Multiple sequence alignment - TraesCS1D01G313500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G313500 | chr1D | 100.000 | 2336 | 0 | 0 | 1 | 2336 | 408846509 | 408848844 | 0.000000e+00 | 4314.0 |
1 | TraesCS1D01G313500 | chr5D | 92.985 | 1682 | 100 | 16 | 1 | 1677 | 311901583 | 311903251 | 0.000000e+00 | 2436.0 |
2 | TraesCS1D01G313500 | chr5D | 92.308 | 78 | 6 | 0 | 2084 | 2161 | 70203296 | 70203373 | 6.820000e-21 | 111.0 |
3 | TraesCS1D01G313500 | chr5D | 82.558 | 86 | 11 | 4 | 2121 | 2203 | 24091139 | 24091223 | 3.220000e-09 | 73.1 |
4 | TraesCS1D01G313500 | chr5A | 93.113 | 1394 | 88 | 7 | 291 | 1682 | 35638352 | 35636965 | 0.000000e+00 | 2036.0 |
5 | TraesCS1D01G313500 | chr5A | 87.847 | 1695 | 185 | 19 | 1 | 1683 | 621007974 | 621006289 | 0.000000e+00 | 1969.0 |
6 | TraesCS1D01G313500 | chr5A | 85.865 | 1705 | 208 | 29 | 1 | 1683 | 648908923 | 648907230 | 0.000000e+00 | 1783.0 |
7 | TraesCS1D01G313500 | chr5A | 85.561 | 651 | 77 | 16 | 1047 | 1687 | 599774849 | 599774206 | 0.000000e+00 | 665.0 |
8 | TraesCS1D01G313500 | chr5A | 85.891 | 567 | 63 | 16 | 1131 | 1687 | 599772693 | 599772134 | 2.590000e-164 | 588.0 |
9 | TraesCS1D01G313500 | chr5A | 85.538 | 567 | 65 | 16 | 1131 | 1687 | 599772003 | 599771444 | 5.600000e-161 | 577.0 |
10 | TraesCS1D01G313500 | chr5A | 92.208 | 77 | 6 | 0 | 2079 | 2155 | 384946924 | 384947000 | 2.450000e-20 | 110.0 |
11 | TraesCS1D01G313500 | chr5A | 94.118 | 51 | 3 | 0 | 2032 | 2082 | 689226 | 689276 | 6.920000e-11 | 78.7 |
12 | TraesCS1D01G313500 | chr5A | 91.489 | 47 | 4 | 0 | 2043 | 2089 | 470161873 | 470161827 | 5.390000e-07 | 65.8 |
13 | TraesCS1D01G313500 | chr7A | 87.544 | 1694 | 190 | 19 | 1 | 1682 | 149312249 | 149310565 | 0.000000e+00 | 1940.0 |
14 | TraesCS1D01G313500 | chr7A | 91.892 | 148 | 9 | 3 | 1536 | 1682 | 490968511 | 490968656 | 1.090000e-48 | 204.0 |
15 | TraesCS1D01G313500 | chr7A | 87.117 | 163 | 19 | 2 | 1520 | 1682 | 40953660 | 40953820 | 1.430000e-42 | 183.0 |
16 | TraesCS1D01G313500 | chr4A | 87.433 | 1679 | 192 | 17 | 9 | 1681 | 163215661 | 163213996 | 0.000000e+00 | 1914.0 |
17 | TraesCS1D01G313500 | chr4A | 86.052 | 1692 | 185 | 28 | 7 | 1682 | 477027584 | 477025928 | 0.000000e+00 | 1770.0 |
18 | TraesCS1D01G313500 | chr4A | 86.286 | 1050 | 139 | 5 | 1 | 1046 | 89694029 | 89692981 | 0.000000e+00 | 1136.0 |
19 | TraesCS1D01G313500 | chr4A | 86.503 | 652 | 71 | 16 | 1040 | 1682 | 89684263 | 89683620 | 0.000000e+00 | 701.0 |
20 | TraesCS1D01G313500 | chr4A | 86.462 | 325 | 31 | 13 | 1364 | 1682 | 60355726 | 60355409 | 6.180000e-91 | 344.0 |
21 | TraesCS1D01G313500 | chr4D | 85.418 | 1351 | 193 | 4 | 6 | 1353 | 348704395 | 348703046 | 0.000000e+00 | 1400.0 |
22 | TraesCS1D01G313500 | chr1B | 80.717 | 1338 | 244 | 13 | 6 | 1336 | 16951751 | 16953081 | 0.000000e+00 | 1029.0 |
23 | TraesCS1D01G313500 | chr1B | 91.026 | 78 | 7 | 0 | 2084 | 2161 | 327343926 | 327343849 | 3.170000e-19 | 106.0 |
24 | TraesCS1D01G313500 | chr1B | 85.542 | 83 | 8 | 4 | 2079 | 2161 | 121774695 | 121774617 | 1.490000e-12 | 84.2 |
25 | TraesCS1D01G313500 | chr3A | 75.242 | 1341 | 290 | 36 | 5 | 1324 | 523688554 | 523687235 | 1.190000e-167 | 599.0 |
26 | TraesCS1D01G313500 | chr1A | 86.506 | 415 | 36 | 15 | 1674 | 2081 | 73091745 | 73092146 | 2.760000e-119 | 438.0 |
27 | TraesCS1D01G313500 | chr6D | 89.683 | 252 | 16 | 4 | 1674 | 1916 | 469119377 | 469119627 | 1.740000e-81 | 313.0 |
28 | TraesCS1D01G313500 | chr6D | 90.184 | 163 | 12 | 3 | 1920 | 2080 | 469119775 | 469119935 | 2.350000e-50 | 209.0 |
29 | TraesCS1D01G313500 | chr6D | 88.525 | 61 | 5 | 2 | 2023 | 2082 | 42085249 | 42085308 | 3.220000e-09 | 73.1 |
30 | TraesCS1D01G313500 | chr6D | 89.655 | 58 | 5 | 1 | 2024 | 2080 | 356746875 | 356746932 | 3.220000e-09 | 73.1 |
31 | TraesCS1D01G313500 | chr6D | 83.784 | 74 | 7 | 4 | 2023 | 2091 | 450272268 | 450272341 | 5.390000e-07 | 65.8 |
32 | TraesCS1D01G313500 | chr3D | 84.375 | 192 | 24 | 6 | 1499 | 1686 | 264427782 | 264427593 | 1.430000e-42 | 183.0 |
33 | TraesCS1D01G313500 | chr3D | 78.462 | 130 | 24 | 2 | 191 | 318 | 136729301 | 136729174 | 5.350000e-12 | 82.4 |
34 | TraesCS1D01G313500 | chr7B | 93.902 | 82 | 5 | 0 | 2079 | 2160 | 362036544 | 362036463 | 8.760000e-25 | 124.0 |
35 | TraesCS1D01G313500 | chr7B | 91.667 | 72 | 6 | 0 | 2085 | 2156 | 437874334 | 437874263 | 1.480000e-17 | 100.0 |
36 | TraesCS1D01G313500 | chr7D | 92.405 | 79 | 6 | 0 | 2082 | 2160 | 289250833 | 289250755 | 1.900000e-21 | 113.0 |
37 | TraesCS1D01G313500 | chr7D | 93.878 | 49 | 3 | 0 | 2032 | 2080 | 64414388 | 64414340 | 8.950000e-10 | 75.0 |
38 | TraesCS1D01G313500 | chr6B | 92.208 | 77 | 6 | 0 | 2085 | 2161 | 432482394 | 432482318 | 2.450000e-20 | 110.0 |
39 | TraesCS1D01G313500 | chr6B | 89.655 | 58 | 3 | 2 | 2023 | 2080 | 276750700 | 276750754 | 1.160000e-08 | 71.3 |
40 | TraesCS1D01G313500 | chr6A | 85.542 | 83 | 8 | 3 | 2079 | 2161 | 53880028 | 53880106 | 1.490000e-12 | 84.2 |
41 | TraesCS1D01G313500 | chr6A | 86.486 | 74 | 10 | 0 | 191 | 264 | 503934558 | 503934631 | 5.350000e-12 | 82.4 |
42 | TraesCS1D01G313500 | chr6A | 78.400 | 125 | 21 | 4 | 191 | 312 | 133819771 | 133819892 | 2.490000e-10 | 76.8 |
43 | TraesCS1D01G313500 | chr2D | 88.333 | 60 | 5 | 2 | 2023 | 2080 | 637029922 | 637029981 | 1.160000e-08 | 71.3 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G313500 | chr1D | 408846509 | 408848844 | 2335 | False | 4314 | 4314 | 100.000000 | 1 | 2336 | 1 | chr1D.!!$F1 | 2335 |
1 | TraesCS1D01G313500 | chr5D | 311901583 | 311903251 | 1668 | False | 2436 | 2436 | 92.985000 | 1 | 1677 | 1 | chr5D.!!$F3 | 1676 |
2 | TraesCS1D01G313500 | chr5A | 35636965 | 35638352 | 1387 | True | 2036 | 2036 | 93.113000 | 291 | 1682 | 1 | chr5A.!!$R1 | 1391 |
3 | TraesCS1D01G313500 | chr5A | 621006289 | 621007974 | 1685 | True | 1969 | 1969 | 87.847000 | 1 | 1683 | 1 | chr5A.!!$R3 | 1682 |
4 | TraesCS1D01G313500 | chr5A | 648907230 | 648908923 | 1693 | True | 1783 | 1783 | 85.865000 | 1 | 1683 | 1 | chr5A.!!$R4 | 1682 |
5 | TraesCS1D01G313500 | chr5A | 599771444 | 599774849 | 3405 | True | 610 | 665 | 85.663333 | 1047 | 1687 | 3 | chr5A.!!$R5 | 640 |
6 | TraesCS1D01G313500 | chr7A | 149310565 | 149312249 | 1684 | True | 1940 | 1940 | 87.544000 | 1 | 1682 | 1 | chr7A.!!$R1 | 1681 |
7 | TraesCS1D01G313500 | chr4A | 163213996 | 163215661 | 1665 | True | 1914 | 1914 | 87.433000 | 9 | 1681 | 1 | chr4A.!!$R4 | 1672 |
8 | TraesCS1D01G313500 | chr4A | 477025928 | 477027584 | 1656 | True | 1770 | 1770 | 86.052000 | 7 | 1682 | 1 | chr4A.!!$R5 | 1675 |
9 | TraesCS1D01G313500 | chr4A | 89692981 | 89694029 | 1048 | True | 1136 | 1136 | 86.286000 | 1 | 1046 | 1 | chr4A.!!$R3 | 1045 |
