Multiple sequence alignment - TraesCS1D01G312300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G312300 chr1D 100.000 3636 0 0 1 3636 407919024 407915389 0.000000e+00 6715
1 TraesCS1D01G312300 chr1D 78.683 319 50 15 151 455 407971718 407971404 2.860000e-46 196
2 TraesCS1D01G312300 chr1A 92.707 1138 59 12 1982 3098 503380396 503379262 0.000000e+00 1620
3 TraesCS1D01G312300 chr1A 91.825 1003 57 16 918 1917 503381487 503380507 0.000000e+00 1375
4 TraesCS1D01G312300 chr1A 90.588 425 37 1 1 422 503383735 503383311 8.820000e-156 560
5 TraesCS1D01G312300 chr1A 95.000 80 4 0 863 942 503381568 503381489 3.810000e-25 126
6 TraesCS1D01G312300 chr1B 91.344 1086 51 21 856 1910 548612529 548611456 0.000000e+00 1445
7 TraesCS1D01G312300 chr1B 91.889 1048 46 14 1954 2978 548611464 548610433 0.000000e+00 1428
8 TraesCS1D01G312300 chr1B 86.726 678 46 13 2973 3636 548549772 548549125 0.000000e+00 713
9 TraesCS1D01G312300 chr1B 84.333 517 43 13 22 520 548613246 548612750 4.250000e-129 472
10 TraesCS1D01G312300 chr7A 91.322 242 21 0 575 816 543426202 543425961 7.530000e-87 331
11 TraesCS1D01G312300 chr7A 90.638 235 22 0 577 811 442273896 442273662 2.730000e-81 313
12 TraesCS1D01G312300 chr3D 91.597 238 18 2 575 811 467323584 467323820 9.730000e-86 327
13 TraesCS1D01G312300 chr3A 90.984 244 21 1 575 817 550663192 550662949 9.730000e-86 327
14 TraesCS1D01G312300 chr3A 90.000 240 24 0 577 816 728889294 728889055 9.800000e-81 311
15 TraesCS1D01G312300 chr6D 91.304 230 20 0 575 804 408547632 408547861 7.580000e-82 315
16 TraesCS1D01G312300 chr2A 91.304 230 20 0 575 804 117536890 117536661 7.580000e-82 315
17 TraesCS1D01G312300 chr2D 90.336 238 22 1 576 813 609466328 609466564 9.800000e-81 311
18 TraesCS1D01G312300 chr4A 89.669 242 25 0 575 816 548341536 548341295 3.530000e-80 309
19 TraesCS1D01G312300 chr2B 79.433 282 38 10 2689 2952 172221813 172222092 8.020000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G312300 chr1D 407915389 407919024 3635 True 6715.00 6715 100.000000 1 3636 1 chr1D.!!$R1 3635
1 TraesCS1D01G312300 chr1A 503379262 503383735 4473 True 920.25 1620 92.530000 1 3098 4 chr1A.!!$R1 3097
2 TraesCS1D01G312300 chr1B 548610433 548613246 2813 True 1115.00 1445 89.188667 22 2978 3 chr1B.!!$R2 2956
3 TraesCS1D01G312300 chr1B 548549125 548549772 647 True 713.00 713 86.726000 2973 3636 1 chr1B.!!$R1 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 540 0.396811 AGTTTGCGTAAGAGGCTGGT 59.603 50.0 0.0 0.0 43.02 4.00 F
847 2470 0.676782 AAGAAGCCGATTTGGGGACG 60.677 55.0 0.0 0.0 38.63 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 3103 0.106708 AGTCGGCTTCAAGAACAGCA 59.893 50.0 0.0 0.0 37.81 4.41 R
2844 4689 1.004595 CACTGGATCACATGAGTGCG 58.995 55.0 0.0 0.0 45.49 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 4.819105 CCGGATGTATAGGGAGCATTTA 57.181 45.455 0.00 0.00 0.00 1.40
136 137 1.010170 AGGGAGCATTTAGGGAGTCCT 59.990 52.381 9.58 0.00 46.96 3.85
146 147 6.042208 GCATTTAGGGAGTCCTACTGTAGATT 59.958 42.308 16.22 1.34 44.80 2.40
147 148 7.437748 CATTTAGGGAGTCCTACTGTAGATTG 58.562 42.308 16.22 0.08 44.80 2.67
159 160 3.762288 ACTGTAGATTGTCTAAGCGGTGA 59.238 43.478 0.00 0.00 29.58 4.02
164 165 1.508632 TTGTCTAAGCGGTGACTTGC 58.491 50.000 6.64 0.00 34.57 4.01
244 250 7.509141 TGAACTGTTTTGTGATGTCATATGT 57.491 32.000 1.90 0.00 0.00 2.29
285 291 4.928661 ATGTCACTTCATGTCGCTTAAC 57.071 40.909 0.00 0.00 0.00 2.01
384 400 9.716531 AATATTAGGAAGCTACCGTAATTAACC 57.283 33.333 14.87 0.00 34.73 2.85
494 540 0.396811 AGTTTGCGTAAGAGGCTGGT 59.603 50.000 0.00 0.00 43.02 4.00
512 559 1.661341 GTACCGGAGCGAGAAGTAGA 58.339 55.000 9.46 0.00 0.00 2.59
517 2140 1.202200 CGGAGCGAGAAGTAGAAGTGG 60.202 57.143 0.00 0.00 0.00 4.00
519 2142 2.098443 GGAGCGAGAAGTAGAAGTGGAG 59.902 54.545 0.00 0.00 0.00 3.86
529 2152 3.834813 AGTAGAAGTGGAGCATTGAGTGA 59.165 43.478 0.00 0.00 0.00 3.41
536 2159 2.019984 GGAGCATTGAGTGATTCCCAC 58.980 52.381 0.00 0.00 46.03 4.61
566 2189 7.972623 TTTTTGTGGTTGTACTAAATCAACG 57.027 32.000 0.00 0.00 43.04 4.10
567 2190 6.922247 TTTGTGGTTGTACTAAATCAACGA 57.078 33.333 0.00 0.00 43.04 3.85
568 2191 7.499321 TTTGTGGTTGTACTAAATCAACGAT 57.501 32.000 0.00 0.00 43.04 3.73
569 2192 8.604640 TTTGTGGTTGTACTAAATCAACGATA 57.395 30.769 0.00 0.00 43.04 2.92
570 2193 8.604640 TTGTGGTTGTACTAAATCAACGATAA 57.395 30.769 0.00 0.00 43.04 1.75
571 2194 8.780846 TGTGGTTGTACTAAATCAACGATAAT 57.219 30.769 0.00 0.00 43.04 1.28
572 2195 9.221933 TGTGGTTGTACTAAATCAACGATAATT 57.778 29.630 0.00 0.00 43.04 1.40
575 2198 9.859692 GGTTGTACTAAATCAACGATAATTAGC 57.140 33.333 0.00 0.00 43.04 3.09
576 2199 9.859692 GTTGTACTAAATCAACGATAATTAGCC 57.140 33.333 0.00 0.00 35.41 3.93
577 2200 9.826574 TTGTACTAAATCAACGATAATTAGCCT 57.173 29.630 0.00 0.00 0.00 4.58
578 2201 9.472361 TGTACTAAATCAACGATAATTAGCCTC 57.528 33.333 0.00 0.00 0.00 4.70
579 2202 9.694137 GTACTAAATCAACGATAATTAGCCTCT 57.306 33.333 0.00 0.00 0.00 3.69
581 2204 9.614792 ACTAAATCAACGATAATTAGCCTCTTT 57.385 29.630 0.00 0.00 0.00 2.52
582 2205 9.869844 CTAAATCAACGATAATTAGCCTCTTTG 57.130 33.333 0.00 0.00 0.00 2.77
583 2206 8.506168 AAATCAACGATAATTAGCCTCTTTGA 57.494 30.769 8.21 8.21 33.48 2.69
584 2207 8.682936 AATCAACGATAATTAGCCTCTTTGAT 57.317 30.769 10.96 10.96 38.66 2.57
585 2208 8.682936 ATCAACGATAATTAGCCTCTTTGATT 57.317 30.769 10.96 1.44 35.56 2.57
586 2209 8.142994 TCAACGATAATTAGCCTCTTTGATTC 57.857 34.615 0.00 0.00 0.00 2.52
587 2210 7.768582 TCAACGATAATTAGCCTCTTTGATTCA 59.231 33.333 0.00 0.00 0.00 2.57
588 2211 8.562892 CAACGATAATTAGCCTCTTTGATTCAT 58.437 33.333 0.00 0.00 0.00 2.57
589 2212 9.778741 AACGATAATTAGCCTCTTTGATTCATA 57.221 29.630 0.00 0.00 0.00 2.15
590 2213 9.429359 ACGATAATTAGCCTCTTTGATTCATAG 57.571 33.333 0.00 0.00 0.00 2.23
591 2214 8.877779 CGATAATTAGCCTCTTTGATTCATAGG 58.122 37.037 4.57 5.38 0.00 2.57
592 2215 9.950496 GATAATTAGCCTCTTTGATTCATAGGA 57.050 33.333 12.17 0.85 0.00 2.94
595 2218 9.652114 AATTAGCCTCTTTGATTCATAGGATTT 57.348 29.630 12.17 0.00 0.00 2.17
596 2219 9.652114 ATTAGCCTCTTTGATTCATAGGATTTT 57.348 29.630 12.17 0.00 0.00 1.82
597 2220 7.579761 AGCCTCTTTGATTCATAGGATTTTC 57.420 36.000 12.17 0.00 0.00 2.29
598 2221 7.121382 AGCCTCTTTGATTCATAGGATTTTCA 58.879 34.615 12.17 0.00 0.00 2.69
599 2222 7.616935 AGCCTCTTTGATTCATAGGATTTTCAA 59.383 33.333 12.17 0.00 0.00 2.69
