 36 0 0 115 150 409065383 409065348 5.340000e-07 67.6
12 TraesCS1D01G313900 chr1D 100.000 36 0 0 150 185 409065418 409065383 5.340000e-07 67.6
13 TraesCS1D01G313900 chr1D 88.889 54 5 1 7868 7921 80641345 80641397 1.920000e-06 65.8
14 TraesCS1D01G313900 chr1D 90.196 51 0 3 4528 4578 182524491 182524446 2.480000e-05 62.1
15 TraesCS1D01G313900 chr1D 100.000 31 0 0 7946 7976 409057704 409057674 3.210000e-04 58.4
16 TraesCS1D01G313900 chr1D 96.774 31 1 0 7946 7976 80641345 80641375 1.500000e-02 52.8
17 TraesCS1D01G313900 chr5B 94.509 2477 85 24 3050 5494 627405858 627403401 0.000000e+00 3773.0
18 TraesCS1D01G313900 chr5B 93.230 1093 46 14 3300 4365 174865306 174864215 0.000000e+00 1583.0
19 TraesCS1D01G313900 chr5B 97.046 914 23 2 3050 3961 623819429 623818518 0.000000e+00 1535.0
20 TraesCS1D01G313900 chr5B 91.051 447 10 18 5133 5562 627403823 627403390 1.990000e-160 577.0
21 TraesCS1D01G313900 chr5B 84.394 487 33 29 4819 5288 174863797 174863337 9.820000e-119 438.0
22 TraesCS1D01G313900 chr5B 90.526 190 15 1 7999 8185 641837216 641837027 1.780000e-61 248.0
23 TraesCS1D01G313900 chr5B 95.122 123 5 1 5166 5288 174862863 174862742 8.440000e-45 193.0
24 TraesCS1D01G313900 chr5B 91.667 132 5 2 4709 4834 174864218 174864087 2.360000e-40 178.0
25 TraesCS1D01G313900 chr5B 96.512 86 3 0 8156 8241 627403389 627403304 8.620000e-30 143.0
26 TraesCS1D01G313900 chr7D 95.392 2257 45 30 5133 7381 629592594 629590389 0.000000e+00 3537.0
27 TraesCS1D01G313900 chr7D 97.953 1954 21 4 3053 4990 629594583 629592633 0.000000e+00 3369.0
28 TraesCS1D01G313900 chr7D 92.418 1886 72 28 5196 7041 118222750 118224604 0.000000e+00 2625.0
29 TraesCS1D01G313900 chr7D 93.206 1678 61 21 3053 4712 118220158 118221800 0.000000e+00 2418.0
30 TraesCS1D01G313900 chr7D 90.227 706 20 12 4700 5382 118221820 118222499 0.000000e+00 876.0
31 TraesCS1D01G313900 chr7D 89.952 627 35 20 4833 5451 118222510 118223116 0.000000e+00 784.0
32 TraesCS1D01G313900 chr7D 98.611 432 6 0 5020 5451 629592644 629592213 0.000000e+00 765.0
33 TraesCS1D01G313900 chr7D 89.974 379 8 17 5133 5494 118222750 118223115 5.830000e-126 462.0
34 TraesCS1D01G313900 chr7D 83.819 309 30 18 5070 5371 629592531 629592236 8.150000e-70 276.0
35 TraesCS1D01G313900 chr7D 81.686 344 31 18 5133 5469 118222167 118222485 2.950000e-64 257.0
36 TraesCS1D01G313900 chr7D 81.272 283 36 14 5070 5347 118222229 118222499 6.480000e-51 213.0
37 TraesCS1D01G313900 chr5A 92.401 2303 165 5 5559 7857 492887650 492889946 0.000000e+00 3275.0
38 TraesCS1D01G313900 chr5A 92.344 2299 161 7 5565 7858 492841876 492839588 0.000000e+00 3256.0
39 TraesCS1D01G313900 chr6A 92.388 2299 165 5 5565 7858 485356925 485354632 0.000000e+00 3267.0
40 TraesCS1D01G313900 chr6A 97.123 869 23 1 3100 3966 8207446 8206578 0.000000e+00 1465.0
41 TraesCS1D01G313900 chr6A 96.778 869 26 1 3100 3966 86412834 86411966 0.000000e+00 1448.0
42 TraesCS1D01G313900 chr6A 90.444 586 31 6 3052 3636 47678014 47677453 0.000000e+00 749.0
43 TraesCS1D01G313900 chr6A 96.850 127 3 1 3802 3928 47676982 47676857 2.330000e-50 211.0
44 TraesCS1D01G313900 chr6A 98.182 110 2 0 3931 4040 47676729 47676620 8.440000e-45 193.0
45 TraesCS1D01G313900 chrUn 92.422 2296 161 8 5568 7858 299395863 299393576 0.000000e+00 3264.0
46 TraesCS1D01G313900 chrUn 92.321 2305 164 8 5559 7858 299400329 299402625 0.000000e+00 3264.0
47 TraesCS1D01G313900 chrUn 92.422 2296 161 8 5568 7858 309625152 309622865 0.000000e+00 3264.0
48 TraesCS1D01G313900 chrUn 96.501 1772 23 6 3431 5167 366670661 366668894 0.000000e+00 2892.0
49 TraesCS1D01G313900 chrUn 94.697 396 5 1 4452 4831 479218941 479219336 1.180000e-167 601.0
50 TraesCS1D01G313900 chrUn 90.323 217 8 8 5133 5349 366668991 366668788 1.050000e-68 272.0
51 TraesCS1D01G313900 chrUn 96.512 86 3 0 8156 8241 382208010 382207925 8.620000e-30 143.0
52 TraesCS1D01G313900 chrUn 100.000 30 0 0 7946 7975 299393605 299393576 1.000000e-03 56.5
53 TraesCS1D01G313900 chrUn 100.000 30 0 0 7907 7936 299393605 299393576 1.000000e-03 56.5
54 TraesCS1D01G313900 chrUn 100.000 30 0 0 7868 7897 299393605 299393576 1.000000e-03 56.5
55 TraesCS1D01G313900 chrUn 100.000 30 0 0 7946 7975 299402596 299402625 1.000000e-03 56.5
56 TraesCS1D01G313900 chrUn 100.000 30 0 0 7946 7975 309622894 309622865 1.000000e-03 56.5
57 TraesCS1D01G313900 chr1A 93.579 2118 92 13 955 3031 505279001 505276887 0.000000e+00 3118.0
58 TraesCS1D01G313900 chr1A 93.396 1484 78 11 6449 7930 49242422 49243887 0.000000e+00 2180.0
59 TraesCS1D01G313900 chr1A 97.353 869 21 1 3100 3966 574392094 574391226 0.000000e+00 1476.0
60 TraesCS1D01G313900 chr1A 97.008 869 24 1 3100 3966 42195629 42194761 0.000000e+00 1459.0
61 TraesCS1D01G313900 chr1A 89.698 796 61 11 148 927 505280823 505280033 0.000000e+00 996.0
62 TraesCS1D01G313900 chr1A 90.256 585 32 6 3053 3636 343665965 343666525 0.000000e+00 741.0
63 TraesCS1D01G313900 chr1A 90.476 210 15 1 2845 3054 295546058 295545854 1.050000e-68 272.0
64 TraesCS1D01G313900 chr1A 96.748 123 4 0 8119 8241 49243886 49244008 1.080000e-48 206.0
65 TraesCS1D01G313900 chr1A 99.065 107 1 0 3931 4037 343667250 343667356 8.440000e-45 193.0
66 TraesCS1D01G313900 chr1A 79.570 279 32 9 154 432 505279935 505279682 8.500000e-40 176.0
67 TraesCS1D01G313900 chr1A 97.059 102 2 1 7868 7969 49243787 49243887 3.960000e-38 171.0
68 TraesCS1D01G313900 chr1A 91.011 89 5 2 7999 8084 20922821 20922909 5.230000e-22 117.0
69 TraesCS1D01G313900 chr1A 95.714 70 3 0 7907 7976 49243787 49243856 6.760000e-21 113.0
70 TraesCS1D01G313900 chr1A 94.366 71 3 1 4078 4148 100278253 100278184 3.150000e-19 108.0
71 TraesCS1D01G313900 chr1A 96.825 63 1 1 7829 7891 49243826 49243887 4.070000e-18 104.0
72 TraesCS1D01G313900 chr1A 90.000 80 7 1 8118 8197 20922908 20922986 1.460000e-17 102.0
73 TraesCS1D01G313900 chr1B 91.974 2143 118 21 954 3054 551029054 551026924 0.000000e+00 2955.0
74 TraesCS1D01G313900 chr1B 97.001 867 26 0 3100 3966 666870393 666869527 0.000000e+00 1458.0
75 TraesCS1D01G313900 chr1B 83.000 800 93 21 153 934 551029891 551029117 0.000000e+00 684.0
76 TraesCS1D01G313900 chr1B 87.000 200 20 3 7999 8192 28319916 28320115 3.870000e-53 220.0
77 TraesCS1D01G313900 chr1B 84.574 188 19 5 7999 8183 28371980 28372160 2.360000e-40 178.0
78 TraesCS1D01G313900 chr1B 88.489 139 10 2 4700 4832 643781376 643781514 6.620000e-36 163.0
79 TraesCS1D01G313900 chr1B 87.500 56 1 4 4528 4578 36924745 36924799 8.930000e-05 60.2
80 TraesCS1D01G313900 chr1B 88.235 51 1 3 4528 4578 160017447 160017492 1.000000e-03 56.5
81 TraesCS1D01G313900 chr4B 92.348 1908 82 18 5133 7021 25915676 25917538 0.000000e+00 2656.0
82 TraesCS1D01G313900 chr4B 90.273 586 32 6 3052 3636 311282205 311281644 0.000000e+00 743.0
83 TraesCS1D01G313900 chr4B 90.102 586 33 6 3052 3636 412027429 412027990 0.000000e+00 737.0
84 TraesCS1D01G313900 chr4B 87.970 399 21 13 4078 4455 147083934 147083542 5.870000e-121 446.0
85 TraesCS1D01G313900 chr4B 84.055 439 38 19 5042 5472 25915648 25916062 2.160000e-105 394.0
86 TraesCS1D01G313900 chr4B 93.077 260 9 4 4792 5042 25915348 25915607 1.010000e-98 372.0
87 TraesCS1D01G313900 chr4B 96.063 127 4 1 3802 3928 311281172 311281047 1.080000e-48 206.0
88 TraesCS1D01G313900 chr4B 96.063 127 4 1 3802 3928 412028462 412028587 1.080000e-48 206.0
89 TraesCS1D01G313900 chr4B 98.182 110 2 0 3931 4040 311280919 311280810 8.440000e-45 193.0
90 TraesCS1D01G313900 chr4B 99.065 107 1 0 3931 4037 412028715 412028821 8.440000e-45 193.0
91 TraesCS1D01G313900 chr4D 97.143 1190 15 3 3053 4226 814310 815496 0.000000e+00 1991.0
92 TraesCS1D01G313900 chr4D 84.314 204 29 3 579 780 9493241 9493039 6.530000e-46 196.0
93 TraesCS1D01G313900 chr4D 100.000 31 0 0 4529 4559 347173749 347173719 3.210000e-04 58.4
