Multiple sequence alignment - TraesCS1D01G311800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G311800 chr1D 100.000 2342 0 0 1 2342 407809088 407811429 0.000000e+00 4325.0
1 TraesCS1D01G311800 chr1D 82.511 223 16 11 242 442 13485463 13485684 8.600000e-40 174.0
2 TraesCS1D01G311800 chr7D 98.259 919 12 2 449 1366 497912034 497911119 0.000000e+00 1605.0
3 TraesCS1D01G311800 chr7D 97.946 925 15 2 449 1373 232925396 232926316 0.000000e+00 1600.0
4 TraesCS1D01G311800 chr7D 98.039 918 14 2 449 1365 149106529 149105615 0.000000e+00 1592.0
5 TraesCS1D01G311800 chr2D 97.930 918 15 2 449 1365 273018360 273019274 0.000000e+00 1587.0
6 TraesCS1D01G311800 chr5A 97.492 917 19 2 449 1365 635794084 635793172 0.000000e+00 1563.0
7 TraesCS1D01G311800 chr5A 84.545 110 8 6 1 102 85355250 85355358 1.480000e-17 100.0
8 TraesCS1D01G311800 chr3D 97.386 918 20 2 449 1366 87390485 87391398 0.000000e+00 1559.0
9 TraesCS1D01G311800 chr3D 91.716 507 31 7 1364 1863 603012138 603012640 0.000000e+00 693.0
10 TraesCS1D01G311800 chr3D 95.833 144 6 0 244 387 603006435 603006578 1.400000e-57 233.0
11 TraesCS1D01G311800 chr3D 96.667 90 3 0 1858 1947 603012785 603012874 1.450000e-32 150.0
12 TraesCS1D01G311800 chr2A 96.514 918 29 1 449 1366 713914475 713915389 0.000000e+00 1515.0
13 TraesCS1D01G311800 chr2A 96.087 920 28 5 449 1365 742308858 742307944 0.000000e+00 1493.0
14 TraesCS1D01G311800 chr6A 96.187 918 27 5 449 1365 35542900 35543810 0.000000e+00 1495.0
15 TraesCS1D01G311800 chr5B 92.110 507 31 9 1364 1863 563590967 563590463 0.000000e+00 706.0
16 TraesCS1D01G311800 chr5B 93.860 114 3 2 334 443 563591064 563590951 4.000000e-38 169.0
17 TraesCS1D01G311800 chr5B 89.516 124 10 1 244 364 345453541 345453418 1.120000e-33 154.0
18 TraesCS1D01G311800 chr5B 94.444 90 5 0 1858 1947 563590320 563590231 3.140000e-29 139.0
19 TraesCS1D01G311800 chr5B 89.011 91 9 1 1 91 594250282 594250193 6.840000e-21 111.0
20 TraesCS1D01G311800 chr5B 90.566 53 5 0 273 325 686584684 686584632 1.160000e-08 71.3
21 TraesCS1D01G311800 chr6B 91.732 508 29 11 1364 1863 9356167 9356669 0.000000e+00 693.0
22 TraesCS1D01G311800 chr6B 92.683 205 10 3 244 443 9355979 9356183 8.190000e-75 291.0
23 TraesCS1D01G311800 chr6B 95.556 90 4 0 1858 1947 9356814 9356903 6.750000e-31 145.0
24 TraesCS1D01G311800 chr7A 85.122 531 41 19 1364 1863 20717039 20717562 2.080000e-140 508.0
25 TraesCS1D01G311800 chr7A 87.019 208 19 6 244 443 20716848 20717055 6.510000e-56 228.0
26 TraesCS1D01G311800 chr7A 94.444 90 5 0 1858 1947 20717707 20717796 3.140000e-29 139.0
27 TraesCS1D01G311800 chr7A 85.600 125 15 3 244 366 9267702 9267579 6.790000e-26 128.0
28 TraesCS1D01G311800 chr6D 83.939 523 38 18 1364 1859 160238210 160237707 2.120000e-125 459.0
29 TraesCS1D01G311800 chr6D 84.234 222 13 11 244 443 160238415 160238194 1.840000e-46 196.0
30 TraesCS1D01G311800 chr3A 87.625 299 26 5 1364 1662 729480939 729480652 1.040000e-88 337.0
31 TraesCS1D01G311800 chr3A 88.511 235 25 2 1428 1662 39310811 39311043 1.370000e-72 283.0
32 TraesCS1D01G311800 chr3A 88.511 235 25 2 1428 1662 39327543 39327775 1.370000e-72 283.0
33 TraesCS1D01G311800 chr3A 88.085 235 26 2 1428 1662 38827541 38827773 6.370000e-71 278.0
34 TraesCS1D01G311800 chr3A 88.085 235 26 2 1428 1662 39229085 39229317 6.370000e-71 278.0
35 TraesCS1D01G311800 chr3A 88.442 199 16 3 1665 1863 39311198 39311389 1.400000e-57 233.0
36 TraesCS1D01G311800 chr3A 88.442 199 16 3 1665 1863 39327930 39328121 1.400000e-57 233.0
37 TraesCS1D01G311800 chr3A 86.243 189 14 8 1681 1863 729480606 729480424 6.600000e-46 195.0
38 TraesCS1D01G311800 chr3A 81.081 185 13 4 281 443 729481107 729480923 6.790000e-26 128.0
39 TraesCS1D01G311800 chr3B 80.286 350 41 13 1541 1863 479996830 479996482 3.010000e-59 239.0
40 TraesCS1D01G311800 chr3B 91.111 90 8 0 1858 1947 479996426 479996337 3.160000e-24 122.0
41 TraesCS1D01G311800 chr1B 92.763 152 9 2 97 246 548301778 548301929 3.920000e-53 219.0
42 TraesCS1D01G311800 chr1B 91.398 93 6 2 1 91 16507998 16507906 2.440000e-25 126.0
43 TraesCS1D01G311800 chr1B 85.714 91 13 0 1 91 343988860 343988950 1.920000e-16 97.1
44 TraesCS1D01G311800 chr1A 92.308 91 7 0 1 91 13294851 13294761 1.890000e-26 130.0
45 TraesCS1D01G311800 chr1A 89.583 96 9 1 1 95 592995530 592995625 1.140000e-23 121.0
46 TraesCS1D01G311800 chr1A 79.042 167 21 9 1393 1554 577398695 577398538 4.120000e-18 102.0
47 TraesCS1D01G311800 chr4A 92.222 90 7 0 1858 1947 435627873 435627784 6.790000e-26 128.0
48 TraesCS1D01G311800 chr4A 86.207 87 8 3 1 87 611922349 611922431 8.910000e-15 91.6
49 TraesCS1D01G311800 chr4B 91.011 89 6 2 1858 1945 588555104 588555191 4.090000e-23 119.0
50 TraesCS1D01G311800 chr4B 91.011 89 6 2 1858 1945 588586822 588586909 4.090000e-23 119.0
51 TraesCS1D01G311800 chrUn 88.750 80 8 1 12 91 71298361 71298439 1.920000e-16 97.1
52 TraesCS1D01G311800 chr7B 89.474 76 7 1 16 91 517056770 517056844 6.890000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G311800 chr1D 407809088 407811429 2341 False 4325.000000 4325 100.000000 1 2342 1 chr1D.!!$F2 2341
1 TraesCS1D01G311800 chr7D 497911119 497912034 915 True 1605.000000 1605 98.259000 449 1366 1 chr7D.!!$R2 917
2 TraesCS1D01G311800 chr7D 232925396 232926316 920 False 1600.000000 1600 97.946000 449 1373 1 chr7D.!!$F1 924
