Multiple sequence alignment - TraesCS1D01G312900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G312900 chr1D 100.000 2381 0 0 1 2381 408533836 408536216 0.000000e+00 4397.0
1 TraesCS1D01G312900 chr1D 88.411 906 85 10 1007 1902 408631294 408632189 0.000000e+00 1074.0
2 TraesCS1D01G312900 chr1D 92.308 676 47 4 751 1421 408557189 408557864 0.000000e+00 955.0
3 TraesCS1D01G312900 chr1D 81.457 604 91 12 912 1509 408711833 408712421 2.140000e-130 475.0
4 TraesCS1D01G312900 chr1D 82.900 462 49 9 1918 2371 408567375 408567814 2.870000e-104 388.0
5 TraesCS1D01G312900 chr1D 83.007 459 48 12 1918 2371 408632693 408633126 2.870000e-104 388.0
6 TraesCS1D01G312900 chr1D 88.994 318 26 5 1413 1722 408566160 408566476 3.710000e-103 385.0
7 TraesCS1D01G312900 chr1D 83.693 417 54 9 1969 2379 408713272 408713680 4.800000e-102 381.0
8 TraesCS1D01G312900 chr1D 80.233 516 69 18 728 1230 408769643 408770138 8.090000e-95 357.0
9 TraesCS1D01G312900 chr1D 91.549 213 15 3 463 674 408711556 408711766 8.330000e-75 291.0
10 TraesCS1D01G312900 chr1D 78.571 350 63 7 2036 2379 408828299 408828642 1.110000e-53 220.0
11 TraesCS1D01G312900 chr1D 83.260 227 31 5 489 715 408816503 408816722 4.010000e-48 202.0
12 TraesCS1D01G312900 chr1D 88.820 161 18 0 559 719 408556943 408557103 5.190000e-47 198.0
13 TraesCS1D01G312900 chr1D 100.000 30 0 0 1538 1567 408570950 408570979 3.310000e-04 56.5
14 TraesCS1D01G312900 chr1A 90.934 1092 61 15 734 1810 504632154 504633222 0.000000e+00 1434.0
15 TraesCS1D01G312900 chr1A 91.854 712 36 8 35 726 504631393 504632102 0.000000e+00 974.0
16 TraesCS1D01G312900 chr1A 81.618 544 57 15 1850 2380 504641248 504641761 6.130000e-111 411.0
17 TraesCS1D01G312900 chr1A 100.000 39 0 0 1 39 504631343 504631381 3.280000e-09 73.1
18 TraesCS1D01G312900 chr1B 92.577 943 60 7 724 1657 549890949 549891890 0.000000e+00 1345.0
19 TraesCS1D01G312900 chr1B 85.356 717 63 25 37 720 549890201 549890908 0.000000e+00 704.0
20 TraesCS1D01G312900 chr1B 86.742 445 56 3 1145 1589 549976915 549977356 2.130000e-135 492.0
21 TraesCS1D01G312900 chr1B 89.372 207 20 1 2175 2381 549891901 549892105 2.350000e-65 259.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G312900 chr1D 408533836 408536216 2380 False 4397.000000 4397 100.000000 1 2381 1 chr1D.!!$F1 2380
1 TraesCS1D01G312900 chr1D 408631294 408633126 1832 False 731.000000 1074 85.709000 1007 2371 2 chr1D.!!$F7 1364
2 TraesCS1D01G312900 chr1D 408556943 408557864 921 False 576.500000 955 90.564000 559 1421 2 chr1D.!!$F5 862
3 TraesCS1D01G312900 chr1D 408711556 408713680 2124 False 382.333333 475 85.566333 463 2379 3 chr1D.!!$F8 1916