94 TraesCS1D01G313900 chr5D 90.290 587 30 7 3051 3636 545951897 545951337 0.000000e+00 743.0
95 TraesCS1D01G313900 chr5D 87.500 312 27 4 7483 7785 545347183 545347491 4.730000e-92 350.0
96 TraesCS1D01G313900 chr5D 98.113 159 3 0 7338 7496 15321297 15321139 2.270000e-70 278.0
97 TraesCS1D01G313900 chr6D 90.256 585 32 6 3053 3636 312060311 312060871 0.000000e+00 741.0
98 TraesCS1D01G313900 chr6D 96.923 195 5 1 4220 4413 312061940 312062134 7.980000e-85 326.0
99 TraesCS1D01G313900 chr6D 96.063 127 4 1 3802 3928 312061343 312061468 1.080000e-48 206.0
100 TraesCS1D01G313900 chr6D 99.065 107 1 0 3931 4037 312061596 312061702 8.440000e-45 193.0
101 TraesCS1D01G313900 chr3D 92.857 308 13 6 6954 7261 546264629 546264331 9.820000e-119 438.0
102 TraesCS1D01G313900 chr3B 84.987 393 42 11 4078 4455 779170366 779170756 4.670000e-102 383.0
103 TraesCS1D01G313900 chr3B 86.503 163 8 1 4515 4663 779170772 779170934 5.120000e-37 167.0
104 TraesCS1D01G313900 chr3B 100.000 30 0 0 7259 7288 539682403 539682374 1.000000e-03 56.5
105 TraesCS1D01G313900 chr3B 88.235 51 1 3 4528 4578 590829438 590829393 1.000000e-03 56.5
106 TraesCS1D01G313900 chr6B 88.889 261 19 8 4198 4455 720406514 720406767 6.210000e-81 313.0
107 TraesCS1D01G313900 chr6B 88.770 187 14 2 2845 3031 702629308 702629129 1.080000e-53 222.0
108 TraesCS1D01G313900 chr6B 92.308 130 8 2 7614 7742 82012499 82012371 5.080000e-42 183.0
109 TraesCS1D01G313900 chr6B 88.489 139 10 2 4700 4832 635775425 635775563 6.620000e-36 163.0
110 TraesCS1D01G313900 chr3A 90.952 210 14 1 2845 3054 397832406 397832202 2.270000e-70 278.0
111 TraesCS1D01G313900 chr7A 90.476 210 15 1 2845 3054 18370280 18370484 1.050000e-68 272.0
112 TraesCS1D01G313900 chr7A 90.476 210 15 1 2845 3054 563338039 563337835 1.050000e-68 272.0
113 TraesCS1D01G313900 chr7A 94.366 71 3 1 4078 4148 653426475 653426406 3.150000e-19 108.0
114 TraesCS1D01G313900 chr2A 90.476 210 15 1 2845 3054 709592206 709592002 1.050000e-68 272.0
115 TraesCS1D01G313900 chr2A 76.031 388 63 19 495 857 13402555 13402937 3.060000e-39 174.0
116 TraesCS1D01G313900 chr4A 80.669 269 33 11 634 889 722345961 722345699 3.040000e-44 191.0
117 TraesCS1D01G313900 chr4A 85.802 162 15 5 4700 4854 649063854 649064014 1.840000e-36 165.0
118 TraesCS1D01G313900 chr2B 82.710 214 22 8 654 857 231353995 231353787 8.500000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G313900 chr1D 409057292 409065532 8240 True 15219.000000 15219 100.000000 1 8241 1 chr1D.!!$R3 8240
1 TraesCS1D01G313900 chr1D 409057557 409060463 2906 True 213.485714 398 94.849143 5070 7976 7 chr1D.!!$R4 2906
2 TraesCS1D01G313900 chr5B 623818518 623819429 911 True 1535.000000 1535 97.046000 3050 3961 1 chr5B.!!$R1 911
3 TraesCS1D01G313900 chr5B 627403304 627405858 2554 True 1497.666667 3773 94.024000 3050 8241 3 chr5B.!!$R4 5191
4 TraesCS1D01G313900 chr5B 174862742 174865306 2564 True 598.000000 1583 91.103250 3300 5288 4 chr5B.!!$R3 1988
5 TraesCS1D01G313900 chr7D 629590389 629594583 4194 True 1986.750000 3537 93.943750 3053 7381 4 chr7D.!!$R1 4328
6 TraesCS1D01G313900 chr7D 118220158 118224604 4446 False 1090.714286 2625 88.390714 3053 7041 7 chr7D.!!$F1 3988
7 TraesCS1D01G313900 chr5A 492887650 492889946 2296 False 3275.000000 3275 92.401000 5559 7857 1 chr5A.!!$F1 2298
8 TraesCS1D01G313900 chr5A 492839588 492841876 2288 True 3256.000000 3256 92.344000 5565 7858 1 chr5A.!!$R1 2293
9 TraesCS1D01G313900 chr6A 485354632 485356925 2293 True 3267.000000 3267 92.388000 5565 7858 1 chr6A.!!$R3 2293
10 TraesCS1D01G313900 chr6A 8206578 8207446 868 True 1465.000000 1465 97.123000 3100 3966 1 chr6A.!!$R1 866
11 TraesCS1D01G313900 chr6A 86411966 86412834 868 True 1448.000000 1448 96.778000 3100 3966 1 chr6A.!!$R2 866
12 TraesCS1D01G313900 chr6A 47676620 47678014 1394 True 384.333333 749 95.158667 3052 4040 3 chr6A.!!$R4 988
13 TraesCS1D01G313900 chrUn 299400329 299402625 2296 False 1660.250000 3264 96.160500 5559 7975 2 chrUn.!!$F2 2416
14 TraesCS1D01G313900 chrUn 309622865 309625152 2287 True 1660.250000 3264 96.211000 5568 7975 2 chrUn.!!$R3 2407
15 TraesCS1D01G313900 chrUn 366668788 366670661 1873 True 1582.000000 2892 93.412000 3431 5349 2 chrUn.!!$R4 1918
16 TraesCS1D01G313900 chrUn 299393576 299395863 2287 True 858.375000 3264 98.105500 5568 7975 4 chrUn.!!$R2 2407
17 TraesCS1D01G313900 chr1A 574391226 574392094 868 True 1476.000000 1476 97.353000 3100 3966 1 chr1A.!!$R4 866
18 TraesCS1D01G313900 chr1A 42194761 42195629 868 True 1459.000000 1459 97.008000 3100 3966 1 chr1A.!!$R1 866
19 TraesCS1D01G313900 chr1A 505276887 505280823 3936 True 1430.000000 3118 87.615667 148 3031 3 chr1A.!!$R5 2883
20 TraesCS1D01G313900 chr1A 49242422 49244008 1586 False 554.800000 2180 95.948400 6449 8241 5 chr1A.!!$F2 1792
21 TraesCS1D01G313900 chr1A 343665965 343667356 1391 False 467.000000 741 94.660500 3053 4037 2 chr1A.!!$F3 984
22 TraesCS1D01G313900 chr1B 551026924 551029891 2967 True 1819.500000 2955 87.487000 153 3054 2 chr1B.!!$R2 2901
23 TraesCS1D01G313900 chr1B 666869527 666870393 866 True 1458.000000 1458 97.001000 3100 3966 1 chr1B.!!$R1 866
24 TraesCS1D01G313900 chr4B 25915348 25917538 2190 False 1140.666667 2656 89.826667 4792 7021 3 chr4B.!!$F1 2229
25 TraesCS1D01G313900 chr4B 311280810 311282205 1395 True 380.666667 743 94.839333 3052 4040 3 chr4B.!!$R2 988
26 TraesCS1D01G313900 chr4B 412027429 412028821 1392 False 378.666667 737 95.076667 3052 4037 3 chr4B.!!$F2 985
27 TraesCS1D01G313900 chr4D 814310 815496 1186 False 1991.000000 1991 97.143000 3053 4226 1 chr4D.!!$F1 1173
28 TraesCS1D01G313900 chr5D 545951337 545951897 560 True 743.000000 743 90.290000 3051 3636 1 chr5D.!!$R2 585
29 TraesCS1D01G313900 chr6D 312060311 312062134 1823 False 366.500000 741 95.576750 3053 4413 4 chr6D.!!$F1 1360
30 TraesCS1D01G313900 chr3B 779170366 779170934 568 False 275.000000 383 85.745000 4078 4663 2 chr3B.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.033504 ACGTGAGGTGACGCTTTGAT 59.966 50.000 0.00 0.00 43.33 2.57 F
102 103 0.108804 TCGGCAGAACGAACATCTCC 60.109 55.000 0.00 0.00 40.34 3.71 F
142 143 0.176219 ACCAAGACAACAACCGTCGA 59.824 50.000 0.00 0.00 38.46 4.20 F
143 144 0.580104 CCAAGACAACAACCGTCGAC 59.420 55.000 5.18 5.18 38.46 4.20 F
942 1966 0.898326 GGAAGGACCCGTTTTGCCAT 60.898 55.000 0.00 0.00 0.00 4.40 F
2446 3496 1.815003 GCACCTGGGATCAAAGAACTG 59.185 52.381 0.00 0.00 0.00 3.16 F
2876 3966 0.719465 GGGTCACGCTTACGATGTTG 59.281 55.000 0.00 0.00 43.93 3.33 F
2997 4089 2.816087 GTGTGTACCGAGTTAGGAGTGA 59.184 50.000 0.00 0.00 34.73 3.41 F
3289 4408 3.073735 ACCAGCCGCCTCTCTCTG 61.074 66.667 0.00 0.00 0.00 3.35 F
5460 8996 0.111061 ACAAGCATCACAAGCCTCCA 59.889 50.000 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1208 2258 0.246360 TTGAGGAAATGCGCGAGAGA 59.754 50.000 12.10 0.00 0.00 3.10 R
1657 2707 0.886490 CAAAGGACTGCTTGACGGCT 60.886 55.000 0.00 0.00 0.00 5.52 R
2133 3183 1.340991 ACACCAATATGTCCAGCACCC 60.341 52.381 0.00 0.00 0.00 4.61 R
2415 3465 2.202690 CAGGTGCATTGCATGGCG 60.203 61.111 15.49 0.42 41.91 5.69 R
2534 3588 0.106149 GCATCCCTACGATTTCCGGT 59.894 55.000 0.00 0.00 43.93 5.28 R
4822 6615 7.559897 TGAAAAGGTTTGGTTAACAGAGAAGAT 59.440 33.333 8.10 0.00 38.55 2.40 R
5174 7968 5.002516 TGTGTTGCAGTATGATGATTGTGA 58.997 37.500 0.00 0.00 39.69 3.58 R
5175 7969 5.299582 TGTGTTGCAGTATGATGATTGTG 57.700 39.130 0.00 0.00 39.69 3.33 R
5484 9020 0.038892 GCTTGTGGTGGATGCTTGTG 60.039 55.000 0.00 0.00 0.00 3.33 R
7977 11612 6.759827 GTCGGACATAGCCTGTTCTAATTAAA 59.240 38.462 2.62 0.00 38.54 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.603110 CCATCAATAACGTGAGGTGACG 59.397 50.000 0.00 0.00 45.09 4.35
22 23 1.705256 TCAATAACGTGAGGTGACGC 58.295 50.000 0.00 0.00 43.33 5.19