3 TraesCS1D01G311800 chr7D 149105615 149106529 914 True 1592.000000 1592 98.039000 449 1365 1 chr7D.!!$R1 916
4 TraesCS1D01G311800 chr2D 273018360 273019274 914 False 1587.000000 1587 97.930000 449 1365 1 chr2D.!!$F1 916
5 TraesCS1D01G311800 chr5A 635793172 635794084 912 True 1563.000000 1563 97.492000 449 1365 1 chr5A.!!$R1 916
6 TraesCS1D01G311800 chr3D 87390485 87391398 913 False 1559.000000 1559 97.386000 449 1366 1 chr3D.!!$F1 917
7 TraesCS1D01G311800 chr3D 603012138 603012874 736 False 421.500000 693 94.191500 1364 1947 2 chr3D.!!$F3 583
8 TraesCS1D01G311800 chr2A 713914475 713915389 914 False 1515.000000 1515 96.514000 449 1366 1 chr2A.!!$F1 917
9 TraesCS1D01G311800 chr2A 742307944 742308858 914 True 1493.000000 1493 96.087000 449 1365 1 chr2A.!!$R1 916
10 TraesCS1D01G311800 chr6A 35542900 35543810 910 False 1495.000000 1495 96.187000 449 1365 1 chr6A.!!$F1 916
11 TraesCS1D01G311800 chr5B 563590231 563591064 833 True 338.000000 706 93.471333 334 1947 3 chr5B.!!$R4 1613
12 TraesCS1D01G311800 chr6B 9355979 9356903 924 False 376.333333 693 93.323667 244 1947 3 chr6B.!!$F1 1703
13 TraesCS1D01G311800 chr7A 20716848 20717796 948 False 291.666667 508 88.861667 244 1947 3 chr7A.!!$F1 1703
14 TraesCS1D01G311800 chr6D 160237707 160238415 708 True 327.500000 459 84.086500 244 1859 2 chr6D.!!$R1 1615
15 TraesCS1D01G311800 chr3A 39310811 39311389 578 False 258.000000 283 88.476500 1428 1863 2 chr3A.!!$F3 435
16 TraesCS1D01G311800 chr3A 39327543 39328121 578 False 258.000000 283 88.476500 1428 1863 2 chr3A.!!$F4 435
17 TraesCS1D01G311800 chr3A 729480424 729481107 683 True 220.000000 337 84.983000 281 1863 3 chr3A.!!$R1 1582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.035439 ATAGGTGTTCGGTTGCAGGG 60.035 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 1883 0.026156 TTGCAAATACATCGCGCTCG 59.974 50.0 5.56 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.566197 TTTGATGTTGCAAAGTTTTGGTTT 57.434 29.167 0.00 0.00 38.57 3.27
24 25 6.566197 TTGATGTTGCAAAGTTTTGGTTTT 57.434 29.167 0.00 0.00 38.57 2.43
25 26 6.566197 TGATGTTGCAAAGTTTTGGTTTTT 57.434 29.167 0.00 0.00 38.57 1.94
62 63 7.859325 TTAATTTACTGTTCATAGAGGGTGC 57.141 36.000 0.00 0.00 0.00 5.01
63 64 3.906720 TTACTGTTCATAGAGGGTGCC 57.093 47.619 0.00 0.00 0.00 5.01
64 65 1.958288 ACTGTTCATAGAGGGTGCCT 58.042 50.000 0.00 0.00 36.03 4.75
65 66 3.116096 ACTGTTCATAGAGGGTGCCTA 57.884 47.619 0.00 0.00 31.76 3.93
66 67 3.034635 ACTGTTCATAGAGGGTGCCTAG 58.965 50.000 0.00 0.00 31.76 3.02
67 68 2.366916 CTGTTCATAGAGGGTGCCTAGG 59.633 54.545 3.67 3.67 31.76 3.02
68 69 1.070914 GTTCATAGAGGGTGCCTAGGC 59.929 57.143 27.71 27.71 42.35 3.93
78 79 4.858680 GCCTAGGCACCCGGAAGC 62.859 72.222 29.33 6.22 41.49 3.86
79 80 3.083997 CCTAGGCACCCGGAAGCT 61.084 66.667 16.04 6.65 0.00 3.74
80 81 1.760875 CCTAGGCACCCGGAAGCTA 60.761 63.158 16.04 7.31 0.00 3.32
81 82 1.122019 CCTAGGCACCCGGAAGCTAT 61.122 60.000 16.04 9.05 0.00 2.97
82 83 0.318762 CTAGGCACCCGGAAGCTATC 59.681 60.000 16.04 2.22 0.00 2.08
83 84 0.397957 TAGGCACCCGGAAGCTATCA 60.398 55.000 16.04 0.00 0.00 2.15
84 85 1.523938 GGCACCCGGAAGCTATCAC 60.524 63.158 16.04 0.00 0.00 3.06
85 86 1.220749 GCACCCGGAAGCTATCACA 59.779 57.895 0.73 0.00 0.00 3.58
86 87 1.090052 GCACCCGGAAGCTATCACAC 61.090 60.000 0.73 0.00 0.00 3.82
87 88 0.462047 CACCCGGAAGCTATCACACC 60.462 60.000 0.73 0.00 0.00 4.16
88 89 0.617820 ACCCGGAAGCTATCACACCT 60.618 55.000 0.73 0.00 0.00 4.00
89 90 0.541863 CCCGGAAGCTATCACACCTT 59.458 55.000 0.73 0.00 0.00 3.50
90 91 1.065418 CCCGGAAGCTATCACACCTTT 60.065 52.381 0.73 0.00 0.00 3.11
91 92 2.618045 CCCGGAAGCTATCACACCTTTT 60.618 50.000 0.73 0.00 0.00 2.27
92 93 3.081804 CCGGAAGCTATCACACCTTTTT 58.918 45.455 0.00 0.00 0.00 1.94
114 115 7.583860 TTTTGTTTTGGTAGTTAGTGTTTGC 57.416 32.000 0.00 0.00 0.00 3.68
115 116 6.518208 TTGTTTTGGTAGTTAGTGTTTGCT 57.482 33.333 0.00 0.00 0.00 3.91
116 117 5.885881 TGTTTTGGTAGTTAGTGTTTGCTG 58.114 37.500 0.00 0.00 0.00 4.41
117 118 4.561735 TTTGGTAGTTAGTGTTTGCTGC 57.438 40.909 0.00 0.00 0.00 5.25
118 119 2.139917 TGGTAGTTAGTGTTTGCTGCG 58.860 47.619 0.00 0.00 0.00 5.18
119 120 2.140717 GGTAGTTAGTGTTTGCTGCGT 58.859 47.619 0.00 0.00 0.00 5.24
120 121 2.096417 GGTAGTTAGTGTTTGCTGCGTG 60.096 50.000 0.00 0.00 0.00 5.34
121 122 1.663695 AGTTAGTGTTTGCTGCGTGT 58.336 45.000 0.00 0.00 0.00 4.49
122 123 2.014128 AGTTAGTGTTTGCTGCGTGTT 58.986 42.857 0.00 0.00 0.00 3.32
123 124 2.031683 AGTTAGTGTTTGCTGCGTGTTC 59.968 45.455 0.00 0.00 0.00 3.18
124 125 1.657822 TAGTGTTTGCTGCGTGTTCA 58.342 45.000 0.00 0.00 0.00 3.18
125 126 1.024271 AGTGTTTGCTGCGTGTTCAT 58.976 45.000 0.00 0.00 0.00 2.57
126 127 1.122849 GTGTTTGCTGCGTGTTCATG 58.877 50.000 0.00 0.00 0.00 3.07
127 128 1.020437 TGTTTGCTGCGTGTTCATGA 58.980 45.000 0.00 0.00 0.00 3.07
128 129 1.403323 TGTTTGCTGCGTGTTCATGAA 59.597 42.857 3.38 3.38 0.00 2.57
129 130 2.159324 TGTTTGCTGCGTGTTCATGAAA 60.159 40.909 10.35 0.00 0.00 2.69
130 131 3.052036 GTTTGCTGCGTGTTCATGAAAT 58.948 40.909 10.35 0.00 0.00 2.17
131 132 3.367992 TTGCTGCGTGTTCATGAAATT 57.632 38.095 10.35 0.00 0.00 1.82
132 133 2.932498 TGCTGCGTGTTCATGAAATTC 58.068 42.857 10.35 0.00 0.00 2.17
133 134 2.553602 TGCTGCGTGTTCATGAAATTCT 59.446 40.909 10.35 0.00 0.00 2.40
134 135 3.166657 GCTGCGTGTTCATGAAATTCTC 58.833 45.455 10.35 0.00 0.00 2.87