600 2223 8.253113 GCCTCTTTGATTCATAGGATTTTCAAA 58.747 33.333 12.17 9.08 0.00 2.69
605 2228 9.775854 TTTGATTCATAGGATTTTCAAAAAGCA 57.224 25.926 5.90 0.00 36.09 3.91
606 2229 8.991243 TGATTCATAGGATTTTCAAAAAGCAG 57.009 30.769 5.90 0.00 36.09 4.24
607 2230 8.036575 TGATTCATAGGATTTTCAAAAAGCAGG 58.963 33.333 5.90 0.00 36.09 4.85
608 2231 7.537596 TTCATAGGATTTTCAAAAAGCAGGA 57.462 32.000 5.90 0.00 36.09 3.86
609 2232 7.537596 TCATAGGATTTTCAAAAAGCAGGAA 57.462 32.000 5.90 0.00 36.09 3.36
610 2233 8.137745 TCATAGGATTTTCAAAAAGCAGGAAT 57.862 30.769 5.90 0.00 36.09 3.01
611 2234 8.596293 TCATAGGATTTTCAAAAAGCAGGAATT 58.404 29.630 5.90 0.00 36.09 2.17
612 2235 8.662141 CATAGGATTTTCAAAAAGCAGGAATTG 58.338 33.333 5.90 0.00 36.09 2.32
613 2236 5.999600 AGGATTTTCAAAAAGCAGGAATTGG 59.000 36.000 5.90 0.00 36.09 3.16
614 2237 5.181811 GGATTTTCAAAAAGCAGGAATTGGG 59.818 40.000 5.90 0.00 36.09 4.12
615 2238 5.365021 TTTTCAAAAAGCAGGAATTGGGA 57.635 34.783 0.00 0.00 0.00 4.37
616 2239 5.365021 TTTCAAAAAGCAGGAATTGGGAA 57.635 34.783 0.00 0.00 0.00 3.97
617 2240 5.365021 TTCAAAAAGCAGGAATTGGGAAA 57.635 34.783 0.00 0.00 0.00 3.13
618 2241 5.365021 TCAAAAAGCAGGAATTGGGAAAA 57.635 34.783 0.00 0.00 0.00 2.29
619 2242 5.122519 TCAAAAAGCAGGAATTGGGAAAAC 58.877 37.500 0.00 0.00 0.00 2.43
620 2243 4.769345 AAAAGCAGGAATTGGGAAAACA 57.231 36.364 0.00 0.00 0.00 2.83
621 2244 4.980339 AAAGCAGGAATTGGGAAAACAT 57.020 36.364 0.00 0.00 0.00 2.71
622 2245 3.967332 AGCAGGAATTGGGAAAACATG 57.033 42.857 0.00 0.00 0.00 3.21
623 2246 2.568509 AGCAGGAATTGGGAAAACATGG 59.431 45.455 0.00 0.00 0.00 3.66
624 2247 2.355007 GCAGGAATTGGGAAAACATGGG 60.355 50.000 0.00 0.00 0.00 4.00
625 2248 3.172339 CAGGAATTGGGAAAACATGGGA 58.828 45.455 0.00 0.00 0.00 4.37
626 2249 3.776417 CAGGAATTGGGAAAACATGGGAT 59.224 43.478 0.00 0.00 0.00 3.85
627 2250 4.225717 CAGGAATTGGGAAAACATGGGATT 59.774 41.667 0.00 0.00 0.00 3.01
628 2251 5.424895 CAGGAATTGGGAAAACATGGGATTA 59.575 40.000 0.00 0.00 0.00 1.75
629 2252 5.662657 AGGAATTGGGAAAACATGGGATTAG 59.337 40.000 0.00 0.00 0.00 1.73
630 2253 5.660864 GGAATTGGGAAAACATGGGATTAGA 59.339 40.000 0.00 0.00 0.00 2.10
631 2254 6.183360 GGAATTGGGAAAACATGGGATTAGAG 60.183 42.308 0.00 0.00 0.00 2.43
632 2255 4.946160 TGGGAAAACATGGGATTAGAGT 57.054 40.909 0.00 0.00 0.00 3.24
633 2256 4.599041 TGGGAAAACATGGGATTAGAGTG 58.401 43.478 0.00 0.00 0.00 3.51
634 2257 3.954258 GGGAAAACATGGGATTAGAGTGG 59.046 47.826 0.00 0.00 0.00 4.00
635 2258 3.381590 GGAAAACATGGGATTAGAGTGGC 59.618 47.826 0.00 0.00 0.00 5.01
636 2259 3.737559 AAACATGGGATTAGAGTGGCA 57.262 42.857 0.00 0.00 0.00 4.92
637 2260 3.959495 AACATGGGATTAGAGTGGCAT 57.041 42.857 0.00 0.00 0.00 4.40
638 2261 3.219176 ACATGGGATTAGAGTGGCATG 57.781 47.619 0.00 0.00 0.00 4.06
639 2262 2.511218 ACATGGGATTAGAGTGGCATGT 59.489 45.455 0.00 0.00 0.00 3.21
640 2263 3.144506 CATGGGATTAGAGTGGCATGTC 58.855 50.000 0.00 0.00 0.00 3.06
641 2264 2.195727 TGGGATTAGAGTGGCATGTCA 58.804 47.619 0.00 0.00 0.00 3.58
642 2265 2.779430 TGGGATTAGAGTGGCATGTCAT 59.221 45.455 1.89 0.00 0.00 3.06
643 2266 3.181451 TGGGATTAGAGTGGCATGTCATC 60.181 47.826 1.89 2.36 0.00 2.92
644 2267 3.181451 GGGATTAGAGTGGCATGTCATCA 60.181 47.826 1.89 0.00 0.00 3.07
645 2268 4.506271 GGGATTAGAGTGGCATGTCATCAT 60.506 45.833 1.89 0.00 34.21 2.45
679 2302 9.897744 ACAGAATTGTATAAGTGTTTGATTGTG 57.102 29.630 0.00 0.00 35.25 3.33
680 2303 8.853345 CAGAATTGTATAAGTGTTTGATTGTGC 58.147 33.333 0.00 0.00 0.00 4.57
681 2304 8.575589 AGAATTGTATAAGTGTTTGATTGTGCA 58.424 29.630 0.00 0.00 0.00 4.57
682 2305 9.357652 GAATTGTATAAGTGTTTGATTGTGCAT 57.642 29.630 0.00 0.00 0.00 3.96
685 2308 7.984391 TGTATAAGTGTTTGATTGTGCATAGG 58.016 34.615 0.00 0.00 0.00 2.57
686 2309 7.826744 TGTATAAGTGTTTGATTGTGCATAGGA 59.173 33.333 0.00 0.00 0.00 2.94
687 2310 7.701539 ATAAGTGTTTGATTGTGCATAGGAA 57.298 32.000 0.00 0.00 0.00 3.36
688 2311 6.403866 AAGTGTTTGATTGTGCATAGGAAA 57.596 33.333 0.00 0.00 0.00 3.13
689 2312 6.403866 AGTGTTTGATTGTGCATAGGAAAA 57.596 33.333 0.00 0.00 0.00 2.29
690 2313 6.815089 AGTGTTTGATTGTGCATAGGAAAAA 58.185 32.000 0.00 0.00 0.00 1.94
691 2314 6.701400 AGTGTTTGATTGTGCATAGGAAAAAC 59.299 34.615 0.00 0.00 0.00 2.43
692 2315 5.689514 TGTTTGATTGTGCATAGGAAAAACG 59.310 36.000 0.00 0.00 0.00 3.60
693 2316 5.446143 TTGATTGTGCATAGGAAAAACGT 57.554 34.783 0.00 0.00 0.00 3.99
694 2317 6.561737 TTGATTGTGCATAGGAAAAACGTA 57.438 33.333 0.00 0.00 0.00 3.57
695 2318 6.176975 TGATTGTGCATAGGAAAAACGTAG 57.823 37.500 0.00 0.00 0.00 3.51
696 2319 5.123186 TGATTGTGCATAGGAAAAACGTAGG 59.877 40.000 0.00 0.00 0.00 3.18
697 2320 4.274602 TGTGCATAGGAAAAACGTAGGA 57.725 40.909 0.00 0.00 0.00 2.94
698 2321 4.839121 TGTGCATAGGAAAAACGTAGGAT 58.161 39.130 0.00 0.00 0.00 3.24
699 2322 5.250200 TGTGCATAGGAAAAACGTAGGATT 58.750 37.500 0.00 0.00 0.00 3.01
700 2323 5.353123 TGTGCATAGGAAAAACGTAGGATTC 59.647 40.000 0.00 0.00 0.00 2.52
701 2324 5.585047 GTGCATAGGAAAAACGTAGGATTCT 59.415 40.000 0.00 0.00 0.00 2.40
702 2325 6.093633 GTGCATAGGAAAAACGTAGGATTCTT 59.906 38.462 0.00 0.00 0.00 2.52
703 2326 6.657541 TGCATAGGAAAAACGTAGGATTCTTT 59.342 34.615 0.00 0.00 0.00 2.52
704 2327 7.148306 TGCATAGGAAAAACGTAGGATTCTTTC 60.148 37.037 0.00 0.00 0.00 2.62
705 2328 7.148306 GCATAGGAAAAACGTAGGATTCTTTCA 60.148 37.037 0.00 0.00 0.00 2.69
706 2329 8.726988 CATAGGAAAAACGTAGGATTCTTTCAA 58.273 33.333 0.00 0.00 0.00 2.69
707 2330 7.576861 AGGAAAAACGTAGGATTCTTTCAAA 57.423 32.000 0.00 0.00 0.00 2.69
708 2331 7.649057 AGGAAAAACGTAGGATTCTTTCAAAG 58.351 34.615 0.00 0.00 0.00 2.77
709 2332 7.501225 AGGAAAAACGTAGGATTCTTTCAAAGA 59.499 33.333 0.00 0.00 35.26 2.52
710 2333 7.803659 GGAAAAACGTAGGATTCTTTCAAAGAG 59.196 37.037 0.00 0.00 39.03 2.85
711 2334 6.803154 AAACGTAGGATTCTTTCAAAGAGG 57.197 37.500 0.00 0.00 39.03 3.69
712 2335 5.485209 ACGTAGGATTCTTTCAAAGAGGT 57.515 39.130 0.00 0.00 39.03 3.85
713 2336 5.866207 ACGTAGGATTCTTTCAAAGAGGTT 58.134 37.500 0.00 0.00 39.03 3.50
714 2337 6.296803 ACGTAGGATTCTTTCAAAGAGGTTT 58.703 36.000 0.00 0.00 39.03 3.27
715 2338 6.204882 ACGTAGGATTCTTTCAAAGAGGTTTG 59.795 38.462 0.00 0.00 43.96 2.93
724 2347 4.705110 TCAAAGAGGTTTGAGTGGATGA 57.295 40.909 0.00 0.00 45.82 2.92
725 2348 5.047566 TCAAAGAGGTTTGAGTGGATGAA 57.952 39.130 0.00 0.00 45.82 2.57
726 2349 5.445069 TCAAAGAGGTTTGAGTGGATGAAA 58.555 37.500 0.00 0.00 45.82 2.69