23 24 1.271379 TCAATAACGTGAGGTGACGCT 59.729 47.619 0.00 0.00 43.33 5.07
24 25 2.066262 CAATAACGTGAGGTGACGCTT 58.934 47.619 0.00 0.00 43.33 4.68
25 26 2.450609 ATAACGTGAGGTGACGCTTT 57.549 45.000 0.00 0.00 43.33 3.51
26 27 1.493772 TAACGTGAGGTGACGCTTTG 58.506 50.000 0.00 0.00 43.33 2.77
27 28 0.179094 AACGTGAGGTGACGCTTTGA 60.179 50.000 0.00 0.00 43.33 2.69
28 29 0.033504 ACGTGAGGTGACGCTTTGAT 59.966 50.000 0.00 0.00 43.33 2.57
29 30 0.716108 CGTGAGGTGACGCTTTGATC 59.284 55.000 0.00 0.00 31.56 2.92
30 31 0.716108 GTGAGGTGACGCTTTGATCG 59.284 55.000 0.00 0.00 0.00 3.69
31 32 0.389817 TGAGGTGACGCTTTGATCGG 60.390 55.000 0.00 0.00 0.00 4.18
32 33 1.079127 AGGTGACGCTTTGATCGGG 60.079 57.895 0.00 0.00 0.00 5.14
33 34 1.079405 GGTGACGCTTTGATCGGGA 60.079 57.895 0.00 0.00 0.00 5.14
34 35 0.462047 GGTGACGCTTTGATCGGGAT 60.462 55.000 0.00 0.00 0.00 3.85
35 36 1.369625 GTGACGCTTTGATCGGGATT 58.630 50.000 0.00 0.00 0.00 3.01
36 37 1.062587 GTGACGCTTTGATCGGGATTG 59.937 52.381 0.00 0.00 0.00 2.67
37 38 1.338674 TGACGCTTTGATCGGGATTGT 60.339 47.619 0.00 0.00 0.00 2.71
38 39 1.327764 GACGCTTTGATCGGGATTGTC 59.672 52.381 0.00 0.00 0.00 3.18
39 40 0.301687 CGCTTTGATCGGGATTGTCG 59.698 55.000 0.00 0.00 0.00 4.35
40 41 1.369625 GCTTTGATCGGGATTGTCGT 58.630 50.000 0.00 0.00 0.00 4.34
41 42 2.546778 GCTTTGATCGGGATTGTCGTA 58.453 47.619 0.00 0.00 0.00 3.43
42 43 2.540101 GCTTTGATCGGGATTGTCGTAG 59.460 50.000 0.00 0.00 0.00 3.51
43 44 2.882927 TTGATCGGGATTGTCGTAGG 57.117 50.000 0.00 0.00 0.00 3.18
44 45 2.061509 TGATCGGGATTGTCGTAGGA 57.938 50.000 0.00 0.00 0.00 2.94
45 46 2.380941 TGATCGGGATTGTCGTAGGAA 58.619 47.619 0.00 0.00 0.00 3.36
46 47 2.963101 TGATCGGGATTGTCGTAGGAAT 59.037 45.455 0.00 0.00 0.00 3.01
47 48 2.882927 TCGGGATTGTCGTAGGAATG 57.117 50.000 0.00 0.00 0.00 2.67
48 49 2.104967 TCGGGATTGTCGTAGGAATGT 58.895 47.619 0.00 0.00 0.00 2.71
49 50 2.159156 TCGGGATTGTCGTAGGAATGTG 60.159 50.000 0.00 0.00 0.00 3.21
50 51 1.940613 GGGATTGTCGTAGGAATGTGC 59.059 52.381 0.00 0.00 0.00 4.57
51 52 2.420129 GGGATTGTCGTAGGAATGTGCT 60.420 50.000 0.00 0.00 0.00 4.40
52 53 3.270877 GGATTGTCGTAGGAATGTGCTT 58.729 45.455 0.00 0.00 0.00 3.91
53 54 3.063997 GGATTGTCGTAGGAATGTGCTTG 59.936 47.826 0.00 0.00 0.00 4.01
54 55 3.394674 TTGTCGTAGGAATGTGCTTGA 57.605 42.857 0.00 0.00 0.00 3.02
55 56 3.610040 TGTCGTAGGAATGTGCTTGAT 57.390 42.857 0.00 0.00 0.00 2.57
56 57 3.937814 TGTCGTAGGAATGTGCTTGATT 58.062 40.909 0.00 0.00 0.00 2.57
57 58 3.684305 TGTCGTAGGAATGTGCTTGATTG 59.316 43.478 0.00 0.00 0.00 2.67
58 59 3.063997 GTCGTAGGAATGTGCTTGATTGG 59.936 47.826 0.00 0.00 0.00 3.16
59 60 2.223340 CGTAGGAATGTGCTTGATTGGC 60.223 50.000 0.00 0.00 0.00 4.52
60 61 1.188863 AGGAATGTGCTTGATTGGCC 58.811 50.000 0.00 0.00 0.00 5.36
61 62 1.188863 GGAATGTGCTTGATTGGCCT 58.811 50.000 3.32 0.00 0.00 5.19
62 63 1.551883 GGAATGTGCTTGATTGGCCTT 59.448 47.619 3.32 0.00 0.00 4.35
63 64 2.417787 GGAATGTGCTTGATTGGCCTTC 60.418 50.000 3.32 1.19 0.00 3.46
64 65 1.188863 ATGTGCTTGATTGGCCTTCC 58.811 50.000 3.32 0.00 0.00 3.46
65 66 0.178967 TGTGCTTGATTGGCCTTCCA 60.179 50.000 3.32 0.00 41.55 3.53
66 67 1.188863 GTGCTTGATTGGCCTTCCAT 58.811 50.000 3.32 0.00 43.05 3.41
67 68 1.551883 GTGCTTGATTGGCCTTCCATT 59.448 47.619 3.32 0.00 43.05 3.16
68 69 1.551430 TGCTTGATTGGCCTTCCATTG 59.449 47.619 3.32 0.00 43.05 2.82
69 70 1.741394 GCTTGATTGGCCTTCCATTGC 60.741 52.381 3.32 3.36 43.05 3.56
70 71 1.829222 CTTGATTGGCCTTCCATTGCT 59.171 47.619 3.32 0.00 43.05 3.91
71 72 1.187974 TGATTGGCCTTCCATTGCTG 58.812 50.000 3.32 0.00 43.05 4.41
72 73 0.179092 GATTGGCCTTCCATTGCTGC 60.179 55.000 3.32 0.00 43.05 5.25
73 74 0.616679 ATTGGCCTTCCATTGCTGCT 60.617 50.000 3.32 0.00 43.05 4.24
74 75 0.832983 TTGGCCTTCCATTGCTGCTT 60.833 50.000 3.32 0.00 43.05 3.91
75 76 1.217244 GGCCTTCCATTGCTGCTTG 59.783 57.895 0.00 0.00 0.00 4.01
76 77 1.447314 GCCTTCCATTGCTGCTTGC 60.447 57.895 0.00 0.00 43.25 4.01
86 87 3.611433 GCTGCTTGCATAGTTTCGG 57.389 52.632 0.00 0.00 42.31 4.30
87 88 0.524180 GCTGCTTGCATAGTTTCGGC 60.524 55.000 0.00 0.00 42.31 5.54
88 89 0.804364 CTGCTTGCATAGTTTCGGCA 59.196 50.000 0.00 0.00 35.41 5.69
89 90 0.804364 TGCTTGCATAGTTTCGGCAG 59.196 50.000 0.00 0.00 38.97 4.85
90 91 1.086696 GCTTGCATAGTTTCGGCAGA 58.913 50.000 0.00 0.00 38.97 4.26
91 92 1.468520 GCTTGCATAGTTTCGGCAGAA 59.531 47.619 0.00 0.00 38.97 3.02
92 93 2.729156 GCTTGCATAGTTTCGGCAGAAC 60.729 50.000 0.00 0.00 38.97 3.01
93 94 1.075542 TGCATAGTTTCGGCAGAACG 58.924 50.000 0.00 0.00 35.86 3.95
94 95 1.337354 TGCATAGTTTCGGCAGAACGA 60.337 47.619 0.00 0.00 41.76 3.85
100 101 3.906660 TTCGGCAGAACGAACATCT 57.093 47.368 0.00 0.00 46.68 2.90
101 102 1.710013 TTCGGCAGAACGAACATCTC 58.290 50.000 0.00 0.00 46.68 2.75
102 103 0.108804 TCGGCAGAACGAACATCTCC 60.109 55.000 0.00 0.00 40.34 3.71
103 104 0.389817 CGGCAGAACGAACATCTCCA 60.390 55.000 0.00 0.00 35.47 3.86
104 105 1.079503 GGCAGAACGAACATCTCCAC 58.920 55.000 0.00 0.00 0.00 4.02
105 106 1.079503 GCAGAACGAACATCTCCACC 58.920 55.000 0.00 0.00 0.00 4.61
106 107 1.338200 GCAGAACGAACATCTCCACCT 60.338 52.381 0.00 0.00 0.00 4.00
107 108 2.872038 GCAGAACGAACATCTCCACCTT 60.872 50.000 0.00 0.00 0.00 3.50
108 109 3.403038 CAGAACGAACATCTCCACCTTT 58.597 45.455 0.00 0.00 0.00 3.11
109 110 4.566004 CAGAACGAACATCTCCACCTTTA 58.434 43.478 0.00 0.00 0.00 1.85
110 111 4.994852 CAGAACGAACATCTCCACCTTTAA 59.005 41.667 0.00 0.00 0.00 1.52
111 112 5.468746 CAGAACGAACATCTCCACCTTTAAA 59.531 40.000 0.00 0.00 0.00 1.52
112 113 5.469084 AGAACGAACATCTCCACCTTTAAAC 59.531 40.000 0.00 0.00 0.00 2.01
113 114 4.710324 ACGAACATCTCCACCTTTAAACA 58.290 39.130 0.00 0.00 0.00 2.83
114 115 4.514066 ACGAACATCTCCACCTTTAAACAC 59.486 41.667 0.00 0.00 0.00 3.32
115 116 4.755123 CGAACATCTCCACCTTTAAACACT 59.245 41.667 0.00 0.00 0.00 3.55
116 117 5.929992 CGAACATCTCCACCTTTAAACACTA 59.070 40.000 0.00 0.00 0.00 2.74
117 118 6.594159 CGAACATCTCCACCTTTAAACACTAT 59.406 38.462 0.00 0.00 0.00 2.12
118 119 7.201530 CGAACATCTCCACCTTTAAACACTATC 60.202 40.741 0.00 0.00 0.00 2.08
119 120 6.106673 ACATCTCCACCTTTAAACACTATCG 58.893 40.000 0.00 0.00 0.00 2.92
120 121 5.733620 TCTCCACCTTTAAACACTATCGT 57.266 39.130 0.00 0.00 0.00 3.73
121 122 5.717119 TCTCCACCTTTAAACACTATCGTC 58.283 41.667 0.00 0.00 0.00 4.20
122 123 5.244402 TCTCCACCTTTAAACACTATCGTCA 59.756 40.000 0.00 0.00 0.00 4.35
123 124 5.856156 TCCACCTTTAAACACTATCGTCAA 58.144 37.500 0.00 0.00 0.00 3.18
124 125 5.697633 TCCACCTTTAAACACTATCGTCAAC 59.302 40.000 0.00 0.00 0.00 3.18
125 126 5.106830 CCACCTTTAAACACTATCGTCAACC 60.107 44.000 0.00 0.00 0.00 3.77
126 127 5.467399 CACCTTTAAACACTATCGTCAACCA 59.533 40.000 0.00 0.00 0.00 3.67
127 128 6.017770 CACCTTTAAACACTATCGTCAACCAA 60.018 38.462 0.00 0.00 0.00 3.67
128 129 6.204108 ACCTTTAAACACTATCGTCAACCAAG 59.796 38.462 0.00 0.00 0.00 3.61
129 130 6.425721 CCTTTAAACACTATCGTCAACCAAGA 59.574 38.462 0.00 0.00 0.00 3.02
130 131 6.774354 TTAAACACTATCGTCAACCAAGAC 57.226 37.500 0.00 0.00 35.19 3.01
131 132 4.330944 AACACTATCGTCAACCAAGACA 57.669 40.909 0.00 0.00 38.43 3.41
132 133 4.330944 ACACTATCGTCAACCAAGACAA 57.669 40.909 0.00 0.00 38.43 3.18
133 134 4.056050 ACACTATCGTCAACCAAGACAAC 58.944 43.478 0.00 0.00 38.43 3.32
134 135 4.055360 CACTATCGTCAACCAAGACAACA 58.945 43.478 0.00 0.00 38.43 3.33
135 136 4.509970 CACTATCGTCAACCAAGACAACAA 59.490 41.667 0.00 0.00 38.43 2.83
136 137 3.963383 ATCGTCAACCAAGACAACAAC 57.037 42.857 0.00 0.00 38.43 3.32
137 138 2.011222 TCGTCAACCAAGACAACAACC 58.989 47.619 0.00 0.00 38.43 3.77
138 139 1.267832 CGTCAACCAAGACAACAACCG 60.268 52.381 0.00 0.00 38.43 4.44
139 140 1.741145 GTCAACCAAGACAACAACCGT 59.259 47.619 0.00 0.00 38.40 4.83
140 141 2.011222 TCAACCAAGACAACAACCGTC 58.989 47.619 0.00 0.00 0.00 4.79
141 142 1.011333 AACCAAGACAACAACCGTCG 58.989 50.000 0.00 0.00 38.46 5.12