135 136 3.120060 GCTGCGTGTTCATGAAATTCTCT 60.120 43.478 10.35 0.00 0.00 3.10
136 137 4.614535 GCTGCGTGTTCATGAAATTCTCTT 60.615 41.667 10.35 0.00 0.00 2.85
137 138 4.786507 TGCGTGTTCATGAAATTCTCTTG 58.213 39.130 10.35 0.00 0.00 3.02
138 139 3.605486 GCGTGTTCATGAAATTCTCTTGC 59.395 43.478 10.35 2.69 0.00 4.01
139 140 4.161333 CGTGTTCATGAAATTCTCTTGCC 58.839 43.478 10.35 0.00 0.00 4.52
140 141 4.488879 GTGTTCATGAAATTCTCTTGCCC 58.511 43.478 10.35 0.00 0.00 5.36
141 142 4.219288 GTGTTCATGAAATTCTCTTGCCCT 59.781 41.667 10.35 0.00 0.00 5.19
142 143 4.219070 TGTTCATGAAATTCTCTTGCCCTG 59.781 41.667 10.35 0.00 0.00 4.45
143 144 2.756760 TCATGAAATTCTCTTGCCCTGC 59.243 45.455 0.00 0.00 0.00 4.85
144 145 1.549203 TGAAATTCTCTTGCCCTGCC 58.451 50.000 0.00 0.00 0.00 4.85
145 146 0.820226 GAAATTCTCTTGCCCTGCCC 59.180 55.000 0.00 0.00 0.00 5.36
146 147 0.411058 AAATTCTCTTGCCCTGCCCT 59.589 50.000 0.00 0.00 0.00 5.19
147 148 1.298953 AATTCTCTTGCCCTGCCCTA 58.701 50.000 0.00 0.00 0.00 3.53
148 149 1.527457 ATTCTCTTGCCCTGCCCTAT 58.473 50.000 0.00 0.00 0.00 2.57
149 150 0.548031 TTCTCTTGCCCTGCCCTATG 59.452 55.000 0.00 0.00 0.00 2.23
150 151 0.621571 TCTCTTGCCCTGCCCTATGT 60.622 55.000 0.00 0.00 0.00 2.29
151 152 0.257039 CTCTTGCCCTGCCCTATGTT 59.743 55.000 0.00 0.00 0.00 2.71
152 153 1.490490 CTCTTGCCCTGCCCTATGTTA 59.510 52.381 0.00 0.00 0.00 2.41
153 154 2.107204 CTCTTGCCCTGCCCTATGTTAT 59.893 50.000 0.00 0.00 0.00 1.89
154 155 2.513738 TCTTGCCCTGCCCTATGTTATT 59.486 45.455 0.00 0.00 0.00 1.40
155 156 2.363306 TGCCCTGCCCTATGTTATTG 57.637 50.000 0.00 0.00 0.00 1.90
156 157 1.568597 TGCCCTGCCCTATGTTATTGT 59.431 47.619 0.00 0.00 0.00 2.71
157 158 1.956477 GCCCTGCCCTATGTTATTGTG 59.044 52.381 0.00 0.00 0.00 3.33
158 159 2.586425 CCCTGCCCTATGTTATTGTGG 58.414 52.381 0.00 0.00 0.00 4.17
159 160 2.174639 CCCTGCCCTATGTTATTGTGGA 59.825 50.000 0.00 0.00 0.00 4.02
160 161 3.480470 CCTGCCCTATGTTATTGTGGAG 58.520 50.000 0.00 0.00 0.00 3.86
161 162 3.117888 CCTGCCCTATGTTATTGTGGAGT 60.118 47.826 0.00 0.00 0.00 3.85
162 163 4.526970 CTGCCCTATGTTATTGTGGAGTT 58.473 43.478 0.00 0.00 0.00 3.01
163 164 4.269183 TGCCCTATGTTATTGTGGAGTTG 58.731 43.478 0.00 0.00 0.00 3.16
164 165 3.632145 GCCCTATGTTATTGTGGAGTTGG 59.368 47.826 0.00 0.00 0.00 3.77
165 166 4.627741 GCCCTATGTTATTGTGGAGTTGGA 60.628 45.833 0.00 0.00 0.00 3.53
166 167 5.126067 CCCTATGTTATTGTGGAGTTGGAG 58.874 45.833 0.00 0.00 0.00 3.86
167 168 4.576463 CCTATGTTATTGTGGAGTTGGAGC 59.424 45.833 0.00 0.00 0.00 4.70
168 169 3.788227 TGTTATTGTGGAGTTGGAGCT 57.212 42.857 0.00 0.00 0.00 4.09
169 170 4.901197 TGTTATTGTGGAGTTGGAGCTA 57.099 40.909 0.00 0.00 0.00 3.32
170 171 5.435686 TGTTATTGTGGAGTTGGAGCTAT 57.564 39.130 0.00 0.00 0.00 2.97
171 172 6.553953 TGTTATTGTGGAGTTGGAGCTATA 57.446 37.500 0.00 0.00 0.00 1.31
172 173 6.953101 TGTTATTGTGGAGTTGGAGCTATAA 58.047 36.000 0.00 0.00 0.00 0.98
173 174 7.398829 TGTTATTGTGGAGTTGGAGCTATAAA 58.601 34.615 0.00 0.00 0.00 1.40
174 175 8.052748 TGTTATTGTGGAGTTGGAGCTATAAAT 58.947 33.333 0.00 0.00 0.00 1.40
175 176 6.949352 ATTGTGGAGTTGGAGCTATAAATG 57.051 37.500 0.00 0.00 0.00 2.32
176 177 5.692115 TGTGGAGTTGGAGCTATAAATGA 57.308 39.130 0.00 0.00 0.00 2.57
177 178 5.674525 TGTGGAGTTGGAGCTATAAATGAG 58.325 41.667 0.00 0.00 0.00 2.90
178 179 5.059833 GTGGAGTTGGAGCTATAAATGAGG 58.940 45.833 0.00 0.00 0.00 3.86
179 180 4.721776 TGGAGTTGGAGCTATAAATGAGGT 59.278 41.667 0.00 0.00 0.00 3.85
180 181 5.163301 TGGAGTTGGAGCTATAAATGAGGTC 60.163 44.000 0.00 0.00 40.07 3.85
186 187 4.646572 GAGCTATAAATGAGGTCCCTTGG 58.353 47.826 0.00 0.00 35.78 3.61
187 188 3.149981 GCTATAAATGAGGTCCCTTGGC 58.850 50.000 0.00 0.00 0.00 4.52
188 189 2.348411 ATAAATGAGGTCCCTTGGCG 57.652 50.000 0.00 0.00 0.00 5.69
189 190 0.988832 TAAATGAGGTCCCTTGGCGT 59.011 50.000 0.00 0.00 0.00 5.68
190 191 0.609131 AAATGAGGTCCCTTGGCGTG 60.609 55.000 0.00 0.00 0.00 5.34
191 192 1.488705 AATGAGGTCCCTTGGCGTGA 61.489 55.000 0.00 0.00 0.00 4.35
192 193 2.047179 GAGGTCCCTTGGCGTGAC 60.047 66.667 0.00 0.00 0.00 3.67
193 194 3.934391 GAGGTCCCTTGGCGTGACG 62.934 68.421 0.00 0.00 0.00 4.35
194 195 3.998672 GGTCCCTTGGCGTGACGA 61.999 66.667 10.10 0.00 0.00 4.20
195 196 2.264794 GTCCCTTGGCGTGACGAT 59.735 61.111 10.10 0.00 0.00 3.73
196 197 2.100631 GTCCCTTGGCGTGACGATG 61.101 63.158 10.10 0.00 0.00 3.84
197 198 2.264480 CCCTTGGCGTGACGATGA 59.736 61.111 10.10 0.00 0.00 2.92
198 199 2.100631 CCCTTGGCGTGACGATGAC 61.101 63.158 10.10 0.00 0.00 3.06
199 200 1.374125 CCTTGGCGTGACGATGACA 60.374 57.895 10.10 0.00 0.00 3.58
200 201 1.626654 CCTTGGCGTGACGATGACAC 61.627 60.000 10.10 0.00 35.26 3.67
208 209 2.988343 GTGACGATGACACGAGATAGG 58.012 52.381 0.00 0.00 37.03 2.57
209 210 2.355132 GTGACGATGACACGAGATAGGT 59.645 50.000 0.00 0.00 37.03 3.08
210 211 2.354821 TGACGATGACACGAGATAGGTG 59.645 50.000 0.00 0.00 41.15 4.00
216 217 1.542492 ACACGAGATAGGTGTTCGGT 58.458 50.000 0.00 0.00 45.84 4.69
217 218 1.891150 ACACGAGATAGGTGTTCGGTT 59.109 47.619 0.00 0.00 45.84 4.44
218 219 2.259618 CACGAGATAGGTGTTCGGTTG 58.740 52.381 0.00 0.00 38.58 3.77
219 220 1.278238 CGAGATAGGTGTTCGGTTGC 58.722 55.000 0.00 0.00 0.00 4.17
220 221 1.403647 CGAGATAGGTGTTCGGTTGCA 60.404 52.381 0.00 0.00 0.00 4.08
221 222 2.271800 GAGATAGGTGTTCGGTTGCAG 58.728 52.381 0.00 0.00 0.00 4.41