727 2350 5.890985 TCAAAGAGGTTTGAGTGGATGAAAA 59.109 36.000 0.00 0.00 45.82 2.29
728 2351 6.379703 TCAAAGAGGTTTGAGTGGATGAAAAA 59.620 34.615 0.00 0.00 45.82 1.94
754 2377 8.985315 AATCCTATGAAATCTAGTGCAAATGA 57.015 30.769 0.00 0.00 0.00 2.57
759 2382 7.893124 ATGAAATCTAGTGCAAATGAATCCT 57.107 32.000 0.00 0.00 0.00 3.24
767 2390 9.241919 TCTAGTGCAAATGAATCCTATGAAAAA 57.758 29.630 0.00 0.00 0.00 1.94
792 2415 9.675464 AAATTCCTATTGTTTACAATCCTACGA 57.325 29.630 11.13 0.27 44.67 3.43
793 2416 9.675464 AATTCCTATTGTTTACAATCCTACGAA 57.325 29.630 11.13 7.82 44.67 3.85
794 2417 9.847224 ATTCCTATTGTTTACAATCCTACGAAT 57.153 29.630 11.13 9.34 44.67 3.34
796 2419 8.479689 TCCTATTGTTTACAATCCTACGAATCA 58.520 33.333 11.13 0.00 44.67 2.57
797 2420 9.104965 CCTATTGTTTACAATCCTACGAATCAA 57.895 33.333 11.13 0.00 44.67 2.57
802 2425 8.071368 TGTTTACAATCCTACGAATCAAACAAC 58.929 33.333 0.00 0.00 32.26 3.32
803 2426 5.622770 ACAATCCTACGAATCAAACAACC 57.377 39.130 0.00 0.00 0.00 3.77
804 2427 5.313712 ACAATCCTACGAATCAAACAACCT 58.686 37.500 0.00 0.00 0.00 3.50
805 2428 6.469410 ACAATCCTACGAATCAAACAACCTA 58.531 36.000 0.00 0.00 0.00 3.08
806 2429 6.370718 ACAATCCTACGAATCAAACAACCTAC 59.629 38.462 0.00 0.00 0.00 3.18
807 2430 4.487948 TCCTACGAATCAAACAACCTACG 58.512 43.478 0.00 0.00 0.00 3.51
808 2431 4.022068 TCCTACGAATCAAACAACCTACGT 60.022 41.667 0.00 0.00 36.71 3.57
809 2432 5.182950 TCCTACGAATCAAACAACCTACGTA 59.817 40.000 0.00 0.00 34.70 3.57
810 2433 5.514204 CCTACGAATCAAACAACCTACGTAG 59.486 44.000 15.92 15.92 45.89 3.51
812 2435 5.531634 ACGAATCAAACAACCTACGTAGAA 58.468 37.500 24.15 0.00 0.00 2.10
813 2436 5.632347 ACGAATCAAACAACCTACGTAGAAG 59.368 40.000 24.15 14.43 0.00 2.85
815 2438 6.364165 CGAATCAAACAACCTACGTAGAAGAA 59.636 38.462 24.15 1.60 0.00 2.52
816 2439 7.063074 CGAATCAAACAACCTACGTAGAAGAAT 59.937 37.037 24.15 4.39 0.00 2.40
817 2440 7.829378 ATCAAACAACCTACGTAGAAGAATC 57.171 36.000 24.15 0.00 0.00 2.52
818 2441 6.751157 TCAAACAACCTACGTAGAAGAATCA 58.249 36.000 24.15 0.00 0.00 2.57
819 2442 7.383687 TCAAACAACCTACGTAGAAGAATCAT 58.616 34.615 24.15 0.51 0.00 2.45
822 2445 7.596749 ACAACCTACGTAGAAGAATCATTTG 57.403 36.000 24.15 12.92 0.00 2.32
823 2446 7.383687 ACAACCTACGTAGAAGAATCATTTGA 58.616 34.615 24.15 0.00 0.00 2.69
825 2448 8.883731 CAACCTACGTAGAAGAATCATTTGAAT 58.116 33.333 24.15 0.00 0.00 2.57
827 2450 8.258007 ACCTACGTAGAAGAATCATTTGAATCA 58.742 33.333 24.15 0.00 0.00 2.57
828 2451 9.098355 CCTACGTAGAAGAATCATTTGAATCAA 57.902 33.333 24.15 0.00 0.00 2.57
831 2454 9.219603 ACGTAGAAGAATCATTTGAATCAAAGA 57.780 29.630 14.10 11.28 36.76 2.52
834 2457 8.983307 AGAAGAATCATTTGAATCAAAGAAGC 57.017 30.769 14.10 7.97 36.76 3.86
835 2458 8.033626 AGAAGAATCATTTGAATCAAAGAAGCC 58.966 33.333 14.10 3.87 36.76 4.35
836 2459 6.327934 AGAATCATTTGAATCAAAGAAGCCG 58.672 36.000 14.10 0.00 36.76 5.52
837 2460 5.902613 ATCATTTGAATCAAAGAAGCCGA 57.097 34.783 14.10 4.41 36.76 5.54
839 2462 6.271488 TCATTTGAATCAAAGAAGCCGATT 57.729 33.333 14.10 0.00 36.76 3.34
840 2463 6.690530 TCATTTGAATCAAAGAAGCCGATTT 58.309 32.000 14.10 0.00 36.76 2.17
841 2464 6.587226 TCATTTGAATCAAAGAAGCCGATTTG 59.413 34.615 14.10 3.85 36.76 2.32
842 2465 4.439305 TGAATCAAAGAAGCCGATTTGG 57.561 40.909 5.57 0.00 37.09 3.28
843 2466 3.193267 TGAATCAAAGAAGCCGATTTGGG 59.807 43.478 5.57 0.00 37.09 4.12
844 2467 1.544724 TCAAAGAAGCCGATTTGGGG 58.455 50.000 5.57 0.00 37.09 4.96
846 2469 1.202348 CAAAGAAGCCGATTTGGGGAC 59.798 52.381 0.00 0.00 38.63 4.46
847 2470 0.676782 AAGAAGCCGATTTGGGGACG 60.677 55.000 0.00 0.00 38.63 4.79
852 2475 2.189521 CGATTTGGGGACGGAGGG 59.810 66.667 0.00 0.00 0.00 4.30
854 2477 1.527370 GATTTGGGGACGGAGGGAG 59.473 63.158 0.00 0.00 0.00 4.30
955 2670 1.071471 CGTGTCACTTGGAAGGCCT 59.929 57.895 0.00 0.00 34.31 5.19
1068 2807 4.776322 TCCGGCGCCAAGGTGATG 62.776 66.667 28.98 7.02 0.00 3.07
1143 2882 1.074775 TTGTATCCTCCCCTCCCCG 60.075 63.158 0.00 0.00 0.00 5.73
1182 2921 4.531426 ATCGCCTCCTCCTCGGCT 62.531 66.667 0.00 0.00 44.11 5.52
1196 2935 2.188994 GGCTTCAGATGCGGCTCT 59.811 61.111 0.00 0.00 0.00 4.09
1298 3037 1.208165 GGGCCCTCTCTCCCAAGAAA 61.208 60.000 17.04 0.00 42.18 2.52
1364 3103 1.006102 CAGCGTCGAGGAAGTGGTT 60.006 57.895 9.75 0.00 0.00 3.67
1421 3160 2.555199 CTTACTGGTATGTGCTCTGCC 58.445 52.381 0.00 0.00 0.00 4.85
1422 3161 1.866015 TACTGGTATGTGCTCTGCCT 58.134 50.000 0.00 0.00 0.00 4.75
1423 3162 0.539051 ACTGGTATGTGCTCTGCCTC 59.461 55.000 0.00 0.00 0.00 4.70
1424 3163 0.829333 CTGGTATGTGCTCTGCCTCT 59.171 55.000 0.00 0.00 0.00 3.69
1425 3164 0.538584 TGGTATGTGCTCTGCCTCTG 59.461 55.000 0.00 0.00 0.00 3.35
1426 3165 0.813210 GGTATGTGCTCTGCCTCTGC 60.813 60.000 0.00 0.00 38.26 4.26
1427 3166 1.142531 TATGTGCTCTGCCTCTGCG 59.857 57.895 0.00 0.00 41.78 5.18
1438 3177 1.226974 CCTCTGCGGTATGGACACG 60.227 63.158 0.00 0.00 0.00 4.49
1457 3203 1.069022 CGGGATGATTTGCATTAGCGG 60.069 52.381 0.00 0.00 46.23 5.52
1458 3204 2.229792 GGGATGATTTGCATTAGCGGA 58.770 47.619 0.00 0.00 46.23 5.54
1464 3210 6.074142 GGATGATTTGCATTAGCGGATTTTTC 60.074 38.462 0.00 0.00 46.23 2.29
1465 3211 5.964758 TGATTTGCATTAGCGGATTTTTCT 58.035 33.333 0.00 0.00 46.23 2.52
1467 3213 6.531240 TGATTTGCATTAGCGGATTTTTCTTC 59.469 34.615 0.00 0.00 46.23 2.87
1468 3214 5.643379 TTGCATTAGCGGATTTTTCTTCT 57.357 34.783 0.00 0.00 46.23 2.85
1469 3215 5.643379 TGCATTAGCGGATTTTTCTTCTT 57.357 34.783 0.00 0.00 46.23 2.52
1470 3216 6.024552 TGCATTAGCGGATTTTTCTTCTTT 57.975 33.333 0.00 0.00 46.23 2.52
1471 3217 6.454795 TGCATTAGCGGATTTTTCTTCTTTT 58.545 32.000 0.00 0.00 46.23 2.27
1472 3218 6.586082 TGCATTAGCGGATTTTTCTTCTTTTC 59.414 34.615 0.00 0.00 46.23 2.29
1492 3238 3.466836 TCTCTTTTCAATGCGTGTGACT 58.533 40.909 0.00 0.00 0.00 3.41
1510 3256 4.876107 GTGACTGTCAAAGGAAACTGAAGA 59.124 41.667 12.81 0.00 42.68 2.87
1612 3358 2.398754 TCAGGGAACTTCACTCTGGA 57.601 50.000 0.00 0.00 40.21 3.86
1754 3501 5.910614 ACTTTCGTATACCATTGTACTCCC 58.089 41.667 0.00 0.00 0.00 4.30
1936 3687 6.780706 AAGACGTTGTTGTAGTTCAATAGG 57.219 37.500 0.00 0.00 38.38 2.57
1937 3688 6.092955 AGACGTTGTTGTAGTTCAATAGGA 57.907 37.500 0.00 0.00 38.38 2.94
1984 3735 6.594788 ACTGCAAAAGGAATTGTGATGTAT 57.405 33.333 0.00 0.00 32.80 2.29
1993 3811 7.918536 AGGAATTGTGATGTATCAGATATGC 57.081 36.000 0.00 0.00 37.51 3.14
1994 3812 7.455891 AGGAATTGTGATGTATCAGATATGCA 58.544 34.615 0.00 0.00 37.51 3.96
