Multiple sequence alignment - TraesCS1D01G312800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G312800 chr1D 100.000 5549 0 0 1 5549 408525466 408531014 0.000000e+00 10248.0
1 TraesCS1D01G312800 chr1A 92.504 2388 119 24 2448 4796 504614332 504616698 0.000000e+00 3363.0
2 TraesCS1D01G312800 chr1A 89.623 2390 136 51 48 2347 504611839 504614206 0.000000e+00 2937.0
3 TraesCS1D01G312800 chr1A 86.628 344 11 7 4860 5185 504616819 504617145 1.140000e-91 348.0
4 TraesCS1D01G312800 chr1A 93.458 107 4 3 5182 5286 584082812 584082917 7.440000e-34 156.0
5 TraesCS1D01G312800 chr1A 88.430 121 8 5 5181 5299 555691350 555691466 2.080000e-29 141.0
6 TraesCS1D01G312800 chr1A 91.045 67 4 2 5405 5471 504617427 504617491 7.660000e-14 89.8
7 TraesCS1D01G312800 chr1A 93.333 60 0 2 4 59 504610954 504611013 9.900000e-13 86.1
8 TraesCS1D01G312800 chr1B 93.524 2131 108 22 2726 4845 549792695 549794806 0.000000e+00 3144.0
9 TraesCS1D01G312800 chr1B 89.467 1652 96 36 18 1608 549789965 549791599 0.000000e+00 2015.0
10 TraesCS1D01G312800 chr1B 91.142 1016 60 21 1656 2666 549791703 549792693 0.000000e+00 1351.0
11 TraesCS1D01G312800 chr1B 93.548 186 7 1 4660 4845 549800845 549801025 7.080000e-69 272.0
12 TraesCS1D01G312800 chr1B 90.566 53 3 2 1 53 549789920 549789970 9.970000e-08 69.4
13 TraesCS1D01G312800 chr3B 79.896 965 154 25 3575 4531 572372398 572371466 0.000000e+00 671.0
14 TraesCS1D01G312800 chr3B 77.733 247 37 13 4214 4457 770952896 770952665 9.700000e-28 135.0
15 TraesCS1D01G312800 chr3B 75.166 302 56 14 4199 4495 771558398 771558111 2.100000e-24 124.0
16 TraesCS1D01G312800 chr3D 79.793 965 155 25 3575 4531 437027061 437026129 0.000000e+00 665.0
17 TraesCS1D01G312800 chr3D 80.162 247 31 13 4214 4457 577657350 577657119 9.560000e-38 169.0
18 TraesCS1D01G312800 chr3D 80.162 247 31 13 4214 4457 578053431 578053662 9.560000e-38 169.0
19 TraesCS1D01G312800 chr3D 95.876 97 2 1 5182 5278 12881657 12881751 7.440000e-34 156.0
20 TraesCS1D01G312800 chr3A 79.149 964 163 27 3575 4531 575133524 575132592 2.820000e-177 632.0
21 TraesCS1D01G312800 chr3A 96.842 95 3 0 5182 5276 639017719 639017625 5.750000e-35 159.0
22 TraesCS1D01G312800 chr6D 97.872 94 2 0 5176 5269 11067847 11067940 4.450000e-36 163.0
23 TraesCS1D01G312800 chr4A 100.000 88 0 0 5184 5271 644038470 644038557 4.450000e-36 163.0
24 TraesCS1D01G312800 chr4A 95.050 101 5 0 5181 5281 625958146 625958046 5.750000e-35 159.0
25 TraesCS1D01G312800 chr2B 95.000 100 3 2 5183 5282 583156235 583156332 7.440000e-34 156.0
26 TraesCS1D01G312800 chrUn 94.949 99 3 2 5184 5280 92814883 92814981 2.680000e-33 154.0
27 TraesCS1D01G312800 chr5D 76.410 195 43 2 4328 4519 465698806 465699000 9.830000e-18 102.0
28 TraesCS1D01G312800 chr2A 85.542 83 7 1 5460 5537 606521745 606521827 1.280000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G312800 chr1D 408525466 408531014 5548 False 10248.00 10248 100.00000 1 5549 1 chr1D.!!$F1 5548
1 TraesCS1D01G312800 chr1A 504610954 504617491 6537 False 1364.78 3363 90.62660 4 5471 5 chr1A.!!$F3 5467
2 TraesCS1D01G312800 chr1B 549789920 549794806 4886 False 1644.85 3144 91.17475 1 4845 4 chr1B.!!$F2 4844
3 TraesCS1D01G312800 chr3B 572371466 572372398 932 True 671.00 671 79.89600 3575 4531 1 chr3B.!!$R1 956
4 TraesCS1D01G312800 chr3D 437026129 437027061 932 True 665.00 665 79.79300 3575 4531 1 chr3D.!!$R1 956
5 TraesCS1D01G312800 chr3A 575132592 575133524 932 True 632.00 632 79.14900 3575 4531 1 chr3A.!!$R1 956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.777446 AGCAGAAGCAACCCCCTAAA 59.223 50.0 0.00 0.0 45.49 1.85 F
993 1884 0.891449 GAGATCTCCTCGGCGATCCA 60.891 60.0 11.27 0.0 37.13 3.41 F
1412 2340 0.332293 TGAATGCCCCAATCTGCTCA 59.668 50.0 0.00 0.0 0.00 4.26 F
1454 2387 1.714541 TCTGTACACCCAAACCGGTA 58.285 50.0 8.00 0.0 33.67 4.02 F
3143 4297 1.393603 GCCCATTTCAAGTCCTAGGC 58.606 55.0 2.96 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1386 2310 0.325860 ATTGGGGCATTCATGGTGCT 60.326 50.000 18.91 1.81 42.16 4.40 R
2447 3588 0.105658 TAGGGCTTAGGCTGTCCGAT 60.106 55.000 5.62 0.00 38.73 4.18 R
2515 3656 1.070445 TCTTGCCCATTGTGCTTTTGG 59.930 47.619 0.00 0.00 0.00 3.28 R
3157 4311 1.804748 GTACACAGCCAACCTTAGTGC 59.195 52.381 0.00 0.00 33.69 4.40 R
4955 6241 3.708631 AGCAGTAATACTCTGGCTCACAT 59.291 43.478 0.00 0.00 33.98 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.777446 AGCAGAAGCAACCCCCTAAA 59.223 50.000 0.00 0.00 45.49 1.85
110 952 3.851403 CCATATTTGCACGCAGTTGTAAC 59.149 43.478 0.00 0.00 41.61 2.50
127 969 3.502211 TGTAACTAAGCAGAAGCAAAGCC 59.498 43.478 0.00 0.00 45.49 4.35
137 979 2.686915 AGAAGCAAAGCCATATCTGCAC 59.313 45.455 0.00 0.00 37.26 4.57
178 1035 1.070577 GCAGTTATAACCGAGCATGCG 60.071 52.381 13.01 0.00 0.00 4.73
318 1181 5.504010 GCGCAGTTATAATTAAGCAGAAGCA 60.504 40.000 0.30 0.00 45.49 3.91
457 1325 1.964223 AGGGAGGCTGATACGTGTATG 59.036 52.381 0.00 0.00 0.00 2.39
901 1781 2.402282 TACTGCGCACCGATCGATCC 62.402 60.000 18.66 5.07 0.00 3.36
938 1818 5.074115 GCATTAGCTAGAACTAGAGGAGGA 58.926 45.833 12.33 0.00 37.91 3.71
956 1836 2.246067 AGGACAGAGCTCAGGGATAGAA 59.754 50.000 17.77 0.00 0.00 2.10
966 1856 6.322126 AGCTCAGGGATAGAATTCAGATAGT 58.678 40.000 8.44 0.00 0.00 2.12
969 1860 7.613801 GCTCAGGGATAGAATTCAGATAGTAGA 59.386 40.741 8.44 0.00 0.00 2.59
993 1884 0.891449 GAGATCTCCTCGGCGATCCA 60.891 60.000 11.27 0.00 37.13 3.41
996 1887 1.254284 ATCTCCTCGGCGATCCATCC 61.254 60.000 11.27 0.00 0.00 3.51
1020 1911 3.174987 TATCATGGTGGCCCGGGG 61.175 66.667 25.28 9.31 0.00 5.73