222 223 1.066143 AGATAGGTGTTCGGTTGCAGG 60.066 52.381 0.00 0.00 0.00 4.85
223 224 0.035439 ATAGGTGTTCGGTTGCAGGG 60.035 55.000 0.00 0.00 0.00 4.45
224 225 1.412453 TAGGTGTTCGGTTGCAGGGT 61.412 55.000 0.00 0.00 0.00 4.34
225 226 1.071814 GGTGTTCGGTTGCAGGGTA 59.928 57.895 0.00 0.00 0.00 3.69
226 227 0.322187 GGTGTTCGGTTGCAGGGTAT 60.322 55.000 0.00 0.00 0.00 2.73
227 228 0.802494 GTGTTCGGTTGCAGGGTATG 59.198 55.000 0.00 0.00 0.00 2.39
228 229 0.322098 TGTTCGGTTGCAGGGTATGG 60.322 55.000 0.00 0.00 0.00 2.74
229 230 0.322187 GTTCGGTTGCAGGGTATGGT 60.322 55.000 0.00 0.00 0.00 3.55
230 231 0.035820 TTCGGTTGCAGGGTATGGTC 60.036 55.000 0.00 0.00 0.00 4.02
231 232 1.195442 TCGGTTGCAGGGTATGGTCA 61.195 55.000 0.00 0.00 0.00 4.02
232 233 0.107214 CGGTTGCAGGGTATGGTCAT 60.107 55.000 0.00 0.00 0.00 3.06
233 234 1.680338 GGTTGCAGGGTATGGTCATC 58.320 55.000 0.00 0.00 0.00 2.92
234 235 1.299541 GTTGCAGGGTATGGTCATCG 58.700 55.000 0.00 0.00 0.00 3.84
235 236 0.908910 TTGCAGGGTATGGTCATCGT 59.091 50.000 0.00 0.00 0.00 3.73
236 237 1.783071 TGCAGGGTATGGTCATCGTA 58.217 50.000 0.00 0.00 0.00 3.43
237 238 1.686587 TGCAGGGTATGGTCATCGTAG 59.313 52.381 0.00 0.00 0.00 3.51
238 239 1.000955 GCAGGGTATGGTCATCGTAGG 59.999 57.143 0.00 0.00 0.00 3.18
239 240 2.594131 CAGGGTATGGTCATCGTAGGA 58.406 52.381 0.00 0.00 0.00 2.94
240 241 3.165875 CAGGGTATGGTCATCGTAGGAT 58.834 50.000 0.00 0.00 0.00 3.24
241 242 3.578716 CAGGGTATGGTCATCGTAGGATT 59.421 47.826 0.00 0.00 0.00 3.01
242 243 3.578716 AGGGTATGGTCATCGTAGGATTG 59.421 47.826 0.00 0.00 0.00 2.67
249 250 0.469917 CATCGTAGGATTGGTGGCCT 59.530 55.000 3.32 0.00 38.31 5.19
387 411 1.711206 GCACTAGAAGACGGTTGACC 58.289 55.000 0.00 0.00 0.00 4.02
415 443 1.000283 CTGTGATCTGTAGCCCGATCC 60.000 57.143 0.00 0.00 36.15 3.36
429 458 2.700897 CCCGATCCCTAGTCAATCAAGT 59.299 50.000 0.00 0.00 0.00 3.16
430 459 3.243907 CCCGATCCCTAGTCAATCAAGTC 60.244 52.174 0.00 0.00 0.00 3.01
431 460 3.384789 CCGATCCCTAGTCAATCAAGTCA 59.615 47.826 0.00 0.00 0.00 3.41
432 461 4.141937 CCGATCCCTAGTCAATCAAGTCAA 60.142 45.833 0.00 0.00 0.00 3.18
433 462 5.046529 CGATCCCTAGTCAATCAAGTCAAG 58.953 45.833 0.00 0.00 0.00 3.02
434 463 4.826274 TCCCTAGTCAATCAAGTCAAGG 57.174 45.455 0.00 0.00 0.00 3.61
435 464 4.425772 TCCCTAGTCAATCAAGTCAAGGA 58.574 43.478 0.00 0.00 0.00 3.36
436 465 4.467795 TCCCTAGTCAATCAAGTCAAGGAG 59.532 45.833 0.00 0.00 0.00 3.69
437 466 4.383552 CCCTAGTCAATCAAGTCAAGGAGG 60.384 50.000 0.00 0.00 0.00 4.30
438 467 4.467795 CCTAGTCAATCAAGTCAAGGAGGA 59.532 45.833 0.00 0.00 0.00 3.71
439 468 4.982241 AGTCAATCAAGTCAAGGAGGAA 57.018 40.909 0.00 0.00 0.00 3.36
440 469 5.310409 AGTCAATCAAGTCAAGGAGGAAA 57.690 39.130 0.00 0.00 0.00 3.13
441 470 5.312079 AGTCAATCAAGTCAAGGAGGAAAG 58.688 41.667 0.00 0.00 0.00 2.62
442 471 4.074970 TCAATCAAGTCAAGGAGGAAAGC 58.925 43.478 0.00 0.00 0.00 3.51
443 472 3.795688 ATCAAGTCAAGGAGGAAAGCA 57.204 42.857 0.00 0.00 0.00 3.91
444 473 2.851195 TCAAGTCAAGGAGGAAAGCAC 58.149 47.619 0.00 0.00 0.00 4.40
445 474 2.439507 TCAAGTCAAGGAGGAAAGCACT 59.560 45.455 0.00 0.00 0.00 4.40
446 475 3.117888 TCAAGTCAAGGAGGAAAGCACTT 60.118 43.478 0.00 0.00 0.00 3.16
447 476 2.856222 AGTCAAGGAGGAAAGCACTTG 58.144 47.619 0.00 0.00 41.14 3.16
945 980 3.182967 GGCAGTATTGAGAGACGACAAG 58.817 50.000 0.00 0.00 0.00 3.16
1087 1122 7.270779 CCTAATCATCAACTCTGACAATCTGA 58.729 38.462 0.00 0.00 33.30 3.27
1121 1156 0.687354 ATGCAAGACGGAGGACAGTT 59.313 50.000 0.00 0.00 0.00 3.16
1122 1157 0.468226 TGCAAGACGGAGGACAGTTT 59.532 50.000 0.00 0.00 0.00 2.66
1129 1164 1.376037 GGAGGACAGTTTGCGGGAG 60.376 63.158 0.00 0.00 0.00 4.30
1558 1609 1.760613 CTGACCACCCGCCTCTTATTA 59.239 52.381 0.00 0.00 0.00 0.98
1763 1973 3.597255 GAAACACAAGAGGCTACTACCC 58.403 50.000 0.00 0.00 0.00 3.69
1849 2065 6.194876 CGAACGATTGACTTAGTCTATGTCAC 59.805 42.308 22.01 13.81 40.96 3.67
1871 2237 5.869344 CACGTGTCTTGAATTTCCTCTCATA 59.131 40.000 7.58 0.00 0.00 2.15
1947 2313 1.252904 ACATTGGTGTGCATGGGAGC 61.253 55.000 0.00 0.00 37.14 4.70
1948 2314 1.077086 ATTGGTGTGCATGGGAGCA 59.923 52.632 0.00 0.00 43.35 4.26
1949 2315 0.968901 ATTGGTGTGCATGGGAGCAG 60.969 55.000 0.00 0.00 46.69 4.24
1950 2316 2.034687 GGTGTGCATGGGAGCAGT 59.965 61.111 0.00 0.00 46.69 4.40
1951 2317 2.338015 GGTGTGCATGGGAGCAGTG 61.338 63.158 0.00 0.00 46.69 3.66
1952 2318 2.034532 TGTGCATGGGAGCAGTGG 59.965 61.111 0.00 0.00 46.69 4.00
1953 2319 3.446570 GTGCATGGGAGCAGTGGC 61.447 66.667 0.00 0.00 46.69 5.01
1963 2329 4.082523 GCAGTGGCGGAGGTAGCA 62.083 66.667 0.00 0.00 36.08 3.49
1964 2330 2.903357 CAGTGGCGGAGGTAGCAT 59.097 61.111 0.00 0.00 36.08 3.79
1965 2331 1.221840 CAGTGGCGGAGGTAGCATT 59.778 57.895 0.00 0.00 36.08 3.56
1966 2332 0.392998 CAGTGGCGGAGGTAGCATTT 60.393 55.000 0.00 0.00 36.08 2.32
1967 2333 0.392998 AGTGGCGGAGGTAGCATTTG 60.393 55.000 0.00 0.00 36.08 2.32
1968 2334 0.392461 GTGGCGGAGGTAGCATTTGA 60.392 55.000 0.00 0.00 36.08 2.69
1969 2335 0.392461 TGGCGGAGGTAGCATTTGAC 60.392 55.000 0.00 0.00 36.08 3.18
1970 2336 1.429148 GGCGGAGGTAGCATTTGACG 61.429 60.000 0.00 0.00 36.08 4.35
1971 2337 0.459585 GCGGAGGTAGCATTTGACGA 60.460 55.000 0.00 0.00 34.19 4.20
1972 2338 1.278238 CGGAGGTAGCATTTGACGAC 58.722 55.000 0.00 0.00 0.00 4.34
1973 2339 1.403647 CGGAGGTAGCATTTGACGACA 60.404 52.381 0.00 0.00 0.00 4.35