2000 3818 5.747675 GTGATGTATCAGATATGCATCTCGG 59.252 44.000 0.19 3.88 39.62 4.63
2102 3920 3.452755 TCTCATGGTATGTGGCTTACG 57.547 47.619 0.00 0.00 0.00 3.18
2335 4164 5.479306 TGAGACTAATGTTTCTGCACTACC 58.521 41.667 0.00 0.00 0.00 3.18
2514 4344 3.955771 TTCAAAGGTTGCACTACGTTC 57.044 42.857 0.00 0.00 0.00 3.95
2578 4408 3.444916 GAAGCGATCGGACAGTTATTCA 58.555 45.455 18.30 0.00 0.00 2.57
2608 4438 1.168714 GAAGCAAACGGGAAGCTGAT 58.831 50.000 0.00 0.00 38.86 2.90
2650 4480 9.173021 TGGAACAATTGATTATATCACGAAACT 57.827 29.630 13.59 0.00 34.92 2.66
2655 4485 8.539674 CAATTGATTATATCACGAAACTCACGA 58.460 33.333 0.00 0.00 39.39 4.35
2656 4486 7.445900 TTGATTATATCACGAAACTCACGAC 57.554 36.000 0.00 0.00 39.39 4.34
2668 4507 1.202325 ACTCACGACAACGCTTGTGTA 60.202 47.619 7.89 0.00 45.52 2.90
2682 4521 8.918658 CAACGCTTGTGTACTTAAGTAATTCTA 58.081 33.333 16.82 6.85 31.52 2.10
2773 4612 4.547671 AGGATCTTCCCACGATTCTCTAA 58.452 43.478 0.00 0.00 37.19 2.10
2776 4615 5.698545 GGATCTTCCCACGATTCTCTAATTG 59.301 44.000 0.00 0.00 33.30 2.32
2789 4628 8.293867 CGATTCTCTAATTGTTTTTACCAACCA 58.706 33.333 0.00 0.00 0.00 3.67
2822 4661 3.005554 AGTTCGGCAAGTGATGATTCAG 58.994 45.455 0.00 0.00 30.85 3.02
2844 4689 7.155328 TCAGTCACATCTTTCTTTCTTAGGAC 58.845 38.462 0.00 0.00 0.00 3.85
2911 4756 0.112995 AAATTGTCTCCAGCAGCCCA 59.887 50.000 0.00 0.00 0.00 5.36
3008 4853 1.224592 GACATCTTGGCCATCCCGT 59.775 57.895 6.09 1.40 35.87 5.28
3009 4854 1.077501 ACATCTTGGCCATCCCGTG 60.078 57.895 6.09 4.35 35.87 4.94
3021 4873 1.676006 CATCCCGTGCCATAAAACCTC 59.324 52.381 0.00 0.00 0.00 3.85
3080 4933 2.894126 TGTTCTCCCTCTCTCTGTCAAC 59.106 50.000 0.00 0.00 0.00 3.18
3103 4956 0.898320 CCAGGACCTGACGACTTCAT 59.102 55.000 23.77 0.00 32.44 2.57
3108 4961 2.611518 GACCTGACGACTTCATTGGAG 58.388 52.381 0.00 0.00 32.17 3.86
3131 4984 5.474876 AGCCTTTTTCAAGTCATGTTAGGAG 59.525 40.000 0.00 0.00 0.00 3.69
3132 4985 5.241728 GCCTTTTTCAAGTCATGTTAGGAGT 59.758 40.000 0.00 0.00 0.00 3.85
3133 4986 6.239036 GCCTTTTTCAAGTCATGTTAGGAGTT 60.239 38.462 0.00 0.00 0.00 3.01
3134 4987 7.040686 GCCTTTTTCAAGTCATGTTAGGAGTTA 60.041 37.037 0.00 0.00 0.00 2.24
3135 4988 8.507249 CCTTTTTCAAGTCATGTTAGGAGTTAG 58.493 37.037 0.00 0.00 0.00 2.34
3136 4989 7.979444 TTTTCAAGTCATGTTAGGAGTTAGG 57.021 36.000 0.00 0.00 0.00 2.69
3137 4990 6.928348 TTCAAGTCATGTTAGGAGTTAGGA 57.072 37.500 0.00 0.00 0.00 2.94
3138 4991 6.282199 TCAAGTCATGTTAGGAGTTAGGAC 57.718 41.667 0.00 0.00 0.00 3.85
3139 4992 5.778241 TCAAGTCATGTTAGGAGTTAGGACA 59.222 40.000 0.00 0.00 0.00 4.02
3140 4993 6.440647 TCAAGTCATGTTAGGAGTTAGGACAT 59.559 38.462 0.00 0.00 0.00 3.06
3141 4994 6.875972 AGTCATGTTAGGAGTTAGGACATT 57.124 37.500 0.00 0.00 0.00 2.71
3142 4995 7.973048 AGTCATGTTAGGAGTTAGGACATTA 57.027 36.000 0.00 0.00 0.00 1.90
3143 4996 8.554490 AGTCATGTTAGGAGTTAGGACATTAT 57.446 34.615 0.00 0.00 0.00 1.28
3144 4997 8.643324 AGTCATGTTAGGAGTTAGGACATTATC 58.357 37.037 0.00 0.00 0.00 1.75
3145 4998 8.421784 GTCATGTTAGGAGTTAGGACATTATCA 58.578 37.037 0.00 0.00 0.00 2.15
3146 4999 8.988060 TCATGTTAGGAGTTAGGACATTATCAA 58.012 33.333 0.00 0.00 0.00 2.57
3147 5000 9.265901 CATGTTAGGAGTTAGGACATTATCAAG 57.734 37.037 0.00 0.00 0.00 3.02
3148 5001 7.272978 TGTTAGGAGTTAGGACATTATCAAGC 58.727 38.462 0.00 0.00 0.00 4.01
3149 5002 7.125811 TGTTAGGAGTTAGGACATTATCAAGCT 59.874 37.037 0.00 0.00 0.00 3.74
3150 5003 5.923204 AGGAGTTAGGACATTATCAAGCTG 58.077 41.667 0.00 0.00 0.00 4.24
3151 5004 5.059833 GGAGTTAGGACATTATCAAGCTGG 58.940 45.833 0.00 0.00 0.00 4.85
3152 5005 5.163301 GGAGTTAGGACATTATCAAGCTGGA 60.163 44.000 0.00 0.00 0.00 3.86
3155 5008 4.785346 AGGACATTATCAAGCTGGACAT 57.215 40.909 0.00 0.00 0.00 3.06
3167 5020 2.184020 CTGGACATTGTGGCGAGGGA 62.184 60.000 0.00 0.00 26.39 4.20
3168 5021 1.450312 GGACATTGTGGCGAGGGAG 60.450 63.158 0.00 0.00 0.00 4.30
3177 5030 2.115291 GGCGAGGGAGGATTGCAAC 61.115 63.158 0.00 0.00 0.00 4.17
3192 5045 1.648467 GCAACGGCCTCATCAACTCC 61.648 60.000 0.00 0.00 0.00 3.85
3210 5063 0.816825 CCGCCAACATCATCCTCCTG 60.817 60.000 0.00 0.00 0.00 3.86
3282 5135 5.770162 TCTGATCCATAGCTTGTCGAAGATA 59.230 40.000 0.00 0.00 40.67 1.98
3319 5172 3.451526 GCAAATAGGCTTGCTTTGATCC 58.548 45.455 16.35 1.48 46.66 3.36
3326 5179 1.663135 GCTTGCTTTGATCCTCTCGAC 59.337 52.381 0.00 0.00 0.00 4.20
3328 5181 1.173913 TGCTTTGATCCTCTCGACGA 58.826 50.000 0.00 0.00 0.00 4.20
3342 5195 0.168348 CGACGATCGTCTCCAAGTGT 59.832 55.000 37.12 6.96 42.54 3.55
3394 5253 2.987413 TGACAATTTCATGCACGTCC 57.013 45.000 0.00 0.00 0.00 4.79
3402 5261 1.812922 CATGCACGTCCAGAGCCTC 60.813 63.158 0.00 0.00 35.49 4.70
3422 5281 2.103094 TCATTAAGGATCTCCACCGCAG 59.897 50.000 0.00 0.00 38.89 5.18
3436 5295 2.401766 CGCAGGAATGCTCCCACAC 61.402 63.158 0.00 0.00 43.64 3.82
3451 5310 2.498167 CCACACTCTTCCTCAAGTTGG 58.502 52.381 2.34 0.00 0.00 3.77
3458 5317 4.020662 ACTCTTCCTCAAGTTGGACATCTC 60.021 45.833 2.34 0.00 32.65 2.75
3492 5351 3.012518 CTCTGACAATTGGGCCTACTTG 58.987 50.000 16.30 16.30 0.00 3.16
3493 5352 1.474077 CTGACAATTGGGCCTACTTGC 59.526 52.381 17.57 11.49 0.00 4.01
3496 5355 1.355720 ACAATTGGGCCTACTTGCTCT 59.644 47.619 17.57 0.00 31.16 4.09
3504 5363 2.764572 GGCCTACTTGCTCTAGGTGTTA 59.235 50.000 0.00 0.00 34.26 2.41
3524 5383 0.321564 CATCTCTTGGTGTTCGGCCA 60.322 55.000 2.24 0.00 0.00 5.36
3554 5413 0.543277 GACTGGATCTGCATGTCCCA 59.457 55.000 13.28 6.17 33.45 4.37
3556 5415 0.253894 CTGGATCTGCATGTCCCACA 59.746 55.000 13.28 0.00 33.45 4.17
3561 5420 2.336945 TCTGCATGTCCCACATCATC 57.663 50.000 0.00 0.00 36.53 2.92
3568 5427 0.761802 GTCCCACATCATCCTCCTCC 59.238 60.000 0.00 0.00 0.00 4.30
3570 5429 0.763652 CCCACATCATCCTCCTCCAG 59.236 60.000 0.00 0.00 0.00 3.86
3571 5430 0.763652 CCACATCATCCTCCTCCAGG 59.236 60.000 0.00 0.00 45.15 4.45
3572 5431 0.763652 CACATCATCCTCCTCCAGGG 59.236 60.000 0.00 0.00 43.67 4.45
3585 5444 1.211457 CTCCAGGGTCCTTCTCAATGG 59.789 57.143 0.00 0.00 0.00 3.16
3586 5445 1.203428 TCCAGGGTCCTTCTCAATGGA 60.203 52.381 0.00 0.00 33.11 3.41
3592 5451 3.348119 GGTCCTTCTCAATGGAAACCTC 58.652 50.000 0.00 0.00 33.72 3.85
3610 5469 4.525949 GGACTACCCTTCCGCCGC 62.526 72.222 0.00 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.814097 GCTAACCGGCACCCATCATATT 60.814 50.000 0.00 0.00 0.00 1.28
34 35 2.168521 CCTCATACGGGCCCTATATGTG 59.831 54.545 28.94 26.75 0.00 3.21
111 112 4.827789 ACTCCCTAAATGCTCCCTATACA 58.172 43.478 0.00 0.00 0.00 2.29