4 TraesCS1D01G312900 chr1D 408566160 408570979 4819 False 276.500000 388 90.631333 1413 2371 3 chr1D.!!$F6 958
5 TraesCS1D01G312900 chr1A 504631343 504633222 1879 False 827.033333 1434 94.262667 1 1810 3 chr1A.!!$F2 1809
6 TraesCS1D01G312900 chr1A 504641248 504641761 513 False 411.000000 411 81.618000 1850 2380 1 chr1A.!!$F1 530
7 TraesCS1D01G312900 chr1B 549890201 549892105 1904 False 769.333333 1345 89.101667 37 2381 3 chr1B.!!$F2 2344

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 205 0.038455 ACCCACGAGAGCACTAGACT 59.962 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 2019 0.182537 CCCAGAACAGAACACCCACA 59.817 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 205 0.038455 ACCCACGAGAGCACTAGACT 59.962 55.000 0.00 0.00 0.00 3.24
189 214 3.875134 GAGAGCACTAGACTAGGAGTGAC 59.125 52.174 20.00 14.08 44.88 3.67
255 300 2.056906 AAAGGCTGCGTGGAAGGAGT 62.057 55.000 0.00 0.00 31.83 3.85
257 302 2.743928 GCTGCGTGGAAGGAGTGG 60.744 66.667 0.00 0.00 31.83 4.00
346 408 1.822371 GGTTTCTTCCGCTCTCTCTCT 59.178 52.381 0.00 0.00 0.00 3.10
347 409 2.159296 GGTTTCTTCCGCTCTCTCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
363 425 6.095300 TCTCTCTCTCTGCTTGATCTGTTTAG 59.905 42.308 0.00 0.00 0.00 1.85
382 444 2.266055 CCCCGTCTGGTCTTCTGC 59.734 66.667 0.00 0.00 0.00 4.26
401 479 4.038042 TCTGCTTCTTCGTATGGATCGATT 59.962 41.667 0.00 0.00 37.18 3.34
465 543 4.353737 CAGTCAGTGTGATTTGGTTTGTG 58.646 43.478 0.00 0.00 0.00 3.33
494 572 0.389391 GGGAATCGATCGAGCAAGGA 59.611 55.000 23.84 0.00 0.00 3.36
571 650 9.578439 GATGAAGAAAAGGGAGTCAAATTAATG 57.422 33.333 0.00 0.00 0.00 1.90
617 696 3.603965 TTGGTGAAAGGTGTAATGGGT 57.396 42.857 0.00 0.00 0.00 4.51
619 698 4.023726 TGGTGAAAGGTGTAATGGGTAC 57.976 45.455 0.00 0.00 0.00 3.34
657 736 4.567959 TCTGTAGCATCGTGATGTTTGATG 59.432 41.667 11.23 0.00 41.84 3.07
669 748 6.512578 CGTGATGTTTGATGGTTTCTGTACAA 60.513 38.462 0.00 0.00 0.00 2.41
720 799 4.237724 CGTTTCTGACTGAACTGAGCATA 58.762 43.478 0.00 0.00 33.88 3.14
721 800 4.867047 CGTTTCTGACTGAACTGAGCATAT 59.133 41.667 0.00 0.00 33.88 1.78
722 801 5.005203 CGTTTCTGACTGAACTGAGCATATC 59.995 44.000 0.00 0.00 33.88 1.63
739 855 6.727824 GCATATCGCTGGAGTAATTAACAT 57.272 37.500 0.00 0.00 37.77 2.71
741 857 7.017645 GCATATCGCTGGAGTAATTAACATTG 58.982 38.462 0.00 0.00 37.77 2.82
742 858 7.095229 GCATATCGCTGGAGTAATTAACATTGA 60.095 37.037 0.00 0.00 37.77 2.57
743 859 8.939929 CATATCGCTGGAGTAATTAACATTGAT 58.060 33.333 0.00 0.00 0.00 2.57
776 922 4.104102 TGGATGGGTGTTATACCTTCCATC 59.896 45.833 15.19 11.25 46.98 3.51