1116 2007 2.487428 CTCTGCTCGTCGGTCCTG 59.513 66.667 0.00 0.00 0.00 3.86
1150 2041 1.821216 AATTCAGCCGACGAACCATT 58.179 45.000 0.00 0.00 0.00 3.16
1151 2042 2.684001 ATTCAGCCGACGAACCATTA 57.316 45.000 0.00 0.00 0.00 1.90
1152 2043 1.717194 TTCAGCCGACGAACCATTAC 58.283 50.000 0.00 0.00 0.00 1.89
1159 2050 1.738030 CGACGAACCATTACCCACCTC 60.738 57.143 0.00 0.00 0.00 3.85
1179 2078 7.363094 CCACCTCTACTTTCTTCTTCTATTCGT 60.363 40.741 0.00 0.00 0.00 3.85
1214 2117 3.224884 TCGTTGATGAACATACTCGCA 57.775 42.857 0.00 0.00 31.78 5.10
1304 2211 1.520342 GTCAGTCATCAGCTCGCCC 60.520 63.158 0.00 0.00 0.00 6.13
1346 2270 1.150827 TGCAGACGCATGTTGAAGAG 58.849 50.000 0.00 0.00 45.36 2.85
1350 2274 3.727079 GCAGACGCATGTTGAAGAGATTG 60.727 47.826 0.00 0.00 38.36 2.67
1351 2275 3.434641 CAGACGCATGTTGAAGAGATTGT 59.565 43.478 0.00 0.00 0.00 2.71
1352 2276 4.067896 AGACGCATGTTGAAGAGATTGTT 58.932 39.130 0.00 0.00 0.00 2.83
1365 2289 4.227538 AGAGATTGTTACGACTCGTGTTG 58.772 43.478 14.47 3.30 41.39 3.33
1386 2310 4.798882 TGCCTTCTTCCTTTCCTGTTTTA 58.201 39.130 0.00 0.00 0.00 1.52
1409 2337 0.391597 CCATGAATGCCCCAATCTGC 59.608 55.000 0.00 0.00 0.00 4.26
1412 2340 0.332293 TGAATGCCCCAATCTGCTCA 59.668 50.000 0.00 0.00 0.00 4.26
1438 2366 5.143376 ACATGCCTGAATTTTCCTTTCTG 57.857 39.130 0.00 0.00 0.00 3.02
1448 2376 6.381420 TGAATTTTCCTTTCTGTACACCCAAA 59.619 34.615 0.00 0.00 0.00 3.28
1454 2387 1.714541 TCTGTACACCCAAACCGGTA 58.285 50.000 8.00 0.00 33.67 4.02
1461 2394 2.026915 ACACCCAAACCGGTAGTTATCC 60.027 50.000 8.00 0.00 37.88 2.59
1474 2407 5.106791 CGGTAGTTATCCGTCGATATTCAGT 60.107 44.000 0.00 0.00 42.62 3.41
1479 2412 6.709397 AGTTATCCGTCGATATTCAGTGACTA 59.291 38.462 0.00 0.00 30.96 2.59
1488 2427 6.546403 TCGATATTCAGTGACTAGCTAGGTTT 59.454 38.462 24.35 3.74 0.00 3.27
1490 2429 7.707035 CGATATTCAGTGACTAGCTAGGTTTTT 59.293 37.037 24.35 2.94 0.00 1.94
1536 2482 7.597743 GGAAGAAATTAGTAGACTCGTGTTTCA 59.402 37.037 0.00 0.00 0.00 2.69
1596 2542 3.243359 TCTCCACCTGCCTGAAATTTT 57.757 42.857 0.00 0.00 0.00 1.82
1597 2543 2.892852 TCTCCACCTGCCTGAAATTTTG 59.107 45.455 0.00 0.00 0.00 2.44
1608 2554 6.630071 TGCCTGAAATTTTGCTTTCTATACC 58.370 36.000 0.00 0.00 36.34 2.73
1611 2619 7.602265 GCCTGAAATTTTGCTTTCTATACCAAA 59.398 33.333 0.00 0.00 36.34 3.28
1925 2936 9.407380 TGCTTTCATTATTATGTGGAGTATTGT 57.593 29.630 0.00 0.00 33.34 2.71
2000 3011 7.437862 TGTTAAGCAAAAGCAATCAGTTTTAGG 59.562 33.333 0.00 0.00 29.89 2.69
2049 3087 2.046892 CCCCTGCCTGTCTGAACG 60.047 66.667 0.00 0.00 0.00 3.95
2126 3164 3.629142 ATAGGTGTGCTTAGACCAACC 57.371 47.619 0.00 0.00 34.36 3.77
2145 3183 2.283298 CCCTGTTCTCACCATGAATCG 58.717 52.381 0.00 0.00 0.00 3.34
2197 3239 5.564550 AGATTAGTGATCACAAGTTTGGCT 58.435 37.500 27.02 10.18 37.22 4.75
2266 3308 2.203800 TTAGTAGCGGTTGCATCTCG 57.796 50.000 0.00 0.00 46.23 4.04
2315 3357 2.954753 CTGCGTGACGTCCAAAGGC 61.955 63.158 14.12 12.25 0.00 4.35
2382 3523 9.647918 TTGTTAGTCTCACTCTCATCCTAATAT 57.352 33.333 0.00 0.00 0.00 1.28
2411 3552 4.949856 TGAAAGAACAAAAGGCTTCTGTCT 59.050 37.500 6.68 3.55 33.46 3.41
2442 3583 2.503331 TGCAATGTCGTCTGGATTTGT 58.497 42.857 0.00 0.00 0.00 2.83
2447 3588 5.163764 GCAATGTCGTCTGGATTTGTCAATA 60.164 40.000 0.00 0.00 0.00 1.90
2450 3591 4.803613 TGTCGTCTGGATTTGTCAATATCG 59.196 41.667 0.00 0.00 0.00 2.92
2455 3596 5.235186 GTCTGGATTTGTCAATATCGGACAG 59.765 44.000 9.35 0.00 45.20 3.51
2515 3656 2.555199 AGCATCGTTTCTGTCTATGCC 58.445 47.619 0.00 0.00 43.06 4.40
2591 3737 6.018180 CCCATGCATCATCATGTATCTTATCG 60.018 42.308 0.00 0.00 41.60 2.92
2599 3745 7.087007 TCATCATGTATCTTATCGTTGAGCTC 58.913 38.462 6.82 6.82 0.00 4.09
2613 3759 4.180057 GTTGAGCTCTCATGAACCTACTG 58.820 47.826 16.19 0.00 39.64 2.74
2620 3766 5.426504 CTCTCATGAACCTACTGCTCAAAT 58.573 41.667 0.00 0.00 0.00 2.32
2672 3818 4.322080 AAGCCCAAAGTCAAAACTAAGC 57.678 40.909 0.00 0.00 33.48 3.09
2674 3820 4.725490 AGCCCAAAGTCAAAACTAAGCTA 58.275 39.130 0.00 0.00 33.48 3.32
2735 3884 5.453567 AACACAAGAGGAAAGGTTTATGC 57.546 39.130 0.00 0.00 0.00 3.14
2737 3886 4.278419 ACACAAGAGGAAAGGTTTATGCAC 59.722 41.667 0.00 0.00 0.00 4.57
2739 3888 5.047802 CACAAGAGGAAAGGTTTATGCACAT 60.048 40.000 0.00 0.00 0.00 3.21
2749 3898 4.080356 AGGTTTATGCACATTCCTAGCTGA 60.080 41.667 0.00 0.00 0.00 4.26
2768 3917 3.433343 TGACAACTTGATTCCCATGCAT 58.567 40.909 0.00 0.00 0.00 3.96
2769 3918 3.444742 TGACAACTTGATTCCCATGCATC 59.555 43.478 0.00 0.00 0.00 3.91
2770 3919 3.433343 ACAACTTGATTCCCATGCATCA 58.567 40.909 0.00 0.00 0.00 3.07
2772 3921 3.377253 ACTTGATTCCCATGCATCACT 57.623 42.857 0.00 0.00 0.00 3.41
2773 3922 4.508551 ACTTGATTCCCATGCATCACTA 57.491 40.909 0.00 0.00 0.00 2.74
2774 3923 5.057843 ACTTGATTCCCATGCATCACTAT 57.942 39.130 0.00 0.00 0.00 2.12
2775 3924 4.825634 ACTTGATTCCCATGCATCACTATG 59.174 41.667 0.00 0.00 36.09 2.23
2808 3958 3.228188 ACTTGAGCTTTCATGGACCAA 57.772 42.857 0.00 0.00 0.00 3.67
2814 3964 4.041567 TGAGCTTTCATGGACCAACTCTAA 59.958 41.667 0.00 0.00 0.00 2.10
3143 4297 1.393603 GCCCATTTCAAGTCCTAGGC 58.606 55.000 2.96 0.00 0.00 3.93
3225 4379 4.169508 CACGATCAATTCTTCTCTCGTGT 58.830 43.478 13.09 0.00 46.41 4.49
3226 4380 4.031089 CACGATCAATTCTTCTCTCGTGTG 59.969 45.833 13.09 0.00 46.41 3.82
3228 4382 4.264145 CGATCAATTCTTCTCTCGTGTGAC 59.736 45.833 0.00 0.00 0.00 3.67
3243 4397 3.315418 GTGTGACTAGAACCGTTCCTTC 58.685 50.000 7.68 3.06 0.00 3.46
3245 4399 4.217118 GTGTGACTAGAACCGTTCCTTCTA 59.783 45.833 7.68 0.00 0.00 2.10
3267 4422 6.942576 TCTACTAAACTAGGGTGTAGTTCGTT 59.057 38.462 4.61 0.00 42.13 3.85
3369 4524 2.033801 GCTACGCAACCTACCTATTCGA 59.966 50.000 0.00 0.00 0.00 3.71