10 | TraesCS1D01G313500 | chr4A | 89683620 | 89684263 | 643 | True | 701 | 701 | 86.503000 | 1040 | 1682 | 1 | chr4A.!!$R2 | 642 |
11 | TraesCS1D01G313500 | chr4D | 348703046 | 348704395 | 1349 | True | 1400 | 1400 | 85.418000 | 6 | 1353 | 1 | chr4D.!!$R1 | 1347 |
12 | TraesCS1D01G313500 | chr1B | 16951751 | 16953081 | 1330 | False | 1029 | 1029 | 80.717000 | 6 | 1336 | 1 | chr1B.!!$F1 | 1330 |
13 | TraesCS1D01G313500 | chr3A | 523687235 | 523688554 | 1319 | True | 599 | 599 | 75.242000 | 5 | 1324 | 1 | chr3A.!!$R1 | 1319 |
14 | TraesCS1D01G313500 | chr6D | 469119377 | 469119935 | 558 | False | 261 | 313 | 89.933500 | 1674 | 2080 | 2 | chr6D.!!$F4 | 406 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
265 | 269 | 1.150536 | GGGCTGGGTGTGAAAGACA | 59.849 | 57.895 | 0.0 | 0.0 | 0.0 | 3.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1916 | 4712 | 0.166161 | TCGACGACTCGCTTCTCTTG | 59.834 | 55.0 | 0.0 | 0.0 | 39.96 | 3.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
265 | 269 | 1.150536 | GGGCTGGGTGTGAAAGACA | 59.849 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
620 | 625 | 4.956075 | TGCTAGTGGAGATATGTTCAGACA | 59.044 | 41.667 | 0.00 | 0.00 | 40.71 | 3.41 |
753 | 758 | 6.668645 | AGGCAAATACACCACTAAATCCATA | 58.331 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
959 | 965 | 9.232473 | AGAAACTTATCTACATTTGTTCTTCCC | 57.768 | 33.333 | 0.00 | 0.00 | 0.00 | 3.97 |
1102 | 1108 | 2.669744 | TTTCACCATGGGGCTGGCAA | 62.670 | 55.000 | 18.09 | 0.00 | 40.15 | 4.52 |
1208 | 2596 | 5.297527 | TCAATGCTTGTATGCACCTATCTTG | 59.702 | 40.000 | 0.00 | 0.00 | 46.33 | 3.02 |
1279 | 3357 | 3.055891 | TGCGATGATTCTGAAGGAGAACA | 60.056 | 43.478 | 0.00 | 0.00 | 43.71 | 3.18 |
1385 | 4162 | 0.035439 | GCCTTTTGGAGTGATCGGGA | 60.035 | 55.000 | 0.00 | 0.00 | 44.07 | 5.14 |
1421 | 4202 | 3.068590 | CACTTGGAAGCATTTTGTGGAGT | 59.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
1422 | 4203 | 3.319122 | ACTTGGAAGCATTTTGTGGAGTC | 59.681 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
1424 | 4205 | 2.886523 | TGGAAGCATTTTGTGGAGTCTG | 59.113 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
1425 | 4206 | 2.887152 | GGAAGCATTTTGTGGAGTCTGT | 59.113 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1458 | 4241 | 6.320164 | TGTTCTACATAACTGTGTTGCCTTTT | 59.680 | 34.615 | 0.00 | 0.00 | 36.79 | 2.27 |
1459 | 4242 | 6.312399 | TCTACATAACTGTGTTGCCTTTTG | 57.688 | 37.500 | 0.00 | 0.00 | 36.79 | 2.44 |
1460 | 4243 | 6.058833 | TCTACATAACTGTGTTGCCTTTTGA | 58.941 | 36.000 | 0.00 | 0.00 | 36.79 | 2.69 |
1461 | 4244 | 5.590530 | ACATAACTGTGTTGCCTTTTGAA | 57.409 | 34.783 | 0.00 | 0.00 | 33.22 | 2.69 |
1497 | 4283 | 2.870411 | GTCTGAACTTAGTTTGGTGCGT | 59.130 | 45.455 | 0.00 | 0.00 | 0.00 | 5.24 |
1531 | 4317 | 1.172180 | TGCTTCAGGGTTTTCGCCTG | 61.172 | 55.000 | 0.00 | 0.00 | 38.63 | 4.85 |
1599 | 4385 | 4.363991 | AGTGCTTGATCTCACTTTTCCT | 57.636 | 40.909 | 9.13 | 0.00 | 40.32 | 3.36 |
1641 | 4427 | 3.373130 | GGAACTGGCTGTATTTCCGTTAC | 59.627 | 47.826 | 0.00 | 0.00 | 0.00 | 2.50 |
1810 | 4606 | 5.643348 | TGTTCACATAGGCAGATTGTAGTTG | 59.357 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1842 | 4638 | 9.577003 | CTAGTTAGACATTTTACGTCACAAAAC | 57.423 | 33.333 | 0.00 | 0.00 | 35.77 | 2.43 |
1854 | 4650 | 5.607477 | ACGTCACAAAACATTCTCTTCCTA | 58.393 | 37.500 | 0.00 | 0.00 | 0.00 | 2.94 |
1888 | 4684 | 6.509418 | TGCCATACTAAAACTTCAATCCAC | 57.491 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
1894 | 4690 | 6.187727 | ACTAAAACTTCAATCCACTCTCCA | 57.812 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
1900 | 4696 | 0.393537 | CAATCCACTCTCCAGCACCC | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1916 | 4712 | 0.601057 | ACCCCGCAAGCACAATTTAC | 59.399 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
1917 | 4713 | 0.600557 | CCCCGCAAGCACAATTTACA | 59.399 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1918 | 4714 | 1.000283 | CCCCGCAAGCACAATTTACAA | 60.000 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
1948 | 4888 | 2.028294 | AGTCGTCGAGAGGAGACTGTAA | 60.028 | 50.000 | 0.00 | 0.00 | 44.43 | 2.41 |
1958 | 4898 | 1.665161 | GGAGACTGTAACACGTCCACG | 60.665 | 57.143 | 0.00 | 0.00 | 46.33 | 4.94 |
1979 | 4920 | 1.102154 | CCACCTCGGCAATGCAATTA | 58.898 | 50.000 | 7.79 | 0.00 | 32.46 | 1.40 |
1995 | 4936 | 6.299805 | TGCAATTACAGAGAAGGTATGTCT | 57.700 | 37.500 | 0.00 | 0.00 | 30.24 | 3.41 |
1996 | 4937 | 6.711277 | TGCAATTACAGAGAAGGTATGTCTT | 58.289 | 36.000 | 0.00 | 0.00 | 26.83 | 3.01 |
2033 | 4974 | 8.815565 | TTGATACTATCAAAATTAAGTGGCCA | 57.184 | 30.769 | 0.00 | 0.00 | 45.57 | 5.36 |
2071 | 5013 | 0.684479 | GGCCCCCAAAATCTCAGGAC | 60.684 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2093 | 5035 | 4.640855 | CCTGTCGGTGTCGTGCGT | 62.641 | 66.667 | 0.00 | 0.00 | 37.69 | 5.24 |
2094 | 5036 | 2.657296 | CTGTCGGTGTCGTGCGTT | 60.657 | 61.111 | 0.00 | 0.00 | 37.69 | 4.84 |
2095 | 5037 | 2.927618 | CTGTCGGTGTCGTGCGTTG | 61.928 | 63.158 | 0.00 | 0.00 | 37.69 | 4.10 |
2096 | 5038 | 3.698463 | GTCGGTGTCGTGCGTTGG | 61.698 | 66.667 | 0.00 | 0.00 | 37.69 | 3.77 |
2097 | 5039 | 4.953868 | TCGGTGTCGTGCGTTGGG | 62.954 | 66.667 | 0.00 | 0.00 | 37.69 | 4.12 |
2099 | 5041 | 3.645975 | GGTGTCGTGCGTTGGGTG | 61.646 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
2100 | 5042 | 3.645975 | GTGTCGTGCGTTGGGTGG | 61.646 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
2101 | 5043 | 4.164087 | TGTCGTGCGTTGGGTGGT | 62.164 | 61.111 | 0.00 | 0.00 | 0.00 | 4.16 |
2102 | 5044 | 2.898343 | GTCGTGCGTTGGGTGGTT | 60.898 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
2103 | 5045 | 2.897846 | TCGTGCGTTGGGTGGTTG | 60.898 | 61.111 | 0.00 | 0.00 | 0.00 | 3.77 |
2104 | 5046 | 3.959975 | CGTGCGTTGGGTGGTTGG | 61.960 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
2105 | 5047 | 2.831284 | GTGCGTTGGGTGGTTGGT | 60.831 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
2106 | 5048 | 2.043852 | TGCGTTGGGTGGTTGGTT | 60.044 | 55.556 | 0.00 | 0.00 | 0.00 | 3.67 |
2107 | 5049 | 2.415426 | GCGTTGGGTGGTTGGTTG | 59.585 | 61.111 | 0.00 | 0.00 | 0.00 | 3.77 |
2108 | 5050 | 2.419739 | GCGTTGGGTGGTTGGTTGT | 61.420 | 57.895 | 0.00 | 0.00 | 0.00 | 3.32 |
2109 | 5051 | 1.102222 | GCGTTGGGTGGTTGGTTGTA | 61.102 | 55.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2110 | 5052 | 1.611519 | CGTTGGGTGGTTGGTTGTAT | 58.388 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2111 | 5053 | 1.268352 | CGTTGGGTGGTTGGTTGTATG | 59.732 | 52.381 | 0.00 | 0.00 | 0.00 | 2.39 |
2112 | 5054 | 1.000394 | GTTGGGTGGTTGGTTGTATGC | 60.000 | 52.381 | 0.00 | 0.00 | 0.00 | 3.14 |
2113 | 5055 | 0.186143 | TGGGTGGTTGGTTGTATGCA | 59.814 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2114 | 5056 | 1.203112 | TGGGTGGTTGGTTGTATGCAT | 60.203 | 47.619 | 3.79 | 3.79 | 0.00 | 3.96 |