793 939 2.012673 CATCAACCCTGCAGTAGCTTC 58.987 52.381 13.81 0.00 42.74 3.86
794 940 1.352083 TCAACCCTGCAGTAGCTTCT 58.648 50.000 13.81 0.00 42.74 2.85
813 959 3.214328 TCTCCTGCAGTTTCCTTTGTTC 58.786 45.455 13.81 0.00 0.00 3.18
955 1116 8.892723 CATGATGTTACTGTGTATAATGTGGTT 58.107 33.333 0.00 0.00 0.00 3.67
982 1143 5.624159 TGGCATGGAGTTTTCATATCTAGG 58.376 41.667 0.00 0.00 0.00 3.02
984 1145 4.457257 GCATGGAGTTTTCATATCTAGGGC 59.543 45.833 0.00 0.00 0.00 5.19
1075 1239 1.186200 CTTGACAGACGATCAGGGGA 58.814 55.000 0.00 0.00 0.00 4.81
1131 1295 2.029020 TCCGACTTCAGTGAATGGTCAG 60.029 50.000 19.56 11.90 33.27 3.51
1133 1297 3.249091 CGACTTCAGTGAATGGTCAGAG 58.751 50.000 19.56 4.79 33.27 3.35
1401 1565 0.036732 CCTGCCTCCTTGTGCAACTA 59.963 55.000 0.00 0.00 36.98 2.24
1402 1566 1.545428 CCTGCCTCCTTGTGCAACTAA 60.545 52.381 0.00 0.00 36.98 2.24
1568 1737 4.471904 TTTATTTGGTGTTGTGTTGCCA 57.528 36.364 0.00 0.00 0.00 4.92
1573 1744 1.032014 GGTGTTGTGTTGCCAGATGT 58.968 50.000 0.00 0.00 0.00 3.06
1581 1752 4.709250 TGTGTTGCCAGATGTTTACAGTA 58.291 39.130 0.00 0.00 0.00 2.74
1613 1784 1.873591 CCCTTTGGTCAGAACTCAACG 59.126 52.381 0.00 0.00 0.00 4.10
1678 1917 6.670695 AAAGAACCAGTGCAATCCTTATTT 57.329 33.333 0.00 0.00 0.00 1.40
1686 1925 7.561356 ACCAGTGCAATCCTTATTTAAATAGCT 59.439 33.333 7.91 0.00 0.00 3.32
1709 1948 4.508861 TGCAAAAGCTTCATTGAAGAAAGC 59.491 37.500 26.72 20.46 41.71 3.51
1741 1980 7.576098 GCAAATATTTACGAGAAACCCCAAAGA 60.576 37.037 0.00 0.00 0.00 2.52
1768 2019 4.141620 ACCACTCTCACAAGATCAGTGTTT 60.142 41.667 15.27 0.00 38.16 2.83
1769 2020 4.212847 CCACTCTCACAAGATCAGTGTTTG 59.787 45.833 15.27 4.54 38.16 2.93
1781 2032 2.091541 CAGTGTTTGTGGGTGTTCTGT 58.908 47.619 0.00 0.00 0.00 3.41
1785 2036 2.752354 TGTTTGTGGGTGTTCTGTTCTG 59.248 45.455 0.00 0.00 0.00 3.02
1814 2065 3.334583 CTAACAGCCAAGTTAGCCAGA 57.665 47.619 7.97 0.00 42.96 3.86
1826 2077 4.880164 AGTTAGCCAGATGGGAAGTACTA 58.120 43.478 0.00 0.00 40.01 1.82
1837 2088 5.531122 TGGGAAGTACTATTCTCATTCCG 57.469 43.478 0.00 0.00 34.73 4.30
1879 2134 3.307269 CCAGGCACTTCTGATCTTCTTCA 60.307 47.826 0.00 0.00 34.60 3.02
1884 2139 4.084118 GCACTTCTGATCTTCTTCACACAC 60.084 45.833 0.00 0.00 0.00 3.82
1887 2142 3.657634 TCTGATCTTCTTCACACACAGC 58.342 45.455 0.00 0.00 0.00 4.40
1895 2150 2.030628 TCTTCACACACAGCATGCATTG 60.031 45.455 21.98 17.99 42.53 2.82
1916 3254 7.437267 GCATTGCTTGACTTAAAATGAGCATAT 59.563 33.333 0.16 0.00 39.56 1.78
1980 3454 3.009473 AGCTTTGCCTATGTCAGAGGAAA 59.991 43.478 17.94 10.47 35.99 3.13
1991 3465 2.160417 GTCAGAGGAAATTTGTCAGCCG 59.840 50.000 0.00 0.00 0.00 5.52