3440 4595 9.337396 ACGGTTAATTAAAGATTGCATCTATGA 57.663 29.630 0.00 0.00 39.08 2.15
3468 4646 8.795842 TGGTTATAATTCCTTTGATGTTACGT 57.204 30.769 0.00 0.00 0.00 3.57
3507 4689 6.624352 TGCATGATGGCTAAATTAGTTCTC 57.376 37.500 0.00 0.00 34.04 2.87
3510 4692 7.286087 TGCATGATGGCTAAATTAGTTCTCATT 59.714 33.333 0.00 0.00 34.04 2.57
3516 4702 8.806429 TGGCTAAATTAGTTCTCATTCATGAA 57.194 30.769 11.26 11.26 36.18 2.57
3696 4882 1.516365 CTGACACGACCGTCCTCACT 61.516 60.000 0.00 0.00 34.88 3.41
3752 4938 0.748450 ACGTTCAACGAGGACCTTGA 59.252 50.000 18.84 2.77 46.05 3.02
3753 4939 1.269621 ACGTTCAACGAGGACCTTGAG 60.270 52.381 18.84 7.58 46.05 3.02
3777 4963 1.153823 CGCCTCCGACGAGTCATTT 60.154 57.895 0.00 0.00 36.29 2.32
3783 4969 2.379634 CGACGAGTCATTTGCCGCA 61.380 57.895 4.02 0.00 0.00 5.69
4658 5847 7.514747 GCTCGTTTATTAGTCACAGGTTTATCG 60.515 40.741 0.00 0.00 0.00 2.92
4792 5981 5.411831 TCTGATCTGTGTTGCTACTGATT 57.588 39.130 0.00 0.00 38.73 2.57
4841 6030 0.311790 CAATTTGCGCTCCTGTGTGT 59.688 50.000 9.73 0.00 0.00 3.72
4846 6035 0.534877 TGCGCTCCTGTGTGTTTGAT 60.535 50.000 9.73 0.00 0.00 2.57
4859 6048 9.398170 CCTGTGTGTTTGATAAGTAAAATTCAG 57.602 33.333 0.00 0.00 0.00 3.02
4894 6164 8.432805 GGAAGAATTTAAGACAGATATCCCAGA 58.567 37.037 0.00 0.00 0.00 3.86
4911 6181 5.575157 TCCCAGATACTTGCACCATTTTTA 58.425 37.500 0.00 0.00 0.00 1.52
4912 6182 6.194235 TCCCAGATACTTGCACCATTTTTAT 58.806 36.000 0.00 0.00 0.00 1.40
4913 6183 7.350382 TCCCAGATACTTGCACCATTTTTATA 58.650 34.615 0.00 0.00 0.00 0.98
4914 6184 7.284489 TCCCAGATACTTGCACCATTTTTATAC 59.716 37.037 0.00 0.00 0.00 1.47
4973 6259 7.559590 AAAATCATGTGAGCCAGAGTATTAC 57.440 36.000 0.00 0.00 0.00 1.89
4985 6271 7.007723 AGCCAGAGTATTACTGCTACTTATCT 58.992 38.462 0.00 0.00 34.47 1.98
5041 6327 3.354131 TTTTTGCGGGTGCTTGTTC 57.646 47.368 0.00 0.00 43.34 3.18
5049 6335 1.026718 GGGTGCTTGTTCTGCGCTAT 61.027 55.000 9.73 0.00 40.39 2.97
5050 6336 0.375106 GGTGCTTGTTCTGCGCTATC 59.625 55.000 9.73 0.00 40.39 2.08
5092 6378 2.522836 AGTGCTGATCGATCCATCAC 57.477 50.000 22.31 22.77 0.00 3.06
5182 6470 4.133078 AGGAGTCTGTTTCTGCTCTTTTG 58.867 43.478 0.00 0.00 0.00 2.44
5183 6471 3.879892 GGAGTCTGTTTCTGCTCTTTTGT 59.120 43.478 0.00 0.00 0.00 2.83
5184 6472 5.057149 GGAGTCTGTTTCTGCTCTTTTGTA 58.943 41.667 0.00 0.00 0.00 2.41
5185 6473 5.050023 GGAGTCTGTTTCTGCTCTTTTGTAC 60.050 44.000 0.00 0.00 0.00 2.90
5186 6474 5.675538 AGTCTGTTTCTGCTCTTTTGTACT 58.324 37.500 0.00 0.00 0.00 2.73
5187 6475 5.755861 AGTCTGTTTCTGCTCTTTTGTACTC 59.244 40.000 0.00 0.00 0.00 2.59
5188 6476 5.050023 GTCTGTTTCTGCTCTTTTGTACTCC 60.050 44.000 0.00 0.00 0.00 3.85
5189 6477 4.134563 TGTTTCTGCTCTTTTGTACTCCC 58.865 43.478 0.00 0.00 0.00 4.30
5190 6478 4.141482 TGTTTCTGCTCTTTTGTACTCCCT 60.141 41.667 0.00 0.00 0.00 4.20
5191 6479 3.963428 TCTGCTCTTTTGTACTCCCTC 57.037 47.619 0.00 0.00 0.00 4.30
5192 6480 2.567615 TCTGCTCTTTTGTACTCCCTCC 59.432 50.000 0.00 0.00 0.00 4.30
5193 6481 1.275291 TGCTCTTTTGTACTCCCTCCG 59.725 52.381 0.00 0.00 0.00 4.63
5194 6482 1.275573 GCTCTTTTGTACTCCCTCCGT 59.724 52.381 0.00 0.00 0.00 4.69
5195 6483 2.494870 GCTCTTTTGTACTCCCTCCGTA 59.505 50.000 0.00 0.00 0.00 4.02
5196 6484 3.056322 GCTCTTTTGTACTCCCTCCGTAA 60.056 47.826 0.00 0.00 0.00 3.18
5197 6485 4.562143 GCTCTTTTGTACTCCCTCCGTAAA 60.562 45.833 0.00 0.00 0.00 2.01
5198 6486 4.886579 TCTTTTGTACTCCCTCCGTAAAC 58.113 43.478 0.00 0.00 0.00 2.01
5199 6487 4.590222 TCTTTTGTACTCCCTCCGTAAACT 59.410 41.667 0.00 0.00 0.00 2.66
5200 6488 5.774690 TCTTTTGTACTCCCTCCGTAAACTA 59.225 40.000 0.00 0.00 0.00 2.24
5201 6489 6.267471 TCTTTTGTACTCCCTCCGTAAACTAA 59.733 38.462 0.00 0.00 0.00 2.24
5202 6490 6.610075 TTTGTACTCCCTCCGTAAACTAAT 57.390 37.500 0.00 0.00 0.00 1.73
5203 6491 7.716799 TTTGTACTCCCTCCGTAAACTAATA 57.283 36.000 0.00 0.00 0.00 0.98
5204 6492 7.902920 TTGTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
5205 6493 8.995027 TTGTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
5206 6494 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
5207 6495 9.420118 TGTACTCCCTCCGTAAACTAATATAAA 57.580 33.333 0.00 0.00 0.00 1.40
5210 6498 7.930325 ACTCCCTCCGTAAACTAATATAAAAGC 59.070 37.037 0.00 0.00 0.00 3.51
5211 6499 6.925165 TCCCTCCGTAAACTAATATAAAAGCG 59.075 38.462 0.00 0.00 0.00 4.68
5212 6500 6.703165 CCCTCCGTAAACTAATATAAAAGCGT 59.297 38.462 0.00 0.00 0.00 5.07
5213 6501 7.225341 CCCTCCGTAAACTAATATAAAAGCGTT 59.775 37.037 0.00 0.00 0.00 4.84
5214 6502 8.606602 CCTCCGTAAACTAATATAAAAGCGTTT 58.393 33.333 2.53 2.53 0.00 3.60
5232 6520 9.918630 AAAGCGTTTAGATTACTACTTTAGTGA 57.081 29.630 0.00 0.00 39.81 3.41
5234 6522 9.733219 AGCGTTTAGATTACTACTTTAGTGATC 57.267 33.333 9.14 9.14 46.38 2.92
5242 6530 9.733219 GATTACTACTTTAGTGATCTAAACGCT 57.267 33.333 9.68 0.00 44.10 5.07
5243 6531 9.733219 ATTACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
5244 6532 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
5245 6533 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
5246 6534 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
5247 6535 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
5262 6550 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
5263 6551 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
5264 6552 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
5274 6562 6.936968 AGTTTACAGAGGGAGTAGTTGATT 57.063 37.500 0.00 0.00 0.00 2.57
5307 6595 2.638480 TTGACACTCAAGGGGACAAG 57.362 50.000 0.00 0.00 31.83 3.16
5325 6614 6.350194 GGGACAAGGGAAGTCAAATTAATCAC 60.350 42.308 0.00 0.00 37.74 3.06