1974 2340 2.271800 GGAGGTAGCATTTGACGACAG 58.728 52.381 0.00 0.00 0.00 3.51
1975 2341 2.271800 GAGGTAGCATTTGACGACAGG 58.728 52.381 0.00 0.00 0.00 4.00
1976 2342 1.066143 AGGTAGCATTTGACGACAGGG 60.066 52.381 0.00 0.00 0.00 4.45
1977 2343 1.338769 GGTAGCATTTGACGACAGGGT 60.339 52.381 0.00 0.00 0.00 4.34
1978 2344 1.732259 GTAGCATTTGACGACAGGGTG 59.268 52.381 0.00 0.00 0.00 4.61
1979 2345 0.606401 AGCATTTGACGACAGGGTGG 60.606 55.000 0.00 0.00 0.00 4.61
1980 2346 0.889186 GCATTTGACGACAGGGTGGT 60.889 55.000 0.00 0.00 0.00 4.16
1981 2347 1.156736 CATTTGACGACAGGGTGGTC 58.843 55.000 4.80 4.80 40.72 4.02
1982 2348 0.036306 ATTTGACGACAGGGTGGTCC 59.964 55.000 8.67 0.00 39.84 4.46
1983 2349 1.338890 TTTGACGACAGGGTGGTCCA 61.339 55.000 8.67 0.00 39.84 4.02
1984 2350 1.125093 TTGACGACAGGGTGGTCCAT 61.125 55.000 8.67 0.00 39.84 3.41
1985 2351 1.218316 GACGACAGGGTGGTCCATC 59.782 63.158 0.00 0.00 35.72 3.51
1986 2352 2.240162 GACGACAGGGTGGTCCATCC 62.240 65.000 14.02 14.02 35.72 3.51
1987 2353 2.998949 GACAGGGTGGTCCATCCC 59.001 66.667 18.33 17.83 43.71 3.85
1988 2354 2.614013 ACAGGGTGGTCCATCCCC 60.614 66.667 18.33 13.44 44.40 4.81
1989 2355 2.613696 CAGGGTGGTCCATCCCCA 60.614 66.667 18.33 0.00 44.40 4.96
1990 2356 2.212761 AGGGTGGTCCATCCCCAA 59.787 61.111 18.33 0.00 44.40 4.12
1991 2357 1.467190 AGGGTGGTCCATCCCCAAA 60.467 57.895 18.33 0.00 44.40 3.28
1992 2358 1.077298 AGGGTGGTCCATCCCCAAAA 61.077 55.000 18.33 0.00 44.40 2.44
1993 2359 0.178918 GGGTGGTCCATCCCCAAAAA 60.179 55.000 10.49 0.00 38.37 1.94
2026 2392 9.743581 ATAAGCAATATGACATGTGATATTCCA 57.256 29.630 22.81 11.60 29.08 3.53
2027 2393 8.467963 AAGCAATATGACATGTGATATTCCAA 57.532 30.769 22.81 0.00 29.08 3.53
2028 2394 7.879070 AGCAATATGACATGTGATATTCCAAC 58.121 34.615 22.81 14.50 29.08 3.77
2029 2395 7.722728 AGCAATATGACATGTGATATTCCAACT 59.277 33.333 22.81 16.01 29.08 3.16
2030 2396 9.002600 GCAATATGACATGTGATATTCCAACTA 57.997 33.333 22.81 0.00 29.08 2.24
2032 2398 9.507329 AATATGACATGTGATATTCCAACTACC 57.493 33.333 20.73 0.00 25.66 3.18
2033 2399 5.680619 TGACATGTGATATTCCAACTACCC 58.319 41.667 1.15 0.00 0.00 3.69
2034 2400 5.048846 ACATGTGATATTCCAACTACCCC 57.951 43.478 0.00 0.00 0.00 4.95
2035 2401 4.726825 ACATGTGATATTCCAACTACCCCT 59.273 41.667 0.00 0.00 0.00 4.79
2036 2402 5.193728 ACATGTGATATTCCAACTACCCCTT 59.806 40.000 0.00 0.00 0.00 3.95
2037 2403 5.367945 TGTGATATTCCAACTACCCCTTC 57.632 43.478 0.00 0.00 0.00 3.46
2038 2404 4.785914 TGTGATATTCCAACTACCCCTTCA 59.214 41.667 0.00 0.00 0.00 3.02
2039 2405 5.431731 TGTGATATTCCAACTACCCCTTCAT 59.568 40.000 0.00 0.00 0.00 2.57
2040 2406 6.617784 TGTGATATTCCAACTACCCCTTCATA 59.382 38.462 0.00 0.00 0.00 2.15
2041 2407 7.128109 TGTGATATTCCAACTACCCCTTCATAA 59.872 37.037 0.00 0.00 0.00 1.90
2042 2408 7.996644 GTGATATTCCAACTACCCCTTCATAAA 59.003 37.037 0.00 0.00 0.00 1.40
2043 2409 8.561769 TGATATTCCAACTACCCCTTCATAAAA 58.438 33.333 0.00 0.00 0.00 1.52
2044 2410 8.996651 ATATTCCAACTACCCCTTCATAAAAG 57.003 34.615 0.00 0.00 0.00 2.27
2045 2411 5.187621 TCCAACTACCCCTTCATAAAAGG 57.812 43.478 0.00 0.00 37.17 3.11
2046 2412 4.853276 TCCAACTACCCCTTCATAAAAGGA 59.147 41.667 5.39 0.00 39.81 3.36
2047 2413 5.313772 TCCAACTACCCCTTCATAAAAGGAA 59.686 40.000 5.39 0.00 39.81 3.36
2048 2414 6.014012 CCAACTACCCCTTCATAAAAGGAAA 58.986 40.000 5.39 0.00 39.81 3.13
2049 2415 6.667848 CCAACTACCCCTTCATAAAAGGAAAT 59.332 38.462 5.39 0.00 39.81 2.17
2050 2416 7.837187 CCAACTACCCCTTCATAAAAGGAAATA 59.163 37.037 5.39 0.00 39.81 1.40
2051 2417 9.421399 CAACTACCCCTTCATAAAAGGAAATAT 57.579 33.333 5.39 0.00 39.81 1.28
2056 2422 9.868160 ACCCCTTCATAAAAGGAAATATAAGAG 57.132 33.333 5.39 0.00 39.81 2.85
2057 2423 9.868160 CCCCTTCATAAAAGGAAATATAAGAGT 57.132 33.333 5.39 0.00 39.81 3.24
2077 2443 6.672147 AGAGTGTTTAGATGTTTTCATGTGC 58.328 36.000 0.00 0.00 41.05 4.57
2078 2444 6.262944 AGAGTGTTTAGATGTTTTCATGTGCA 59.737 34.615 0.00 0.00 41.05 4.57
2079 2445 6.441274 AGTGTTTAGATGTTTTCATGTGCAG 58.559 36.000 0.00 0.00 41.05 4.41
2080 2446 6.262944 AGTGTTTAGATGTTTTCATGTGCAGA 59.737 34.615 0.00 0.00 41.05 4.26
2081 2447 6.917477 GTGTTTAGATGTTTTCATGTGCAGAA 59.083 34.615 0.00 0.00 41.05 3.02
2082 2448 7.113965 GTGTTTAGATGTTTTCATGTGCAGAAG 59.886 37.037 0.00 0.00 41.05 2.85
2083 2449 7.013178 TGTTTAGATGTTTTCATGTGCAGAAGA 59.987 33.333 0.00 0.00 41.05 2.87
2084 2450 7.692460 TTAGATGTTTTCATGTGCAGAAGAT 57.308 32.000 0.00 0.00 41.05 2.40
2085 2451 6.585695 AGATGTTTTCATGTGCAGAAGATT 57.414 33.333 0.00 0.00 41.05 2.40
2086 2452 6.387465 AGATGTTTTCATGTGCAGAAGATTG 58.613 36.000 0.00 0.00 41.05 2.67
2087 2453 4.873817 TGTTTTCATGTGCAGAAGATTGG 58.126 39.130 0.00 0.00 0.00 3.16
2088 2454 4.583907 TGTTTTCATGTGCAGAAGATTGGA 59.416 37.500 0.00 0.00 0.00 3.53
2089 2455 5.159209 GTTTTCATGTGCAGAAGATTGGAG 58.841 41.667 0.00 0.00 0.00 3.86
2090 2456 3.708403 TCATGTGCAGAAGATTGGAGT 57.292 42.857 0.00 0.00 0.00 3.85
2091 2457 4.824479 TCATGTGCAGAAGATTGGAGTA 57.176 40.909 0.00 0.00 0.00 2.59
2092 2458 4.507710 TCATGTGCAGAAGATTGGAGTAC 58.492 43.478 0.00 0.00 0.00 2.73
2093 2459 4.020307 TCATGTGCAGAAGATTGGAGTACA 60.020 41.667 0.00 0.00 0.00 2.90
2094 2460 4.350368 TGTGCAGAAGATTGGAGTACAA 57.650 40.909 0.00 0.00 44.54 2.41
2095 2461 4.713553 TGTGCAGAAGATTGGAGTACAAA 58.286 39.130 0.00 0.00 43.46 2.83
2096 2462 5.129634 TGTGCAGAAGATTGGAGTACAAAA 58.870 37.500 0.00 0.00 43.46 2.44