2115 | 5057 | 1.204467 | GGGTGGTTGGTTGTATGCATG | 59.796 | 52.381 | 10.16 | 0.00 | 0.00 | 4.06 |
2116 | 5058 | 2.166829 | GGTGGTTGGTTGTATGCATGA | 58.833 | 47.619 | 10.16 | 0.00 | 0.00 | 3.07 |
2117 | 5059 | 2.760092 | GGTGGTTGGTTGTATGCATGAT | 59.240 | 45.455 | 10.16 | 0.00 | 0.00 | 2.45 |
2118 | 5060 | 3.181487 | GGTGGTTGGTTGTATGCATGATC | 60.181 | 47.826 | 10.16 | 0.33 | 0.00 | 2.92 |
2119 | 5061 | 2.682352 | TGGTTGGTTGTATGCATGATCG | 59.318 | 45.455 | 10.16 | 0.00 | 0.00 | 3.69 |
2120 | 5062 | 2.682856 | GGTTGGTTGTATGCATGATCGT | 59.317 | 45.455 | 10.16 | 0.00 | 0.00 | 3.73 |
2121 | 5063 | 3.128589 | GGTTGGTTGTATGCATGATCGTT | 59.871 | 43.478 | 10.16 | 0.00 | 0.00 | 3.85 |
2122 | 5064 | 4.097714 | GTTGGTTGTATGCATGATCGTTG | 58.902 | 43.478 | 10.16 | 0.00 | 0.00 | 4.10 |
2123 | 5065 | 2.097304 | TGGTTGTATGCATGATCGTTGC | 59.903 | 45.455 | 10.16 | 12.26 | 40.55 | 4.17 |
2124 | 5066 | 2.355756 | GGTTGTATGCATGATCGTTGCT | 59.644 | 45.455 | 10.16 | 8.86 | 40.77 | 3.91 |
2125 | 5067 | 3.181497 | GGTTGTATGCATGATCGTTGCTT | 60.181 | 43.478 | 10.16 | 14.80 | 40.77 | 3.91 |
2126 | 5068 | 4.414852 | GTTGTATGCATGATCGTTGCTTT | 58.585 | 39.130 | 10.16 | 10.28 | 40.77 | 3.51 |
2127 | 5069 | 5.448496 | GGTTGTATGCATGATCGTTGCTTTA | 60.448 | 40.000 | 10.16 | 9.52 | 40.77 | 1.85 |
2128 | 5070 | 6.201517 | GTTGTATGCATGATCGTTGCTTTAT | 58.798 | 36.000 | 10.16 | 8.70 | 40.77 | 1.40 |
2129 | 5071 | 7.351981 | GTTGTATGCATGATCGTTGCTTTATA | 58.648 | 34.615 | 10.16 | 7.92 | 40.77 | 0.98 |
2130 | 5072 | 7.671495 | TGTATGCATGATCGTTGCTTTATAT | 57.329 | 32.000 | 10.16 | 8.14 | 40.77 | 0.86 |
2131 | 5073 | 8.770438 | TGTATGCATGATCGTTGCTTTATATA | 57.230 | 30.769 | 10.16 | 7.37 | 40.77 | 0.86 |
2132 | 5074 | 9.382275 | TGTATGCATGATCGTTGCTTTATATAT | 57.618 | 29.630 | 10.16 | 7.04 | 40.77 | 0.86 |
2146 | 5088 | 6.730960 | CTTTATATATAAAGCGGGGCGAAA | 57.269 | 37.500 | 25.10 | 1.66 | 41.69 | 3.46 |
2147 | 5089 | 6.730960 | TTTATATATAAAGCGGGGCGAAAG | 57.269 | 37.500 | 12.90 | 0.00 | 0.00 | 2.62 |
2148 | 5090 | 1.892209 | ATATAAAGCGGGGCGAAAGG | 58.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
2162 | 5104 | 3.891056 | CGAAAGGCTTTTTCGGTAAGT | 57.109 | 42.857 | 14.66 | 0.00 | 45.17 | 2.24 |
2163 | 5105 | 3.551551 | CGAAAGGCTTTTTCGGTAAGTG | 58.448 | 45.455 | 14.66 | 1.02 | 45.17 | 3.16 |
2164 | 5106 | 3.608474 | CGAAAGGCTTTTTCGGTAAGTGG | 60.608 | 47.826 | 14.66 | 0.00 | 45.17 | 4.00 |
2165 | 5107 | 2.651382 | AGGCTTTTTCGGTAAGTGGT | 57.349 | 45.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2166 | 5108 | 2.501261 | AGGCTTTTTCGGTAAGTGGTC | 58.499 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
2167 | 5109 | 1.538512 | GGCTTTTTCGGTAAGTGGTCC | 59.461 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
2168 | 5110 | 2.223745 | GCTTTTTCGGTAAGTGGTCCA | 58.776 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
2169 | 5111 | 2.225727 | GCTTTTTCGGTAAGTGGTCCAG | 59.774 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2170 | 5112 | 3.735591 | CTTTTTCGGTAAGTGGTCCAGA | 58.264 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
2171 | 5113 | 3.842007 | TTTTCGGTAAGTGGTCCAGAA | 57.158 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
2172 | 5114 | 2.825861 | TTCGGTAAGTGGTCCAGAAC | 57.174 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2173 | 5115 | 2.005370 | TCGGTAAGTGGTCCAGAACT | 57.995 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2174 | 5116 | 3.159213 | TCGGTAAGTGGTCCAGAACTA | 57.841 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
2175 | 5117 | 3.499338 | TCGGTAAGTGGTCCAGAACTAA | 58.501 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
2176 | 5118 | 4.091549 | TCGGTAAGTGGTCCAGAACTAAT | 58.908 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
2177 | 5119 | 4.081862 | TCGGTAAGTGGTCCAGAACTAATG | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 1.90 |
2178 | 5120 | 3.939592 | GGTAAGTGGTCCAGAACTAATGC | 59.060 | 47.826 | 0.00 | 0.00 | 0.00 | 3.56 |
2179 | 5121 | 4.323562 | GGTAAGTGGTCCAGAACTAATGCT | 60.324 | 45.833 | 0.00 | 0.00 | 0.00 | 3.79 |
2180 | 5122 | 3.618690 | AGTGGTCCAGAACTAATGCTC | 57.381 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
2181 | 5123 | 3.177228 | AGTGGTCCAGAACTAATGCTCT | 58.823 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
2182 | 5124 | 3.055530 | AGTGGTCCAGAACTAATGCTCTG | 60.056 | 47.826 | 0.00 | 0.00 | 39.06 | 3.35 |
2183 | 5125 | 2.906389 | TGGTCCAGAACTAATGCTCTGT | 59.094 | 45.455 | 0.00 | 0.00 | 37.89 | 3.41 |
2184 | 5126 | 3.327757 | TGGTCCAGAACTAATGCTCTGTT | 59.672 | 43.478 | 0.00 | 0.00 | 37.89 | 3.16 |
2185 | 5127 | 4.202461 | TGGTCCAGAACTAATGCTCTGTTT | 60.202 | 41.667 | 0.00 | 0.00 | 37.89 | 2.83 |
2186 | 5128 | 4.762251 | GGTCCAGAACTAATGCTCTGTTTT | 59.238 | 41.667 | 0.00 | 0.00 | 37.89 | 2.43 |
2187 | 5129 | 5.335191 | GGTCCAGAACTAATGCTCTGTTTTG | 60.335 | 44.000 | 0.00 | 0.00 | 37.89 | 2.44 |
2188 | 5130 | 5.470098 | GTCCAGAACTAATGCTCTGTTTTGA | 59.530 | 40.000 | 0.00 | 0.00 | 37.89 | 2.69 |
2189 | 5131 | 5.702670 | TCCAGAACTAATGCTCTGTTTTGAG | 59.297 | 40.000 | 0.00 | 0.00 | 37.89 | 3.02 |
2190 | 5132 | 5.702670 | CCAGAACTAATGCTCTGTTTTGAGA | 59.297 | 40.000 | 0.00 | 0.00 | 37.89 | 3.27 |
2191 | 5133 | 6.373774 | CCAGAACTAATGCTCTGTTTTGAGAT | 59.626 | 38.462 | 0.00 | 0.00 | 37.89 | 2.75 |
2192 | 5134 | 7.550551 | CCAGAACTAATGCTCTGTTTTGAGATA | 59.449 | 37.037 | 0.00 | 0.00 | 37.89 | 1.98 |
2193 | 5135 | 8.939929 | CAGAACTAATGCTCTGTTTTGAGATAA | 58.060 | 33.333 | 0.00 | 0.00 | 35.38 | 1.75 |
2194 | 5136 | 9.160496 | AGAACTAATGCTCTGTTTTGAGATAAG | 57.840 | 33.333 | 0.00 | 0.00 | 36.23 | 1.73 |
2195 | 5137 | 9.155975 | GAACTAATGCTCTGTTTTGAGATAAGA | 57.844 | 33.333 | 0.00 | 0.00 | 36.23 | 2.10 |
2196 | 5138 | 9.507329 | AACTAATGCTCTGTTTTGAGATAAGAA | 57.493 | 29.630 | 0.00 | 0.00 | 36.23 | 2.52 |
2197 | 5139 | 9.160496 | ACTAATGCTCTGTTTTGAGATAAGAAG | 57.840 | 33.333 | 0.00 | 0.00 | 36.23 | 2.85 |
2198 | 5140 | 9.376075 | CTAATGCTCTGTTTTGAGATAAGAAGA | 57.624 | 33.333 | 0.00 | 0.00 | 36.23 | 2.87 |
2199 | 5141 | 7.846644 | ATGCTCTGTTTTGAGATAAGAAGAG | 57.153 | 36.000 | 0.00 | 0.00 | 36.23 | 2.85 |
2200 | 5142 | 6.169094 | TGCTCTGTTTTGAGATAAGAAGAGG | 58.831 | 40.000 | 0.00 | 0.00 | 36.23 | 3.69 |
2201 | 5143 | 5.584251 | GCTCTGTTTTGAGATAAGAAGAGGG | 59.416 | 44.000 | 0.00 | 0.00 | 36.23 | 4.30 |
2202 | 5144 | 6.575254 | GCTCTGTTTTGAGATAAGAAGAGGGA | 60.575 | 42.308 | 0.00 | 0.00 | 36.23 | 4.20 |
2203 | 5145 | 6.702329 | TCTGTTTTGAGATAAGAAGAGGGAC | 58.298 | 40.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2204 | 5146 | 6.270000 | TCTGTTTTGAGATAAGAAGAGGGACA | 59.730 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