5327 6616 5.183140 ACAAGGGAAGTCAAATTAATCACGG 59.817 40.000 0.00 0.00 0.00 4.94
5349 6638 5.528870 GGCACAAGTAAATGTAGCAAGTTT 58.471 37.500 0.00 0.00 32.55 2.66
5357 6646 3.678056 ATGTAGCAAGTTTCGGTGAGA 57.322 42.857 0.00 0.00 0.00 3.27
5358 6647 3.026630 TGTAGCAAGTTTCGGTGAGAG 57.973 47.619 0.00 0.00 0.00 3.20
5359 6648 2.626266 TGTAGCAAGTTTCGGTGAGAGA 59.374 45.455 0.00 0.00 0.00 3.10
5360 6649 3.258372 TGTAGCAAGTTTCGGTGAGAGAT 59.742 43.478 0.00 0.00 0.00 2.75
5361 6650 2.693069 AGCAAGTTTCGGTGAGAGATG 58.307 47.619 0.00 0.00 0.00 2.90
5362 6651 2.037772 AGCAAGTTTCGGTGAGAGATGT 59.962 45.455 0.00 0.00 0.00 3.06
5364 6653 3.994392 GCAAGTTTCGGTGAGAGATGTAA 59.006 43.478 0.00 0.00 0.00 2.41
5365 6654 4.631813 GCAAGTTTCGGTGAGAGATGTAAT 59.368 41.667 0.00 0.00 0.00 1.89
5366 6655 5.446473 GCAAGTTTCGGTGAGAGATGTAATG 60.446 44.000 0.00 0.00 0.00 1.90
5367 6656 4.184629 AGTTTCGGTGAGAGATGTAATGC 58.815 43.478 0.00 0.00 0.00 3.56
5368 6657 3.885724 TTCGGTGAGAGATGTAATGCA 57.114 42.857 0.00 0.00 0.00 3.96
5369 6658 3.885724 TCGGTGAGAGATGTAATGCAA 57.114 42.857 0.00 0.00 0.00 4.08
5371 6660 4.574892 TCGGTGAGAGATGTAATGCAAAA 58.425 39.130 0.00 0.00 0.00 2.44
5372 6661 5.000591 TCGGTGAGAGATGTAATGCAAAAA 58.999 37.500 0.00 0.00 0.00 1.94
5373 6662 5.647658 TCGGTGAGAGATGTAATGCAAAAAT 59.352 36.000 0.00 0.00 0.00 1.82
5374 6663 6.150976 TCGGTGAGAGATGTAATGCAAAAATT 59.849 34.615 0.00 0.00 0.00 1.82
5376 6665 7.315142 GGTGAGAGATGTAATGCAAAAATTCA 58.685 34.615 0.00 0.00 0.00 2.57
5377 6666 7.814107 GGTGAGAGATGTAATGCAAAAATTCAA 59.186 33.333 0.00 0.00 0.00 2.69
5379 6668 9.577110 TGAGAGATGTAATGCAAAAATTCAATC 57.423 29.630 0.00 0.00 0.00 2.67
5380 6669 9.798994 GAGAGATGTAATGCAAAAATTCAATCT 57.201 29.630 0.00 0.00 30.36 2.40
5381 6670 9.582431 AGAGATGTAATGCAAAAATTCAATCTG 57.418 29.630 0.00 0.00 28.99 2.90
5382 6671 9.362539 GAGATGTAATGCAAAAATTCAATCTGT 57.637 29.630 0.00 0.00 28.99 3.41
5383 6672 9.146984 AGATGTAATGCAAAAATTCAATCTGTG 57.853 29.630 0.00 0.00 0.00 3.66
5396 6685 5.885230 TCAATCTGTGAACAATAGGCTTG 57.115 39.130 0.00 0.00 31.51 4.01
5398 6687 5.645067 TCAATCTGTGAACAATAGGCTTGAG 59.355 40.000 0.00 0.00 31.51 3.02
5400 6689 2.421424 CTGTGAACAATAGGCTTGAGGC 59.579 50.000 0.00 0.00 41.43 4.70
5434 6867 3.788227 TTCACACTTATGCCAAGAGGT 57.212 42.857 2.41 0.00 37.19 3.85
5436 6869 2.027192 TCACACTTATGCCAAGAGGTCC 60.027 50.000 2.41 0.00 37.19 4.46
5437 6870 2.026822 CACACTTATGCCAAGAGGTCCT 60.027 50.000 0.00 0.00 37.19 3.85
5447 6880 3.173965 CCAAGAGGTCCTCTAGGTTCAA 58.826 50.000 22.12 0.00 40.28 2.69
5450 6883 4.067944 AGAGGTCCTCTAGGTTCAACAT 57.932 45.455 20.52 0.00 39.28 2.71
5452 6885 3.769844 GAGGTCCTCTAGGTTCAACATGA 59.230 47.826 12.02 0.00 36.34 3.07
5455 6888 3.260884 GTCCTCTAGGTTCAACATGACCA 59.739 47.826 0.00 0.00 36.34 4.02
5471 6904 1.002315 GACCATTTTGCATTGCCCTGT 59.998 47.619 6.12 0.00 0.00 4.00
5472 6905 1.270947 ACCATTTTGCATTGCCCTGTG 60.271 47.619 6.12 0.60 0.00 3.66
5473 6906 0.800012 CATTTTGCATTGCCCTGTGC 59.200 50.000 6.12 0.00 41.61 4.57
5482 6915 3.813596 GCCCTGTGCACGGATAAG 58.186 61.111 27.46 10.71 40.77 1.73
5483 6916 1.819632 GCCCTGTGCACGGATAAGG 60.820 63.158 27.46 19.16 40.77 2.69
5484 6917 1.602237 CCCTGTGCACGGATAAGGT 59.398 57.895 27.46 0.00 0.00 3.50
5485 6918 0.035439 CCCTGTGCACGGATAAGGTT 60.035 55.000 27.46 0.00 0.00 3.50
5486 6919 1.613255 CCCTGTGCACGGATAAGGTTT 60.613 52.381 27.46 0.00 0.00 3.27
5487 6920 1.468520 CCTGTGCACGGATAAGGTTTG 59.531 52.381 27.46 2.73 0.00 2.93
5488 6921 0.878416 TGTGCACGGATAAGGTTTGC 59.122 50.000 13.13 0.00 0.00 3.68
5489 6922 0.170339 GTGCACGGATAAGGTTTGCC 59.830 55.000 0.00 0.00 31.94 4.52
5491 6924 0.733150 GCACGGATAAGGTTTGCCTC 59.267 55.000 0.00 0.00 46.33 4.70
5492 6925 1.006832 CACGGATAAGGTTTGCCTCG 58.993 55.000 0.00 0.00 46.33 4.63
5493 6926 0.611714 ACGGATAAGGTTTGCCTCGT 59.388 50.000 0.00 0.00 46.33 4.18
5494 6927 1.826720 ACGGATAAGGTTTGCCTCGTA 59.173 47.619 0.00 0.00 46.33 3.43
5495 6928 2.199236 CGGATAAGGTTTGCCTCGTAC 58.801 52.381 0.00 0.00 46.33 3.67
5496 6929 2.417651 CGGATAAGGTTTGCCTCGTACA 60.418 50.000 0.00 0.00 46.33 2.90
5497 6930 3.602483 GGATAAGGTTTGCCTCGTACAA 58.398 45.455 0.00 0.00 46.33 2.41
5498 6931 4.196971 GGATAAGGTTTGCCTCGTACAAT 58.803 43.478 0.00 0.00 46.33 2.71
5499 6932 4.638865 GGATAAGGTTTGCCTCGTACAATT 59.361 41.667 0.00 0.00 46.33 2.32
5500 6933 5.220796 GGATAAGGTTTGCCTCGTACAATTC 60.221 44.000 0.00 0.00 46.33 2.17
5501 6934 3.418684 AGGTTTGCCTCGTACAATTCT 57.581 42.857 0.00 0.00 42.67 2.40
5502 6935 3.751518 AGGTTTGCCTCGTACAATTCTT 58.248 40.909 0.00 0.00 42.67 2.52
5503 6936 3.751698 AGGTTTGCCTCGTACAATTCTTC 59.248 43.478 0.00 0.00 42.67 2.87
5504 6937 3.119955 GGTTTGCCTCGTACAATTCTTCC 60.120 47.826 0.00 0.00 0.00 3.46
5505 6938 2.396590 TGCCTCGTACAATTCTTCCC 57.603 50.000 0.00 0.00 0.00 3.97
5506 6939 1.065709 TGCCTCGTACAATTCTTCCCC 60.066 52.381 0.00 0.00 0.00 4.81
5507 6940 1.065709 GCCTCGTACAATTCTTCCCCA 60.066 52.381 0.00 0.00 0.00 4.96
5508 6941 2.906354 CCTCGTACAATTCTTCCCCAG 58.094 52.381 0.00 0.00 0.00 4.45
5509 6942 2.500098 CCTCGTACAATTCTTCCCCAGA 59.500 50.000 0.00 0.00 0.00 3.86
5510 6943 3.522553 CTCGTACAATTCTTCCCCAGAC 58.477 50.000 0.00 0.00 0.00 3.51
5511 6944 2.235402 TCGTACAATTCTTCCCCAGACC 59.765 50.000 0.00 0.00 0.00 3.85
5512 6945 2.236395 CGTACAATTCTTCCCCAGACCT 59.764 50.000 0.00 0.00 0.00 3.85
5513 6946 2.887151 ACAATTCTTCCCCAGACCTG 57.113 50.000 0.00 0.00 0.00 4.00
5522 6955 3.072476 CCAGACCTGGTGTGGGAG 58.928 66.667 30.24 9.40 42.33 4.30