2097 2463 5.239306 TGTGCAGAAGATTGGAGTACAAAAG 59.761 40.000 0.00 0.00 43.46 2.27
2098 2464 4.216257 TGCAGAAGATTGGAGTACAAAAGC 59.784 41.667 0.00 0.00 43.46 3.51
2099 2465 4.457257 GCAGAAGATTGGAGTACAAAAGCT 59.543 41.667 0.00 0.00 43.46 3.74
2100 2466 5.391416 GCAGAAGATTGGAGTACAAAAGCTC 60.391 44.000 0.00 0.00 43.46 4.09
2104 2470 3.154589 GGAGTACAAAAGCTCCGGG 57.845 57.895 0.00 0.00 41.40 5.73
2105 2471 1.025113 GGAGTACAAAAGCTCCGGGC 61.025 60.000 0.00 3.80 41.40 6.13
2135 2501 3.467119 CGAGGACGCGACAAACGG 61.467 66.667 15.93 0.00 42.83 4.44
2136 2502 3.774702 GAGGACGCGACAAACGGC 61.775 66.667 15.93 0.00 42.83 5.68
2139 2505 4.117372 GACGCGACAAACGGCGAG 62.117 66.667 15.93 5.45 41.25 5.03
2168 2534 4.338710 CGGGTCGGGCAAGGGAAA 62.339 66.667 0.00 0.00 0.00 3.13
2169 2535 2.675423 GGGTCGGGCAAGGGAAAC 60.675 66.667 0.00 0.00 0.00 2.78
2170 2536 2.434774 GGTCGGGCAAGGGAAACT 59.565 61.111 0.00 0.00 0.00 2.66
2171 2537 1.971695 GGTCGGGCAAGGGAAACTG 60.972 63.158 0.00 0.00 0.00 3.16
2172 2538 1.072505 GTCGGGCAAGGGAAACTGA 59.927 57.895 0.00 0.00 0.00 3.41
2173 2539 1.072505 TCGGGCAAGGGAAACTGAC 59.927 57.895 0.00 0.00 0.00 3.51
2174 2540 2.325082 CGGGCAAGGGAAACTGACG 61.325 63.158 0.00 0.00 0.00 4.35
2175 2541 1.971695 GGGCAAGGGAAACTGACGG 60.972 63.158 0.00 0.00 0.00 4.79
2176 2542 2.626780 GGCAAGGGAAACTGACGGC 61.627 63.158 0.00 0.00 0.00 5.68
2177 2543 2.966309 GCAAGGGAAACTGACGGCG 61.966 63.158 4.80 4.80 0.00 6.46
2178 2544 1.301401 CAAGGGAAACTGACGGCGA 60.301 57.895 16.62 0.00 0.00 5.54
2179 2545 1.004918 AAGGGAAACTGACGGCGAG 60.005 57.895 16.62 3.39 0.00 5.03
2180 2546 2.434359 GGGAAACTGACGGCGAGG 60.434 66.667 16.62 5.37 0.00 4.63
2181 2547 3.119096 GGAAACTGACGGCGAGGC 61.119 66.667 16.62 2.67 0.00 4.70
2182 2548 2.357034 GAAACTGACGGCGAGGCA 60.357 61.111 16.62 7.84 35.81 4.75
2183 2549 1.959226 GAAACTGACGGCGAGGCAA 60.959 57.895 16.62 0.00 37.47 4.52
2184 2550 2.171489 GAAACTGACGGCGAGGCAAC 62.171 60.000 16.62 0.00 37.47 4.17
2185 2551 4.681978 ACTGACGGCGAGGCAACC 62.682 66.667 16.62 0.00 37.47 3.77
2191 2557 4.373116 GGCGAGGCAACCGTGAGA 62.373 66.667 0.00 0.00 33.54 3.27
2192 2558 2.811317 GCGAGGCAACCGTGAGAG 60.811 66.667 0.00 0.00 33.54 3.20
2193 2559 2.125912 CGAGGCAACCGTGAGAGG 60.126 66.667 0.00 0.00 37.30 3.69
2194 2560 2.636412 CGAGGCAACCGTGAGAGGA 61.636 63.158 0.00 0.00 34.73 3.71
2195 2561 1.216710 GAGGCAACCGTGAGAGGAG 59.783 63.158 0.00 0.00 34.73 3.69
2196 2562 2.232298 GAGGCAACCGTGAGAGGAGG 62.232 65.000 0.00 0.00 34.73 4.30
2197 2563 2.283529 GGCAACCGTGAGAGGAGGA 61.284 63.158 0.00 0.00 34.73 3.71
2198 2564 1.617947 GGCAACCGTGAGAGGAGGAT 61.618 60.000 0.00 0.00 34.73 3.24
2199 2565 0.250513 GCAACCGTGAGAGGAGGATT 59.749 55.000 0.00 0.00 34.73 3.01
2200 2566 2.009042 GCAACCGTGAGAGGAGGATTG 61.009 57.143 0.00 0.00 34.73 2.67
2201 2567 1.276421 CAACCGTGAGAGGAGGATTGT 59.724 52.381 0.00 0.00 34.73 2.71
2202 2568 1.645710 ACCGTGAGAGGAGGATTGTT 58.354 50.000 0.00 0.00 34.73 2.83
2203 2569 1.550976 ACCGTGAGAGGAGGATTGTTC 59.449 52.381 0.00 0.00 34.73 3.18
2204 2570 1.827969 CCGTGAGAGGAGGATTGTTCT 59.172 52.381 0.00 0.00 0.00 3.01
2205 2571 2.417924 CCGTGAGAGGAGGATTGTTCTG 60.418 54.545 0.00 0.00 0.00 3.02
2206 2572 2.626840 GTGAGAGGAGGATTGTTCTGC 58.373 52.381 0.00 0.00 0.00 4.26
2207 2573 2.235898 GTGAGAGGAGGATTGTTCTGCT 59.764 50.000 0.00 0.00 35.62 4.24
2208 2574 2.499289 TGAGAGGAGGATTGTTCTGCTC 59.501 50.000 4.77 4.77 45.93 4.26
2209 2575 1.933247 GAGGAGGATTGTTCTGCTCG 58.067 55.000 0.00 0.00 39.28 5.03
2210 2576 1.478510 GAGGAGGATTGTTCTGCTCGA 59.521 52.381 0.00 0.00 39.28 4.04
2211 2577 2.102252 GAGGAGGATTGTTCTGCTCGAT 59.898 50.000 0.00 0.00 39.28 3.59
2212 2578 2.158986 AGGAGGATTGTTCTGCTCGATG 60.159 50.000 0.00 0.00 0.00 3.84
2213 2579 2.159043 GGAGGATTGTTCTGCTCGATGA 60.159 50.000 0.00 0.00 0.00 2.92
2214 2580 2.863137 GAGGATTGTTCTGCTCGATGAC 59.137 50.000 0.00 0.00 0.00 3.06
2215 2581 1.936547 GGATTGTTCTGCTCGATGACC 59.063 52.381 0.00 0.00 0.00 4.02
2216 2582 1.590238 GATTGTTCTGCTCGATGACCG 59.410 52.381 0.00 0.00 40.25 4.79
2217 2583 0.317160 TTGTTCTGCTCGATGACCGT 59.683 50.000 0.00 0.00 39.75 4.83
2218 2584 0.388520 TGTTCTGCTCGATGACCGTG 60.389 55.000 0.00 0.00 39.75 4.94
2219 2585 1.078759 GTTCTGCTCGATGACCGTGG 61.079 60.000 0.00 0.00 39.75 4.94
2220 2586 1.248101 TTCTGCTCGATGACCGTGGA 61.248 55.000 0.00 0.00 39.75 4.02
2221 2587 1.037579 TCTGCTCGATGACCGTGGAT 61.038 55.000 0.00 0.00 39.75 3.41
2222 2588 0.873312 CTGCTCGATGACCGTGGATG 60.873 60.000 0.00 0.00 39.75 3.51
2223 2589 1.141881 GCTCGATGACCGTGGATGT 59.858 57.895 0.00 0.00 39.75 3.06
2224 2590 1.148157 GCTCGATGACCGTGGATGTG 61.148 60.000 0.00 0.00 39.75 3.21
2225 2591 1.148157 CTCGATGACCGTGGATGTGC 61.148 60.000 0.00 0.00 39.75 4.57
2226 2592 1.153568 CGATGACCGTGGATGTGCT 60.154 57.895 0.00 0.00 0.00 4.40
2227 2593 1.423721 CGATGACCGTGGATGTGCTG 61.424 60.000 0.00 0.00 0.00 4.41
2228 2594 1.709147 GATGACCGTGGATGTGCTGC 61.709 60.000 0.00 0.00 0.00 5.25
2229 2595 2.046892 GACCGTGGATGTGCTGCT 60.047 61.111 0.00 0.00 0.00 4.24
2230 2596 2.046892 ACCGTGGATGTGCTGCTC 60.047 61.111 0.00 0.00 0.00 4.26
2231 2597 2.821366 CCGTGGATGTGCTGCTCC 60.821 66.667 0.00 0.00 0.00 4.70
2232 2598 2.821366 CGTGGATGTGCTGCTCCC 60.821 66.667 0.00 0.00 0.00 4.30
2233 2599 2.673523 GTGGATGTGCTGCTCCCT 59.326 61.111 0.00 0.00 0.00 4.20