2205 | 5147 | 6.467677 | TGTTTTGAGATAAGAAGAGGGACAG | 58.532 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2206 | 5148 | 6.270000 | TGTTTTGAGATAAGAAGAGGGACAGA | 59.730 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2207 | 5149 | 7.038017 | TGTTTTGAGATAAGAAGAGGGACAGAT | 60.038 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
2208 | 5150 | 7.502060 | TTTGAGATAAGAAGAGGGACAGATT | 57.498 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2209 | 5151 | 8.609617 | TTTGAGATAAGAAGAGGGACAGATTA | 57.390 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
2210 | 5152 | 8.609617 | TTGAGATAAGAAGAGGGACAGATTAA | 57.390 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2211 | 5153 | 8.789767 | TGAGATAAGAAGAGGGACAGATTAAT | 57.210 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2212 | 5154 | 9.883293 | TGAGATAAGAAGAGGGACAGATTAATA | 57.117 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
2215 | 5157 | 9.796120 | GATAAGAAGAGGGACAGATTAATATCG | 57.204 | 37.037 | 0.00 | 0.00 | 35.85 | 2.92 |
2216 | 5158 | 6.597832 | AGAAGAGGGACAGATTAATATCGG | 57.402 | 41.667 | 0.00 | 0.00 | 35.85 | 4.18 |
2217 | 5159 | 6.078664 | AGAAGAGGGACAGATTAATATCGGT | 58.921 | 40.000 | 0.00 | 0.00 | 41.09 | 4.69 |
2218 | 5160 | 5.730296 | AGAGGGACAGATTAATATCGGTG | 57.270 | 43.478 | 0.00 | 0.00 | 38.96 | 4.94 |
2219 | 5161 | 4.021016 | AGAGGGACAGATTAATATCGGTGC | 60.021 | 45.833 | 0.00 | 0.00 | 43.20 | 5.01 |
2220 | 5162 | 3.904339 | AGGGACAGATTAATATCGGTGCT | 59.096 | 43.478 | 9.03 | 0.00 | 43.36 | 4.40 |
2221 | 5163 | 3.997021 | GGGACAGATTAATATCGGTGCTG | 59.003 | 47.826 | 9.03 | 0.00 | 43.36 | 4.41 |
2222 | 5164 | 3.997021 | GGACAGATTAATATCGGTGCTGG | 59.003 | 47.826 | 0.00 | 0.00 | 41.62 | 4.85 |
2223 | 5165 | 3.403038 | ACAGATTAATATCGGTGCTGGC | 58.597 | 45.455 | 0.00 | 0.00 | 37.72 | 4.85 |
2224 | 5166 | 3.181455 | ACAGATTAATATCGGTGCTGGCA | 60.181 | 43.478 | 0.00 | 0.00 | 37.72 | 4.92 |
2225 | 5167 | 4.005650 | CAGATTAATATCGGTGCTGGCAT | 58.994 | 43.478 | 0.00 | 0.00 | 35.85 | 4.40 |
2226 | 5168 | 5.178061 | CAGATTAATATCGGTGCTGGCATA | 58.822 | 41.667 | 0.00 | 0.00 | 35.85 | 3.14 |
2227 | 5169 | 5.643348 | CAGATTAATATCGGTGCTGGCATAA | 59.357 | 40.000 | 0.00 | 0.00 | 35.85 | 1.90 |
2228 | 5170 | 5.877012 | AGATTAATATCGGTGCTGGCATAAG | 59.123 | 40.000 | 0.00 | 0.00 | 35.85 | 1.73 |
2229 | 5171 | 3.492102 | AATATCGGTGCTGGCATAAGT | 57.508 | 42.857 | 0.00 | 0.00 | 0.00 | 2.24 |
2230 | 5172 | 4.617253 | AATATCGGTGCTGGCATAAGTA | 57.383 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
2231 | 5173 | 4.617253 | ATATCGGTGCTGGCATAAGTAA | 57.383 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
2232 | 5174 | 2.309528 | TCGGTGCTGGCATAAGTAAG | 57.690 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2233 | 5175 | 1.828595 | TCGGTGCTGGCATAAGTAAGA | 59.171 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
2234 | 5176 | 2.235155 | TCGGTGCTGGCATAAGTAAGAA | 59.765 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2235 | 5177 | 2.609459 | CGGTGCTGGCATAAGTAAGAAG | 59.391 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2236 | 5178 | 3.610911 | GGTGCTGGCATAAGTAAGAAGT | 58.389 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
2237 | 5179 | 4.010349 | GGTGCTGGCATAAGTAAGAAGTT | 58.990 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
2238 | 5180 | 4.095036 | GGTGCTGGCATAAGTAAGAAGTTC | 59.905 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
2239 | 5181 | 4.938226 | GTGCTGGCATAAGTAAGAAGTTCT | 59.062 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2240 | 5182 | 6.106673 | GTGCTGGCATAAGTAAGAAGTTCTA | 58.893 | 40.000 | 5.65 | 0.00 | 0.00 | 2.10 |
2241 | 5183 | 6.256757 | GTGCTGGCATAAGTAAGAAGTTCTAG | 59.743 | 42.308 | 5.65 | 0.00 | 0.00 | 2.43 |
2242 | 5184 | 5.235401 | GCTGGCATAAGTAAGAAGTTCTAGC | 59.765 | 44.000 | 5.65 | 3.60 | 0.00 | 3.42 |
2243 | 5185 | 6.294361 | TGGCATAAGTAAGAAGTTCTAGCA | 57.706 | 37.500 | 5.65 | 0.00 | 0.00 | 3.49 |
2244 | 5186 | 6.707290 | TGGCATAAGTAAGAAGTTCTAGCAA | 58.293 | 36.000 | 5.65 | 0.00 | 0.00 | 3.91 |
2245 | 5187 | 7.165485 | TGGCATAAGTAAGAAGTTCTAGCAAA | 58.835 | 34.615 | 5.65 | 0.00 | 0.00 | 3.68 |
2246 | 5188 | 7.663905 | TGGCATAAGTAAGAAGTTCTAGCAAAA | 59.336 | 33.333 | 5.65 | 0.00 | 0.00 | 2.44 |
2247 | 5189 | 8.178313 | GGCATAAGTAAGAAGTTCTAGCAAAAG | 58.822 | 37.037 | 5.65 | 0.00 | 0.00 | 2.27 |
2248 | 5190 | 8.722394 | GCATAAGTAAGAAGTTCTAGCAAAAGT | 58.278 | 33.333 | 5.65 | 0.00 | 0.00 | 2.66 |
2251 | 5193 | 8.507524 | AAGTAAGAAGTTCTAGCAAAAGTTGT | 57.492 | 30.769 | 5.65 | 0.00 | 0.00 | 3.32 |
2252 | 5194 | 9.609346 | AAGTAAGAAGTTCTAGCAAAAGTTGTA | 57.391 | 29.630 | 5.65 | 0.00 | 0.00 | 2.41 |
2253 | 5195 | 9.609346 | AGTAAGAAGTTCTAGCAAAAGTTGTAA | 57.391 | 29.630 | 5.65 | 0.00 | 0.00 | 2.41 |
2256 | 5198 | 7.875971 | AGAAGTTCTAGCAAAAGTTGTAATGG | 58.124 | 34.615 | 2.75 | 0.00 | 0.00 | 3.16 |
2257 | 5199 | 7.719633 | AGAAGTTCTAGCAAAAGTTGTAATGGA | 59.280 | 33.333 | 2.75 | 0.00 | 0.00 | 3.41 |
2258 | 5200 | 7.817418 | AGTTCTAGCAAAAGTTGTAATGGAA | 57.183 | 32.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2259 | 5201 | 8.232913 | AGTTCTAGCAAAAGTTGTAATGGAAA | 57.767 | 30.769 | 0.00 | 0.00 | 0.00 | 3.13 |
2260 | 5202 | 8.691797 | AGTTCTAGCAAAAGTTGTAATGGAAAA | 58.308 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
2261 | 5203 | 9.308318 | GTTCTAGCAAAAGTTGTAATGGAAAAA | 57.692 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
2262 | 5204 | 9.528018 | TTCTAGCAAAAGTTGTAATGGAAAAAG | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
2263 | 5205 | 8.691797 | TCTAGCAAAAGTTGTAATGGAAAAAGT | 58.308 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2264 | 5206 | 9.959749 | CTAGCAAAAGTTGTAATGGAAAAAGTA | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2272 | 5214 | 9.802039 | AGTTGTAATGGAAAAAGTATAAGGTCA | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
2274 | 5216 | 8.801882 | TGTAATGGAAAAAGTATAAGGTCAGG | 57.198 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
2275 | 5217 | 8.387813 | TGTAATGGAAAAAGTATAAGGTCAGGT | 58.612 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
2276 | 5218 | 7.939784 | AATGGAAAAAGTATAAGGTCAGGTC | 57.060 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2277 | 5219 | 6.697641 | TGGAAAAAGTATAAGGTCAGGTCT | 57.302 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
2278 | 5220 | 6.708285 | TGGAAAAAGTATAAGGTCAGGTCTC | 58.292 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2279 | 5221 | 6.500751 | TGGAAAAAGTATAAGGTCAGGTCTCT | 59.499 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
2280 | 5222 | 7.676893 | TGGAAAAAGTATAAGGTCAGGTCTCTA | 59.323 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2281 | 5223 | 8.198778 | GGAAAAAGTATAAGGTCAGGTCTCTAG | 58.801 | 40.741 | 0.00 | 0.00 | 0.00 | 2.43 |