123 124 7.133483 ACAATCTACAGTAGGACTCCCTAAAT 58.867 38.462 7.79 0.00 46.06 1.40
127 128 4.230964 AGACAATCTACAGTAGGACTCCCT 59.769 45.833 7.79 0.00 46.62 4.20
136 137 4.945543 TCACCGCTTAGACAATCTACAGTA 59.054 41.667 0.00 0.00 0.00 2.74
146 147 0.320421 GGCAAGTCACCGCTTAGACA 60.320 55.000 0.00 0.00 37.23 3.41
147 148 0.037232 AGGCAAGTCACCGCTTAGAC 60.037 55.000 0.00 0.00 35.02 2.59
244 250 9.891828 GTGACATAGTTCAATAATTCAACAACA 57.108 29.630 0.00 0.00 0.00 3.33
384 400 8.729756 TGTGTTCTACTCATCAACAAAATATGG 58.270 33.333 0.00 0.00 31.95 2.74
422 441 3.804036 TCGGTCATGTTCAGAGTGTTTT 58.196 40.909 0.00 0.00 0.00 2.43
423 442 3.469008 TCGGTCATGTTCAGAGTGTTT 57.531 42.857 0.00 0.00 0.00 2.83
424 443 3.131396 GTTCGGTCATGTTCAGAGTGTT 58.869 45.455 0.00 0.00 0.00 3.32
425 444 2.365617 AGTTCGGTCATGTTCAGAGTGT 59.634 45.455 0.00 0.00 0.00 3.55
469 515 1.079503 CTCTTACGCAAACTCTGGGC 58.920 55.000 0.00 0.00 41.66 5.36
470 516 1.726853 CCTCTTACGCAAACTCTGGG 58.273 55.000 0.00 0.00 43.53 4.45
480 526 1.226888 CGGTACCAGCCTCTTACGC 60.227 63.158 13.54 0.00 0.00 4.42
494 540 2.286872 CTTCTACTTCTCGCTCCGGTA 58.713 52.381 0.00 0.00 0.00 4.02
512 559 3.350833 GGAATCACTCAATGCTCCACTT 58.649 45.455 0.00 0.00 32.72 3.16
517 2140 1.667724 CGTGGGAATCACTCAATGCTC 59.332 52.381 0.00 0.00 43.94 4.26
519 2142 1.667724 CTCGTGGGAATCACTCAATGC 59.332 52.381 0.00 0.00 43.94 3.56
550 2173 9.859692 GGCTAATTATCGTTGATTTAGTACAAC 57.140 33.333 0.00 0.00 41.67 3.32
552 2175 9.472361 GAGGCTAATTATCGTTGATTTAGTACA 57.528 33.333 0.00 0.00 0.00 2.90
553 2176 9.694137 AGAGGCTAATTATCGTTGATTTAGTAC 57.306 33.333 0.00 0.00 0.00 2.73
555 2178 9.614792 AAAGAGGCTAATTATCGTTGATTTAGT 57.385 29.630 0.00 0.00 0.00 2.24
557 2180 9.607988 TCAAAGAGGCTAATTATCGTTGATTTA 57.392 29.630 10.14 0.00 36.81 1.40
558 2181 8.506168 TCAAAGAGGCTAATTATCGTTGATTT 57.494 30.769 10.14 0.00 36.81 2.17
560 2183 8.682936 AATCAAAGAGGCTAATTATCGTTGAT 57.317 30.769 16.45 16.45 46.76 2.57
561 2184 7.768582 TGAATCAAAGAGGCTAATTATCGTTGA 59.231 33.333 14.25 14.25 42.65 3.18
562 2185 7.919690 TGAATCAAAGAGGCTAATTATCGTTG 58.080 34.615 6.80 6.80 34.88 4.10
563 2186 8.682936 ATGAATCAAAGAGGCTAATTATCGTT 57.317 30.769 0.00 0.00 0.00 3.85
564 2187 9.429359 CTATGAATCAAAGAGGCTAATTATCGT 57.571 33.333 0.00 0.00 0.00 3.73
565 2188 8.877779 CCTATGAATCAAAGAGGCTAATTATCG 58.122 37.037 0.00 0.00 0.00 2.92
566 2189 9.950496 TCCTATGAATCAAAGAGGCTAATTATC 57.050 33.333 4.80 0.00 0.00 1.75
569 2192 9.652114 AAATCCTATGAATCAAAGAGGCTAATT 57.348 29.630 4.80 0.00 0.00 1.40
570 2193 9.652114 AAAATCCTATGAATCAAAGAGGCTAAT 57.348 29.630 4.80 0.00 0.00 1.73
571 2194 9.125026 GAAAATCCTATGAATCAAAGAGGCTAA 57.875 33.333 4.80 0.00 0.00 3.09
572 2195 8.274322 TGAAAATCCTATGAATCAAAGAGGCTA 58.726 33.333 4.80 0.00 0.00 3.93
573 2196 7.121382 TGAAAATCCTATGAATCAAAGAGGCT 58.879 34.615 4.80 0.00 0.00 4.58
574 2197 7.338800 TGAAAATCCTATGAATCAAAGAGGC 57.661 36.000 4.80 0.00 0.00 4.70
579 2202 9.775854 TGCTTTTTGAAAATCCTATGAATCAAA 57.224 25.926 0.00 0.00 33.53 2.69
580 2203 9.426837 CTGCTTTTTGAAAATCCTATGAATCAA 57.573 29.630 0.00 0.00 0.00 2.57
581 2204 8.036575 CCTGCTTTTTGAAAATCCTATGAATCA 58.963 33.333 0.00 0.00 0.00 2.57
582 2205 8.253113 TCCTGCTTTTTGAAAATCCTATGAATC 58.747 33.333 0.00 0.00 0.00 2.52
583 2206 8.137745 TCCTGCTTTTTGAAAATCCTATGAAT 57.862 30.769 0.00 0.00 0.00 2.57
584 2207 7.537596 TCCTGCTTTTTGAAAATCCTATGAA 57.462 32.000 0.00 0.00 0.00 2.57
585 2208 7.537596 TTCCTGCTTTTTGAAAATCCTATGA 57.462 32.000 0.00 0.00 0.00 2.15
586 2209 8.662141 CAATTCCTGCTTTTTGAAAATCCTATG 58.338 33.333 0.00 0.00 0.00 2.23
587 2210 7.825761 CCAATTCCTGCTTTTTGAAAATCCTAT 59.174 33.333 0.00 0.00 0.00 2.57
588 2211 7.160726 CCAATTCCTGCTTTTTGAAAATCCTA 58.839 34.615 0.00 0.00 0.00 2.94
589 2212 5.999600 CCAATTCCTGCTTTTTGAAAATCCT 59.000 36.000 0.00 0.00 0.00 3.24
590 2213 5.181811 CCCAATTCCTGCTTTTTGAAAATCC 59.818 40.000 0.00 0.00 0.00 3.01
591 2214 5.997129 TCCCAATTCCTGCTTTTTGAAAATC 59.003 36.000 0.00 0.00 0.00 2.17
592 2215 5.939447 TCCCAATTCCTGCTTTTTGAAAAT 58.061 33.333 0.00 0.00 0.00 1.82
593 2216 5.365021 TCCCAATTCCTGCTTTTTGAAAA 57.635 34.783 0.00 0.00 0.00 2.29
594 2217 5.365021 TTCCCAATTCCTGCTTTTTGAAA 57.635 34.783 0.00 0.00 0.00 2.69
595 2218 5.365021 TTTCCCAATTCCTGCTTTTTGAA 57.635 34.783 0.00 0.00 0.00 2.69
596 2219 5.122519 GTTTTCCCAATTCCTGCTTTTTGA 58.877 37.500 0.00 0.00 0.00 2.69
597 2220 4.880696 TGTTTTCCCAATTCCTGCTTTTTG 59.119 37.500 0.00 0.00 0.00 2.44
598 2221 5.109500 TGTTTTCCCAATTCCTGCTTTTT 57.891 34.783 0.00 0.00 0.00 1.94
599 2222 4.769345 TGTTTTCCCAATTCCTGCTTTT 57.231 36.364 0.00 0.00 0.00 2.27
600 2223 4.505390 CCATGTTTTCCCAATTCCTGCTTT 60.505 41.667 0.00 0.00 0.00 3.51
601 2224 3.008266 CCATGTTTTCCCAATTCCTGCTT 59.992 43.478 0.00 0.00 0.00 3.91
602 2225 2.568509 CCATGTTTTCCCAATTCCTGCT 59.431 45.455 0.00 0.00 0.00 4.24
603 2226 2.355007 CCCATGTTTTCCCAATTCCTGC 60.355 50.000 0.00 0.00 0.00 4.85
604 2227 3.172339 TCCCATGTTTTCCCAATTCCTG 58.828 45.455 0.00 0.00 0.00 3.86
605 2228 3.558608 TCCCATGTTTTCCCAATTCCT 57.441 42.857 0.00 0.00 0.00 3.36
606 2229 4.842531 AATCCCATGTTTTCCCAATTCC 57.157 40.909 0.00 0.00 0.00 3.01
607 2230 6.381133 ACTCTAATCCCATGTTTTCCCAATTC 59.619 38.462 0.00 0.00 0.00 2.17
608 2231 6.155049 CACTCTAATCCCATGTTTTCCCAATT 59.845 38.462 0.00 0.00 0.00 2.32
609 2232 5.658190 CACTCTAATCCCATGTTTTCCCAAT 59.342 40.000 0.00 0.00 0.00 3.16
610 2233 5.016173 CACTCTAATCCCATGTTTTCCCAA 58.984 41.667 0.00 0.00 0.00 4.12
611 2234 4.569653 CCACTCTAATCCCATGTTTTCCCA 60.570 45.833 0.00 0.00 0.00 4.37
612 2235 3.954258 CCACTCTAATCCCATGTTTTCCC 59.046 47.826 0.00 0.00 0.00 3.97
613 2236 3.381590 GCCACTCTAATCCCATGTTTTCC 59.618 47.826 0.00 0.00 0.00 3.13
614 2237 4.016444 TGCCACTCTAATCCCATGTTTTC 58.984 43.478 0.00 0.00 0.00 2.29
615 2238 4.046286 TGCCACTCTAATCCCATGTTTT 57.954 40.909 0.00 0.00 0.00 2.43
616 2239 3.737559 TGCCACTCTAATCCCATGTTT 57.262 42.857 0.00 0.00 0.00 2.83
617 2240 3.053395 ACATGCCACTCTAATCCCATGTT 60.053 43.478 0.00 0.00 39.97 2.71
618 2241 2.511218 ACATGCCACTCTAATCCCATGT 59.489 45.455 0.00 0.00 38.62 3.21
619 2242 3.144506 GACATGCCACTCTAATCCCATG 58.855 50.000 0.00 0.00 36.90 3.66
620 2243 2.779430 TGACATGCCACTCTAATCCCAT 59.221 45.455 0.00 0.00 0.00 4.00
621 2244 2.195727 TGACATGCCACTCTAATCCCA 58.804 47.619 0.00 0.00 0.00 4.37