142 143 0.176219 ACCAAGACAACAACCGTCGA 59.824 50.000 0.00 0.00 38.46 4.20
143 144 0.580104 CCAAGACAACAACCGTCGAC 59.420 55.000 5.18 5.18 38.46 4.20
144 145 1.282817 CAAGACAACAACCGTCGACA 58.717 50.000 17.16 0.00 38.46 4.35
145 146 1.661617 CAAGACAACAACCGTCGACAA 59.338 47.619 17.16 0.00 38.46 3.18
146 147 2.234300 AGACAACAACCGTCGACAAT 57.766 45.000 17.16 0.00 38.46 2.71
147 148 3.374220 AGACAACAACCGTCGACAATA 57.626 42.857 17.16 0.00 38.46 1.90
148 149 3.054878 AGACAACAACCGTCGACAATAC 58.945 45.455 17.16 0.00 38.46 1.89
149 150 2.137523 ACAACAACCGTCGACAATACC 58.862 47.619 17.16 0.00 0.00 2.73
150 151 2.224113 ACAACAACCGTCGACAATACCT 60.224 45.455 17.16 0.00 0.00 3.08
151 152 3.005684 ACAACAACCGTCGACAATACCTA 59.994 43.478 17.16 0.00 0.00 3.08
186 187 0.971386 ACAACCGTCGACAATACCCT 59.029 50.000 17.16 0.00 0.00 4.34
283 285 2.398588 ACTCACCAAACTCCTCTCACA 58.601 47.619 0.00 0.00 0.00 3.58
290 292 1.040646 AACTCCTCTCACAACTGCGA 58.959 50.000 0.00 0.00 0.00 5.10
319 321 2.480555 CCAAGGCATCGTCGTTGC 59.519 61.111 17.94 17.94 39.41 4.17
325 327 1.501741 GCATCGTCGTTGCCATTGT 59.498 52.632 15.83 0.00 33.95 2.71
419 421 6.593807 AGTTACCGCCCATAACATGTTATAA 58.406 36.000 26.59 14.90 35.39 0.98
514 519 4.669197 CGGTTTTTCAAGCTCATAAGACCG 60.669 45.833 16.64 16.64 40.02 4.79
591 599 9.996554 AAAATGGAGAATAAACCGAAGAAAAAT 57.003 25.926 0.00 0.00 0.00 1.82
692 703 3.683281 GCCCAATAACCAACTCGACCATA 60.683 47.826 0.00 0.00 0.00 2.74
708 719 7.660208 ACTCGACCATACTACTTTGTTTTCAAT 59.340 33.333 0.00 0.00 39.70 2.57
819 1796 4.241555 GGCCGATGAGCCGATGGT 62.242 66.667 0.00 0.00 44.57 3.55
823 1800 2.845550 CGATGAGCCGATGGTCCGA 61.846 63.158 0.00 0.00 38.24 4.55
825 1802 2.701163 GATGAGCCGATGGTCCGACC 62.701 65.000 10.96 10.96 38.24 4.79
857 1844 2.741092 GACAGGCTCACCGGTTCA 59.259 61.111 2.97 0.00 45.19 3.18
917 1911 4.501229 GCAAATCAGTCAATTTGTGGTGGA 60.501 41.667 10.14 0.00 44.72 4.02
927 1921 2.656947 TTGTGGTGGAAAGAGGGAAG 57.343 50.000 0.00 0.00 0.00 3.46
942 1966 0.898326 GGAAGGACCCGTTTTGCCAT 60.898 55.000 0.00 0.00 0.00 4.40
1189 2239 2.927856 ATCCCGCCCATATCGCCA 60.928 61.111 0.00 0.00 0.00 5.69
1372 2422 3.357079 CACCTGCGCTCCACCAAC 61.357 66.667 9.73 0.00 0.00 3.77
2133 3183 1.821258 GGCTCCTACCAAGGTACCG 59.179 63.158 6.18 0.00 44.09 4.02
2162 3212 3.697166 GACATATTGGTGTCAAGGGGTT 58.303 45.455 2.40 0.00 46.04 4.11
2367 3417 3.009115 TCTTTCCCCTGGCCTCGG 61.009 66.667 3.32 4.22 0.00 4.63
2446 3496 1.815003 GCACCTGGGATCAAAGAACTG 59.185 52.381 0.00 0.00 0.00 3.16
2516 3570 6.270000 TCTGACTTTTGAAGTGGGAAGAGATA 59.730 38.462 0.00 0.00 43.03 1.98
2522 3576 3.449018 TGAAGTGGGAAGAGATAGCTGAC 59.551 47.826 0.00 0.00 0.00 3.51
2533 3587 4.404073 AGAGATAGCTGACGGATGAAACTT 59.596 41.667 0.00 0.00 0.00 2.66
2534 3588 5.594725 AGAGATAGCTGACGGATGAAACTTA 59.405 40.000 0.00 0.00 0.00 2.24
2577 3631 2.514592 GCAGCCTGCGCTATTCCA 60.515 61.111 9.73 0.00 46.25 3.53
2580 3634 1.072159 AGCCTGCGCTATTCCATCC 59.928 57.895 9.73 0.00 46.08 3.51
2588 3642 3.202906 GCGCTATTCCATCCAGTGTAAA 58.797 45.455 0.00 0.00 0.00 2.01
2597 3651 7.639113 TTCCATCCAGTGTAAATATTTCACC 57.361 36.000 18.84 6.41 33.21 4.02
2658 3712 4.986659 GCTTGCATCCCTTTTAAGCATATG 59.013 41.667 0.00 0.00 42.35 1.78
2659 3713 5.534207 TTGCATCCCTTTTAAGCATATGG 57.466 39.130 4.56 0.00 34.87 2.74
2743 3804 5.565439 GCTCTGTAAAGTGGCATGTTTGAAT 60.565 40.000 7.77 0.00 0.00 2.57
2748 3809 5.754543 AAAGTGGCATGTTTGAATTTTGG 57.245 34.783 0.00 0.00 0.00 3.28
2763 3824 8.648698 TTGAATTTTGGACCATGAATTCTAGA 57.351 30.769 27.25 17.98 38.61 2.43
2785 3846 9.699703 CTAGAAAGTTCAGGATATAAAGTAGGC 57.300 37.037 0.00 0.00 0.00 3.93
2818 3885 3.458189 AGCATGTTATAGCTGAACGACC 58.542 45.455 0.00 0.00 40.13 4.79
2860 3950 3.230134 ACACATGCTTGTTATGTTGGGT 58.770 40.909 1.83 0.00 36.67 4.51
2869 3959 3.068560 TGTTATGTTGGGTCACGCTTAC 58.931 45.455 0.00 0.00 0.00 2.34
2876 3966 0.719465 GGGTCACGCTTACGATGTTG 59.281 55.000 0.00 0.00 43.93 3.33
2905 3995 4.227618 ACCTAAGGGTTCGGCACT 57.772 55.556 0.00 0.00 44.73 4.40
2997 4089 2.816087 GTGTGTACCGAGTTAGGAGTGA 59.184 50.000 0.00 0.00 34.73 3.41
3032 4124 5.824904 AGCATTGGTAGCTATCAGTTTTG 57.175 39.130 6.82 5.54 41.32 2.44
3043 4135 9.587772 GTAGCTATCAGTTTTGATCAGTTTAGA 57.412 33.333 0.00 0.00 42.97 2.10
3289 4408 3.073735 ACCAGCCGCCTCTCTCTG 61.074 66.667 0.00 0.00 0.00 3.35
4822 6615 4.469586 TGGCAGTATTGTGTCATCCTCTTA 59.530 41.667 0.00 0.00 0.00 2.10
5143 7937 8.637099 TCATCATACTCCAACACAATTCAAAAA 58.363 29.630 0.00 0.00 0.00 1.94
5144 7938 8.702438 CATCATACTCCAACACAATTCAAAAAC 58.298 33.333 0.00 0.00 0.00 2.43
5145 7939 7.776107 TCATACTCCAACACAATTCAAAAACA 58.224 30.769 0.00 0.00 0.00 2.83
5146 7940 8.253810 TCATACTCCAACACAATTCAAAAACAA 58.746 29.630 0.00 0.00 0.00 2.83
5147 7941 6.720012 ACTCCAACACAATTCAAAAACAAC 57.280 33.333 0.00 0.00 0.00 3.32
5148 7942 6.226787 ACTCCAACACAATTCAAAAACAACA 58.773 32.000 0.00 0.00 0.00 3.33
5149 7943 6.708054 ACTCCAACACAATTCAAAAACAACAA 59.292 30.769 0.00 0.00 0.00 2.83
5150 7944 7.095271 ACTCCAACACAATTCAAAAACAACAAG 60.095 33.333 0.00 0.00 0.00 3.16
5151 7945 6.148480 TCCAACACAATTCAAAAACAACAAGG 59.852 34.615 0.00 0.00 0.00 3.61
5152 7946 6.148480 CCAACACAATTCAAAAACAACAAGGA 59.852 34.615 0.00 0.00 0.00 3.36
5153 7947 6.966435 ACACAATTCAAAAACAACAAGGAG 57.034 33.333 0.00 0.00 0.00 3.69
5154 7948 6.463360 ACACAATTCAAAAACAACAAGGAGT 58.537 32.000 0.00 0.00 0.00 3.85
5155 7949 6.934083 ACACAATTCAAAAACAACAAGGAGTT 59.066 30.769 0.00 0.00 42.42 3.01
5156 7950 8.091449 ACACAATTCAAAAACAACAAGGAGTTA 58.909 29.630 0.00 0.00 38.74 2.24
5157 7951 8.379902 CACAATTCAAAAACAACAAGGAGTTAC 58.620 33.333 0.00 0.00 38.74 2.50
5158 7952 8.091449 ACAATTCAAAAACAACAAGGAGTTACA 58.909 29.630 0.00 0.00 38.74 2.41
5159 7953 8.930760 CAATTCAAAAACAACAAGGAGTTACAA 58.069 29.630 0.00 0.00 38.74 2.41
5160 7954 9.495572 AATTCAAAAACAACAAGGAGTTACAAA 57.504 25.926 0.00 0.00 38.74 2.83
5161 7955 9.665719 ATTCAAAAACAACAAGGAGTTACAAAT 57.334 25.926 0.00 0.00 38.74 2.32
5194 7988 6.367686 TGATCACAATCATCATACTGCAAC 57.632 37.500 0.00 0.00 36.98 4.17
5195 7989 5.881443 TGATCACAATCATCATACTGCAACA 59.119 36.000 0.00 0.00 36.98 3.33
5196 7990 5.550232 TCACAATCATCATACTGCAACAC 57.450 39.130 0.00 0.00 0.00 3.32
5197 7991 5.002516 TCACAATCATCATACTGCAACACA 58.997 37.500 0.00 0.00 0.00 3.72
5198 7992 5.472820 TCACAATCATCATACTGCAACACAA 59.527 36.000 0.00 0.00 0.00 3.33
5199 7993 6.151480 TCACAATCATCATACTGCAACACAAT 59.849 34.615 0.00 0.00 0.00 2.71
5200 7994 6.809689 CACAATCATCATACTGCAACACAATT 59.190 34.615 0.00 0.00 0.00 2.32
5201 7995 7.008901 CACAATCATCATACTGCAACACAATTC 59.991 37.037 0.00 0.00 0.00 2.17
5202 7996 6.762702 ATCATCATACTGCAACACAATTCA 57.237 33.333 0.00 0.00 0.00 2.57
5203 7997 6.572167 TCATCATACTGCAACACAATTCAA 57.428 33.333 0.00 0.00 0.00 2.69
5204 7998 6.979465 TCATCATACTGCAACACAATTCAAA 58.021 32.000 0.00 0.00 0.00 2.69
5205 7999 7.432059 TCATCATACTGCAACACAATTCAAAA 58.568 30.769 0.00 0.00 0.00 2.44
5405 8879 1.404391 CAAGCCTCCATCACAAGCATC 59.596 52.381 0.00 0.00 0.00 3.91
5406 8880 0.917533 AGCCTCCATCACAAGCATCT 59.082 50.000 0.00 0.00 0.00 2.90
5407 8881 1.134159 AGCCTCCATCACAAGCATCTC 60.134 52.381 0.00 0.00 0.00 2.75
5408 8882 1.407851 GCCTCCATCACAAGCATCTCA 60.408 52.381 0.00 0.00 0.00 3.27
5409 8883 2.942752 GCCTCCATCACAAGCATCTCAA 60.943 50.000 0.00 0.00 0.00 3.02
5410 8884 2.943690 CCTCCATCACAAGCATCTCAAG 59.056 50.000 0.00 0.00 0.00 3.02
5411 8885 2.355132 CTCCATCACAAGCATCTCAAGC 59.645 50.000 0.00 0.00 0.00 4.01
5412 8886 1.404391 CCATCACAAGCATCTCAAGCC 59.596 52.381 0.00 0.00 0.00 4.35
5413 8887 2.366533 CATCACAAGCATCTCAAGCCT 58.633 47.619 0.00 0.00 0.00 4.58
5450 8925 0.622136 AGCCTCCATCACAAGCATCA 59.378 50.000 0.00 0.00 0.00 3.07
5457 8993 1.816835 CATCACAAGCATCACAAGCCT 59.183 47.619 0.00 0.00 0.00 4.58