2282 | 5224 | 6.718522 | AAAGTATAAGGTCAGGTCTCTAGC | 57.281 | 41.667 | 0.00 | 0.00 | 0.00 | 3.42 |
2283 | 5225 | 5.390087 | AGTATAAGGTCAGGTCTCTAGCA | 57.610 | 43.478 | 0.00 | 0.00 | 0.00 | 3.49 |
2284 | 5226 | 5.767670 | AGTATAAGGTCAGGTCTCTAGCAA | 58.232 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
2285 | 5227 | 6.377912 | AGTATAAGGTCAGGTCTCTAGCAAT | 58.622 | 40.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2286 | 5228 | 6.841755 | AGTATAAGGTCAGGTCTCTAGCAATT | 59.158 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
2287 | 5229 | 4.917906 | AAGGTCAGGTCTCTAGCAATTT | 57.082 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
2288 | 5230 | 4.479786 | AGGTCAGGTCTCTAGCAATTTC | 57.520 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
2289 | 5231 | 3.840666 | AGGTCAGGTCTCTAGCAATTTCA | 59.159 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2290 | 5232 | 4.472833 | AGGTCAGGTCTCTAGCAATTTCAT | 59.527 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2291 | 5233 | 4.574013 | GGTCAGGTCTCTAGCAATTTCATG | 59.426 | 45.833 | 0.00 | 0.00 | 0.00 | 3.07 |
2292 | 5234 | 4.034975 | GTCAGGTCTCTAGCAATTTCATGC | 59.965 | 45.833 | 0.00 | 0.00 | 46.78 | 4.06 |
2306 | 5248 | 7.745015 | GCAATTTCATGCTTGACAATATTTGT | 58.255 | 30.769 | 1.02 | 0.00 | 44.13 | 2.83 |
2307 | 5249 | 8.871862 | GCAATTTCATGCTTGACAATATTTGTA | 58.128 | 29.630 | 1.02 | 0.00 | 42.73 | 2.41 |
2309 | 5251 | 9.926158 | AATTTCATGCTTGACAATATTTGTACA | 57.074 | 25.926 | 1.02 | 0.00 | 45.52 | 2.90 |
2310 | 5252 | 8.741101 | TTTCATGCTTGACAATATTTGTACAC | 57.259 | 30.769 | 1.02 | 0.00 | 45.52 | 2.90 |
2311 | 5253 | 7.446001 | TCATGCTTGACAATATTTGTACACA | 57.554 | 32.000 | 0.00 | 0.00 | 45.52 | 3.72 |
2312 | 5254 | 7.304735 | TCATGCTTGACAATATTTGTACACAC | 58.695 | 34.615 | 0.00 | 0.00 | 45.52 | 3.82 |
2313 | 5255 | 6.625873 | TGCTTGACAATATTTGTACACACA | 57.374 | 33.333 | 0.00 | 0.00 | 45.52 | 3.72 |
2314 | 5256 | 6.434596 | TGCTTGACAATATTTGTACACACAC | 58.565 | 36.000 | 0.00 | 0.00 | 45.52 | 3.82 |
2315 | 5257 | 5.563751 | GCTTGACAATATTTGTACACACACG | 59.436 | 40.000 | 0.00 | 0.00 | 45.52 | 4.49 |
2316 | 5258 | 5.024768 | TGACAATATTTGTACACACACGC | 57.975 | 39.130 | 0.00 | 0.00 | 45.52 | 5.34 |
2317 | 5259 | 4.060288 | ACAATATTTGTACACACACGCG | 57.940 | 40.909 | 3.53 | 3.53 | 43.27 | 6.01 |
2318 | 5260 | 2.798834 | ATATTTGTACACACACGCGC | 57.201 | 45.000 | 5.73 | 0.00 | 33.30 | 6.86 |
2319 | 5261 | 0.435388 | TATTTGTACACACACGCGCG | 59.565 | 50.000 | 30.96 | 30.96 | 33.30 | 6.86 |
2320 | 5262 | 1.492319 | ATTTGTACACACACGCGCGT | 61.492 | 50.000 | 32.73 | 32.73 | 33.30 | 6.01 |
2330 | 5272 | 4.072913 | ACGCGCGTGAAGTATGAG | 57.927 | 55.556 | 37.37 | 0.93 | 0.00 | 2.90 |
2331 | 5273 | 1.504900 | ACGCGCGTGAAGTATGAGA | 59.495 | 52.632 | 37.37 | 0.00 | 0.00 | 3.27 |
2332 | 5274 | 0.100682 | ACGCGCGTGAAGTATGAGAT | 59.899 | 50.000 | 37.37 | 4.40 | 0.00 | 2.75 |
2333 | 5275 | 0.772926 | CGCGCGTGAAGTATGAGATC | 59.227 | 55.000 | 24.19 | 0.00 | 0.00 | 2.75 |
2334 | 5276 | 0.772926 | GCGCGTGAAGTATGAGATCG | 59.227 | 55.000 | 8.43 | 0.00 | 0.00 | 3.69 |
2335 | 5277 | 1.860399 | GCGCGTGAAGTATGAGATCGT | 60.860 | 52.381 | 8.43 | 0.00 | 0.00 | 3.73 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
65 | 67 | 4.646572 | AGAGGGATGAGTTCAACAAAGTC | 58.353 | 43.478 | 0.00 | 0.00 | 37.75 | 3.01 |
265 | 269 | 8.641498 | AAAAGTGAGATATTCTGTTTGTGGAT | 57.359 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
320 | 324 | 1.434513 | ATCTTGCCACAACCCCTCCA | 61.435 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
528 | 532 | 3.181434 | TGAACAAGGCTGGATAAGTGGTT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
530 | 534 | 3.012518 | CTGAACAAGGCTGGATAAGTGG | 58.987 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
753 | 758 | 8.752187 | GCAAGATCTCTCTCCAGATAAGAATAT | 58.248 | 37.037 | 0.00 | 0.00 | 32.94 | 1.28 |
959 | 965 | 0.400213 | TACCCTTGCCACTGGACAAG | 59.600 | 55.000 | 18.32 | 18.32 | 42.35 | 3.16 |
1065 | 1071 | 4.023291 | TGAAATATTGTTCCCCTTGAGGC | 58.977 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
1089 | 1095 | 2.165167 | CATATAGTTGCCAGCCCCATG | 58.835 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
1102 | 1108 | 5.582950 | TTCCAAATAGCCCAGCATATAGT | 57.417 | 39.130 | 0.00 | 0.00 | 0.00 | 2.12 |
1279 | 3357 | 4.202243 | GCAGAGCCTCATCATCTCTTTAGT | 60.202 | 45.833 | 0.00 | 0.00 | 35.19 | 2.24 |
1353 | 4127 | 3.966665 | TCCAAAAGGCTTCCAAATGACTT | 59.033 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
1385 | 4162 | 3.162666 | TCCAAGTGTCTTGGTATCTCGT | 58.837 | 45.455 | 22.50 | 0.00 | 40.40 | 4.18 |
1421 | 4202 | 9.208022 | CAGTTATGTAGAACATCAGAAAACAGA | 57.792 | 33.333 | 0.00 | 0.00 | 39.88 | 3.41 |
1422 | 4203 | 8.993121 | ACAGTTATGTAGAACATCAGAAAACAG | 58.007 | 33.333 | 0.00 | 0.00 | 39.88 | 3.16 |
1424 | 4205 | 8.774586 | ACACAGTTATGTAGAACATCAGAAAAC | 58.225 | 33.333 | 0.00 | 0.00 | 39.88 | 2.43 |
1425 | 4206 | 8.902540 | ACACAGTTATGTAGAACATCAGAAAA | 57.097 | 30.769 | 0.00 | 0.00 | 39.88 | 2.29 |
1458 | 4241 | 2.308570 | AGACCACATTACAGCCCATTCA | 59.691 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
1459 | 4242 | 2.684881 | CAGACCACATTACAGCCCATTC | 59.315 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
1460 | 4243 | 2.308570 | TCAGACCACATTACAGCCCATT | 59.691 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1461 | 4244 | 1.915489 | TCAGACCACATTACAGCCCAT | 59.085 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
1497 | 4283 | 0.743688 | AAGCACCATCAACACGCAAA | 59.256 | 45.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1531 | 4317 | 0.725117 | CAATCGAAACGCCCACTACC | 59.275 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1555 | 4341 | 2.116125 | GGAAACCTGCTGTGGGCT | 59.884 | 61.111 | 0.00 | 0.00 | 42.39 | 5.19 |
1578 | 4364 | 4.041444 | AGAGGAAAAGTGAGATCAAGCACT | 59.959 | 41.667 | 9.31 | 9.31 | 46.59 | 4.40 |
1597 | 4383 | 4.321230 | CCGAATTCAAACAAGGGAAAGAGG | 60.321 | 45.833 | 6.22 | 0.00 | 0.00 | 3.69 |
1599 | 4385 | 4.465886 | TCCGAATTCAAACAAGGGAAAGA | 58.534 | 39.130 | 6.22 | 0.00 | 0.00 | 2.52 |
1641 | 4427 | 6.992123 | GGCTAATCCCCTTTCCATTAAAAATG | 59.008 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
1775 | 4571 | 7.011950 | TCTGCCTATGTGAACATATTTAAACCG | 59.988 | 37.037 | 3.70 | 0.00 | 38.09 | 4.44 |
1810 | 4606 | 7.274904 | TGACGTAAAATGTCTAACTAGCATGAC | 59.725 | 37.037 | 0.00 | 0.00 | 35.24 | 3.06 |
1865 | 4661 | 6.245408 | AGTGGATTGAAGTTTTAGTATGGCA | 58.755 | 36.000 | 0.00 | 0.00 | 0.00 | 4.92 |
1873 | 4669 | 5.003804 | GCTGGAGAGTGGATTGAAGTTTTA | 58.996 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