5523 6956 2.596851 CCAGACCTGGTGTGGGAGG 61.597 68.421 30.24 9.20 42.33 4.30
5524 6957 1.843376 CAGACCTGGTGTGGGAGGT 60.843 63.158 15.79 0.00 45.73 3.85
5525 6958 1.073706 AGACCTGGTGTGGGAGGTT 60.074 57.895 2.82 0.00 42.95 3.50
5526 6959 1.128188 AGACCTGGTGTGGGAGGTTC 61.128 60.000 2.82 0.00 42.95 3.62
5527 6960 1.073706 ACCTGGTGTGGGAGGTTCT 60.074 57.895 0.00 0.00 39.75 3.01
5528 6961 0.192566 ACCTGGTGTGGGAGGTTCTA 59.807 55.000 0.00 0.00 39.75 2.10
5529 6962 0.905357 CCTGGTGTGGGAGGTTCTAG 59.095 60.000 0.00 0.00 0.00 2.43
5530 6963 0.250513 CTGGTGTGGGAGGTTCTAGC 59.749 60.000 0.00 0.00 0.00 3.42
5531 6964 0.472925 TGGTGTGGGAGGTTCTAGCA 60.473 55.000 0.00 0.00 0.00 3.49
5532 6965 0.912486 GGTGTGGGAGGTTCTAGCAT 59.088 55.000 0.00 0.00 0.00 3.79
5533 6966 1.282157 GGTGTGGGAGGTTCTAGCATT 59.718 52.381 0.00 0.00 0.00 3.56
5534 6967 2.359900 GTGTGGGAGGTTCTAGCATTG 58.640 52.381 0.00 0.00 0.00 2.82
5535 6968 1.281867 TGTGGGAGGTTCTAGCATTGG 59.718 52.381 0.00 0.00 0.00 3.16
5536 6969 0.918983 TGGGAGGTTCTAGCATTGGG 59.081 55.000 0.00 0.00 0.00 4.12
5537 6970 0.183731 GGGAGGTTCTAGCATTGGGG 59.816 60.000 0.00 0.00 0.00 4.96
5538 6971 0.183731 GGAGGTTCTAGCATTGGGGG 59.816 60.000 0.00 0.00 0.00 5.40
5539 6972 0.466372 GAGGTTCTAGCATTGGGGGC 60.466 60.000 0.00 0.00 0.00 5.80
5540 6973 0.921256 AGGTTCTAGCATTGGGGGCT 60.921 55.000 0.00 0.00 45.18 5.19
5541 6974 0.843984 GGTTCTAGCATTGGGGGCTA 59.156 55.000 0.00 0.00 42.62 3.93
5544 6977 2.828868 TAGCATTGGGGGCTAGCG 59.171 61.111 9.00 0.00 42.62 4.26
5545 6978 2.070039 TAGCATTGGGGGCTAGCGT 61.070 57.895 9.00 0.00 42.62 5.07
5546 6979 2.324014 TAGCATTGGGGGCTAGCGTG 62.324 60.000 9.00 1.94 42.62 5.34
5547 6980 2.589540 CATTGGGGGCTAGCGTGA 59.410 61.111 9.00 0.00 0.00 4.35
5548 6981 1.149174 CATTGGGGGCTAGCGTGAT 59.851 57.895 9.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.159254 TCGCTTGCTTCTGCTTGTTTTT 60.159 40.909 0.00 0.00 40.48 1.94
96 938 1.529438 TGCTTAGTTACAACTGCGTGC 59.471 47.619 4.86 4.71 40.07 5.34
110 952 4.820716 AGATATGGCTTTGCTTCTGCTTAG 59.179 41.667 0.00 0.00 40.48 2.18
127 969 8.145767 ACAAAATGGAAATATGGTGCAGATATG 58.854 33.333 0.00 0.00 0.00 1.78
137 979 6.083098 TGCGGATACAAAATGGAAATATGG 57.917 37.500 0.00 0.00 0.00 2.74
178 1035 2.668834 GCTACAGATATCGGTCGCTTCC 60.669 54.545 20.26 0.00 31.97 3.46
250 1107 2.672961 TATATGCTGCAGATACCGGC 57.327 50.000 20.43 0.39 35.17 6.13
318 1181 9.477484 AATCGTTTATGTTAGAGATATCGCTTT 57.523 29.630 14.48 1.07 0.00 3.51
376 1239 1.176527 TAGCCACAAGATTTGCTGCC 58.823 50.000 0.00 0.00 35.34 4.85
801 1676 1.346722 GGAAAAGGTTCAGGACGGAGA 59.653 52.381 0.00 0.00 35.25 3.71
901 1781 0.824109 TAATGCCTCGTGGACTCTGG 59.176 55.000 7.92 0.00 34.57 3.86
938 1818 4.293494 TGAATTCTATCCCTGAGCTCTGT 58.707 43.478 16.19 1.31 0.00 3.41
956 1836 7.311929 GGAGATCTCCCTCTCTACTATCTGAAT 60.312 44.444 28.84 0.00 43.94 2.57
986 1877 3.402110 TGATACATGTTGGATGGATCGC 58.598 45.455 2.30 0.00 41.21 4.58
993 1884 3.225104 GCCACCATGATACATGTTGGAT 58.775 45.455 24.85 0.15 33.99 3.41
996 1887 1.682854 GGGCCACCATGATACATGTTG 59.317 52.381 2.30 6.64 36.50 3.33
1020 1911 2.894387 GCCGCAGCAGGAGACATC 60.894 66.667 7.39 0.00 39.53 3.06
1074 1965 4.899239 CCGCAGGCGAGGATCCAC 62.899 72.222 15.82 6.85 46.14 4.02
1116 2007 3.440522 GCTGAATTAACTCACCCAGGAAC 59.559 47.826 0.00 0.00 0.00 3.62
1150 2041 5.652324 AGAAGAAGAAAGTAGAGGTGGGTA 58.348 41.667 0.00 0.00 0.00 3.69
1151 2042 4.494591 AGAAGAAGAAAGTAGAGGTGGGT 58.505 43.478 0.00 0.00 0.00 4.51
1152 2043 6.800072 ATAGAAGAAGAAAGTAGAGGTGGG 57.200 41.667 0.00 0.00 0.00 4.61
1159 2050 8.989653 AGGAAACGAATAGAAGAAGAAAGTAG 57.010 34.615 0.00 0.00 0.00 2.57
1179 2078 2.029380 TCAACGATCGAGCTCAAGGAAA 60.029 45.455 24.34 0.00 0.00 3.13
1214 2117 4.584743 TGCGTATGACTGTATGAGGAAGAT 59.415 41.667 0.00 0.00 0.00 2.40
1241 2144 3.726607 GATCTAGGAGACGACCTTACGA 58.273 50.000 6.00 2.89 41.00 3.43
1304 2211 6.575201 GCAGACTGAAAACAGAAGAAAATACG 59.425 38.462 6.65 0.00 0.00 3.06
1346 2270 2.159881 GGCAACACGAGTCGTAACAATC 60.160 50.000 19.43 5.65 38.32 2.67
1350 2274 1.454653 GAAGGCAACACGAGTCGTAAC 59.545 52.381 19.43 7.80 38.32 2.50
1351 2275 1.338973 AGAAGGCAACACGAGTCGTAA 59.661 47.619 19.43 0.00 38.32 3.18
1352 2276 0.956633 AGAAGGCAACACGAGTCGTA 59.043 50.000 19.43 0.00 38.32 3.43
1365 2289 4.321304 GCTAAAACAGGAAAGGAAGAAGGC 60.321 45.833 0.00 0.00 0.00 4.35
1386 2310 0.325860 ATTGGGGCATTCATGGTGCT 60.326 50.000 18.91 1.81 42.16 4.40
1409 2337 5.105473 AGGAAAATTCAGGCATGTTGATGAG 60.105 40.000 0.00 0.00 0.00 2.90
1412 2340 5.750352 AAGGAAAATTCAGGCATGTTGAT 57.250 34.783 0.00 0.00 0.00 2.57
1438 2366 2.549064 AACTACCGGTTTGGGTGTAC 57.451 50.000 15.04 0.00 44.64 2.90
1454 2387 5.531659 AGTCACTGAATATCGACGGATAACT 59.468 40.000 0.00 0.00 38.58 2.24
1461 2394 4.475763 AGCTAGTCACTGAATATCGACG 57.524 45.455 0.00 0.00 33.56 5.12
1488 2427 7.789273 TCCAGAAAACTGAACATACGTAAAA 57.211 32.000 0.00 0.00 0.00 1.52
1490 2429 7.211573 TCTTCCAGAAAACTGAACATACGTAA 58.788 34.615 0.00 0.00 0.00 3.18
1491 2430 6.751157 TCTTCCAGAAAACTGAACATACGTA 58.249 36.000 0.00 0.00 0.00 3.57
1521 2460 4.989168 AGGAACAATGAAACACGAGTCTAC 59.011 41.667 0.00 0.00 0.00 2.59
1536 2482 2.893489 GCCAGAACAGGAAAGGAACAAT 59.107 45.455 0.00 0.00 0.00 2.71
1629 2637 8.207545 ACCAAGGACAGATCAGATTATAAACTC 58.792 37.037 0.00 0.00 0.00 3.01
1630 2638 8.095452 ACCAAGGACAGATCAGATTATAAACT 57.905 34.615 0.00 0.00 0.00 2.66
1633 2641 6.767902 GCAACCAAGGACAGATCAGATTATAA 59.232 38.462 0.00 0.00 0.00 0.98
1635 2643 5.128919 GCAACCAAGGACAGATCAGATTAT 58.871 41.667 0.00 0.00 0.00 1.28