5458 8994 1.527034 TCACAAGCATCACAAGCCTC 58.473 50.000 0.00 0.00 0.00 4.70
5459 8995 0.524862 CACAAGCATCACAAGCCTCC 59.475 55.000 0.00 0.00 0.00 4.30
5460 8996 0.111061 ACAAGCATCACAAGCCTCCA 59.889 50.000 0.00 0.00 0.00 3.86
5461 8997 1.272313 ACAAGCATCACAAGCCTCCAT 60.272 47.619 0.00 0.00 0.00 3.41
5462 8998 1.404391 CAAGCATCACAAGCCTCCATC 59.596 52.381 0.00 0.00 0.00 3.51
5463 8999 0.622136 AGCATCACAAGCCTCCATCA 59.378 50.000 0.00 0.00 0.00 3.07
5464 9000 0.737219 GCATCACAAGCCTCCATCAC 59.263 55.000 0.00 0.00 0.00 3.06
5465 9001 1.951895 GCATCACAAGCCTCCATCACA 60.952 52.381 0.00 0.00 0.00 3.58
5466 9002 2.439409 CATCACAAGCCTCCATCACAA 58.561 47.619 0.00 0.00 0.00 3.33
5467 9003 2.189594 TCACAAGCCTCCATCACAAG 57.810 50.000 0.00 0.00 0.00 3.16
5468 9004 0.524862 CACAAGCCTCCATCACAAGC 59.475 55.000 0.00 0.00 0.00 4.01
5469 9005 0.111061 ACAAGCCTCCATCACAAGCA 59.889 50.000 0.00 0.00 0.00 3.91
5470 9006 1.272313 ACAAGCCTCCATCACAAGCAT 60.272 47.619 0.00 0.00 0.00 3.79
5471 9007 1.404391 CAAGCCTCCATCACAAGCATC 59.596 52.381 0.00 0.00 0.00 3.91
5472 9008 0.917533 AGCCTCCATCACAAGCATCT 59.082 50.000 0.00 0.00 0.00 2.90
5473 9009 1.134159 AGCCTCCATCACAAGCATCTC 60.134 52.381 0.00 0.00 0.00 2.75
5474 9010 1.407851 GCCTCCATCACAAGCATCTCA 60.408 52.381 0.00 0.00 0.00 3.27
5475 9011 2.942752 GCCTCCATCACAAGCATCTCAA 60.943 50.000 0.00 0.00 0.00 3.02
5476 9012 2.943690 CCTCCATCACAAGCATCTCAAG 59.056 50.000 0.00 0.00 0.00 3.02
5477 9013 2.355132 CTCCATCACAAGCATCTCAAGC 59.645 50.000 0.00 0.00 0.00 4.01
5478 9014 1.404391 CCATCACAAGCATCTCAAGCC 59.596 52.381 0.00 0.00 0.00 4.35
5479 9015 2.366533 CATCACAAGCATCTCAAGCCT 58.633 47.619 0.00 0.00 0.00 4.58
5480 9016 2.105006 TCACAAGCATCTCAAGCCTC 57.895 50.000 0.00 0.00 0.00 4.70
5481 9017 1.093159 CACAAGCATCTCAAGCCTCC 58.907 55.000 0.00 0.00 0.00 4.30
5482 9018 0.694771 ACAAGCATCTCAAGCCTCCA 59.305 50.000 0.00 0.00 0.00 3.86
5483 9019 1.284198 ACAAGCATCTCAAGCCTCCAT 59.716 47.619 0.00 0.00 0.00 3.41
5484 9020 1.948145 CAAGCATCTCAAGCCTCCATC 59.052 52.381 0.00 0.00 0.00 3.51
5485 9021 1.210538 AGCATCTCAAGCCTCCATCA 58.789 50.000 0.00 0.00 0.00 3.07
5486 9022 1.134159 AGCATCTCAAGCCTCCATCAC 60.134 52.381 0.00 0.00 0.00 3.06
5487 9023 1.407851 GCATCTCAAGCCTCCATCACA 60.408 52.381 0.00 0.00 0.00 3.58
5488 9024 2.942752 GCATCTCAAGCCTCCATCACAA 60.943 50.000 0.00 0.00 0.00 3.33
5489 9025 2.775911 TCTCAAGCCTCCATCACAAG 57.224 50.000 0.00 0.00 0.00 3.16
5490 9026 1.093159 CTCAAGCCTCCATCACAAGC 58.907 55.000 0.00 0.00 0.00 4.01
5491 9027 0.401356 TCAAGCCTCCATCACAAGCA 59.599 50.000 0.00 0.00 0.00 3.91
5492 9028 1.005097 TCAAGCCTCCATCACAAGCAT 59.995 47.619 0.00 0.00 0.00 3.79
5493 9029 1.404391 CAAGCCTCCATCACAAGCATC 59.596 52.381 0.00 0.00 0.00 3.91
5494 9030 0.106819 AGCCTCCATCACAAGCATCC 60.107 55.000 0.00 0.00 0.00 3.51
5495 9031 0.394762 GCCTCCATCACAAGCATCCA 60.395 55.000 0.00 0.00 0.00 3.41
5496 9032 1.386533 CCTCCATCACAAGCATCCAC 58.613 55.000 0.00 0.00 0.00 4.02
5497 9033 1.386533 CTCCATCACAAGCATCCACC 58.613 55.000 0.00 0.00 0.00 4.61
5498 9034 0.697658 TCCATCACAAGCATCCACCA 59.302 50.000 0.00 0.00 0.00 4.17
5499 9035 0.813184 CCATCACAAGCATCCACCAC 59.187 55.000 0.00 0.00 0.00 4.16
5500 9036 1.536940 CATCACAAGCATCCACCACA 58.463 50.000 0.00 0.00 0.00 4.17
5501 9037 1.887854 CATCACAAGCATCCACCACAA 59.112 47.619 0.00 0.00 0.00 3.33
5502 9038 1.608055 TCACAAGCATCCACCACAAG 58.392 50.000 0.00 0.00 0.00 3.16
5503 9039 0.038892 CACAAGCATCCACCACAAGC 60.039 55.000 0.00 0.00 0.00 4.01
5504 9040 0.467844 ACAAGCATCCACCACAAGCA 60.468 50.000 0.00 0.00 0.00 3.91
5505 9041 0.892755 CAAGCATCCACCACAAGCAT 59.107 50.000 0.00 0.00 0.00 3.79
5506 9042 1.135199 CAAGCATCCACCACAAGCATC 60.135 52.381 0.00 0.00 0.00 3.91
5507 9043 0.330604 AGCATCCACCACAAGCATCT 59.669 50.000 0.00 0.00 0.00 2.90
5508 9044 0.737219 GCATCCACCACAAGCATCTC 59.263 55.000 0.00 0.00 0.00 2.75
5509 9045 1.951895 GCATCCACCACAAGCATCTCA 60.952 52.381 0.00 0.00 0.00 3.27
5510 9046 2.439409 CATCCACCACAAGCATCTCAA 58.561 47.619 0.00 0.00 0.00 3.02
5511 9047 2.189594 TCCACCACAAGCATCTCAAG 57.810 50.000 0.00 0.00 0.00 3.02
5512 9048 0.524862 CCACCACAAGCATCTCAAGC 59.475 55.000 0.00 0.00 0.00 4.01
5513 9049 0.524862 CACCACAAGCATCTCAAGCC 59.475 55.000 0.00 0.00 0.00 4.35
5529 9144 0.917533 AGCCTCCATCACAAGCATCT 59.082 50.000 0.00 0.00 0.00 2.90
7976 11611 6.818644 TCCTATTGTCTGAAATGCTACAGTTC 59.181 38.462 1.09 1.09 38.66 3.01
7977 11612 6.820656 CCTATTGTCTGAAATGCTACAGTTCT 59.179 38.462 8.92 0.00 38.92 3.01
7978 11613 7.335422 CCTATTGTCTGAAATGCTACAGTTCTT 59.665 37.037 8.92 0.00 38.92 2.52
7979 11614 6.942532 TTGTCTGAAATGCTACAGTTCTTT 57.057 33.333 8.92 0.00 38.92 2.52
7980 11615 8.621532 ATTGTCTGAAATGCTACAGTTCTTTA 57.378 30.769 8.92 0.00 38.92 1.85
7981 11616 8.445275 TTGTCTGAAATGCTACAGTTCTTTAA 57.555 30.769 8.92 0.00 38.92 1.52
7982 11617 8.621532 TGTCTGAAATGCTACAGTTCTTTAAT 57.378 30.769 8.92 0.00 38.92 1.40
7983 11618 9.066892 TGTCTGAAATGCTACAGTTCTTTAATT 57.933 29.630 8.92 0.00 38.92 1.40
7999 11634 8.732746 TTCTTTAATTAGAACAGGCTATGTCC 57.267 34.615 0.00 0.00 43.00 4.02
8000 11635 6.984474 TCTTTAATTAGAACAGGCTATGTCCG 59.016 38.462 0.00 0.00 43.00 4.79
8001 11636 6.474140 TTAATTAGAACAGGCTATGTCCGA 57.526 37.500 0.00 0.00 43.00 4.55
8002 11637 3.795623 TTAGAACAGGCTATGTCCGAC 57.204 47.619 0.00 0.00 43.00 4.79
8003 11638 0.456221 AGAACAGGCTATGTCCGACG 59.544 55.000 0.00 0.00 43.00 5.12
8004 11639 0.527817 GAACAGGCTATGTCCGACGG 60.528 60.000 7.84 7.84 43.00 4.79
8005 11640 2.279517 CAGGCTATGTCCGACGGC 60.280 66.667 9.66 5.12 0.00 5.68
8006 11641 2.442272 AGGCTATGTCCGACGGCT 60.442 61.111 9.66 0.00 0.00 5.52
8007 11642 1.152819 AGGCTATGTCCGACGGCTA 60.153 57.895 9.66 0.00 0.00 3.93
8008 11643 1.173444 AGGCTATGTCCGACGGCTAG 61.173 60.000 9.66 10.81 0.00 3.42
8009 11644 1.453762 GGCTATGTCCGACGGCTAGT 61.454 60.000 9.66 0.00 0.00 2.57
8010 11645 0.384669 GCTATGTCCGACGGCTAGTT 59.615 55.000 9.66 0.00 0.00 2.24
8011 11646 1.864435 GCTATGTCCGACGGCTAGTTG 60.864 57.143 9.66 0.00 0.00 3.16
8050 11685 4.880537 CCGCTGGCGCTGGTAGAG 62.881 72.222 7.64 2.89 38.24 2.43
8051 11686 4.880537 CGCTGGCGCTGGTAGAGG 62.881 72.222 7.64 0.00 0.00 3.69
8052 11687 4.537433 GCTGGCGCTGGTAGAGGG 62.537 72.222 7.64 0.00 37.69 4.30
8053 11688 3.854669 CTGGCGCTGGTAGAGGGG 61.855 72.222 7.64 0.00 35.13 4.79
8054 11689 4.392166 TGGCGCTGGTAGAGGGGA 62.392 66.667 7.64 0.00 35.13 4.81
8055 11690 2.844839 GGCGCTGGTAGAGGGGAT 60.845 66.667 7.64 0.00 35.13 3.85
8056 11691 2.423446 GCGCTGGTAGAGGGGATG 59.577 66.667 0.00 0.00 35.13 3.51
8057 11692 2.423446 CGCTGGTAGAGGGGATGC 59.577 66.667 0.00 0.00 0.00 3.91
8058 11693 2.832498 GCTGGTAGAGGGGATGCC 59.168 66.667 0.00 0.00 0.00 4.40
8059 11694 3.142393 CTGGTAGAGGGGATGCCG 58.858 66.667 0.00 0.00 0.00 5.69
8060 11695 3.161450 TGGTAGAGGGGATGCCGC 61.161 66.667 0.00 0.00 36.67 6.53
8062 11697 2.423446 GTAGAGGGGATGCCGCTG 59.577 66.667 7.83 0.00 46.94 5.18
8063 11698 3.550431 TAGAGGGGATGCCGCTGC 61.550 66.667 7.83 0.00 46.94 5.25
8081 11716 3.049674 ACGTGCGTGAATGGCTGG 61.050 61.111 0.00 0.00 0.00 4.85
8082 11717 2.741985 CGTGCGTGAATGGCTGGA 60.742 61.111 0.00 0.00 0.00 3.86
8083 11718 2.743752 CGTGCGTGAATGGCTGGAG 61.744 63.158 0.00 0.00 0.00 3.86
8084 11719 2.046023 TGCGTGAATGGCTGGAGG 60.046 61.111 0.00 0.00 0.00 4.30
8085 11720 3.512516 GCGTGAATGGCTGGAGGC 61.513 66.667 0.00 0.00 41.50 4.70
8189 11824 4.683832 AGTCTTCTCGGTTTATCAATCCG 58.316 43.478 2.68 2.68 44.76 4.18
8221 11856 3.565764 TTATCATCTGCCCCTGAACAG 57.434 47.619 0.00 0.00 35.15 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.603110 CGTCACCTCACGTTATTGATGG 59.397 50.000 0.00 0.00 34.95 3.51
2 3 2.094182 AGCGTCACCTCACGTTATTGAT 60.094 45.455 0.00 0.00 42.04 2.57
3 4 1.271379 AGCGTCACCTCACGTTATTGA 59.729 47.619 0.00 0.00 42.04 2.57