622 2245 3.181451 TGATGACATGCCACTCTAATCCC 60.181 47.826 0.00 0.00 0.00 3.85
623 2246 4.077300 TGATGACATGCCACTCTAATCC 57.923 45.455 0.00 0.00 0.00 3.01
624 2247 5.608676 CATGATGACATGCCACTCTAATC 57.391 43.478 0.00 0.00 45.51 1.75
633 2256 7.040617 ATTCTGTAGAATTCATGATGACATGCC 60.041 37.037 8.44 0.00 42.66 4.40
634 2257 7.872881 ATTCTGTAGAATTCATGATGACATGC 58.127 34.615 8.44 0.00 42.66 4.06
653 2276 9.897744 CACAATCAAACACTTATACAATTCTGT 57.102 29.630 0.00 0.00 39.75 3.41
654 2277 8.853345 GCACAATCAAACACTTATACAATTCTG 58.147 33.333 0.00 0.00 0.00 3.02
655 2278 8.575589 TGCACAATCAAACACTTATACAATTCT 58.424 29.630 0.00 0.00 0.00 2.40
656 2279 8.741101 TGCACAATCAAACACTTATACAATTC 57.259 30.769 0.00 0.00 0.00 2.17
659 2282 8.458052 CCTATGCACAATCAAACACTTATACAA 58.542 33.333 0.00 0.00 0.00 2.41
660 2283 7.826744 TCCTATGCACAATCAAACACTTATACA 59.173 33.333 0.00 0.00 0.00 2.29
661 2284 8.208718 TCCTATGCACAATCAAACACTTATAC 57.791 34.615 0.00 0.00 0.00 1.47
662 2285 8.800370 TTCCTATGCACAATCAAACACTTATA 57.200 30.769 0.00 0.00 0.00 0.98
663 2286 7.701539 TTCCTATGCACAATCAAACACTTAT 57.298 32.000 0.00 0.00 0.00 1.73
664 2287 7.517614 TTTCCTATGCACAATCAAACACTTA 57.482 32.000 0.00 0.00 0.00 2.24
665 2288 6.403866 TTTCCTATGCACAATCAAACACTT 57.596 33.333 0.00 0.00 0.00 3.16
666 2289 6.403866 TTTTCCTATGCACAATCAAACACT 57.596 33.333 0.00 0.00 0.00 3.55
667 2290 6.345723 CGTTTTTCCTATGCACAATCAAACAC 60.346 38.462 0.00 0.00 0.00 3.32
668 2291 5.689514 CGTTTTTCCTATGCACAATCAAACA 59.310 36.000 0.00 0.00 0.00 2.83
669 2292 5.689961 ACGTTTTTCCTATGCACAATCAAAC 59.310 36.000 0.00 0.00 0.00 2.93
670 2293 5.837437 ACGTTTTTCCTATGCACAATCAAA 58.163 33.333 0.00 0.00 0.00 2.69
671 2294 5.446143 ACGTTTTTCCTATGCACAATCAA 57.554 34.783 0.00 0.00 0.00 2.57
672 2295 5.123186 CCTACGTTTTTCCTATGCACAATCA 59.877 40.000 0.00 0.00 0.00 2.57
673 2296 5.353123 TCCTACGTTTTTCCTATGCACAATC 59.647 40.000 0.00 0.00 0.00 2.67
674 2297 5.250200 TCCTACGTTTTTCCTATGCACAAT 58.750 37.500 0.00 0.00 0.00 2.71
675 2298 4.643463 TCCTACGTTTTTCCTATGCACAA 58.357 39.130 0.00 0.00 0.00 3.33
676 2299 4.274602 TCCTACGTTTTTCCTATGCACA 57.725 40.909 0.00 0.00 0.00 4.57
677 2300 5.585047 AGAATCCTACGTTTTTCCTATGCAC 59.415 40.000 0.00 0.00 0.00 4.57
678 2301 5.741011 AGAATCCTACGTTTTTCCTATGCA 58.259 37.500 0.00 0.00 0.00 3.96
679 2302 6.679327 AAGAATCCTACGTTTTTCCTATGC 57.321 37.500 0.00 0.00 0.00 3.14
680 2303 8.263940 TGAAAGAATCCTACGTTTTTCCTATG 57.736 34.615 0.00 0.00 0.00 2.23
681 2304 8.857694 TTGAAAGAATCCTACGTTTTTCCTAT 57.142 30.769 0.00 0.00 0.00 2.57
682 2305 8.680039 TTTGAAAGAATCCTACGTTTTTCCTA 57.320 30.769 0.00 0.00 0.00 2.94
683 2306 7.501225 TCTTTGAAAGAATCCTACGTTTTTCCT 59.499 33.333 4.94 0.00 33.83 3.36
684 2307 7.645402 TCTTTGAAAGAATCCTACGTTTTTCC 58.355 34.615 4.94 0.00 33.83 3.13
685 2308 7.803659 CCTCTTTGAAAGAATCCTACGTTTTTC 59.196 37.037 9.15 0.00 37.02 2.29
686 2309 7.284716 ACCTCTTTGAAAGAATCCTACGTTTTT 59.715 33.333 9.15 0.00 37.02 1.94
687 2310 6.771267 ACCTCTTTGAAAGAATCCTACGTTTT 59.229 34.615 9.15 0.00 37.02 2.43
688 2311 6.296803 ACCTCTTTGAAAGAATCCTACGTTT 58.703 36.000 9.15 0.00 37.02 3.60
689 2312 5.866207 ACCTCTTTGAAAGAATCCTACGTT 58.134 37.500 9.15 0.00 37.02 3.99
690 2313 5.485209 ACCTCTTTGAAAGAATCCTACGT 57.515 39.130 9.15 0.00 37.02 3.57
691 2314 6.426937 TCAAACCTCTTTGAAAGAATCCTACG 59.573 38.462 9.15 0.00 42.34 3.51
692 2315 7.445707 ACTCAAACCTCTTTGAAAGAATCCTAC 59.554 37.037 9.15 0.00 44.18 3.18
693 2316 7.445402 CACTCAAACCTCTTTGAAAGAATCCTA 59.555 37.037 9.15 0.00 44.18 2.94
694 2317 6.264067 CACTCAAACCTCTTTGAAAGAATCCT 59.736 38.462 9.15 0.00 44.18 3.24
695 2318 6.442112 CACTCAAACCTCTTTGAAAGAATCC 58.558 40.000 9.15 0.00 44.18 3.01
696 2319 6.263168 TCCACTCAAACCTCTTTGAAAGAATC 59.737 38.462 9.15 0.00 44.18 2.52
697 2320 6.129179 TCCACTCAAACCTCTTTGAAAGAAT 58.871 36.000 9.15 0.00 44.18 2.40
698 2321 5.505780 TCCACTCAAACCTCTTTGAAAGAA 58.494 37.500 9.15 0.00 44.18 2.52
699 2322 5.110814 TCCACTCAAACCTCTTTGAAAGA 57.889 39.130 7.49 7.49 44.18 2.52
700 2323 5.532406 TCATCCACTCAAACCTCTTTGAAAG 59.468 40.000 0.00 0.00 44.18 2.62
701 2324 5.445069 TCATCCACTCAAACCTCTTTGAAA 58.555 37.500 0.00 0.00 44.18 2.69
702 2325 5.047566 TCATCCACTCAAACCTCTTTGAA 57.952 39.130 0.00 0.00 44.18 2.69
703 2326 4.705110 TCATCCACTCAAACCTCTTTGA 57.295 40.909 0.00 0.00 42.93 2.69
704 2327 5.772825 TTTCATCCACTCAAACCTCTTTG 57.227 39.130 0.00 0.00 38.56 2.77
705 2328 6.790232 TTTTTCATCCACTCAAACCTCTTT 57.210 33.333 0.00 0.00 0.00 2.52
728 2351 9.412460 TCATTTGCACTAGATTTCATAGGATTT 57.588 29.630 0.00 0.00 0.00 2.17
729 2352 8.985315 TCATTTGCACTAGATTTCATAGGATT 57.015 30.769 0.00 0.00 0.00 3.01
730 2353 8.985315 TTCATTTGCACTAGATTTCATAGGAT 57.015 30.769 0.00 0.00 0.00 3.24
731 2354 8.985315 ATTCATTTGCACTAGATTTCATAGGA 57.015 30.769 0.00 0.00 0.00 2.94
732 2355 8.295288 GGATTCATTTGCACTAGATTTCATAGG 58.705 37.037 0.00 0.00 0.00 2.57
733 2356 9.064706 AGGATTCATTTGCACTAGATTTCATAG 57.935 33.333 0.00 0.00 0.00 2.23
734 2357 8.985315 AGGATTCATTTGCACTAGATTTCATA 57.015 30.769 0.00 0.00 0.00 2.15
735 2358 7.893124 AGGATTCATTTGCACTAGATTTCAT 57.107 32.000 0.00 0.00 0.00 2.57
736 2359 8.843262 CATAGGATTCATTTGCACTAGATTTCA 58.157 33.333 0.00 0.00 0.00 2.69
737 2360 9.060347 TCATAGGATTCATTTGCACTAGATTTC 57.940 33.333 0.00 0.00 0.00 2.17
738 2361 8.985315 TCATAGGATTCATTTGCACTAGATTT 57.015 30.769 0.00 0.00 0.00 2.17
739 2362 8.985315 TTCATAGGATTCATTTGCACTAGATT 57.015 30.769 0.00 0.00 0.00 2.40
740 2363 8.985315 TTTCATAGGATTCATTTGCACTAGAT 57.015 30.769 0.00 0.00 0.00 1.98
741 2364 8.806429 TTTTCATAGGATTCATTTGCACTAGA 57.194 30.769 0.00 0.00 0.00 2.43
767 2390 9.675464 TTCGTAGGATTGTAAACAATAGGAATT 57.325 29.630 8.27 0.00 45.72 2.17
769 2392 9.321562 GATTCGTAGGATTGTAAACAATAGGAA 57.678 33.333 8.27 10.28 45.72 3.36
771 2394 8.657074 TGATTCGTAGGATTGTAAACAATAGG 57.343 34.615 8.27 0.48 45.72 2.57
775 2398 8.155821 TGTTTGATTCGTAGGATTGTAAACAA 57.844 30.769 0.00 0.00 40.51 2.83
776 2399 7.731882 TGTTTGATTCGTAGGATTGTAAACA 57.268 32.000 0.00 0.00 34.36 2.83
777 2400 7.536281 GGTTGTTTGATTCGTAGGATTGTAAAC 59.464 37.037 0.00 0.00 0.00 2.01
779 2402 6.938030 AGGTTGTTTGATTCGTAGGATTGTAA 59.062 34.615 0.00 0.00 0.00 2.41
782 2405 5.880054 AGGTTGTTTGATTCGTAGGATTG 57.120 39.130 0.00 0.00 0.00 2.67
785 2408 4.022068 ACGTAGGTTGTTTGATTCGTAGGA 60.022 41.667 0.00 0.00 0.00 2.94