1998 3472 3.004315 GGAAATTTGTCAGCCGTTGAAGA 59.996 43.478 0.00 0.00 37.61 2.87
2003 3477 2.809446 TGTCAGCCGTTGAAGATATCG 58.191 47.619 0.00 0.00 37.61 2.92
2009 3483 3.630769 AGCCGTTGAAGATATCGTCACTA 59.369 43.478 19.24 5.05 34.26 2.74
2016 3490 5.306394 TGAAGATATCGTCACTAGATCGGT 58.694 41.667 16.17 0.00 29.71 4.69
2021 3497 7.104290 AGATATCGTCACTAGATCGGTTCATA 58.896 38.462 0.00 0.00 0.00 2.15
2022 3498 4.808077 TCGTCACTAGATCGGTTCATAC 57.192 45.455 0.00 0.00 0.00 2.39
2090 3566 5.788450 CCTACCATTGATCATAGTCCTCAC 58.212 45.833 0.00 0.00 0.00 3.51
2092 3568 5.901413 ACCATTGATCATAGTCCTCACAT 57.099 39.130 0.00 0.00 0.00 3.21
2099 3575 5.305386 TGATCATAGTCCTCACATACCAAGG 59.695 44.000 0.00 0.00 0.00 3.61
2103 3579 6.844388 TCATAGTCCTCACATACCAAGGTAAT 59.156 38.462 2.62 0.00 33.99 1.89
2136 3613 5.827267 TCTATGCATTTAGTGGCAGCAATAA 59.173 36.000 3.54 0.00 44.24 1.40
2139 3616 4.107622 GCATTTAGTGGCAGCAATAACAG 58.892 43.478 0.00 0.00 0.00 3.16
2201 3683 7.928706 GTGTTCACCTTATATGCTCACTAGAAT 59.071 37.037 0.00 0.00 0.00 2.40
2204 3686 9.982651 TTCACCTTATATGCTCACTAGAATTAC 57.017 33.333 0.00 0.00 0.00 1.89
2272 3754 8.896744 CATGTGTTATTGATTTCACTACCTCAT 58.103 33.333 0.00 0.00 0.00 2.90
2280 3762 4.574674 TTTCACTACCTCATCAGCCATT 57.425 40.909 0.00 0.00 0.00 3.16
2286 3768 1.019673 CCTCATCAGCCATTTGTCCG 58.980 55.000 0.00 0.00 0.00 4.79
2296 3782 4.798387 CAGCCATTTGTCCGCTTATTTAAC 59.202 41.667 0.00 0.00 0.00 2.01
2309 3795 6.201044 CCGCTTATTTAACTCCATGAGTACAG 59.799 42.308 0.00 0.00 42.59 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 205 1.379977 CTCGGCCAGGTCACTCCTA 60.380 63.158 2.24 0.00 46.24 2.94
346 408 2.356125 GGGGCTAAACAGATCAAGCAGA 60.356 50.000 0.00 0.00 36.68 4.26
347 409 2.019984 GGGGCTAAACAGATCAAGCAG 58.980 52.381 0.00 0.00 36.68 4.24
363 425 3.003763 AGAAGACCAGACGGGGGC 61.004 66.667 0.00 0.00 42.91 5.80
382 444 3.362237 GCGAATCGATCCATACGAAGAAG 59.638 47.826 6.91 0.00 42.80 2.85
465 543 2.325393 ATCGATTCCCCGGAGCAACC 62.325 60.000 0.73 0.00 0.00 3.77
494 572 0.036294 GACCTGCGCCTCCTACTTTT 60.036 55.000 4.18 0.00 0.00 2.27
571 650 2.159282 TGCTACTTCTACTAGCGCCAAC 60.159 50.000 2.29 0.00 39.70 3.77
617 696 8.706322 TGCTACAGATCTCACCTTATAATGTA 57.294 34.615 0.00 0.00 0.00 2.29
619 698 7.487509 CGATGCTACAGATCTCACCTTATAATG 59.512 40.741 0.00 0.00 0.00 1.90
657 736 1.670326 CGCGCTTTTGTACAGAAACC 58.330 50.000 5.56 0.00 0.00 3.27
669 748 2.770587 CTTCTTTGCTCGCGCGCTTT 62.771 55.000 30.48 0.00 39.65 3.51
720 799 8.150945 AGTATCAATGTTAATTACTCCAGCGAT 58.849 33.333 0.00 0.00 0.00 4.58
721 800 7.438160 CAGTATCAATGTTAATTACTCCAGCGA 59.562 37.037 0.00 0.00 0.00 4.93