2234 2600 1.748122 GTGGATGTGCTGCTCCCTG 60.748 63.158 0.00 0.00 0.00 4.45
2235 2601 2.124403 GGATGTGCTGCTCCCTGG 60.124 66.667 0.00 0.00 0.00 4.45
2236 2602 2.673200 GGATGTGCTGCTCCCTGGA 61.673 63.158 0.00 0.00 0.00 3.86
2237 2603 1.530771 GATGTGCTGCTCCCTGGAT 59.469 57.895 0.00 0.00 0.00 3.41
2238 2604 0.106819 GATGTGCTGCTCCCTGGATT 60.107 55.000 0.00 0.00 0.00 3.01
2239 2605 0.395311 ATGTGCTGCTCCCTGGATTG 60.395 55.000 0.00 0.00 0.00 2.67
2240 2606 2.044650 TGCTGCTCCCTGGATTGC 60.045 61.111 0.00 0.00 0.00 3.56
2241 2607 3.207669 GCTGCTCCCTGGATTGCG 61.208 66.667 0.00 0.00 0.00 4.85
2242 2608 2.270205 CTGCTCCCTGGATTGCGT 59.730 61.111 0.00 0.00 0.00 5.24
2243 2609 1.377725 CTGCTCCCTGGATTGCGTT 60.378 57.895 0.00 0.00 0.00 4.84
2244 2610 0.107703 CTGCTCCCTGGATTGCGTTA 60.108 55.000 0.00 0.00 0.00 3.18
2245 2611 0.546122 TGCTCCCTGGATTGCGTTAT 59.454 50.000 0.00 0.00 0.00 1.89
2246 2612 1.064758 TGCTCCCTGGATTGCGTTATT 60.065 47.619 0.00 0.00 0.00 1.40
2247 2613 1.334869 GCTCCCTGGATTGCGTTATTG 59.665 52.381 0.00 0.00 0.00 1.90
2248 2614 1.949525 CTCCCTGGATTGCGTTATTGG 59.050 52.381 0.00 0.00 0.00 3.16
2249 2615 1.562008 TCCCTGGATTGCGTTATTGGA 59.438 47.619 0.00 0.00 0.00 3.53
2250 2616 1.676006 CCCTGGATTGCGTTATTGGAC 59.324 52.381 0.00 0.00 0.00 4.02
2251 2617 1.676006 CCTGGATTGCGTTATTGGACC 59.324 52.381 0.00 0.00 0.00 4.46
2252 2618 1.330521 CTGGATTGCGTTATTGGACCG 59.669 52.381 0.00 0.00 0.00 4.79
2253 2619 1.339247 TGGATTGCGTTATTGGACCGT 60.339 47.619 0.00 0.00 0.00 4.83
2254 2620 1.741145 GGATTGCGTTATTGGACCGTT 59.259 47.619 0.00 0.00 0.00 4.44
2255 2621 2.162809 GGATTGCGTTATTGGACCGTTT 59.837 45.455 0.00 0.00 0.00 3.60
2256 2622 3.366577 GGATTGCGTTATTGGACCGTTTT 60.367 43.478 0.00 0.00 0.00 2.43
2257 2623 3.712091 TTGCGTTATTGGACCGTTTTT 57.288 38.095 0.00 0.00 0.00 1.94
2300 2666 8.760980 AGAGACATAGGTATATAAGCAGATCC 57.239 38.462 0.00 0.00 0.00 3.36
2301 2667 8.340002 AGAGACATAGGTATATAAGCAGATCCA 58.660 37.037 0.00 0.00 0.00 3.41
2302 2668 8.901472 AGACATAGGTATATAAGCAGATCCAA 57.099 34.615 0.00 0.00 0.00 3.53
2303 2669 9.326489 AGACATAGGTATATAAGCAGATCCAAA 57.674 33.333 0.00 0.00 0.00 3.28
2304 2670 9.944376 GACATAGGTATATAAGCAGATCCAAAA 57.056 33.333 0.00 0.00 0.00 2.44
2308 2674 7.106239 AGGTATATAAGCAGATCCAAAATCCG 58.894 38.462 0.00 0.00 0.00 4.18
2309 2675 5.886960 ATATAAGCAGATCCAAAATCCGC 57.113 39.130 0.00 0.00 0.00 5.54
2310 2676 1.106285 AAGCAGATCCAAAATCCGCC 58.894 50.000 0.00 0.00 0.00 6.13
2311 2677 0.753111 AGCAGATCCAAAATCCGCCC 60.753 55.000 0.00 0.00 0.00 6.13
2312 2678 0.753111 GCAGATCCAAAATCCGCCCT 60.753 55.000 0.00 0.00 0.00 5.19
2313 2679 1.476833 GCAGATCCAAAATCCGCCCTA 60.477 52.381 0.00 0.00 0.00 3.53
2314 2680 2.498167 CAGATCCAAAATCCGCCCTAG 58.502 52.381 0.00 0.00 0.00 3.02
2315 2681 1.202818 AGATCCAAAATCCGCCCTAGC 60.203 52.381 0.00 0.00 0.00 3.42
2316 2682 0.178990 ATCCAAAATCCGCCCTAGCC 60.179 55.000 0.00 0.00 34.57 3.93
2317 2683 1.077068 CCAAAATCCGCCCTAGCCA 60.077 57.895 0.00 0.00 34.57 4.75
2318 2684 1.384222 CCAAAATCCGCCCTAGCCAC 61.384 60.000 0.00 0.00 34.57 5.01
2319 2685 1.076995 AAAATCCGCCCTAGCCACC 60.077 57.895 0.00 0.00 34.57 4.61
2320 2686 2.567664 AAAATCCGCCCTAGCCACCC 62.568 60.000 0.00 0.00 34.57 4.61
2321 2687 4.499116 ATCCGCCCTAGCCACCCT 62.499 66.667 0.00 0.00 34.57 4.34
2324 2690 2.762459 CGCCCTAGCCACCCTGTA 60.762 66.667 0.00 0.00 34.57 2.74
2325 2691 2.797278 CGCCCTAGCCACCCTGTAG 61.797 68.421 0.00 0.00 34.57 2.74
2326 2692 1.382695 GCCCTAGCCACCCTGTAGA 60.383 63.158 0.00 0.00 0.00 2.59
2327 2693 0.764752 GCCCTAGCCACCCTGTAGAT 60.765 60.000 0.00 0.00 0.00 1.98
2328 2694 1.343069 CCCTAGCCACCCTGTAGATC 58.657 60.000 0.00 0.00 0.00 2.75
2329 2695 1.343069 CCTAGCCACCCTGTAGATCC 58.657 60.000 0.00 0.00 0.00 3.36
2330 2696 0.962489 CTAGCCACCCTGTAGATCCG 59.038 60.000 0.00 0.00 0.00 4.18
2331 2697 1.113517 TAGCCACCCTGTAGATCCGC 61.114 60.000 0.00 0.00 0.00 5.54
2332 2698 2.822399 CCACCCTGTAGATCCGCC 59.178 66.667 0.00 0.00 0.00 6.13
2333 2699 2.063979 CCACCCTGTAGATCCGCCA 61.064 63.158 0.00 0.00 0.00 5.69
2334 2700 1.144057 CACCCTGTAGATCCGCCAC 59.856 63.158 0.00 0.00 0.00 5.01
2335 2701 1.001760 ACCCTGTAGATCCGCCACT 59.998 57.895 0.00 0.00 0.00 4.00
2336 2702 1.330655 ACCCTGTAGATCCGCCACTG 61.331 60.000 0.00 0.00 0.00 3.66
2337 2703 1.227380 CCTGTAGATCCGCCACTGC 60.227 63.158 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.566197 AAACCAAAACTTTGCAACATCAAA 57.434 29.167 0.00 0.00 36.86 2.69
2 3 6.566197 AAAAACCAAAACTTTGCAACATCA 57.434 29.167 0.00 0.00 36.86 3.07
36 37 8.736244 GCACCCTCTATGAACAGTAAATTAAAA 58.264 33.333 0.00 0.00 0.00 1.52
37 38 7.338449 GGCACCCTCTATGAACAGTAAATTAAA 59.662 37.037 0.00 0.00 0.00 1.52
38 39 6.826741 GGCACCCTCTATGAACAGTAAATTAA 59.173 38.462 0.00 0.00 0.00 1.40
39 40 6.157994 AGGCACCCTCTATGAACAGTAAATTA 59.842 38.462 0.00 0.00 0.00 1.40
40 41 5.044846 AGGCACCCTCTATGAACAGTAAATT 60.045 40.000 0.00 0.00 0.00 1.82
41 42 4.475016 AGGCACCCTCTATGAACAGTAAAT 59.525 41.667 0.00 0.00 0.00 1.40
42 43 3.844211 AGGCACCCTCTATGAACAGTAAA 59.156 43.478 0.00 0.00 0.00 2.01
43 44 3.450904 AGGCACCCTCTATGAACAGTAA 58.549 45.455 0.00 0.00 0.00 2.24
44 45 3.116096 AGGCACCCTCTATGAACAGTA 57.884 47.619 0.00 0.00 0.00 2.74
45 46 1.958288 AGGCACCCTCTATGAACAGT 58.042 50.000 0.00 0.00 0.00 3.55