786 2409 4.240096 ACGTAGGTTGTTTGATTCGTAGG 58.760 43.478 0.00 0.00 0.00 3.18
787 2410 6.317088 TCTACGTAGGTTGTTTGATTCGTAG 58.683 40.000 22.01 12.91 45.59 3.51
788 2411 6.252967 TCTACGTAGGTTGTTTGATTCGTA 57.747 37.500 22.01 0.00 0.00 3.43
789 2412 5.125100 TCTACGTAGGTTGTTTGATTCGT 57.875 39.130 22.01 0.00 0.00 3.85
790 2413 5.860182 TCTTCTACGTAGGTTGTTTGATTCG 59.140 40.000 22.01 0.00 0.00 3.34
792 2415 7.876068 TGATTCTTCTACGTAGGTTGTTTGATT 59.124 33.333 22.01 6.97 0.00 2.57
793 2416 7.383687 TGATTCTTCTACGTAGGTTGTTTGAT 58.616 34.615 22.01 6.38 0.00 2.57
794 2417 6.751157 TGATTCTTCTACGTAGGTTGTTTGA 58.249 36.000 22.01 7.60 0.00 2.69
796 2419 8.504005 CAAATGATTCTTCTACGTAGGTTGTTT 58.496 33.333 22.01 9.81 0.00 2.83
797 2420 7.876068 TCAAATGATTCTTCTACGTAGGTTGTT 59.124 33.333 22.01 5.47 0.00 2.83
798 2421 7.383687 TCAAATGATTCTTCTACGTAGGTTGT 58.616 34.615 22.01 5.55 0.00 3.32
799 2422 7.827819 TCAAATGATTCTTCTACGTAGGTTG 57.172 36.000 22.01 12.27 0.00 3.77
802 2425 8.648557 TGATTCAAATGATTCTTCTACGTAGG 57.351 34.615 22.01 7.59 0.00 3.18
805 2428 9.219603 TCTTTGATTCAAATGATTCTTCTACGT 57.780 29.630 12.04 0.00 32.70 3.57
809 2432 8.033626 GGCTTCTTTGATTCAAATGATTCTTCT 58.966 33.333 12.04 0.00 32.70 2.85
810 2433 7.008992 CGGCTTCTTTGATTCAAATGATTCTTC 59.991 37.037 12.04 0.00 32.70 2.87
812 2435 6.151648 TCGGCTTCTTTGATTCAAATGATTCT 59.848 34.615 12.04 0.00 32.70 2.40
813 2436 6.324819 TCGGCTTCTTTGATTCAAATGATTC 58.675 36.000 12.04 6.99 32.70 2.52
815 2438 5.902613 TCGGCTTCTTTGATTCAAATGAT 57.097 34.783 12.04 0.00 32.70 2.45
816 2439 5.902613 ATCGGCTTCTTTGATTCAAATGA 57.097 34.783 12.04 9.09 32.70 2.57
817 2440 6.183360 CCAAATCGGCTTCTTTGATTCAAATG 60.183 38.462 12.04 7.14 34.93 2.32
818 2441 5.870978 CCAAATCGGCTTCTTTGATTCAAAT 59.129 36.000 12.04 0.00 34.93 2.32
819 2442 5.229423 CCAAATCGGCTTCTTTGATTCAAA 58.771 37.500 11.19 11.19 34.93 2.69
822 2445 3.429410 CCCCAAATCGGCTTCTTTGATTC 60.429 47.826 6.89 0.00 34.93 2.52
823 2446 2.497273 CCCCAAATCGGCTTCTTTGATT 59.503 45.455 6.89 0.00 34.93 2.57
825 2448 1.074727 TCCCCAAATCGGCTTCTTTGA 59.925 47.619 6.89 0.00 34.93 2.69
827 2450 1.545841 GTCCCCAAATCGGCTTCTTT 58.454 50.000 0.00 0.00 0.00 2.52
828 2451 0.676782 CGTCCCCAAATCGGCTTCTT 60.677 55.000 0.00 0.00 0.00 2.52
829 2452 1.078426 CGTCCCCAAATCGGCTTCT 60.078 57.895 0.00 0.00 0.00 2.85
830 2453 2.112815 CCGTCCCCAAATCGGCTTC 61.113 63.158 0.00 0.00 37.90 3.86
831 2454 2.045340 CCGTCCCCAAATCGGCTT 60.045 61.111 0.00 0.00 37.90 4.35
832 2455 3.006728 TCCGTCCCCAAATCGGCT 61.007 61.111 0.00 0.00 43.35 5.52
833 2456 2.513897 CTCCGTCCCCAAATCGGC 60.514 66.667 0.00 0.00 43.35 5.54
834 2457 2.189521 CCTCCGTCCCCAAATCGG 59.810 66.667 0.00 0.00 44.76 4.18
835 2458 2.189521 CCCTCCGTCCCCAAATCG 59.810 66.667 0.00 0.00 0.00 3.34
836 2459 1.272554 ACTCCCTCCGTCCCCAAATC 61.273 60.000 0.00 0.00 0.00 2.17
837 2460 0.043637 TACTCCCTCCGTCCCCAAAT 59.956 55.000 0.00 0.00 0.00 2.32
839 2462 0.398098 GATACTCCCTCCGTCCCCAA 60.398 60.000 0.00 0.00 0.00 4.12
840 2463 1.232216 GATACTCCCTCCGTCCCCA 59.768 63.158 0.00 0.00 0.00 4.96
841 2464 0.540133 GAGATACTCCCTCCGTCCCC 60.540 65.000 0.00 0.00 0.00 4.81
842 2465 0.540133 GGAGATACTCCCTCCGTCCC 60.540 65.000 6.54 0.00 44.36 4.46
843 2466 3.039452 GGAGATACTCCCTCCGTCC 57.961 63.158 6.54 0.00 44.36 4.79
852 2475 4.033358 CGCACACATCTTTTGGAGATACTC 59.967 45.833 0.00 0.00 43.32 2.59
854 2477 3.063997 CCGCACACATCTTTTGGAGATAC 59.936 47.826 0.00 0.00 43.32 2.24
861 2549 1.442520 CCGCCGCACACATCTTTTG 60.443 57.895 0.00 0.00 0.00 2.44
904 2593 0.878523 TTTGCTCCGTTGTCTCCGTG 60.879 55.000 0.00 0.00 0.00 4.94
983 2698 1.009829 CATTAGCGGCTCACAAGGAC 58.990 55.000 5.39 0.00 0.00 3.85
1068 2807 0.244994 TTGAGAGAGGTTCAGCGCTC 59.755 55.000 7.13 0.00 0.00 5.03
1143 2882 0.172352 CTCTGCAGGAAGACGGAGAC 59.828 60.000 15.13 0.00 41.03 3.36
1298 3037 0.886490 CTTCGACAGCTTGCCTTGGT 60.886 55.000 0.00 0.00 0.00 3.67
1364 3103 0.106708 AGTCGGCTTCAAGAACAGCA 59.893 50.000 0.00 0.00 37.81 4.41
1421 3160 1.226974 CCGTGTCCATACCGCAGAG 60.227 63.158 0.00 0.00 0.00 3.35
1422 3161 2.717044 CCCGTGTCCATACCGCAGA 61.717 63.158 0.00 0.00 0.00 4.26
1423 3162 2.028125 ATCCCGTGTCCATACCGCAG 62.028 60.000 0.00 0.00 0.00 5.18
1424 3163 2.061578 ATCCCGTGTCCATACCGCA 61.062 57.895 0.00 0.00 0.00 5.69
1425 3164 1.594293 CATCCCGTGTCCATACCGC 60.594 63.158 0.00 0.00 0.00 5.68
1426 3165 0.679505 ATCATCCCGTGTCCATACCG 59.320 55.000 0.00 0.00 0.00 4.02
1427 3166 2.878406 CAAATCATCCCGTGTCCATACC 59.122 50.000 0.00 0.00 0.00 2.73
1438 3177 2.229792 TCCGCTAATGCAAATCATCCC 58.770 47.619 0.00 0.00 39.64 3.85
1464 3210 5.973565 ACACGCATTGAAAAGAGAAAAGAAG 59.026 36.000 0.00 0.00 0.00 2.85
1465 3211 5.743398 CACACGCATTGAAAAGAGAAAAGAA 59.257 36.000 0.00 0.00 0.00 2.52
1467 3213 5.172053 GTCACACGCATTGAAAAGAGAAAAG 59.828 40.000 0.00 0.00 0.00 2.27
1468 3214 5.034152 GTCACACGCATTGAAAAGAGAAAA 58.966 37.500 0.00 0.00 0.00 2.29
1469 3215 4.335315 AGTCACACGCATTGAAAAGAGAAA 59.665 37.500 0.00 0.00 0.00 2.52
1470 3216 3.876914 AGTCACACGCATTGAAAAGAGAA 59.123 39.130 0.00 0.00 0.00 2.87
1471 3217 3.248363 CAGTCACACGCATTGAAAAGAGA 59.752 43.478 0.00 0.00 0.00 3.10
1472 3218 3.002656 ACAGTCACACGCATTGAAAAGAG 59.997 43.478 0.00 0.00 0.00 2.85
1492 3238 6.834168 AACTTTCTTCAGTTTCCTTTGACA 57.166 33.333 0.00 0.00 32.81 3.58
1510 3256 6.514947 TGCTCTGAATGTGCAAATTAACTTT 58.485 32.000 0.95 0.00 41.46 2.66
1612 3358 7.578310 AACAAGCAATCTTCAGCATATATGT 57.422 32.000 14.14 0.00 0.00 2.29
1754 3501 5.311121 TCTGGGAGTATCTAGACCTTCCTAG 59.689 48.000 18.19 18.19 37.94 3.02
1925 3676 7.559170 GGTACTACCTCTGTTCCTATTGAACTA 59.441 40.741 6.62 0.00 43.49 2.24
1926 3677 6.380560 GGTACTACCTCTGTTCCTATTGAACT 59.619 42.308 6.62 0.00 43.49 3.01
1927 3678 6.154021 TGGTACTACCTCTGTTCCTATTGAAC 59.846 42.308 6.79 0.00 45.24 3.18
1928 3679 6.258354 TGGTACTACCTCTGTTCCTATTGAA 58.742 40.000 6.79 0.00 39.58 2.69
1929 3680 5.834460 TGGTACTACCTCTGTTCCTATTGA 58.166 41.667 6.79 0.00 39.58 2.57
1930 3681 5.657302 ACTGGTACTACCTCTGTTCCTATTG 59.343 44.000 6.79 0.00 39.58 1.90
1931 3682 5.840081 ACTGGTACTACCTCTGTTCCTATT 58.160 41.667 6.79 0.00 39.58 1.73
1932 3683 5.469210 ACTGGTACTACCTCTGTTCCTAT 57.531 43.478 6.79 0.00 39.58 2.57
1933 3684 4.942363 ACTGGTACTACCTCTGTTCCTA 57.058 45.455 6.79 0.00 39.58 2.94
1934 3685 3.829728 ACTGGTACTACCTCTGTTCCT 57.170 47.619 6.79 0.00 39.58 3.36