1636 2644 4.019411 TGCAACCAAGGACAGATCAGATTA 60.019 41.667 0.00 0.00 0.00 1.75
1767 2777 3.618351 GCTCTACTGACTACCTACACCA 58.382 50.000 0.00 0.00 0.00 4.17
1925 2936 7.490657 ACCAGCCGTAATGGAATAGAATATA 57.509 36.000 4.94 0.00 40.51 0.86
1926 2937 6.374417 ACCAGCCGTAATGGAATAGAATAT 57.626 37.500 4.94 0.00 40.51 1.28
2077 3115 4.092529 GTGCATCATTCATATCCAGTAGCG 59.907 45.833 0.00 0.00 0.00 4.26
2078 3116 4.394300 GGTGCATCATTCATATCCAGTAGC 59.606 45.833 0.00 0.00 0.00 3.58
2126 3164 2.674852 CACGATTCATGGTGAGAACAGG 59.325 50.000 0.00 0.00 38.58 4.00
2197 3239 6.860034 TCATAATGTCTTCTAGGTAGGCCTA 58.140 40.000 8.91 8.91 44.90 3.93
2266 3308 4.689612 TGGCAGAATACTCTATTGGGTC 57.310 45.455 0.00 0.00 0.00 4.46
2315 3357 0.883833 ATCGCTGCAAAAGAGGGTTG 59.116 50.000 0.00 0.00 0.00 3.77
2382 3523 5.596836 AGCCTTTTGTTCTTTCATTGTCA 57.403 34.783 0.00 0.00 0.00 3.58
2427 3568 4.803613 CGATATTGACAAATCCAGACGACA 59.196 41.667 0.00 0.00 0.00 4.35
2442 3583 2.037251 GGCTTAGGCTGTCCGATATTGA 59.963 50.000 0.00 0.00 38.73 2.57
2447 3588 0.105658 TAGGGCTTAGGCTGTCCGAT 60.106 55.000 5.62 0.00 38.73 4.18
2450 3591 1.139256 GACTTAGGGCTTAGGCTGTCC 59.861 57.143 5.62 0.00 38.73 4.02
2455 3596 3.621558 ACATTTGACTTAGGGCTTAGGC 58.378 45.455 0.00 0.00 37.82 3.93
2499 3640 3.410631 TTTGGGCATAGACAGAAACGA 57.589 42.857 0.00 0.00 0.00 3.85
2500 3641 3.670627 GCTTTTGGGCATAGACAGAAACG 60.671 47.826 0.00 0.00 0.00 3.60
2513 3654 4.699626 CCCATTGTGCTTTTGGGC 57.300 55.556 0.00 0.00 43.45 5.36
2515 3656 1.070445 TCTTGCCCATTGTGCTTTTGG 59.930 47.619 0.00 0.00 0.00 3.28
2591 3737 4.180057 CAGTAGGTTCATGAGAGCTCAAC 58.820 47.826 17.77 10.77 43.58 3.18
2599 3745 6.072286 ACAAATTTGAGCAGTAGGTTCATGAG 60.072 38.462 24.64 0.00 36.56 2.90
2613 3759 8.638685 ATGTGCAAATATAGACAAATTTGAGC 57.361 30.769 24.64 14.97 42.90 4.26
2647 3793 4.178956 AGTTTTGACTTTGGGCTTAGGA 57.821 40.909 0.00 0.00 0.00 2.94
2672 3818 7.997482 TGCTATCTAGGAGTACAACAAACTAG 58.003 38.462 0.00 0.00 0.00 2.57
2674 3820 6.852420 TGCTATCTAGGAGTACAACAAACT 57.148 37.500 0.00 0.00 0.00 2.66
2678 3824 7.603180 AATGATGCTATCTAGGAGTACAACA 57.397 36.000 0.00 0.00 0.00 3.33
2679 3825 7.600752 GGAAATGATGCTATCTAGGAGTACAAC 59.399 40.741 0.00 0.00 0.00 3.32
2680 3826 7.290014 TGGAAATGATGCTATCTAGGAGTACAA 59.710 37.037 0.00 0.00 0.00 2.41
2681 3827 6.782494 TGGAAATGATGCTATCTAGGAGTACA 59.218 38.462 0.00 0.00 0.00 2.90
2682 3828 7.233389 TGGAAATGATGCTATCTAGGAGTAC 57.767 40.000 0.00 0.00 0.00 2.73
2683 3829 9.720874 ATATGGAAATGATGCTATCTAGGAGTA 57.279 33.333 0.00 0.00 0.00 2.59
2684 3830 6.949117 ATGGAAATGATGCTATCTAGGAGT 57.051 37.500 0.00 0.00 0.00 3.85
2719 3865 4.706962 GGAATGTGCATAAACCTTTCCTCT 59.293 41.667 10.13 0.00 32.54 3.69
2735 3884 4.318332 TCAAGTTGTCAGCTAGGAATGTG 58.682 43.478 2.11 0.00 0.00 3.21
2737 3886 5.065731 GGAATCAAGTTGTCAGCTAGGAATG 59.934 44.000 2.11 0.00 0.00 2.67
2739 3888 4.565652 GGGAATCAAGTTGTCAGCTAGGAA 60.566 45.833 2.11 0.00 0.00 3.36
2749 3898 3.194116 GTGATGCATGGGAATCAAGTTGT 59.806 43.478 2.46 0.00 40.83 3.32
2769 3918 8.867935 GCTCAAGTATAAGATACATGCATAGTG 58.132 37.037 0.00 0.00 0.00 2.74
2770 3919 8.811017 AGCTCAAGTATAAGATACATGCATAGT 58.189 33.333 0.00 2.80 0.00 2.12
2773 3922 8.915057 AAAGCTCAAGTATAAGATACATGCAT 57.085 30.769 0.00 0.00 0.00 3.96
2774 3923 7.986889 TGAAAGCTCAAGTATAAGATACATGCA 59.013 33.333 0.00 0.00 0.00 3.96
2775 3924 8.370493 TGAAAGCTCAAGTATAAGATACATGC 57.630 34.615 0.00 0.00 0.00 4.06
2777 3926 9.499479 CCATGAAAGCTCAAGTATAAGATACAT 57.501 33.333 0.00 0.00 34.49 2.29
2778 3927 8.704668 TCCATGAAAGCTCAAGTATAAGATACA 58.295 33.333 0.00 0.00 34.49 2.29
2779 3928 8.983724 GTCCATGAAAGCTCAAGTATAAGATAC 58.016 37.037 0.00 0.00 34.49 2.24
2785 3935 5.692115 TGGTCCATGAAAGCTCAAGTATA 57.308 39.130 0.00 0.00 34.49 1.47
2808 3958 6.518200 GCATCTCTTAGCTGCCTAATTAGAGT 60.518 42.308 14.28 0.00 31.62 3.24
2814 3964 5.483231 TCATAGCATCTCTTAGCTGCCTAAT 59.517 40.000 0.00 0.00 38.04 1.73
3151 4305 2.297033 CAGCCAACCTTAGTGCAACATT 59.703 45.455 0.00 0.00 41.43 2.71
3157 4311 1.804748 GTACACAGCCAACCTTAGTGC 59.195 52.381 0.00 0.00 33.69 4.40
3160 4314 3.006967 AGTCTGTACACAGCCAACCTTAG 59.993 47.826 4.43 0.00 43.46 2.18
3225 4379 4.660168 AGTAGAAGGAACGGTTCTAGTCA 58.340 43.478 19.40 1.61 35.98 3.41
3226 4380 6.749923 TTAGTAGAAGGAACGGTTCTAGTC 57.250 41.667 19.40 13.72 39.69 2.59
3228 4382 7.155655 AGTTTAGTAGAAGGAACGGTTCTAG 57.844 40.000 19.40 0.00 37.22 2.43
3243 4397 6.749923 ACGAACTACACCCTAGTTTAGTAG 57.250 41.667 0.00 0.00 38.30 2.57
3245 4399 6.410942 AAACGAACTACACCCTAGTTTAGT 57.589 37.500 0.00 0.00 40.44 2.24
3267 4422 2.119801 AGGTCGACGACTAGGCTTAA 57.880 50.000 25.87 0.00 32.47 1.85
3383 4538 9.406828 GAATTCATGTTTTACCTAACCAGTTTC 57.593 33.333 0.00 0.00 0.00 2.78
3442 4597 9.403583 ACGTAACATCAAAGGAATTATAACCAT 57.596 29.630 0.00 0.00 0.00 3.55
3444 4599 8.671028 ACACGTAACATCAAAGGAATTATAACC 58.329 33.333 0.00 0.00 0.00 2.85
3468 4646 8.680001 GCCATCATGCATCATAGATAATTTACA 58.320 33.333 0.00 0.00 0.00 2.41
3471 4653 7.956328 AGCCATCATGCATCATAGATAATTT 57.044 32.000 0.00 0.00 0.00 1.82
3474 4656 9.470399 AATTTAGCCATCATGCATCATAGATAA 57.530 29.630 0.00 0.00 0.00 1.75
3478 4660 8.277490 ACTAATTTAGCCATCATGCATCATAG 57.723 34.615 0.00 0.00 0.00 2.23
3550 4736 1.407989 GCCTTCAGCTCCTGCATTAGT 60.408 52.381 0.00 0.00 42.74 2.24
3551 4737 1.307097 GCCTTCAGCTCCTGCATTAG 58.693 55.000 0.00 0.00 42.74 1.73
3552 4738 0.462581 CGCCTTCAGCTCCTGCATTA 60.463 55.000 0.00 0.00 42.74 1.90
3711 4897 1.787847 GAGAACGACACCAATGCCG 59.212 57.895 0.00 0.00 0.00 5.69
3720 4906 1.659335 GAACGTGCCGAGAACGACA 60.659 57.895 10.83 0.00 43.68 4.35