1885 | 4681 | 4.087892 | CGGGGTGCTGGAGAGTGG | 62.088 | 72.222 | 0.00 | 0.00 | 0.00 | 4.00 |
1888 | 4684 | 3.965539 | CTTGCGGGGTGCTGGAGAG | 62.966 | 68.421 | 0.00 | 0.00 | 46.63 | 3.20 |
1894 | 4690 | 4.892965 | TTGTGCTTGCGGGGTGCT | 62.893 | 61.111 | 0.00 | 0.00 | 46.63 | 4.40 |
1900 | 4696 | 3.058293 | TCTCTTGTAAATTGTGCTTGCGG | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 5.69 |
1904 | 4700 | 4.515191 | TCGCTTCTCTTGTAAATTGTGCTT | 59.485 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
1916 | 4712 | 0.166161 | TCGACGACTCGCTTCTCTTG | 59.834 | 55.000 | 0.00 | 0.00 | 39.96 | 3.02 |
1917 | 4713 | 0.444651 | CTCGACGACTCGCTTCTCTT | 59.555 | 55.000 | 0.00 | 0.00 | 39.96 | 2.85 |
1918 | 4714 | 0.390078 | TCTCGACGACTCGCTTCTCT | 60.390 | 55.000 | 0.00 | 0.00 | 39.96 | 3.10 |
1972 | 4913 | 6.299805 | AGACATACCTTCTCTGTAATTGCA | 57.700 | 37.500 | 0.00 | 0.00 | 0.00 | 4.08 |
2009 | 4950 | 8.815565 | TTGGCCACTTAATTTTGATAGTATCA | 57.184 | 30.769 | 3.88 | 8.84 | 37.55 | 2.15 |
2033 | 4974 | 2.678479 | GCCCGGGGCGAAAATTTAATTT | 60.678 | 45.455 | 24.63 | 0.00 | 39.62 | 1.82 |
2036 | 4977 | 1.891616 | GCCCGGGGCGAAAATTTAA | 59.108 | 52.632 | 24.63 | 0.00 | 39.62 | 1.52 |
2056 | 4998 | 0.394352 | CCCGGTCCTGAGATTTTGGG | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2080 | 5022 | 4.953868 | CCCAACGCACGACACCGA | 62.954 | 66.667 | 0.00 | 0.00 | 39.50 | 4.69 |
2082 | 5024 | 3.645975 | CACCCAACGCACGACACC | 61.646 | 66.667 | 0.00 | 0.00 | 0.00 | 4.16 |
2083 | 5025 | 3.645975 | CCACCCAACGCACGACAC | 61.646 | 66.667 | 0.00 | 0.00 | 0.00 | 3.67 |
2084 | 5026 | 3.683966 | AACCACCCAACGCACGACA | 62.684 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
2085 | 5027 | 2.898343 | AACCACCCAACGCACGAC | 60.898 | 61.111 | 0.00 | 0.00 | 0.00 | 4.34 |
2086 | 5028 | 2.897846 | CAACCACCCAACGCACGA | 60.898 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
2087 | 5029 | 3.959975 | CCAACCACCCAACGCACG | 61.960 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
2088 | 5030 | 2.419739 | AACCAACCACCCAACGCAC | 61.420 | 57.895 | 0.00 | 0.00 | 0.00 | 5.34 |
2089 | 5031 | 2.043852 | AACCAACCACCCAACGCA | 60.044 | 55.556 | 0.00 | 0.00 | 0.00 | 5.24 |
2090 | 5032 | 1.102222 | TACAACCAACCACCCAACGC | 61.102 | 55.000 | 0.00 | 0.00 | 0.00 | 4.84 |
2091 | 5033 | 1.268352 | CATACAACCAACCACCCAACG | 59.732 | 52.381 | 0.00 | 0.00 | 0.00 | 4.10 |
2092 | 5034 | 1.000394 | GCATACAACCAACCACCCAAC | 60.000 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
2093 | 5035 | 1.333177 | GCATACAACCAACCACCCAA | 58.667 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2094 | 5036 | 0.186143 | TGCATACAACCAACCACCCA | 59.814 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
2095 | 5037 | 1.204467 | CATGCATACAACCAACCACCC | 59.796 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
2096 | 5038 | 2.166829 | TCATGCATACAACCAACCACC | 58.833 | 47.619 | 0.00 | 0.00 | 0.00 | 4.61 |
2097 | 5039 | 3.487376 | CGATCATGCATACAACCAACCAC | 60.487 | 47.826 | 0.00 | 0.00 | 0.00 | 4.16 |
2098 | 5040 | 2.682352 | CGATCATGCATACAACCAACCA | 59.318 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
2099 | 5041 | 2.682856 | ACGATCATGCATACAACCAACC | 59.317 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
2100 | 5042 | 4.097714 | CAACGATCATGCATACAACCAAC | 58.902 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
2101 | 5043 | 3.427368 | GCAACGATCATGCATACAACCAA | 60.427 | 43.478 | 13.94 | 0.00 | 43.29 | 3.67 |
2102 | 5044 | 2.097304 | GCAACGATCATGCATACAACCA | 59.903 | 45.455 | 13.94 | 0.00 | 43.29 | 3.67 |
2103 | 5045 | 2.355756 | AGCAACGATCATGCATACAACC | 59.644 | 45.455 | 19.29 | 0.00 | 46.22 | 3.77 |
2104 | 5046 | 3.680642 | AGCAACGATCATGCATACAAC | 57.319 | 42.857 | 19.29 | 0.00 | 46.22 | 3.32 |
2105 | 5047 | 4.700268 | AAAGCAACGATCATGCATACAA | 57.300 | 36.364 | 19.29 | 0.00 | 46.22 | 2.41 |
2106 | 5048 | 7.671495 | ATATAAAGCAACGATCATGCATACA | 57.329 | 32.000 | 19.29 | 5.40 | 46.22 | 2.29 |
2124 | 5066 | 5.644636 | CCTTTCGCCCCGCTTTATATATAAA | 59.355 | 40.000 | 15.47 | 15.47 | 0.00 | 1.40 |
2125 | 5067 | 5.180271 | CCTTTCGCCCCGCTTTATATATAA | 58.820 | 41.667 | 0.81 | 0.81 | 0.00 | 0.98 |
2126 | 5068 | 4.761975 | CCTTTCGCCCCGCTTTATATATA | 58.238 | 43.478 | 0.00 | 0.00 | 0.00 | 0.86 |
2127 | 5069 | 3.606687 | CCTTTCGCCCCGCTTTATATAT | 58.393 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
2128 | 5070 | 2.872842 | GCCTTTCGCCCCGCTTTATATA | 60.873 | 50.000 | 0.00 | 0.00 | 0.00 | 0.86 |
2129 | 5071 | 1.892209 | CCTTTCGCCCCGCTTTATAT | 58.108 | 50.000 | 0.00 | 0.00 | 0.00 | 0.86 |
2130 | 5072 | 0.816421 | GCCTTTCGCCCCGCTTTATA | 60.816 | 55.000 | 0.00 | 0.00 | 0.00 | 0.98 |
2131 | 5073 | 2.119029 | GCCTTTCGCCCCGCTTTAT | 61.119 | 57.895 | 0.00 | 0.00 | 0.00 | 1.40 |
2132 | 5074 | 2.748647 | GCCTTTCGCCCCGCTTTA | 60.749 | 61.111 | 0.00 | 0.00 | 0.00 | 1.85 |
2133 | 5075 | 4.660938 | AGCCTTTCGCCCCGCTTT | 62.661 | 61.111 | 0.00 | 0.00 | 38.78 | 3.51 |
2134 | 5076 | 4.660938 | AAGCCTTTCGCCCCGCTT | 62.661 | 61.111 | 0.00 | 0.00 | 38.78 | 4.68 |
2135 | 5077 | 4.660938 | AAAGCCTTTCGCCCCGCT | 62.661 | 61.111 | 0.00 | 0.00 | 38.78 | 5.52 |
2136 | 5078 | 3.220999 | AAAAAGCCTTTCGCCCCGC | 62.221 | 57.895 | 0.00 | 0.00 | 38.78 | 6.13 |
2137 | 5079 | 1.080772 | GAAAAAGCCTTTCGCCCCG | 60.081 | 57.895 | 0.00 | 0.00 | 38.78 | 5.73 |
2138 | 5080 | 1.080772 | CGAAAAAGCCTTTCGCCCC | 60.081 | 57.895 | 15.72 | 0.00 | 43.52 | 5.80 |
2139 | 5081 | 1.080772 | CCGAAAAAGCCTTTCGCCC | 60.081 | 57.895 | 20.34 | 0.00 | 46.89 | 6.13 |
2140 | 5082 | 0.876399 | TACCGAAAAAGCCTTTCGCC | 59.124 | 50.000 | 20.34 | 0.00 | 46.89 | 5.54 |
2141 | 5083 | 2.031420 | ACTTACCGAAAAAGCCTTTCGC | 60.031 | 45.455 | 20.34 | 0.00 | 46.89 | 4.70 |
2143 | 5085 | 3.317149 | ACCACTTACCGAAAAAGCCTTTC | 59.683 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
2144 | 5086 | 3.293337 | ACCACTTACCGAAAAAGCCTTT | 58.707 | 40.909 | 0.00 | 0.00 | 0.00 | 3.11 |
2145 | 5087 | 2.882761 | GACCACTTACCGAAAAAGCCTT | 59.117 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
2146 | 5088 | 2.501261 | GACCACTTACCGAAAAAGCCT | 58.499 | 47.619 | 0.00 | 0.00 | 0.00 | 4.58 |
2147 | 5089 | 1.538512 | GGACCACTTACCGAAAAAGCC | 59.461 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
2148 | 5090 | 2.223745 | TGGACCACTTACCGAAAAAGC | 58.776 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
2149 | 5091 | 3.735591 | TCTGGACCACTTACCGAAAAAG | 58.264 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
2150 | 5092 | 3.842007 | TCTGGACCACTTACCGAAAAA | 57.158 | 42.857 | 0.00 | 0.00 | 0.00 | 1.94 |
2151 | 5093 | 3.135167 | AGTTCTGGACCACTTACCGAAAA | 59.865 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2152 | 5094 | 2.701951 | AGTTCTGGACCACTTACCGAAA | 59.298 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