722 801 7.224753 ACAGTATCAATGTTAATTACTCCAGCG 59.775 37.037 0.00 0.00 0.00 5.18
764 905 3.119319 TGCAGGGTTGATGGAAGGTATA 58.881 45.455 0.00 0.00 0.00 1.47
768 909 0.038744 ACTGCAGGGTTGATGGAAGG 59.961 55.000 19.93 0.00 0.00 3.46
769 910 2.636830 CTACTGCAGGGTTGATGGAAG 58.363 52.381 19.93 0.00 0.00 3.46
770 911 1.340017 GCTACTGCAGGGTTGATGGAA 60.340 52.381 19.93 0.00 39.41 3.53
771 912 0.253044 GCTACTGCAGGGTTGATGGA 59.747 55.000 19.93 0.00 39.41 3.41
776 922 1.677217 GGAGAAGCTACTGCAGGGTTG 60.677 57.143 19.93 5.93 42.74 3.77
780 926 3.756739 CAGGAGAAGCTACTGCAGG 57.243 57.895 19.93 1.57 35.50 4.85
793 939 2.294512 GGAACAAAGGAAACTGCAGGAG 59.705 50.000 19.93 0.00 42.68 3.69
794 940 2.306847 GGAACAAAGGAAACTGCAGGA 58.693 47.619 19.93 0.00 42.68 3.86
831 977 2.422093 CCTCCTCCTTGGCAAGTTATCC 60.422 54.545 24.57 0.00 35.26 2.59
955 1116 6.189859 AGATATGAAAACTCCATGCCAAGAA 58.810 36.000 0.00 0.00 0.00 2.52
982 1143 1.067142 CATGCCTGCAATGATATGGCC 60.067 52.381 8.26 0.00 42.62 5.36
984 1145 2.521126 TCCATGCCTGCAATGATATGG 58.479 47.619 0.00 0.00 37.11 2.74
1075 1239 2.281070 CGCAGTGTGCTTCAGGGT 60.281 61.111 0.00 0.00 42.25 4.34
1131 1295 7.170658 GCTTCCATGTTCATATCTACAGAACTC 59.829 40.741 0.00 0.00 41.56 3.01
1133 1297 6.989169 AGCTTCCATGTTCATATCTACAGAAC 59.011 38.462 0.00 0.00 41.42 3.01
1387 1551 7.615582 TCTGAAATATTAGTTGCACAAGGAG 57.384 36.000 0.00 0.00 0.00 3.69
1401 1565 5.858581 GCGTGCTTTGTCTTTCTGAAATATT 59.141 36.000 2.88 0.00 0.00 1.28
1402 1566 5.393962 GCGTGCTTTGTCTTTCTGAAATAT 58.606 37.500 2.88 0.00 0.00 1.28
1581 1752 6.969043 TCTGACCAAAGGGATAACAACATAT 58.031 36.000 0.00 0.00 38.05 1.78
1613 1784 3.449377 TCCCCTGTTCCTGAAAACAAAAC 59.551 43.478 0.00 0.00 38.60 2.43
1705 1944 5.933790 TCGTAAATATTTGCAACTCGCTTT 58.066 33.333 15.33 0.00 43.06 3.51
1709 1948 6.464834 GGTTTCTCGTAAATATTTGCAACTCG 59.535 38.462 15.33 8.48 0.00 4.18
1725 1964 3.495629 GGTACTTCTTTGGGGTTTCTCGT 60.496 47.826 0.00 0.00 0.00 4.18
1741 1980 4.835615 ACTGATCTTGTGAGAGTGGTACTT 59.164 41.667 0.00 0.00 34.85 2.24
1768 2019 0.182537 CCCAGAACAGAACACCCACA 59.817 55.000 0.00 0.00 0.00 4.17
1769 2020 1.172812 GCCCAGAACAGAACACCCAC 61.173 60.000 0.00 0.00 0.00 4.61
1781 2032 0.615331 CTGTTAGCCAGAGCCCAGAA 59.385 55.000 0.00 0.00 44.49 3.02
1800 2051 0.255890 TCCCATCTGGCTAACTTGGC 59.744 55.000 0.00 0.00 0.00 4.52
1810 2061 6.678568 ATGAGAATAGTACTTCCCATCTGG 57.321 41.667 0.00 0.00 0.00 3.86
1811 2062 7.158021 GGAATGAGAATAGTACTTCCCATCTG 58.842 42.308 0.00 0.00 0.00 2.90
1814 2065 5.602978 ACGGAATGAGAATAGTACTTCCCAT 59.397 40.000 0.00 0.00 30.63 4.00