3726 4912 2.723116 TCGTTGAACGTGCCGAGA 59.277 55.556 17.86 0.00 43.14 4.04
3736 4922 0.756294 TGCTCAAGGTCCTCGTTGAA 59.244 50.000 0.00 0.00 44.23 2.69
3774 4960 2.361104 ACCCACGATGCGGCAAAT 60.361 55.556 6.82 0.00 0.00 2.32
3783 4969 2.064581 GTAGGAGGCCACCCACGAT 61.065 63.158 16.55 0.00 0.00 3.73
3969 5155 4.156622 TACGAGACGCCGAGCACG 62.157 66.667 0.00 0.00 39.43 5.34
4658 5847 4.333633 CAGAGCTGCTGTAAAGTAAAGC 57.666 45.455 7.01 0.00 39.85 3.51
4716 5905 8.904834 CAATGAGCTCTTACCCGTAGTATATAT 58.095 37.037 16.19 0.00 0.00 0.86
4717 5906 7.148120 GCAATGAGCTCTTACCCGTAGTATATA 60.148 40.741 16.19 0.00 41.15 0.86
4718 5907 6.350277 GCAATGAGCTCTTACCCGTAGTATAT 60.350 42.308 16.19 0.00 41.15 0.86
4719 5908 5.048224 GCAATGAGCTCTTACCCGTAGTATA 60.048 44.000 16.19 0.00 41.15 1.47
4792 5981 7.446931 TGAATAAGTACATTGAACAAAGGCAGA 59.553 33.333 0.00 0.00 0.00 4.26
4846 6035 9.595823 CTTCCGAGGTAATCTGAATTTTACTTA 57.404 33.333 0.00 0.00 31.64 2.24
4859 6048 7.980099 TCTGTCTTAAATTCTTCCGAGGTAATC 59.020 37.037 0.00 0.00 0.00 1.75
4865 6054 7.600752 GGGATATCTGTCTTAAATTCTTCCGAG 59.399 40.741 2.05 0.00 0.00 4.63
4866 6055 7.070696 TGGGATATCTGTCTTAAATTCTTCCGA 59.929 37.037 2.05 0.00 0.00 4.55
4955 6241 3.708631 AGCAGTAATACTCTGGCTCACAT 59.291 43.478 0.00 0.00 33.98 3.21
5041 6327 4.216731 CAATTATGCAGTTGATAGCGCAG 58.783 43.478 11.47 0.00 37.88 5.18
5092 6378 4.079970 TGATTCCTAGCTACTCATACGGG 58.920 47.826 0.00 0.00 0.00 5.28
5184 6472 7.930325 GCTTTTATATTAGTTTACGGAGGGAGT 59.070 37.037 0.00 0.00 0.00 3.85
5185 6473 7.115947 CGCTTTTATATTAGTTTACGGAGGGAG 59.884 40.741 0.00 0.00 0.00 4.30
5186 6474 6.925165 CGCTTTTATATTAGTTTACGGAGGGA 59.075 38.462 0.00 0.00 0.00 4.20
5187 6475 6.703165 ACGCTTTTATATTAGTTTACGGAGGG 59.297 38.462 0.00 0.00 0.00 4.30
5188 6476 7.704789 ACGCTTTTATATTAGTTTACGGAGG 57.295 36.000 0.00 0.00 0.00 4.30
5206 6494 9.918630 TCACTAAAGTAGTAATCTAAACGCTTT 57.081 29.630 0.00 0.00 37.23 3.51
5208 6496 9.733219 GATCACTAAAGTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 37.23 5.07
5209 6497 9.733219 AGATCACTAAAGTAGTAATCTAAACGC 57.267 33.333 0.03 0.00 41.03 4.84
5215 6503 9.733219 GCGTTTAGATCACTAAAGTAGTAATCT 57.267 33.333 6.37 6.37 44.17 2.40
5216 6504 9.733219 AGCGTTTAGATCACTAAAGTAGTAATC 57.267 33.333 0.00 0.00 45.42 1.75
5217 6505 9.733219 GAGCGTTTAGATCACTAAAGTAGTAAT 57.267 33.333 0.00 0.00 45.42 1.89
5218 6506 8.954350 AGAGCGTTTAGATCACTAAAGTAGTAA 58.046 33.333 0.00 0.00 45.42 2.24
5219 6507 8.503458 AGAGCGTTTAGATCACTAAAGTAGTA 57.497 34.615 0.00 0.00 45.42 1.82
5220 6508 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
5221 6509 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
5236 6524 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
5237 6525 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
5238 6526 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
5239 6527 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
5240 6528 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
5246 6534 9.710818 TCAACTACTCCCTCTGTAAACTAATAT 57.289 33.333 0.00 0.00 0.00 1.28
5247 6535 9.710818 ATCAACTACTCCCTCTGTAAACTAATA 57.289 33.333 0.00 0.00 0.00 0.98
5248 6536 8.611051 ATCAACTACTCCCTCTGTAAACTAAT 57.389 34.615 0.00 0.00 0.00 1.73
5249 6537 8.431910 AATCAACTACTCCCTCTGTAAACTAA 57.568 34.615 0.00 0.00 0.00 2.24
5250 6538 8.431910 AAATCAACTACTCCCTCTGTAAACTA 57.568 34.615 0.00 0.00 0.00 2.24
5251 6539 6.936968 AATCAACTACTCCCTCTGTAAACT 57.063 37.500 0.00 0.00 0.00 2.66
5255 6543 8.585881 GCATATAAATCAACTACTCCCTCTGTA 58.414 37.037 0.00 0.00 0.00 2.74
5256 6544 7.291182 AGCATATAAATCAACTACTCCCTCTGT 59.709 37.037 0.00 0.00 0.00 3.41
5257 6545 7.675062 AGCATATAAATCAACTACTCCCTCTG 58.325 38.462 0.00 0.00 0.00 3.35
5258 6546 7.732593 AGAGCATATAAATCAACTACTCCCTCT 59.267 37.037 0.00 0.00 0.00 3.69
5259 6547 7.902087 AGAGCATATAAATCAACTACTCCCTC 58.098 38.462 0.00 0.00 0.00 4.30
5260 6548 7.863901 AGAGCATATAAATCAACTACTCCCT 57.136 36.000 0.00 0.00 0.00 4.20
5274 6562 9.330063 CCTTGAGTGTCAAAATAGAGCATATAA 57.670 33.333 0.00 0.00 35.73 0.98
5294 6582 1.003696 GACTTCCCTTGTCCCCTTGAG 59.996 57.143 0.00 0.00 0.00 3.02
5299 6587 2.604912 ATTTGACTTCCCTTGTCCCC 57.395 50.000 0.00 0.00 33.83 4.81
5307 6595 3.442273 TGCCGTGATTAATTTGACTTCCC 59.558 43.478 0.00 0.00 0.00 3.97
5325 6614 3.188460 ACTTGCTACATTTACTTGTGCCG 59.812 43.478 0.00 0.00 0.00 5.69
5327 6616 5.339611 CGAAACTTGCTACATTTACTTGTGC 59.660 40.000 0.00 0.00 0.00 4.57
5349 6638 3.885724 TTGCATTACATCTCTCACCGA 57.114 42.857 0.00 0.00 0.00 4.69
5357 6646 9.146984 CACAGATTGAATTTTTGCATTACATCT 57.853 29.630 0.00 0.00 0.00 2.90
5358 6647 9.142515 TCACAGATTGAATTTTTGCATTACATC 57.857 29.630 0.00 0.00 0.00 3.06
5359 6648 9.491675 TTCACAGATTGAATTTTTGCATTACAT 57.508 25.926 0.00 0.00 39.45 2.29
5360 6649 8.763356 GTTCACAGATTGAATTTTTGCATTACA 58.237 29.630 0.00 0.00 46.14 2.41
5361 6650 8.763356 TGTTCACAGATTGAATTTTTGCATTAC 58.237 29.630 0.00 0.00 46.14 1.89
5362 6651 8.883954 TGTTCACAGATTGAATTTTTGCATTA 57.116 26.923 0.00 0.00 46.14 1.90
5364 6653 7.789273 TTGTTCACAGATTGAATTTTTGCAT 57.211 28.000 0.00 0.00 46.14 3.96
5365 6654 7.789273 ATTGTTCACAGATTGAATTTTTGCA 57.211 28.000 0.00 0.00 46.14 4.08
5366 6655 8.437742 CCTATTGTTCACAGATTGAATTTTTGC 58.562 33.333 0.00 0.00 46.14 3.68
5367 6656 8.437742 GCCTATTGTTCACAGATTGAATTTTTG 58.562 33.333 0.00 0.00 46.14 2.44
5368 6657 8.370182 AGCCTATTGTTCACAGATTGAATTTTT 58.630 29.630 0.00 0.00 46.14 1.94
5369 6658 7.899973 AGCCTATTGTTCACAGATTGAATTTT 58.100 30.769 0.00 0.00 46.14 1.82