2153 | 5095 | 2.322658 | AGTTCTGGACCACTTACCGAA | 58.677 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
2154 | 5096 | 2.005370 | AGTTCTGGACCACTTACCGA | 57.995 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2155 | 5097 | 3.947910 | TTAGTTCTGGACCACTTACCG | 57.052 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
2156 | 5098 | 3.939592 | GCATTAGTTCTGGACCACTTACC | 59.060 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
2157 | 5099 | 4.833390 | AGCATTAGTTCTGGACCACTTAC | 58.167 | 43.478 | 0.00 | 0.00 | 0.00 | 2.34 |
2158 | 5100 | 4.777896 | AGAGCATTAGTTCTGGACCACTTA | 59.222 | 41.667 | 0.00 | 0.00 | 33.72 | 2.24 |
2159 | 5101 | 3.584848 | AGAGCATTAGTTCTGGACCACTT | 59.415 | 43.478 | 0.00 | 0.00 | 33.72 | 3.16 |
2160 | 5102 | 3.055530 | CAGAGCATTAGTTCTGGACCACT | 60.056 | 47.826 | 0.00 | 0.00 | 45.92 | 4.00 |
2161 | 5103 | 3.265791 | CAGAGCATTAGTTCTGGACCAC | 58.734 | 50.000 | 0.00 | 0.00 | 45.92 | 4.16 |
2162 | 5104 | 3.616956 | CAGAGCATTAGTTCTGGACCA | 57.383 | 47.619 | 0.00 | 0.00 | 45.92 | 4.02 |
2168 | 5110 | 9.160496 | CTTATCTCAAAACAGAGCATTAGTTCT | 57.840 | 33.333 | 0.00 | 0.00 | 35.51 | 3.01 |
2169 | 5111 | 9.155975 | TCTTATCTCAAAACAGAGCATTAGTTC | 57.844 | 33.333 | 0.00 | 0.00 | 35.59 | 3.01 |
2170 | 5112 | 9.507329 | TTCTTATCTCAAAACAGAGCATTAGTT | 57.493 | 29.630 | 0.00 | 0.00 | 35.59 | 2.24 |
2171 | 5113 | 9.160496 | CTTCTTATCTCAAAACAGAGCATTAGT | 57.840 | 33.333 | 0.00 | 0.00 | 35.59 | 2.24 |
2172 | 5114 | 9.376075 | TCTTCTTATCTCAAAACAGAGCATTAG | 57.624 | 33.333 | 0.00 | 0.00 | 35.59 | 1.73 |
2173 | 5115 | 9.376075 | CTCTTCTTATCTCAAAACAGAGCATTA | 57.624 | 33.333 | 0.00 | 0.00 | 35.59 | 1.90 |
2174 | 5116 | 7.336427 | CCTCTTCTTATCTCAAAACAGAGCATT | 59.664 | 37.037 | 0.00 | 0.00 | 35.59 | 3.56 |
2175 | 5117 | 6.822676 | CCTCTTCTTATCTCAAAACAGAGCAT | 59.177 | 38.462 | 0.00 | 0.00 | 35.59 | 3.79 |
2176 | 5118 | 6.169094 | CCTCTTCTTATCTCAAAACAGAGCA | 58.831 | 40.000 | 0.00 | 0.00 | 35.59 | 4.26 |
2177 | 5119 | 5.584251 | CCCTCTTCTTATCTCAAAACAGAGC | 59.416 | 44.000 | 0.00 | 0.00 | 35.59 | 4.09 |
2178 | 5120 | 6.816140 | GTCCCTCTTCTTATCTCAAAACAGAG | 59.184 | 42.308 | 0.00 | 0.00 | 36.97 | 3.35 |
2179 | 5121 | 6.270000 | TGTCCCTCTTCTTATCTCAAAACAGA | 59.730 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2180 | 5122 | 6.467677 | TGTCCCTCTTCTTATCTCAAAACAG | 58.532 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2181 | 5123 | 6.270000 | TCTGTCCCTCTTCTTATCTCAAAACA | 59.730 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
2182 | 5124 | 6.702329 | TCTGTCCCTCTTCTTATCTCAAAAC | 58.298 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2183 | 5125 | 6.935240 | TCTGTCCCTCTTCTTATCTCAAAA | 57.065 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
2184 | 5126 | 7.502060 | AATCTGTCCCTCTTCTTATCTCAAA | 57.498 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2185 | 5127 | 8.609617 | TTAATCTGTCCCTCTTCTTATCTCAA | 57.390 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
2186 | 5128 | 8.789767 | ATTAATCTGTCCCTCTTCTTATCTCA | 57.210 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
2189 | 5131 | 9.796120 | CGATATTAATCTGTCCCTCTTCTTATC | 57.204 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
2190 | 5132 | 8.754080 | CCGATATTAATCTGTCCCTCTTCTTAT | 58.246 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
2191 | 5133 | 7.728981 | ACCGATATTAATCTGTCCCTCTTCTTA | 59.271 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
2192 | 5134 | 6.555360 | ACCGATATTAATCTGTCCCTCTTCTT | 59.445 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
2193 | 5135 | 6.015010 | CACCGATATTAATCTGTCCCTCTTCT | 60.015 | 42.308 | 0.00 | 0.00 | 28.10 | 2.85 |
2194 | 5136 | 6.159988 | CACCGATATTAATCTGTCCCTCTTC | 58.840 | 44.000 | 0.00 | 0.00 | 28.10 | 2.87 |
2195 | 5137 | 5.511545 | GCACCGATATTAATCTGTCCCTCTT | 60.512 | 44.000 | 0.00 | 0.00 | 28.10 | 2.85 |
2196 | 5138 | 4.021016 | GCACCGATATTAATCTGTCCCTCT | 60.021 | 45.833 | 0.00 | 0.00 | 28.10 | 3.69 |
2197 | 5139 | 4.021016 | AGCACCGATATTAATCTGTCCCTC | 60.021 | 45.833 | 0.00 | 0.00 | 28.10 | 4.30 |
2198 | 5140 | 3.904339 | AGCACCGATATTAATCTGTCCCT | 59.096 | 43.478 | 0.00 | 0.00 | 28.10 | 4.20 |
2199 | 5141 | 3.997021 | CAGCACCGATATTAATCTGTCCC | 59.003 | 47.826 | 0.00 | 0.00 | 28.10 | 4.46 |
2200 | 5142 | 3.997021 | CCAGCACCGATATTAATCTGTCC | 59.003 | 47.826 | 0.00 | 0.00 | 28.10 | 4.02 |
2201 | 5143 | 3.433615 | GCCAGCACCGATATTAATCTGTC | 59.566 | 47.826 | 0.00 | 0.00 | 28.10 | 3.51 |
2202 | 5144 | 3.181455 | TGCCAGCACCGATATTAATCTGT | 60.181 | 43.478 | 0.00 | 0.00 | 30.46 | 3.41 |
2203 | 5145 | 3.402110 | TGCCAGCACCGATATTAATCTG | 58.598 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2204 | 5146 | 3.769739 | TGCCAGCACCGATATTAATCT | 57.230 | 42.857 | 0.00 | 0.00 | 0.00 | 2.40 |
2205 | 5147 | 5.643777 | ACTTATGCCAGCACCGATATTAATC | 59.356 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2206 | 5148 | 5.560724 | ACTTATGCCAGCACCGATATTAAT | 58.439 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2207 | 5149 | 4.968259 | ACTTATGCCAGCACCGATATTAA | 58.032 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
2208 | 5150 | 4.617253 | ACTTATGCCAGCACCGATATTA | 57.383 | 40.909 | 0.00 | 0.00 | 0.00 | 0.98 |
2209 | 5151 | 3.492102 | ACTTATGCCAGCACCGATATT | 57.508 | 42.857 | 0.00 | 0.00 | 0.00 | 1.28 |
2210 | 5152 | 4.283467 | TCTTACTTATGCCAGCACCGATAT | 59.717 | 41.667 | 0.00 | 0.00 | 0.00 | 1.63 |
2211 | 5153 | 3.639561 | TCTTACTTATGCCAGCACCGATA | 59.360 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
2212 | 5154 | 2.434336 | TCTTACTTATGCCAGCACCGAT | 59.566 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
2213 | 5155 | 1.828595 | TCTTACTTATGCCAGCACCGA | 59.171 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
2214 | 5156 | 2.309528 | TCTTACTTATGCCAGCACCG | 57.690 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2215 | 5157 | 3.610911 | ACTTCTTACTTATGCCAGCACC | 58.389 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
2216 | 5158 | 4.938226 | AGAACTTCTTACTTATGCCAGCAC | 59.062 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
2217 | 5159 | 5.165961 | AGAACTTCTTACTTATGCCAGCA | 57.834 | 39.130 | 0.00 | 0.00 | 0.00 | 4.41 |
2218 | 5160 | 5.235401 | GCTAGAACTTCTTACTTATGCCAGC | 59.765 | 44.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2219 | 5161 | 6.341316 | TGCTAGAACTTCTTACTTATGCCAG | 58.659 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2220 | 5162 | 6.294361 | TGCTAGAACTTCTTACTTATGCCA | 57.706 | 37.500 | 0.00 | 0.00 | 0.00 | 4.92 |
2221 | 5163 | 7.611213 | TTTGCTAGAACTTCTTACTTATGCC | 57.389 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2222 | 5164 | 8.722394 | ACTTTTGCTAGAACTTCTTACTTATGC | 58.278 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