4 5 1.710013 AGCGTCACCTCACGTTATTG 58.290 50.000 0.00 0.00 42.04 1.90
5 6 2.450609 AAGCGTCACCTCACGTTATT 57.549 45.000 0.00 0.00 42.04 1.40
6 7 2.066262 CAAAGCGTCACCTCACGTTAT 58.934 47.619 0.00 0.00 42.04 1.89
7 8 1.067364 TCAAAGCGTCACCTCACGTTA 59.933 47.619 0.00 0.00 42.04 3.18
8 9 0.179094 TCAAAGCGTCACCTCACGTT 60.179 50.000 0.00 0.00 42.04 3.99
9 10 0.033504 ATCAAAGCGTCACCTCACGT 59.966 50.000 0.00 0.00 42.04 4.49
10 11 0.716108 GATCAAAGCGTCACCTCACG 59.284 55.000 0.00 0.00 42.95 4.35
11 12 0.716108 CGATCAAAGCGTCACCTCAC 59.284 55.000 0.00 0.00 0.00 3.51
12 13 0.389817 CCGATCAAAGCGTCACCTCA 60.390 55.000 0.00 0.00 0.00 3.86
13 14 1.084370 CCCGATCAAAGCGTCACCTC 61.084 60.000 0.00 0.00 0.00 3.85
14 15 1.079127 CCCGATCAAAGCGTCACCT 60.079 57.895 0.00 0.00 0.00 4.00
15 16 0.462047 ATCCCGATCAAAGCGTCACC 60.462 55.000 0.00 0.00 0.00 4.02
16 17 1.062587 CAATCCCGATCAAAGCGTCAC 59.937 52.381 0.00 0.00 0.00 3.67
17 18 1.338674 ACAATCCCGATCAAAGCGTCA 60.339 47.619 0.00 0.00 0.00 4.35
18 19 1.327764 GACAATCCCGATCAAAGCGTC 59.672 52.381 0.00 0.00 0.00 5.19
19 20 1.369625 GACAATCCCGATCAAAGCGT 58.630 50.000 0.00 0.00 0.00 5.07
20 21 0.301687 CGACAATCCCGATCAAAGCG 59.698 55.000 0.00 0.00 0.00 4.68
21 22 1.369625 ACGACAATCCCGATCAAAGC 58.630 50.000 0.00 0.00 0.00 3.51
22 23 3.123804 CCTACGACAATCCCGATCAAAG 58.876 50.000 0.00 0.00 0.00 2.77
23 24 2.761767 TCCTACGACAATCCCGATCAAA 59.238 45.455 0.00 0.00 0.00 2.69
24 25 2.380941 TCCTACGACAATCCCGATCAA 58.619 47.619 0.00 0.00 0.00 2.57
25 26 2.061509 TCCTACGACAATCCCGATCA 57.938 50.000 0.00 0.00 0.00 2.92
26 27 3.243771 ACATTCCTACGACAATCCCGATC 60.244 47.826 0.00 0.00 0.00 3.69
27 28 2.698797 ACATTCCTACGACAATCCCGAT 59.301 45.455 0.00 0.00 0.00 4.18
28 29 2.104967 ACATTCCTACGACAATCCCGA 58.895 47.619 0.00 0.00 0.00 5.14
29 30 2.201732 CACATTCCTACGACAATCCCG 58.798 52.381 0.00 0.00 0.00 5.14
30 31 1.940613 GCACATTCCTACGACAATCCC 59.059 52.381 0.00 0.00 0.00 3.85
31 32 2.906354 AGCACATTCCTACGACAATCC 58.094 47.619 0.00 0.00 0.00 3.01
32 33 3.932710 TCAAGCACATTCCTACGACAATC 59.067 43.478 0.00 0.00 0.00 2.67
33 34 3.937814 TCAAGCACATTCCTACGACAAT 58.062 40.909 0.00 0.00 0.00 2.71
34 35 3.394674 TCAAGCACATTCCTACGACAA 57.605 42.857 0.00 0.00 0.00 3.18
35 36 3.610040 ATCAAGCACATTCCTACGACA 57.390 42.857 0.00 0.00 0.00 4.35
36 37 3.063997 CCAATCAAGCACATTCCTACGAC 59.936 47.826 0.00 0.00 0.00 4.34
37 38 3.270027 CCAATCAAGCACATTCCTACGA 58.730 45.455 0.00 0.00 0.00 3.43
38 39 2.223340 GCCAATCAAGCACATTCCTACG 60.223 50.000 0.00 0.00 0.00 3.51
39 40 2.099756 GGCCAATCAAGCACATTCCTAC 59.900 50.000 0.00 0.00 0.00 3.18
40 41 2.025037 AGGCCAATCAAGCACATTCCTA 60.025 45.455 5.01 0.00 0.00 2.94
41 42 1.188863 GGCCAATCAAGCACATTCCT 58.811 50.000 0.00 0.00 0.00 3.36
42 43 1.188863 AGGCCAATCAAGCACATTCC 58.811 50.000 5.01 0.00 0.00 3.01
43 44 2.417787 GGAAGGCCAATCAAGCACATTC 60.418 50.000 5.01 0.00 0.00 2.67
44 45 1.551883 GGAAGGCCAATCAAGCACATT 59.448 47.619 5.01 0.00 0.00 2.71
45 46 1.188863 GGAAGGCCAATCAAGCACAT 58.811 50.000 5.01 0.00 0.00 3.21
46 47 0.178967 TGGAAGGCCAATCAAGCACA 60.179 50.000 5.01 0.00 42.49 4.57
47 48 2.657297 TGGAAGGCCAATCAAGCAC 58.343 52.632 5.01 0.00 42.49 4.40
57 58 1.217244 CAAGCAGCAATGGAAGGCC 59.783 57.895 0.00 0.00 0.00 5.19
58 59 1.447314 GCAAGCAGCAATGGAAGGC 60.447 57.895 0.00 0.00 44.79 4.35
59 60 4.904466 GCAAGCAGCAATGGAAGG 57.096 55.556 0.00 0.00 44.79 3.46
68 69 0.524180 GCCGAAACTATGCAAGCAGC 60.524 55.000 0.00 0.00 45.96 5.25
69 70 0.804364 TGCCGAAACTATGCAAGCAG 59.196 50.000 0.00 0.00 30.85 4.24
70 71 0.804364 CTGCCGAAACTATGCAAGCA 59.196 50.000 0.00 0.00 34.06 3.91
71 72 1.086696 TCTGCCGAAACTATGCAAGC 58.913 50.000 0.00 0.00 34.06 4.01
72 73 2.474526 CGTTCTGCCGAAACTATGCAAG 60.475 50.000 0.00 0.00 34.06 4.01
73 74 1.463056 CGTTCTGCCGAAACTATGCAA 59.537 47.619 0.00 0.00 34.06 4.08
74 75 1.075542 CGTTCTGCCGAAACTATGCA 58.924 50.000 0.00 0.00 0.00 3.96
75 76 1.355971 TCGTTCTGCCGAAACTATGC 58.644 50.000 0.00 0.00 33.15 3.14
82 83 1.671850 GGAGATGTTCGTTCTGCCGAA 60.672 52.381 0.00 0.00 43.96 4.30
83 84 0.108804 GGAGATGTTCGTTCTGCCGA 60.109 55.000 0.00 0.00 34.52 5.54
84 85 0.389817 TGGAGATGTTCGTTCTGCCG 60.390 55.000 0.00 0.00 31.17 5.69
85 86 1.079503 GTGGAGATGTTCGTTCTGCC 58.920 55.000 0.00 0.00 31.17 4.85
86 87 1.079503 GGTGGAGATGTTCGTTCTGC 58.920 55.000 0.00 0.00 32.69 4.26
87 88 2.751166 AGGTGGAGATGTTCGTTCTG 57.249 50.000 0.00 0.00 0.00 3.02
88 89 3.771577 AAAGGTGGAGATGTTCGTTCT 57.228 42.857 0.00 0.00 0.00 3.01
89 90 5.237779 TGTTTAAAGGTGGAGATGTTCGTTC 59.762 40.000 0.00 0.00 0.00 3.95
90 91 5.008316 GTGTTTAAAGGTGGAGATGTTCGTT 59.992 40.000 0.00 0.00 0.00 3.85
91 92 4.514066 GTGTTTAAAGGTGGAGATGTTCGT 59.486 41.667 0.00 0.00 0.00 3.85
92 93 4.755123 AGTGTTTAAAGGTGGAGATGTTCG 59.245 41.667 0.00 0.00 0.00 3.95
93 94 7.201530 CGATAGTGTTTAAAGGTGGAGATGTTC 60.202 40.741 0.00 0.00 0.00 3.18
94 95 6.594159 CGATAGTGTTTAAAGGTGGAGATGTT 59.406 38.462 0.00 0.00 0.00 2.71
95 96 6.106673 CGATAGTGTTTAAAGGTGGAGATGT 58.893 40.000 0.00 0.00 0.00 3.06
96 97 6.589830 CGATAGTGTTTAAAGGTGGAGATG 57.410 41.667 0.00 0.00 0.00 2.90
114 115 4.084013 GGTTGTTGTCTTGGTTGACGATAG 60.084 45.833 0.00 0.00 39.64 2.08
115 116 3.810941 GGTTGTTGTCTTGGTTGACGATA 59.189 43.478 0.00 0.00 39.64 2.92
116 117 2.616842 GGTTGTTGTCTTGGTTGACGAT 59.383 45.455 0.00 0.00 39.64 3.73
117 118 2.011222 GGTTGTTGTCTTGGTTGACGA 58.989 47.619 0.00 0.00 39.64 4.20
118 119 1.267832 CGGTTGTTGTCTTGGTTGACG 60.268 52.381 0.00 0.00 39.64 4.35
119 120 1.741145 ACGGTTGTTGTCTTGGTTGAC 59.259 47.619 0.00 0.00 37.47 3.18
120 121 2.011222 GACGGTTGTTGTCTTGGTTGA 58.989 47.619 0.00 0.00 33.54 3.18
121 122 1.267832 CGACGGTTGTTGTCTTGGTTG 60.268 52.381 0.00 0.00 34.17 3.77
122 123 1.011333 CGACGGTTGTTGTCTTGGTT 58.989 50.000 0.00 0.00 34.17 3.67
123 124 0.176219 TCGACGGTTGTTGTCTTGGT 59.824 50.000 0.00 0.00 34.17 3.67
124 125 0.580104 GTCGACGGTTGTTGTCTTGG 59.420 55.000 0.00 0.00 34.17 3.61
125 126 1.282817 TGTCGACGGTTGTTGTCTTG 58.717 50.000 11.62 0.00 34.17 3.02
126 127 2.012937 TTGTCGACGGTTGTTGTCTT 57.987 45.000 11.62 0.00 34.17 3.01
127 128 2.234300 ATTGTCGACGGTTGTTGTCT 57.766 45.000 11.62 0.00 34.17 3.41
128 129 2.156310 GGTATTGTCGACGGTTGTTGTC 59.844 50.000 11.62 0.00 0.00 3.18
129 130 2.137523 GGTATTGTCGACGGTTGTTGT 58.862 47.619 11.62 0.00 0.00 3.32
130 131 2.409975 AGGTATTGTCGACGGTTGTTG 58.590 47.619 11.62 0.00 0.00 3.33
131 132 2.825861 AGGTATTGTCGACGGTTGTT 57.174 45.000 11.62 0.00 0.00 2.83
132 133 3.488047 CGATAGGTATTGTCGACGGTTGT 60.488 47.826 11.62 0.00 42.31 3.32
133 134 3.040795 CGATAGGTATTGTCGACGGTTG 58.959 50.000 11.62 0.00 42.31 3.77
134 135 2.684881 ACGATAGGTATTGTCGACGGTT 59.315 45.455 11.62 0.32 42.31 4.44
135 136 2.289002 GACGATAGGTATTGTCGACGGT 59.711 50.000 11.62 4.34 42.31 4.83
136 137 2.288729 TGACGATAGGTATTGTCGACGG 59.711 50.000 11.62 0.00 45.80 4.79
137 138 3.597377 TGACGATAGGTATTGTCGACG 57.403 47.619 11.62 0.00 45.80 5.12
139 140 3.695556 TGGTTGACGATAGGTATTGTCGA 59.304 43.478 11.24 7.72 45.80 4.20
140 141 4.036567 TGGTTGACGATAGGTATTGTCG 57.963 45.455 11.24 0.00 45.80 4.35
141 142 5.519206 GTCTTGGTTGACGATAGGTATTGTC 59.481 44.000 9.62 9.62 44.02 3.18
142 143 5.046878 TGTCTTGGTTGACGATAGGTATTGT 60.047 40.000 0.00 0.00 39.64 2.71
143 144 5.416083 TGTCTTGGTTGACGATAGGTATTG 58.584 41.667 0.00 0.00 39.64 1.90
144 145 5.670792 TGTCTTGGTTGACGATAGGTATT 57.329 39.130 0.00 0.00 39.64 1.89
145 146 5.046878 TGTTGTCTTGGTTGACGATAGGTAT 60.047 40.000 0.00 0.00 39.64 2.73
146 147 4.281435 TGTTGTCTTGGTTGACGATAGGTA 59.719 41.667 0.00 0.00 39.64 3.08
147 148 3.070446 TGTTGTCTTGGTTGACGATAGGT 59.930 43.478 0.00 0.00 39.64 3.08
148 149 3.659786 TGTTGTCTTGGTTGACGATAGG 58.340 45.455 0.00 0.00 39.64 2.57
149 150 4.084013 GGTTGTTGTCTTGGTTGACGATAG 60.084 45.833 0.00 0.00 39.64 2.08
150 151 3.810941 GGTTGTTGTCTTGGTTGACGATA 59.189 43.478 0.00 0.00 39.64 2.92