1935 3686 5.015515 AGTAACTGGTACTACCTCTGTTCC 58.984 45.833 2.96 1.68 41.51 3.62
1936 3687 7.693969 TTAGTAACTGGTACTACCTCTGTTC 57.306 40.000 11.99 4.68 43.59 3.18
1937 3688 7.727634 AGTTTAGTAACTGGTACTACCTCTGTT 59.272 37.037 11.99 10.56 43.59 3.16
1984 3735 5.022282 TCAAAACCGAGATGCATATCTGA 57.978 39.130 18.07 11.90 43.63 3.27
1993 3811 5.465390 TGACAAGTACTTCAAAACCGAGATG 59.535 40.000 4.77 0.00 0.00 2.90
1994 3812 5.607477 TGACAAGTACTTCAAAACCGAGAT 58.393 37.500 4.77 0.00 0.00 2.75
2000 3818 6.751888 AGCACAAATGACAAGTACTTCAAAAC 59.248 34.615 4.77 0.00 0.00 2.43
2102 3920 1.521006 GCGTGCTAAACAAACTTTGGC 59.479 47.619 6.47 0.78 36.58 4.52
2335 4164 3.619038 GGAGCTTCAAATACGTCCTGAAG 59.381 47.826 21.23 21.23 45.78 3.02
2601 4431 2.157738 GTTCACTTGCCAGATCAGCTT 58.842 47.619 8.94 0.00 0.00 3.74
2608 4438 2.687935 GTTCCAAAGTTCACTTGCCAGA 59.312 45.455 0.00 0.00 36.12 3.86
2645 4475 1.326548 ACAAGCGTTGTCGTGAGTTTC 59.673 47.619 0.00 0.00 40.56 2.78
2650 4480 1.202203 GTACACAAGCGTTGTCGTGA 58.798 50.000 0.00 0.00 43.23 4.35
2655 4485 7.440255 AGAATTACTTAAGTACACAAGCGTTGT 59.560 33.333 14.96 0.00 46.75 3.32
2656 4486 7.793902 AGAATTACTTAAGTACACAAGCGTTG 58.206 34.615 14.96 0.00 0.00 4.10
2704 4543 3.317430 AGACGAACGACTTACAAACTCCT 59.683 43.478 0.14 0.00 0.00 3.69
2773 4612 4.384318 GGGGTTGTGGTTGGTAAAAACAAT 60.384 41.667 0.00 0.00 33.67 2.71
2776 4615 2.500504 TGGGGTTGTGGTTGGTAAAAAC 59.499 45.455 0.00 0.00 0.00 2.43
2789 4628 2.424302 CGAACTCGGTGGGGTTGT 59.576 61.111 0.00 0.00 35.37 3.32
2822 4661 5.163943 GCGTCCTAAGAAAGAAAGATGTGAC 60.164 44.000 0.00 0.00 0.00 3.67
2844 4689 1.004595 CACTGGATCACATGAGTGCG 58.995 55.000 0.00 0.00 45.49 5.34
3008 4853 3.695830 AGACTTCGAGGTTTTATGGCA 57.304 42.857 0.19 0.00 0.00 4.92
3009 4854 6.679327 AAATAGACTTCGAGGTTTTATGGC 57.321 37.500 0.19 0.00 0.00 4.40
3014 4859 8.451748 GCTCATAAAAATAGACTTCGAGGTTTT 58.548 33.333 0.19 0.59 0.00 2.43
3021 4873 6.980978 TCTCCTGCTCATAAAAATAGACTTCG 59.019 38.462 0.00 0.00 0.00 3.79
3080 4933 3.062466 TCGTCAGGTCCTGGAGCG 61.062 66.667 19.11 18.86 35.00 5.03
3103 4956 3.960102 ACATGACTTGAAAAAGGCTCCAA 59.040 39.130 0.00 0.00 0.00 3.53
3108 4961 5.241728 ACTCCTAACATGACTTGAAAAAGGC 59.758 40.000 0.00 0.00 0.00 4.35
3131 4984 5.428253 TGTCCAGCTTGATAATGTCCTAAC 58.572 41.667 0.00 0.00 0.00 2.34
3132 4985 5.692115 TGTCCAGCTTGATAATGTCCTAA 57.308 39.130 0.00 0.00 0.00 2.69
3133 4986 5.894298 ATGTCCAGCTTGATAATGTCCTA 57.106 39.130 0.00 0.00 0.00 2.94
3134 4987 4.785346 ATGTCCAGCTTGATAATGTCCT 57.215 40.909 0.00 0.00 0.00 3.85
3135 4988 4.641989 ACAATGTCCAGCTTGATAATGTCC 59.358 41.667 0.09 0.00 0.00 4.02
3136 4989 5.449588 CCACAATGTCCAGCTTGATAATGTC 60.450 44.000 2.72 0.00 0.00 3.06
3137 4990 4.400251 CCACAATGTCCAGCTTGATAATGT 59.600 41.667 0.09 0.09 0.00 2.71
3138 4991 4.735578 GCCACAATGTCCAGCTTGATAATG 60.736 45.833 0.00 0.00 0.00 1.90
3139 4992 3.382546 GCCACAATGTCCAGCTTGATAAT 59.617 43.478 0.00 0.00 0.00 1.28
3140 4993 2.754552 GCCACAATGTCCAGCTTGATAA 59.245 45.455 0.00 0.00 0.00 1.75
3141 4994 2.368439 GCCACAATGTCCAGCTTGATA 58.632 47.619 0.00 0.00 0.00 2.15
3142 4995 1.180029 GCCACAATGTCCAGCTTGAT 58.820 50.000 0.00 0.00 0.00 2.57
3143 4996 1.236616 CGCCACAATGTCCAGCTTGA 61.237 55.000 0.00 0.00 0.00 3.02
3144 4997 1.210931 CGCCACAATGTCCAGCTTG 59.789 57.895 0.00 0.00 0.00 4.01
3145 4998 0.957395 CTCGCCACAATGTCCAGCTT 60.957 55.000 0.00 0.00 0.00 3.74
3146 4999 1.376424 CTCGCCACAATGTCCAGCT 60.376 57.895 0.00 0.00 0.00 4.24
3147 5000 2.401766 CCTCGCCACAATGTCCAGC 61.402 63.158 0.00 0.00 0.00 4.85
3148 5001 1.746615 CCCTCGCCACAATGTCCAG 60.747 63.158 0.00 0.00 0.00 3.86
3149 5002 2.184020 CTCCCTCGCCACAATGTCCA 62.184 60.000 0.00 0.00 0.00 4.02
3150 5003 1.450312 CTCCCTCGCCACAATGTCC 60.450 63.158 0.00 0.00 0.00 4.02
3151 5004 1.450312 CCTCCCTCGCCACAATGTC 60.450 63.158 0.00 0.00 0.00 3.06
3152 5005 1.274703 ATCCTCCCTCGCCACAATGT 61.275 55.000 0.00 0.00 0.00 2.71
3155 5008 1.299648 CAATCCTCCCTCGCCACAA 59.700 57.895 0.00 0.00 0.00 3.33
3167 5020 0.749454 GATGAGGCCGTTGCAATCCT 60.749 55.000 15.02 15.02 40.13 3.24
3168 5021 1.031571 TGATGAGGCCGTTGCAATCC 61.032 55.000 0.59 4.78 40.13 3.01
3177 5030 2.892425 GCGGAGTTGATGAGGCCG 60.892 66.667 0.00 0.00 44.47 6.13
3192 5045 1.442526 GCAGGAGGATGATGTTGGCG 61.443 60.000 0.00 0.00 0.00 5.69
3233 5086 2.672996 ACCTGCAATCGCCCACAC 60.673 61.111 0.00 0.00 37.32 3.82
3240 5093 1.202348 AGACTGATCGACCTGCAATCG 60.202 52.381 12.66 12.66 41.00 3.34
3282 5135 5.832060 CCTATTTGCCAGGATCTTCAAGAAT 59.168 40.000 0.00 0.00 34.91 2.40
3326 5179 1.468914 TCTGACACTTGGAGACGATCG 59.531 52.381 14.88 14.88 0.00 3.69
3328 5181 2.230025 CACTCTGACACTTGGAGACGAT 59.770 50.000 0.00 0.00 0.00 3.73
3342 5195 1.662517 TGCGAACAAAAGCACTCTGA 58.337 45.000 0.00 0.00 38.59 3.27
3381 5240 0.955428 GGCTCTGGACGTGCATGAAA 60.955 55.000 11.16 0.00 33.89 2.69
3383 5242 2.230994 GAGGCTCTGGACGTGCATGA 62.231 60.000 11.16 9.44 33.89 3.07
3402 5261 2.487934 CTGCGGTGGAGATCCTTAATG 58.512 52.381 0.00 0.00 36.82 1.90
3422 5281 1.680249 GGAAGAGTGTGGGAGCATTCC 60.680 57.143 0.00 0.00 43.23 3.01
3434 5293 3.475566 TGTCCAACTTGAGGAAGAGTG 57.524 47.619 0.00 0.00 36.80 3.51
3436 5295 4.502962 GAGATGTCCAACTTGAGGAAGAG 58.497 47.826 0.00 0.00 36.80 2.85
3474 5333 1.075374 AGCAAGTAGGCCCAATTGTCA 59.925 47.619 12.81 0.00 0.00 3.58
3492 5351 4.160626 ACCAAGAGATGTAACACCTAGAGC 59.839 45.833 0.00 0.00 0.00 4.09
3493 5352 5.186021 ACACCAAGAGATGTAACACCTAGAG 59.814 44.000 0.00 0.00 0.00 2.43
3496 5355 5.566032 CGAACACCAAGAGATGTAACACCTA 60.566 44.000 0.00 0.00 0.00 3.08
3504 5363 0.321653 GGCCGAACACCAAGAGATGT 60.322 55.000 0.00 0.00 0.00 3.06
3554 5413 0.344790 ACCCTGGAGGAGGATGATGT 59.655 55.000 0.00 0.00 46.33 3.06
3556 5415 0.104725 GGACCCTGGAGGAGGATGAT 60.105 60.000 0.00 0.00 46.33 2.45
3561 5420 0.689412 GAGAAGGACCCTGGAGGAGG 60.689 65.000 0.00 0.00 42.38 4.30
3568 5427 3.084786 GTTTCCATTGAGAAGGACCCTG 58.915 50.000 0.00 0.00 32.62 4.45
3570 5429 2.041755 AGGTTTCCATTGAGAAGGACCC 59.958 50.000 0.00 0.00 30.10 4.46
3571 5430 3.348119 GAGGTTTCCATTGAGAAGGACC 58.652 50.000 0.00 0.00 32.62 4.46
3572 5431 3.003480 CGAGGTTTCCATTGAGAAGGAC 58.997 50.000 0.00 0.00 32.62 3.85
3585 5444 1.206610 GGAAGGGTAGTCCGAGGTTTC 59.793 57.143 0.00 0.00 41.52 2.78
3586 5445 1.273759 GGAAGGGTAGTCCGAGGTTT 58.726 55.000 0.00 0.00 41.52 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.