2225 | 5167 | 9.609346 | ACAACTTTTGCTAGAACTTCTTACTTA | 57.391 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2226 | 5168 | 8.507524 | ACAACTTTTGCTAGAACTTCTTACTT | 57.492 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
2227 | 5169 | 9.609346 | TTACAACTTTTGCTAGAACTTCTTACT | 57.391 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2230 | 5172 | 8.352942 | CCATTACAACTTTTGCTAGAACTTCTT | 58.647 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2231 | 5173 | 7.719633 | TCCATTACAACTTTTGCTAGAACTTCT | 59.280 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
2232 | 5174 | 7.871853 | TCCATTACAACTTTTGCTAGAACTTC | 58.128 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
2233 | 5175 | 7.817418 | TCCATTACAACTTTTGCTAGAACTT | 57.183 | 32.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2234 | 5176 | 7.817418 | TTCCATTACAACTTTTGCTAGAACT | 57.183 | 32.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2235 | 5177 | 8.865590 | TTTTCCATTACAACTTTTGCTAGAAC | 57.134 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
2236 | 5178 | 9.528018 | CTTTTTCCATTACAACTTTTGCTAGAA | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 2.10 |
2237 | 5179 | 8.691797 | ACTTTTTCCATTACAACTTTTGCTAGA | 58.308 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
2238 | 5180 | 8.871686 | ACTTTTTCCATTACAACTTTTGCTAG | 57.128 | 30.769 | 0.00 | 0.00 | 0.00 | 3.42 |
2246 | 5188 | 9.802039 | TGACCTTATACTTTTTCCATTACAACT | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
2248 | 5190 | 9.238368 | CCTGACCTTATACTTTTTCCATTACAA | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2249 | 5191 | 8.387813 | ACCTGACCTTATACTTTTTCCATTACA | 58.612 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2250 | 5192 | 8.803397 | ACCTGACCTTATACTTTTTCCATTAC | 57.197 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
2251 | 5193 | 8.832735 | AGACCTGACCTTATACTTTTTCCATTA | 58.167 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
2252 | 5194 | 7.699878 | AGACCTGACCTTATACTTTTTCCATT | 58.300 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2253 | 5195 | 7.182930 | AGAGACCTGACCTTATACTTTTTCCAT | 59.817 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
2254 | 5196 | 6.500751 | AGAGACCTGACCTTATACTTTTTCCA | 59.499 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
2255 | 5197 | 6.948589 | AGAGACCTGACCTTATACTTTTTCC | 58.051 | 40.000 | 0.00 | 0.00 | 0.00 | 3.13 |
2256 | 5198 | 7.707464 | GCTAGAGACCTGACCTTATACTTTTTC | 59.293 | 40.741 | 0.00 | 0.00 | 0.00 | 2.29 |
2257 | 5199 | 7.180408 | TGCTAGAGACCTGACCTTATACTTTTT | 59.820 | 37.037 | 0.00 | 0.00 | 0.00 | 1.94 |
2258 | 5200 | 6.668283 | TGCTAGAGACCTGACCTTATACTTTT | 59.332 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
2259 | 5201 | 6.195700 | TGCTAGAGACCTGACCTTATACTTT | 58.804 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2260 | 5202 | 5.767670 | TGCTAGAGACCTGACCTTATACTT | 58.232 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2261 | 5203 | 5.390087 | TGCTAGAGACCTGACCTTATACT | 57.610 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
2262 | 5204 | 6.658188 | ATTGCTAGAGACCTGACCTTATAC | 57.342 | 41.667 | 0.00 | 0.00 | 0.00 | 1.47 |
2263 | 5205 | 7.344612 | TGAAATTGCTAGAGACCTGACCTTATA | 59.655 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
2264 | 5206 | 6.156949 | TGAAATTGCTAGAGACCTGACCTTAT | 59.843 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
2265 | 5207 | 5.483937 | TGAAATTGCTAGAGACCTGACCTTA | 59.516 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2266 | 5208 | 4.287067 | TGAAATTGCTAGAGACCTGACCTT | 59.713 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
2267 | 5209 | 3.840666 | TGAAATTGCTAGAGACCTGACCT | 59.159 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2268 | 5210 | 4.207891 | TGAAATTGCTAGAGACCTGACC | 57.792 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
2269 | 5211 | 4.034975 | GCATGAAATTGCTAGAGACCTGAC | 59.965 | 45.833 | 0.00 | 0.00 | 39.57 | 3.51 |
2270 | 5212 | 4.194640 | GCATGAAATTGCTAGAGACCTGA | 58.805 | 43.478 | 0.00 | 0.00 | 39.57 | 3.86 |
2271 | 5213 | 4.548991 | GCATGAAATTGCTAGAGACCTG | 57.451 | 45.455 | 0.00 | 0.00 | 39.57 | 4.00 |
2281 | 5223 | 7.745015 | ACAAATATTGTCAAGCATGAAATTGC | 58.255 | 30.769 | 0.00 | 0.00 | 40.56 | 3.56 |
2283 | 5225 | 9.926158 | TGTACAAATATTGTCAAGCATGAAATT | 57.074 | 25.926 | 0.00 | 0.00 | 44.12 | 1.82 |
2284 | 5226 | 9.357652 | GTGTACAAATATTGTCAAGCATGAAAT | 57.642 | 29.630 | 0.00 | 0.00 | 44.12 | 2.17 |
2285 | 5227 | 8.355913 | TGTGTACAAATATTGTCAAGCATGAAA | 58.644 | 29.630 | 0.00 | 0.00 | 44.12 | 2.69 |
2286 | 5228 | 7.807433 | GTGTGTACAAATATTGTCAAGCATGAA | 59.193 | 33.333 | 0.00 | 0.00 | 44.12 | 2.57 |
2287 | 5229 | 7.040823 | TGTGTGTACAAATATTGTCAAGCATGA | 60.041 | 33.333 | 0.00 | 0.00 | 44.12 | 3.07 |
2288 | 5230 | 7.060979 | GTGTGTGTACAAATATTGTCAAGCATG | 59.939 | 37.037 | 0.00 | 0.00 | 44.12 | 4.06 |
2289 | 5231 | 7.083858 | GTGTGTGTACAAATATTGTCAAGCAT | 58.916 | 34.615 | 0.00 | 0.00 | 44.12 | 3.79 |
2290 | 5232 | 6.434596 | GTGTGTGTACAAATATTGTCAAGCA | 58.565 | 36.000 | 0.00 | 0.00 | 44.12 | 3.91 |
2291 | 5233 | 5.563751 | CGTGTGTGTACAAATATTGTCAAGC | 59.436 | 40.000 | 0.00 | 0.00 | 44.12 | 4.01 |
2292 | 5234 | 5.563751 | GCGTGTGTGTACAAATATTGTCAAG | 59.436 | 40.000 | 0.00 | 0.00 | 44.12 | 3.02 |
2293 | 5235 | 5.444983 | GCGTGTGTGTACAAATATTGTCAA | 58.555 | 37.500 | 0.00 | 0.00 | 44.12 | 3.18 |
2294 | 5236 | 4.376514 | CGCGTGTGTGTACAAATATTGTCA | 60.377 | 41.667 | 0.00 | 0.00 | 44.12 | 3.58 |
2295 | 5237 | 4.079028 | CGCGTGTGTGTACAAATATTGTC | 58.921 | 43.478 | 0.00 | 0.00 | 44.12 | 3.18 |
2297 | 5239 | 2.837878 | GCGCGTGTGTGTACAAATATTG | 59.162 | 45.455 | 8.43 | 0.00 | 38.82 | 1.90 |
2298 | 5240 | 2.473212 | CGCGCGTGTGTGTACAAATATT | 60.473 | 45.455 | 24.19 | 0.00 | 38.82 | 1.28 |
2299 | 5241 | 1.059979 | CGCGCGTGTGTGTACAAATAT | 59.940 | 47.619 | 24.19 | 0.00 | 38.82 | 1.28 |
2300 | 5242 | 0.435388 | CGCGCGTGTGTGTACAAATA | 59.565 | 50.000 | 24.19 | 0.00 | 38.82 | 1.40 |
2301 | 5243 | 1.203065 | CGCGCGTGTGTGTACAAAT | 59.797 | 52.632 | 24.19 | 0.00 | 38.82 | 2.32 |
2302 | 5244 | 2.165940 | ACGCGCGTGTGTGTACAAA | 61.166 | 52.632 | 37.37 | 0.00 | 38.82 | 2.83 |
2303 | 5245 | 2.582772 | ACGCGCGTGTGTGTACAA | 60.583 | 55.556 | 37.37 | 0.00 | 38.82 | 2.41 |
2313 | 5255 | 0.100682 | ATCTCATACTTCACGCGCGT | 59.899 | 50.000 | 32.73 | 32.73 | 0.00 | 6.01 |
2314 | 5256 | 0.772926 | GATCTCATACTTCACGCGCG | 59.227 | 55.000 | 30.96 | 30.96 | 0.00 | 6.86 |
2315 | 5257 | 0.772926 | CGATCTCATACTTCACGCGC | 59.227 | 55.000 | 5.73 | 0.00 | 0.00 | 6.86 |
2316 | 5258 | 2.106750 | ACGATCTCATACTTCACGCG | 57.893 | 50.000 | 3.53 | 3.53 | 0.00 | 6.01 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.