151 152 2.616842 GGTTGTTGTCTTGGTTGACGAT 59.383 45.455 0.00 0.00 39.64 3.73
283 285 1.141881 CGCTAGACCCATCGCAGTT 59.858 57.895 0.00 0.00 0.00 3.16
290 292 2.911143 CCTTGGCGCTAGACCCAT 59.089 61.111 7.64 0.00 0.00 4.00
319 321 2.026014 GCGGCGGCATTACAATGG 59.974 61.111 9.78 0.00 39.62 3.16
320 322 2.026014 GGCGGCGGCATTACAATG 59.974 61.111 29.41 0.00 42.47 2.82
346 348 2.203280 CTCCCACCGGTTGCAACA 60.203 61.111 29.55 7.59 0.00 3.33
482 487 0.395862 TTGAAAAACCGTCAGGGCCA 60.396 50.000 6.18 0.00 43.47 5.36
490 495 4.215613 GGTCTTATGAGCTTGAAAAACCGT 59.784 41.667 0.00 0.00 37.68 4.83
514 519 6.374578 GTTTTCTCTACTCCAATTGCAGAAC 58.625 40.000 2.64 0.00 0.00 3.01
804 1781 2.029666 GGACCATCGGCTCATCGG 59.970 66.667 0.00 0.00 0.00 4.18
818 1795 0.318120 TTCAGGTTTACCGGTCGGAC 59.682 55.000 12.40 8.50 42.08 4.79
819 1796 0.318120 GTTCAGGTTTACCGGTCGGA 59.682 55.000 12.40 0.00 42.08 4.55
927 1921 2.645192 CCCATGGCAAAACGGGTCC 61.645 63.158 6.09 0.00 33.67 4.46
942 1966 0.861155 TTTGGTTAAAGAGGCCCCCA 59.139 50.000 0.00 0.00 0.00 4.96
951 1975 6.183360 ACAAATCCTGGTCTGTTTGGTTAAAG 60.183 38.462 15.34 0.00 36.23 1.85
1022 2064 8.601845 TTCTCTAGTCTATCTCAAATCTCTCG 57.398 38.462 0.00 0.00 0.00 4.04
1189 2239 4.148825 GGATGGCCGCACGAGACT 62.149 66.667 0.00 0.00 0.00 3.24
1208 2258 0.246360 TTGAGGAAATGCGCGAGAGA 59.754 50.000 12.10 0.00 0.00 3.10
1657 2707 0.886490 CAAAGGACTGCTTGACGGCT 60.886 55.000 0.00 0.00 0.00 5.52
1897 2947 2.262915 CAGGTCACCGGACTCAGC 59.737 66.667 9.46 0.00 43.77 4.26
2133 3183 1.340991 ACACCAATATGTCCAGCACCC 60.341 52.381 0.00 0.00 0.00 4.61
2415 3465 2.202690 CAGGTGCATTGCATGGCG 60.203 61.111 15.49 0.42 41.91 5.69
2446 3496 9.338622 AGGCATAACAAACAGGATATAAGTTAC 57.661 33.333 0.00 0.00 0.00 2.50
2516 3570 2.674177 CGGTAAGTTTCATCCGTCAGCT 60.674 50.000 0.00 0.00 38.45 4.24
2522 3576 3.000925 CGATTTCCGGTAAGTTTCATCCG 59.999 47.826 0.00 0.00 42.22 4.18
2533 3587 1.342174 GCATCCCTACGATTTCCGGTA 59.658 52.381 0.00 0.00 43.93 4.02
2534 3588 0.106149 GCATCCCTACGATTTCCGGT 59.894 55.000 0.00 0.00 43.93 5.28
2577 3631 8.497745 AGATCAGGTGAAATATTTACACTGGAT 58.502 33.333 20.37 20.49 35.28 3.41
2597 3651 8.627208 AAGCCCACATATTATGTTAAGATCAG 57.373 34.615 6.58 0.00 42.70 2.90
2616 3670 4.966787 GGCAACCCACGAAGCCCA 62.967 66.667 0.00 0.00 41.25 5.36
2675 3731 4.156190 TGAGAGTTCAGTAGCTTTAGGTCG 59.844 45.833 0.00 0.00 0.00 4.79
2729 3790 3.498018 GGTCCAAAATTCAAACATGCCAC 59.502 43.478 0.00 0.00 0.00 5.01
2743 3804 8.477419 AACTTTCTAGAATTCATGGTCCAAAA 57.523 30.769 5.89 0.00 0.00 2.44
2748 3809 7.106239 TCCTGAACTTTCTAGAATTCATGGTC 58.894 38.462 17.66 9.99 31.00 4.02
2777 3838 3.181483 GCTGCATTGCATAAGCCTACTTT 60.181 43.478 12.53 0.00 38.13 2.66
2778 3839 2.360165 GCTGCATTGCATAAGCCTACTT 59.640 45.455 12.53 0.00 38.13 2.24
2781 3842 2.055684 TGCTGCATTGCATAAGCCTA 57.944 45.000 12.53 0.00 38.13 3.93
2818 3885 7.138081 TGTGTTTTTATCATGTGCTTGTACAG 58.862 34.615 0.00 0.00 33.44 2.74
2860 3950 0.787787 GTGCAACATCGTAAGCGTGA 59.212 50.000 0.00 0.00 36.62 4.35
2869 3959 0.592637 TTCCTTGCAGTGCAACATCG 59.407 50.000 26.36 16.15 43.99 3.84
2870 3960 1.336240 GGTTCCTTGCAGTGCAACATC 60.336 52.381 26.36 15.57 43.99 3.06
2876 3966 1.168714 CCTTAGGTTCCTTGCAGTGC 58.831 55.000 8.58 8.58 0.00 4.40
2898 3988 2.881734 AGATGGAGATCATAGTGCCGA 58.118 47.619 0.00 0.00 35.97 5.54
2997 4089 2.576191 ACCAATGCTACCACCTATGTGT 59.424 45.455 0.00 0.00 41.09 3.72
3043 4135 8.030913 ACGGAACAAAGGGAGTAGATTATAAT 57.969 34.615 0.00 0.00 0.00 1.28
3060 4152 7.219917 CGTTTAACGACCTATATTACGGAACAA 59.780 37.037 12.53 0.00 46.05 2.83
4822 6615 7.559897 TGAAAAGGTTTGGTTAACAGAGAAGAT 59.440 33.333 8.10 0.00 38.55 2.40
5171 7965 5.881443 TGTTGCAGTATGATGATTGTGATCA 59.119 36.000 0.00 0.00 41.02 2.92
5172 7966 6.183360 TGTGTTGCAGTATGATGATTGTGATC 60.183 38.462 0.00 0.00 39.69 2.92
5173 7967 5.648960 TGTGTTGCAGTATGATGATTGTGAT 59.351 36.000 0.00 0.00 39.69 3.06
5174 7968 5.002516 TGTGTTGCAGTATGATGATTGTGA 58.997 37.500 0.00 0.00 39.69 3.58
5175 7969 5.299582 TGTGTTGCAGTATGATGATTGTG 57.700 39.130 0.00 0.00 39.69 3.33
5176 7970 5.963176 TTGTGTTGCAGTATGATGATTGT 57.037 34.783 0.00 0.00 39.69 2.71
5177 7971 7.030768 TGAATTGTGTTGCAGTATGATGATTG 58.969 34.615 0.00 0.00 39.69 2.67
5178 7972 7.160547 TGAATTGTGTTGCAGTATGATGATT 57.839 32.000 0.00 0.00 39.69 2.57
5179 7973 6.762702 TGAATTGTGTTGCAGTATGATGAT 57.237 33.333 0.00 0.00 39.69 2.45
5180 7974 6.572167 TTGAATTGTGTTGCAGTATGATGA 57.428 33.333 0.00 0.00 39.69 2.92
5181 7975 7.640616 TTTTGAATTGTGTTGCAGTATGATG 57.359 32.000 0.00 0.00 39.69 3.07
5182 7976 7.710044 TGTTTTTGAATTGTGTTGCAGTATGAT 59.290 29.630 0.00 0.00 39.69 2.45
5183 7977 7.038048 TGTTTTTGAATTGTGTTGCAGTATGA 58.962 30.769 0.00 0.00 39.69 2.15
5184 7978 7.231705 TGTTTTTGAATTGTGTTGCAGTATG 57.768 32.000 0.00 0.00 40.87 2.39
5185 7979 7.332926 TGTTGTTTTTGAATTGTGTTGCAGTAT 59.667 29.630 0.00 0.00 0.00 2.12
5186 7980 6.646653 TGTTGTTTTTGAATTGTGTTGCAGTA 59.353 30.769 0.00 0.00 0.00 2.74
5187 7981 5.468072 TGTTGTTTTTGAATTGTGTTGCAGT 59.532 32.000 0.00 0.00 0.00 4.40
5188 7982 5.924786 TGTTGTTTTTGAATTGTGTTGCAG 58.075 33.333 0.00 0.00 0.00 4.41
5189 7983 5.929697 TGTTGTTTTTGAATTGTGTTGCA 57.070 30.435 0.00 0.00 0.00 4.08
5190 7984 5.794448 CCTTGTTGTTTTTGAATTGTGTTGC 59.206 36.000 0.00 0.00 0.00 4.17
5191 7985 7.095271 ACTCCTTGTTGTTTTTGAATTGTGTTG 60.095 33.333 0.00 0.00 0.00 3.33
5192 7986 6.934083 ACTCCTTGTTGTTTTTGAATTGTGTT 59.066 30.769 0.00 0.00 0.00 3.32
5193 7987 6.463360 ACTCCTTGTTGTTTTTGAATTGTGT 58.537 32.000 0.00 0.00 0.00 3.72
5194 7988 6.966435 ACTCCTTGTTGTTTTTGAATTGTG 57.034 33.333 0.00 0.00 0.00 3.33
5195 7989 8.091449 TGTAACTCCTTGTTGTTTTTGAATTGT 58.909 29.630 0.00 0.00 39.55 2.71
5196 7990 8.472683 TGTAACTCCTTGTTGTTTTTGAATTG 57.527 30.769 0.00 0.00 39.55 2.32
5197 7991 9.495572 TTTGTAACTCCTTGTTGTTTTTGAATT 57.504 25.926 0.00 0.00 39.55 2.17
5198 7992 9.665719 ATTTGTAACTCCTTGTTGTTTTTGAAT 57.334 25.926 0.00 0.00 39.55 2.57
5204 7998 9.744468 GTGATTATTTGTAACTCCTTGTTGTTT 57.256 29.630 0.00 0.00 39.55 2.83
5205 7999 8.908903 TGTGATTATTTGTAACTCCTTGTTGTT 58.091 29.630 0.00 0.00 39.55 2.83
5405 8879 1.093159 GCTTGTGATGGAGGCTTGAG 58.907 55.000 0.00 0.00 0.00 3.02
5406 8880 0.401356 TGCTTGTGATGGAGGCTTGA 59.599 50.000 0.00 0.00 0.00 3.02
5407 8881 1.404391 GATGCTTGTGATGGAGGCTTG 59.596 52.381 0.00 0.00 0.00 4.01
5408 8882 1.284198 AGATGCTTGTGATGGAGGCTT 59.716 47.619 0.00 0.00 0.00 4.35
5409 8883 0.917533 AGATGCTTGTGATGGAGGCT 59.082 50.000 0.00 0.00 0.00 4.58
5410 8884 1.307097 GAGATGCTTGTGATGGAGGC 58.693 55.000 0.00 0.00 0.00 4.70
5411 8885 2.704464 TGAGATGCTTGTGATGGAGG 57.296 50.000 0.00 0.00 0.00 4.30
5412 8886 2.355132 GCTTGAGATGCTTGTGATGGAG 59.645 50.000 0.00 0.00 0.00 3.86
5413 8887 2.362736 GCTTGAGATGCTTGTGATGGA 58.637 47.619 0.00 0.00 0.00 3.41
5450 8925 0.111061 TGCTTGTGATGGAGGCTTGT 59.889 50.000 0.00 0.00 0.00 3.16
5457 8993 2.362736 GCTTGAGATGCTTGTGATGGA 58.637 47.619 0.00 0.00 0.00 3.41
5458 8994 1.404391 GGCTTGAGATGCTTGTGATGG 59.596 52.381 0.00 0.00 0.00 3.51
5459 8995 2.355132 GAGGCTTGAGATGCTTGTGATG 59.645 50.000 0.00 0.00 0.00 3.07
5460 8996 2.641305 GAGGCTTGAGATGCTTGTGAT 58.359 47.619 0.00 0.00 0.00 3.06
5461 8997 1.339438 GGAGGCTTGAGATGCTTGTGA 60.339 52.381 0.00 0.00 0.00 3.58
5462 8998 1.093159 GGAGGCTTGAGATGCTTGTG 58.907 55.000 0.00 0.00 0.00 3.33
5463 8999 0.694771 TGGAGGCTTGAGATGCTTGT 59.305 50.000 0.00 0.00 0.00 3.16
5464 9000 1.948145 GATGGAGGCTTGAGATGCTTG 59.052 52.381 0.00 0.00 0.00 4.01
5465 9001 1.562942 TGATGGAGGCTTGAGATGCTT 59.437 47.619 0.00 0.00 0.00 3.91
5466 9002 1.134159 GTGATGGAGGCTTGAGATGCT 60.134 52.381 0.00 0.00 0.00 3.79
5467 9003 1.307097 GTGATGGAGGCTTGAGATGC 58.693 55.000 0.00 0.00 0.00 3.91
5468 9004 2.704464 TGTGATGGAGGCTTGAGATG 57.296 50.000 0.00 0.00 0.00 2.90