1826 2077 4.019321 TCAAGGGAGAAACGGAATGAGAAT 60.019 41.667 0.00 0.00 0.00 2.40
1837 2088 1.531578 GTGCTCGTTCAAGGGAGAAAC 59.468 52.381 0.00 0.00 31.90 2.78
1887 2142 6.455113 GCTCATTTTAAGTCAAGCAATGCATG 60.455 38.462 8.35 5.96 0.00 4.06
1895 2150 7.253422 ACACATATGCTCATTTTAAGTCAAGC 58.747 34.615 1.58 0.00 0.00 4.01
1898 2153 7.920160 TGACACATATGCTCATTTTAAGTCA 57.080 32.000 1.58 0.00 0.00 3.41
1902 2157 7.041848 CCGAGATGACACATATGCTCATTTTAA 60.042 37.037 14.65 0.00 31.11 1.52
1903 2158 6.424812 CCGAGATGACACATATGCTCATTTTA 59.575 38.462 14.65 0.00 31.11 1.52
1904 2159 5.237996 CCGAGATGACACATATGCTCATTTT 59.762 40.000 14.65 8.72 31.11 1.82
1916 3254 1.256812 TGAAGAGCCGAGATGACACA 58.743 50.000 0.00 0.00 0.00 3.72
1980 3454 4.271049 CGATATCTTCAACGGCTGACAAAT 59.729 41.667 0.00 0.00 32.21 2.32
1991 3465 6.081049 CCGATCTAGTGACGATATCTTCAAC 58.919 44.000 13.03 8.16 0.00 3.18
1998 3472 6.653740 TGTATGAACCGATCTAGTGACGATAT 59.346 38.462 0.00 0.00 0.00 1.63
2003 3477 5.035443 GTGTGTATGAACCGATCTAGTGAC 58.965 45.833 0.00 0.00 0.00 3.67
2009 3483 3.258372 AGTGTGTGTGTATGAACCGATCT 59.742 43.478 0.00 0.00 0.00 2.75
2016 3490 5.276461 AGTTGAGAGTGTGTGTGTATGAA 57.724 39.130 0.00 0.00 0.00 2.57
2021 3497 3.610040 TCAAGTTGAGAGTGTGTGTGT 57.390 42.857 0.08 0.00 0.00 3.72
2022 3498 3.935203 AGTTCAAGTTGAGAGTGTGTGTG 59.065 43.478 5.56 0.00 0.00 3.82
2090 3566 7.125792 AGAGAAGTGGTATTACCTTGGTATG 57.874 40.000 13.90 0.00 39.58 2.39
2092 3568 7.201974 GCATAGAGAAGTGGTATTACCTTGGTA 60.202 40.741 13.90 0.00 39.58 3.25
2099 3575 9.765795 ACTAAATGCATAGAGAAGTGGTATTAC 57.234 33.333 13.31 0.00 0.00 1.89
2103 3579 6.582636 CCACTAAATGCATAGAGAAGTGGTA 58.417 40.000 24.02 0.55 44.76 3.25
2136 3613 2.158475 TGAGGTTGCCCATCTTTTCTGT 60.158 45.455 0.00 0.00 0.00 3.41
2139 3616 2.238521 TGTGAGGTTGCCCATCTTTTC 58.761 47.619 0.00 0.00 0.00 2.29
2156 3633 1.608590 ACTCCTCACCGCAAAAATGTG 59.391 47.619 0.00 0.00 0.00 3.21
2172 3649 4.811557 GTGAGCATATAAGGTGAACACTCC 59.188 45.833 4.96 0.00 0.00 3.85
2201 3683 4.021807 TCACTCATTTGCACCTCTACGTAA 60.022 41.667 0.00 0.00 0.00 3.18
2204 3686 2.959516 TCACTCATTTGCACCTCTACG 58.040 47.619 0.00 0.00 0.00 3.51
2272 3754 2.418368 ATAAGCGGACAAATGGCTGA 57.582 45.000 0.00 0.00 37.06 4.26
2280 3762 5.492895 TCATGGAGTTAAATAAGCGGACAA 58.507 37.500 0.00 0.00 0.00 3.18
2286 3768 8.391106 CAACTGTACTCATGGAGTTAAATAAGC 58.609 37.037 3.98 0.00 40.28 3.09
2296 3782 7.043961 TCTTATAGCAACTGTACTCATGGAG 57.956 40.000 0.00 0.00 35.52 3.86
2347 3833 3.037431 GCACCATGCTAGACATCTAGG 57.963 52.381 15.98 4.62 44.63 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.