5371 6660 7.177216 TCAAGCCTATTGTTCACAGATTGAATT 59.823 33.333 0.00 0.00 46.14 2.17
5372 6661 6.660521 TCAAGCCTATTGTTCACAGATTGAAT 59.339 34.615 0.00 0.00 46.14 2.57
5373 6662 6.003326 TCAAGCCTATTGTTCACAGATTGAA 58.997 36.000 0.00 0.00 42.26 2.69
5374 6663 5.559770 TCAAGCCTATTGTTCACAGATTGA 58.440 37.500 0.00 0.00 0.00 2.57
5376 6665 4.946157 CCTCAAGCCTATTGTTCACAGATT 59.054 41.667 0.00 0.00 0.00 2.40
5377 6666 4.521146 CCTCAAGCCTATTGTTCACAGAT 58.479 43.478 0.00 0.00 0.00 2.90
5379 6668 2.421424 GCCTCAAGCCTATTGTTCACAG 59.579 50.000 0.00 0.00 34.35 3.66
5380 6669 2.040278 AGCCTCAAGCCTATTGTTCACA 59.960 45.455 0.00 0.00 45.47 3.58
5381 6670 2.421424 CAGCCTCAAGCCTATTGTTCAC 59.579 50.000 0.00 0.00 45.47 3.18
5382 6671 2.040278 ACAGCCTCAAGCCTATTGTTCA 59.960 45.455 0.00 0.00 45.47 3.18
5383 6672 2.421424 CACAGCCTCAAGCCTATTGTTC 59.579 50.000 0.00 0.00 45.47 3.18
5385 6674 1.630369 TCACAGCCTCAAGCCTATTGT 59.370 47.619 0.00 0.00 45.47 2.71
5386 6675 2.408271 TCACAGCCTCAAGCCTATTG 57.592 50.000 0.00 0.00 45.47 1.90
5387 6676 2.507058 TCATCACAGCCTCAAGCCTATT 59.493 45.455 0.00 0.00 45.47 1.73
5389 6678 1.571955 TCATCACAGCCTCAAGCCTA 58.428 50.000 0.00 0.00 45.47 3.93
5390 6679 0.694771 TTCATCACAGCCTCAAGCCT 59.305 50.000 0.00 0.00 45.47 4.58
5391 6680 1.093159 CTTCATCACAGCCTCAAGCC 58.907 55.000 0.00 0.00 45.47 4.35
5392 6681 1.818642 ACTTCATCACAGCCTCAAGC 58.181 50.000 0.00 0.00 44.25 4.01
5393 6682 5.645067 TGAAATACTTCATCACAGCCTCAAG 59.355 40.000 0.00 0.00 36.62 3.02
5394 6683 5.412594 GTGAAATACTTCATCACAGCCTCAA 59.587 40.000 0.00 0.00 43.39 3.02
5395 6684 4.937620 GTGAAATACTTCATCACAGCCTCA 59.062 41.667 0.00 0.00 43.39 3.86
5396 6685 4.937620 TGTGAAATACTTCATCACAGCCTC 59.062 41.667 3.87 0.00 46.11 4.70
5398 6687 5.182001 AAGTGTGAAATACTTCATCACAGCC 59.818 40.000 16.35 0.00 45.71 4.85
5400 6689 7.907045 GCATAAGTGTGAAATACTTCATCACAG 59.093 37.037 16.35 8.41 45.71 3.66
5401 6690 7.148255 GGCATAAGTGTGAAATACTTCATCACA 60.148 37.037 16.35 3.87 45.71 3.58
5402 6691 7.148255 TGGCATAAGTGTGAAATACTTCATCAC 60.148 37.037 9.93 9.93 45.71 3.06
5403 6692 6.883756 TGGCATAAGTGTGAAATACTTCATCA 59.116 34.615 0.00 0.00 45.71 3.07
5434 6867 3.516586 TGGTCATGTTGAACCTAGAGGA 58.483 45.455 1.60 0.00 31.76 3.71
5436 6869 6.615088 CAAAATGGTCATGTTGAACCTAGAG 58.385 40.000 7.86 0.00 38.08 2.43
5437 6870 5.048083 GCAAAATGGTCATGTTGAACCTAGA 60.048 40.000 15.78 0.00 38.08 2.43
5447 6880 2.616001 GGGCAATGCAAAATGGTCATGT 60.616 45.455 7.79 0.00 0.00 3.21
5450 6883 1.002201 CAGGGCAATGCAAAATGGTCA 59.998 47.619 7.79 0.00 0.00 4.02
5452 6885 1.058284 ACAGGGCAATGCAAAATGGT 58.942 45.000 7.79 0.00 0.00 3.55
5455 6888 3.236604 GCACAGGGCAATGCAAAAT 57.763 47.368 7.79 0.00 43.97 1.82
5471 6904 2.562125 GGCAAACCTTATCCGTGCA 58.438 52.632 0.00 0.00 36.93 4.57
5482 6915 3.119955 GGAAGAATTGTACGAGGCAAACC 60.120 47.826 0.00 0.00 0.00 3.27
5483 6916 3.119955 GGGAAGAATTGTACGAGGCAAAC 60.120 47.826 0.00 0.00 0.00 2.93
5484 6917 3.078837 GGGAAGAATTGTACGAGGCAAA 58.921 45.455 0.00 0.00 0.00 3.68
5485 6918 2.617021 GGGGAAGAATTGTACGAGGCAA 60.617 50.000 0.00 0.00 0.00 4.52
5486 6919 1.065709 GGGGAAGAATTGTACGAGGCA 60.066 52.381 0.00 0.00 0.00 4.75
5487 6920 1.065709 TGGGGAAGAATTGTACGAGGC 60.066 52.381 0.00 0.00 0.00 4.70
5488 6921 2.500098 TCTGGGGAAGAATTGTACGAGG 59.500 50.000 0.00 0.00 29.54 4.63
5489 6922 3.522553 GTCTGGGGAAGAATTGTACGAG 58.477 50.000 0.00 0.00 36.40 4.18
5490 6923 2.235402 GGTCTGGGGAAGAATTGTACGA 59.765 50.000 0.00 0.00 36.40 3.43
5491 6924 2.236395 AGGTCTGGGGAAGAATTGTACG 59.764 50.000 0.00 0.00 36.40 3.67
5492 6925 3.610911 CAGGTCTGGGGAAGAATTGTAC 58.389 50.000 0.00 0.00 36.40 2.90
5493 6926 2.576191 CCAGGTCTGGGGAAGAATTGTA 59.424 50.000 9.08 0.00 46.81 2.41
5494 6927 1.355720 CCAGGTCTGGGGAAGAATTGT 59.644 52.381 9.08 0.00 46.81 2.71
5495 6928 2.134789 CCAGGTCTGGGGAAGAATTG 57.865 55.000 9.08 0.00 46.81 2.32
5506 6939 1.418908 AACCTCCCACACCAGGTCTG 61.419 60.000 0.00 0.00 42.61 3.51
5507 6940 1.073706 AACCTCCCACACCAGGTCT 60.074 57.895 0.00 0.00 42.61 3.85
5508 6941 1.128188 AGAACCTCCCACACCAGGTC 61.128 60.000 0.00 0.00 42.61 3.85
5509 6942 0.192566 TAGAACCTCCCACACCAGGT 59.807 55.000 0.00 0.00 45.59 4.00
5510 6943 0.905357 CTAGAACCTCCCACACCAGG 59.095 60.000 0.00 0.00 35.69 4.45
5511 6944 0.250513 GCTAGAACCTCCCACACCAG 59.749 60.000 0.00 0.00 0.00 4.00
5512 6945 0.472925 TGCTAGAACCTCCCACACCA 60.473 55.000 0.00 0.00 0.00 4.17
5513 6946 0.912486 ATGCTAGAACCTCCCACACC 59.088 55.000 0.00 0.00 0.00 4.16
5514 6947 2.359900 CAATGCTAGAACCTCCCACAC 58.640 52.381 0.00 0.00 0.00 3.82
5515 6948 1.281867 CCAATGCTAGAACCTCCCACA 59.718 52.381 0.00 0.00 0.00 4.17
5516 6949 1.408822 CCCAATGCTAGAACCTCCCAC 60.409 57.143 0.00 0.00 0.00 4.61
5517 6950 0.918983 CCCAATGCTAGAACCTCCCA 59.081 55.000 0.00 0.00 0.00 4.37
5518 6951 0.183731 CCCCAATGCTAGAACCTCCC 59.816 60.000 0.00 0.00 0.00 4.30
5519 6952 0.183731 CCCCCAATGCTAGAACCTCC 59.816 60.000 0.00 0.00 0.00 4.30
5520 6953 0.466372 GCCCCCAATGCTAGAACCTC 60.466 60.000 0.00 0.00 0.00 3.85
5521 6954 0.921256 AGCCCCCAATGCTAGAACCT 60.921 55.000 0.00 0.00 37.28 3.50
5522 6955 0.843984 TAGCCCCCAATGCTAGAACC 59.156 55.000 0.00 0.00 40.23 3.62
5527 6960 2.070039 ACGCTAGCCCCCAATGCTA 61.070 57.895 9.66 0.00 40.23 3.49
5528 6961 3.411517 ACGCTAGCCCCCAATGCT 61.412 61.111 9.66 0.00 42.81 3.79
5529 6962 2.965716 ATCACGCTAGCCCCCAATGC 62.966 60.000 9.66 0.00 0.00 3.56
5530 6963 1.149174 ATCACGCTAGCCCCCAATG 59.851 57.895 9.66 0.00 0.00 2.82
5531 6964 3.660724 ATCACGCTAGCCCCCAAT 58.339 55.556 9.66 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.