5469 9005 2.683152 GCTTGTGATGGAGGCTTGAGAT 60.683 50.000 0.00 0.00 0.00 2.75
5470 9006 1.339438 GCTTGTGATGGAGGCTTGAGA 60.339 52.381 0.00 0.00 0.00 3.27
5471 9007 1.093159 GCTTGTGATGGAGGCTTGAG 58.907 55.000 0.00 0.00 0.00 3.02
5472 9008 0.401356 TGCTTGTGATGGAGGCTTGA 59.599 50.000 0.00 0.00 0.00 3.02
5473 9009 1.404391 GATGCTTGTGATGGAGGCTTG 59.596 52.381 0.00 0.00 0.00 4.01
5474 9010 1.684248 GGATGCTTGTGATGGAGGCTT 60.684 52.381 0.00 0.00 0.00 4.35
5475 9011 0.106819 GGATGCTTGTGATGGAGGCT 60.107 55.000 0.00 0.00 0.00 4.58
5476 9012 0.394762 TGGATGCTTGTGATGGAGGC 60.395 55.000 0.00 0.00 0.00 4.70
5477 9013 1.386533 GTGGATGCTTGTGATGGAGG 58.613 55.000 0.00 0.00 0.00 4.30
5478 9014 1.340308 TGGTGGATGCTTGTGATGGAG 60.340 52.381 0.00 0.00 0.00 3.86
5479 9015 0.697658 TGGTGGATGCTTGTGATGGA 59.302 50.000 0.00 0.00 0.00 3.41
5480 9016 0.813184 GTGGTGGATGCTTGTGATGG 59.187 55.000 0.00 0.00 0.00 3.51
5481 9017 1.536940 TGTGGTGGATGCTTGTGATG 58.463 50.000 0.00 0.00 0.00 3.07
5482 9018 2.165167 CTTGTGGTGGATGCTTGTGAT 58.835 47.619 0.00 0.00 0.00 3.06
5483 9019 1.608055 CTTGTGGTGGATGCTTGTGA 58.392 50.000 0.00 0.00 0.00 3.58
5484 9020 0.038892 GCTTGTGGTGGATGCTTGTG 60.039 55.000 0.00 0.00 0.00 3.33
5485 9021 0.467844 TGCTTGTGGTGGATGCTTGT 60.468 50.000 0.00 0.00 0.00 3.16
5486 9022 0.892755 ATGCTTGTGGTGGATGCTTG 59.107 50.000 0.00 0.00 0.00 4.01
5487 9023 1.180029 GATGCTTGTGGTGGATGCTT 58.820 50.000 0.00 0.00 0.00 3.91
5488 9024 0.330604 AGATGCTTGTGGTGGATGCT 59.669 50.000 0.00 0.00 0.00 3.79
5489 9025 0.737219 GAGATGCTTGTGGTGGATGC 59.263 55.000 0.00 0.00 0.00 3.91
5490 9026 2.118313 TGAGATGCTTGTGGTGGATG 57.882 50.000 0.00 0.00 0.00 3.51
5491 9027 2.719739 CTTGAGATGCTTGTGGTGGAT 58.280 47.619 0.00 0.00 0.00 3.41
5492 9028 1.883638 GCTTGAGATGCTTGTGGTGGA 60.884 52.381 0.00 0.00 0.00 4.02
5493 9029 0.524862 GCTTGAGATGCTTGTGGTGG 59.475 55.000 0.00 0.00 0.00 4.61
5494 9030 0.524862 GGCTTGAGATGCTTGTGGTG 59.475 55.000 0.00 0.00 0.00 4.17
5495 9031 0.403271 AGGCTTGAGATGCTTGTGGT 59.597 50.000 0.00 0.00 0.00 4.16
5496 9032 1.093159 GAGGCTTGAGATGCTTGTGG 58.907 55.000 0.00 0.00 0.00 4.17
5497 9033 1.093159 GGAGGCTTGAGATGCTTGTG 58.907 55.000 0.00 0.00 0.00 3.33
5498 9034 0.694771 TGGAGGCTTGAGATGCTTGT 59.305 50.000 0.00 0.00 0.00 3.16
5499 9035 1.948145 GATGGAGGCTTGAGATGCTTG 59.052 52.381 0.00 0.00 0.00 4.01
5500 9036 1.562942 TGATGGAGGCTTGAGATGCTT 59.437 47.619 0.00 0.00 0.00 3.91
5501 9037 1.134159 GTGATGGAGGCTTGAGATGCT 60.134 52.381 0.00 0.00 0.00 3.79
5502 9038 1.307097 GTGATGGAGGCTTGAGATGC 58.693 55.000 0.00 0.00 0.00 3.91
5503 9039 2.704464 TGTGATGGAGGCTTGAGATG 57.296 50.000 0.00 0.00 0.00 2.90
5504 9040 2.683152 GCTTGTGATGGAGGCTTGAGAT 60.683 50.000 0.00 0.00 0.00 2.75
5505 9041 1.339438 GCTTGTGATGGAGGCTTGAGA 60.339 52.381 0.00 0.00 0.00 3.27
5506 9042 1.093159 GCTTGTGATGGAGGCTTGAG 58.907 55.000 0.00 0.00 0.00 3.02
5507 9043 0.401356 TGCTTGTGATGGAGGCTTGA 59.599 50.000 0.00 0.00 0.00 3.02
5508 9044 1.404391 GATGCTTGTGATGGAGGCTTG 59.596 52.381 0.00 0.00 0.00 4.01
5509 9045 1.284198 AGATGCTTGTGATGGAGGCTT 59.716 47.619 0.00 0.00 0.00 4.35
5510 9046 0.917533 AGATGCTTGTGATGGAGGCT 59.082 50.000 0.00 0.00 0.00 4.58
5511 9047 1.307097 GAGATGCTTGTGATGGAGGC 58.693 55.000 0.00 0.00 0.00 4.70
5512 9048 2.704464 TGAGATGCTTGTGATGGAGG 57.296 50.000 0.00 0.00 0.00 4.30
5513 9049 2.355132 GCTTGAGATGCTTGTGATGGAG 59.645 50.000 0.00 0.00 0.00 3.86
5529 9144 2.203470 TGCTTGTGATGGATGCTTGA 57.797 45.000 0.00 0.00 0.00 3.02
7976 11611 6.984474 TCGGACATAGCCTGTTCTAATTAAAG 59.016 38.462 0.00 0.00 38.54 1.85
7977 11612 6.759827 GTCGGACATAGCCTGTTCTAATTAAA 59.240 38.462 2.62 0.00 38.54 1.52
7978 11613 6.278363 GTCGGACATAGCCTGTTCTAATTAA 58.722 40.000 2.62 0.00 38.54 1.40
7979 11614 5.506815 CGTCGGACATAGCCTGTTCTAATTA 60.507 44.000 9.10 0.00 38.54 1.40
7980 11615 4.694339 GTCGGACATAGCCTGTTCTAATT 58.306 43.478 2.62 0.00 38.54 1.40
7981 11616 3.243434 CGTCGGACATAGCCTGTTCTAAT 60.243 47.826 9.10 0.00 38.54 1.73
7982 11617 2.098607 CGTCGGACATAGCCTGTTCTAA 59.901 50.000 9.10 0.00 38.54 2.10
7983 11618 1.674441 CGTCGGACATAGCCTGTTCTA 59.326 52.381 9.10 0.00 38.54 2.10
7984 11619 0.456221 CGTCGGACATAGCCTGTTCT 59.544 55.000 9.10 0.00 38.54 3.01
7985 11620 0.527817 CCGTCGGACATAGCCTGTTC 60.528 60.000 4.91 0.00 38.54 3.18
7986 11621 1.515954 CCGTCGGACATAGCCTGTT 59.484 57.895 4.91 0.00 38.54 3.16
7987 11622 3.077519 GCCGTCGGACATAGCCTGT 62.078 63.158 17.49 0.00 42.15 4.00
7988 11623 1.452953 TAGCCGTCGGACATAGCCTG 61.453 60.000 17.49 0.00 0.00 4.85
7989 11624 1.152819 TAGCCGTCGGACATAGCCT 60.153 57.895 17.49 2.77 0.00 4.58
7990 11625 1.286260 CTAGCCGTCGGACATAGCC 59.714 63.158 17.49 0.00 0.00 3.93
7991 11626 0.384669 AACTAGCCGTCGGACATAGC 59.615 55.000 17.49 7.73 0.00 2.97
7992 11627 1.269102 CCAACTAGCCGTCGGACATAG 60.269 57.143 17.49 15.17 0.00 2.23
7993 11628 0.742505 CCAACTAGCCGTCGGACATA 59.257 55.000 17.49 3.25 0.00 2.29
7994 11629 1.515954 CCAACTAGCCGTCGGACAT 59.484 57.895 17.49 2.04 0.00 3.06
7995 11630 2.967397 CCAACTAGCCGTCGGACA 59.033 61.111 17.49 0.00 0.00 4.02
7996 11631 2.508663 GCCAACTAGCCGTCGGAC 60.509 66.667 17.49 6.52 0.00 4.79
7997 11632 4.124351 CGCCAACTAGCCGTCGGA 62.124 66.667 17.49 0.00 0.00 4.55
8035 11670 4.537433 CCCTCTACCAGCGCCAGC 62.537 72.222 2.29 0.00 45.58 4.85
8036 11671 3.854669 CCCCTCTACCAGCGCCAG 61.855 72.222 2.29 0.00 0.00 4.85
8037 11672 3.696518 ATCCCCTCTACCAGCGCCA 62.697 63.158 2.29 0.00 0.00 5.69
8038 11673 2.844839 ATCCCCTCTACCAGCGCC 60.845 66.667 2.29 0.00 0.00 6.53
8039 11674 2.423446 CATCCCCTCTACCAGCGC 59.577 66.667 0.00 0.00 0.00 5.92
8040 11675 2.423446 GCATCCCCTCTACCAGCG 59.577 66.667 0.00 0.00 0.00 5.18
8041 11676 2.832498 GGCATCCCCTCTACCAGC 59.168 66.667 0.00 0.00 0.00 4.85
8042 11677 3.142393 CGGCATCCCCTCTACCAG 58.858 66.667 0.00 0.00 0.00 4.00
8043 11678 3.161450 GCGGCATCCCCTCTACCA 61.161 66.667 0.00 0.00 0.00 3.25
8044 11679 2.844839 AGCGGCATCCCCTCTACC 60.845 66.667 1.45 0.00 0.00 3.18
8045 11680 2.423446 CAGCGGCATCCCCTCTAC 59.577 66.667 1.45 0.00 0.00 2.59
8046 11681 3.550431 GCAGCGGCATCCCCTCTA 61.550 66.667 3.18 0.00 40.72 2.43
8059 11694 2.500369 CATTCACGCACGTGCAGC 60.500 61.111 37.03 13.90 45.04 5.25
8060 11695 2.174107 CCATTCACGCACGTGCAG 59.826 61.111 37.03 29.88 45.04 4.41
8061 11696 4.024143 GCCATTCACGCACGTGCA 62.024 61.111 37.03 20.47 45.04 4.57
8062 11697 3.726517 AGCCATTCACGCACGTGC 61.727 61.111 30.42 30.42 45.04 5.34
8063 11698 2.174107 CAGCCATTCACGCACGTG 59.826 61.111 16.73 16.73 46.64 4.49
8064 11699 3.049674 CCAGCCATTCACGCACGT 61.050 61.111 0.00 0.00 0.00 4.49
8065 11700 2.741985 TCCAGCCATTCACGCACG 60.742 61.111 0.00 0.00 0.00 5.34
8066 11701 2.401766 CCTCCAGCCATTCACGCAC 61.402 63.158 0.00 0.00 0.00 5.34
8067 11702 2.046023 CCTCCAGCCATTCACGCA 60.046 61.111 0.00 0.00 0.00 5.24
8068 11703 3.512516 GCCTCCAGCCATTCACGC 61.513 66.667 0.00 0.00 34.35 5.34
8069 11704 1.452651 ATGCCTCCAGCCATTCACG 60.453 57.895 0.00 0.00 42.71 4.35
8070 11705 2.012902 GCATGCCTCCAGCCATTCAC 62.013 60.000 6.36 0.00 42.71 3.18
8071 11706 1.755395 GCATGCCTCCAGCCATTCA 60.755 57.895 6.36 0.00 42.71 2.57
8072 11707 3.126528 GCATGCCTCCAGCCATTC 58.873 61.111 6.36 0.00 42.71 2.67
8112 11747 2.745492 GCTGAGACTGGCTGGTGC 60.745 66.667 0.00 0.00 38.76 5.01
8113 11748 1.079266 GAGCTGAGACTGGCTGGTG 60.079 63.158 0.00 0.00 39.05 4.17
8114 11749 2.644212 CGAGCTGAGACTGGCTGGT 61.644 63.158 0.00 0.00 39.05 4.00
8115 11750 2.183811 CGAGCTGAGACTGGCTGG 59.816 66.667 0.00 0.49 39.05 4.85
8116 11751 3.282271 TCGAGCTGAGACTGGCTG 58.718 61.111 0.00 0.00 39.05 4.85
8142 11777 1.153229 GTTAGGGTAAGGGCCAGCG 60.153 63.158 6.18 0.00 0.00 5.18
8189 11824 7.449704 AGGGGCAGATGATAATGAATAAGTTTC 59.550 37.037 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.