46 47 2.366916 CCTAGGCACCCTCTATGAACAG 59.633 54.545 0.00 0.00 34.61 3.16
47 48 2.398588 CCTAGGCACCCTCTATGAACA 58.601 52.381 0.00 0.00 34.61 3.18
48 49 1.070914 GCCTAGGCACCCTCTATGAAC 59.929 57.143 29.33 0.00 41.49 3.18
49 50 1.424638 GCCTAGGCACCCTCTATGAA 58.575 55.000 29.33 0.00 41.49 2.57
50 51 3.149436 GCCTAGGCACCCTCTATGA 57.851 57.895 29.33 0.00 41.49 2.15
61 62 4.858680 GCTTCCGGGTGCCTAGGC 62.859 72.222 27.71 27.71 42.35 3.93
62 63 1.122019 ATAGCTTCCGGGTGCCTAGG 61.122 60.000 3.67 3.67 0.00 3.02
63 64 0.318762 GATAGCTTCCGGGTGCCTAG 59.681 60.000 14.34 0.00 0.00 3.02
64 65 0.397957 TGATAGCTTCCGGGTGCCTA 60.398 55.000 14.34 5.48 0.00 3.93
65 66 1.689233 TGATAGCTTCCGGGTGCCT 60.689 57.895 14.34 4.45 0.00 4.75
66 67 1.523938 GTGATAGCTTCCGGGTGCC 60.524 63.158 14.34 2.64 0.00 5.01
67 68 1.090052 GTGTGATAGCTTCCGGGTGC 61.090 60.000 0.00 6.54 0.00 5.01
68 69 0.462047 GGTGTGATAGCTTCCGGGTG 60.462 60.000 0.00 0.00 0.00 4.61
69 70 0.617820 AGGTGTGATAGCTTCCGGGT 60.618 55.000 0.00 0.00 31.87 5.28
70 71 0.541863 AAGGTGTGATAGCTTCCGGG 59.458 55.000 0.00 0.00 43.30 5.73
71 72 2.403252 AAAGGTGTGATAGCTTCCGG 57.597 50.000 0.00 0.00 45.88 5.14
89 90 7.873505 AGCAAACACTAACTACCAAAACAAAAA 59.126 29.630 0.00 0.00 0.00 1.94
90 91 7.329717 CAGCAAACACTAACTACCAAAACAAAA 59.670 33.333 0.00 0.00 0.00 2.44
91 92 6.809196 CAGCAAACACTAACTACCAAAACAAA 59.191 34.615 0.00 0.00 0.00 2.83
92 93 6.326375 CAGCAAACACTAACTACCAAAACAA 58.674 36.000 0.00 0.00 0.00 2.83
93 94 5.677598 GCAGCAAACACTAACTACCAAAACA 60.678 40.000 0.00 0.00 0.00 2.83
94 95 4.738252 GCAGCAAACACTAACTACCAAAAC 59.262 41.667 0.00 0.00 0.00 2.43
95 96 4.496673 CGCAGCAAACACTAACTACCAAAA 60.497 41.667 0.00 0.00 0.00 2.44
96 97 3.002862 CGCAGCAAACACTAACTACCAAA 59.997 43.478 0.00 0.00 0.00 3.28
97 98 2.546368 CGCAGCAAACACTAACTACCAA 59.454 45.455 0.00 0.00 0.00 3.67
98 99 2.139917 CGCAGCAAACACTAACTACCA 58.860 47.619 0.00 0.00 0.00 3.25
99 100 2.096417 CACGCAGCAAACACTAACTACC 60.096 50.000 0.00 0.00 0.00 3.18
100 101 2.542595 ACACGCAGCAAACACTAACTAC 59.457 45.455 0.00 0.00 0.00 2.73
101 102 2.828877 ACACGCAGCAAACACTAACTA 58.171 42.857 0.00 0.00 0.00 2.24
102 103 1.663695 ACACGCAGCAAACACTAACT 58.336 45.000 0.00 0.00 0.00 2.24
103 104 2.223157 TGAACACGCAGCAAACACTAAC 60.223 45.455 0.00 0.00 0.00 2.34
104 105 2.010497 TGAACACGCAGCAAACACTAA 58.990 42.857 0.00 0.00 0.00 2.24
105 106 1.657822 TGAACACGCAGCAAACACTA 58.342 45.000 0.00 0.00 0.00 2.74
106 107 1.024271 ATGAACACGCAGCAAACACT 58.976 45.000 0.00 0.00 0.00 3.55
107 108 1.122849 CATGAACACGCAGCAAACAC 58.877 50.000 0.00 0.00 0.00 3.32
108 109 1.020437 TCATGAACACGCAGCAAACA 58.980 45.000 0.00 0.00 0.00 2.83
109 110 2.118228 TTCATGAACACGCAGCAAAC 57.882 45.000 3.38 0.00 0.00 2.93
110 111 2.859526 TTTCATGAACACGCAGCAAA 57.140 40.000 7.89 0.00 0.00 3.68
111 112 3.004629 AGAATTTCATGAACACGCAGCAA 59.995 39.130 7.89 0.00 0.00 3.91
112 113 2.553602 AGAATTTCATGAACACGCAGCA 59.446 40.909 7.89 0.00 0.00 4.41
113 114 3.120060 AGAGAATTTCATGAACACGCAGC 60.120 43.478 7.89 0.00 0.00 5.25
114 115 4.675190 AGAGAATTTCATGAACACGCAG 57.325 40.909 7.89 0.00 0.00 5.18
115 116 4.786507 CAAGAGAATTTCATGAACACGCA 58.213 39.130 7.89 0.00 0.00 5.24
116 117 3.605486 GCAAGAGAATTTCATGAACACGC 59.395 43.478 7.89 4.68 0.00 5.34
117 118 4.161333 GGCAAGAGAATTTCATGAACACG 58.839 43.478 7.89 0.00 0.00 4.49
118 119 4.219288 AGGGCAAGAGAATTTCATGAACAC 59.781 41.667 7.89 2.76 0.00 3.32
119 120 4.219070 CAGGGCAAGAGAATTTCATGAACA 59.781 41.667 7.89 0.11 0.00 3.18
120 121 4.741342 CAGGGCAAGAGAATTTCATGAAC 58.259 43.478 7.89 0.00 0.00 3.18
121 122 3.194116 GCAGGGCAAGAGAATTTCATGAA 59.806 43.478 3.38 3.38 0.00 2.57
122 123 2.756760 GCAGGGCAAGAGAATTTCATGA 59.243 45.455 0.00 0.00 0.00 3.07
123 124 2.159142 GGCAGGGCAAGAGAATTTCATG 60.159 50.000 0.00 0.00 0.00 3.07
124 125 2.105766 GGCAGGGCAAGAGAATTTCAT 58.894 47.619 0.00 0.00 0.00 2.57
125 126 1.549203 GGCAGGGCAAGAGAATTTCA 58.451 50.000 0.00 0.00 0.00 2.69
126 127 0.820226 GGGCAGGGCAAGAGAATTTC 59.180 55.000 0.00 0.00 0.00 2.17
127 128 0.411058 AGGGCAGGGCAAGAGAATTT 59.589 50.000 0.00 0.00 0.00 1.82
128 129 1.298953 TAGGGCAGGGCAAGAGAATT 58.701 50.000 0.00 0.00 0.00 2.17
129 130 1.144503 CATAGGGCAGGGCAAGAGAAT 59.855 52.381 0.00 0.00 0.00 2.40
130 131 0.548031 CATAGGGCAGGGCAAGAGAA 59.452 55.000 0.00 0.00 0.00 2.87
131 132 0.621571 ACATAGGGCAGGGCAAGAGA 60.622 55.000 0.00 0.00 0.00 3.10
132 133 0.257039 AACATAGGGCAGGGCAAGAG 59.743 55.000 0.00 0.00 0.00 2.85
133 134 1.590591 TAACATAGGGCAGGGCAAGA 58.409 50.000 0.00 0.00 0.00 3.02
134 135 2.624838 CAATAACATAGGGCAGGGCAAG 59.375 50.000 0.00 0.00 0.00 4.01
135 136 2.024464 ACAATAACATAGGGCAGGGCAA 60.024 45.455 0.00 0.00 0.00 4.52
136 137 1.568597 ACAATAACATAGGGCAGGGCA 59.431 47.619 0.00 0.00 0.00 5.36
137 138 1.956477 CACAATAACATAGGGCAGGGC 59.044 52.381 0.00 0.00 0.00 5.19
138 139 2.174639 TCCACAATAACATAGGGCAGGG 59.825 50.000 0.00 0.00 0.00 4.45
139 140 3.117888 ACTCCACAATAACATAGGGCAGG 60.118 47.826 0.00 0.00 0.00 4.85
140 141 4.156455 ACTCCACAATAACATAGGGCAG 57.844 45.455 0.00 0.00 0.00 4.85
141 142 4.269183 CAACTCCACAATAACATAGGGCA 58.731 43.478 0.00 0.00 0.00 5.36
142 143 3.632145 CCAACTCCACAATAACATAGGGC 59.368 47.826 0.00 0.00 0.00 5.19
143 144 5.110814 TCCAACTCCACAATAACATAGGG 57.889 43.478 0.00 0.00 0.00 3.53
144 145 4.576463 GCTCCAACTCCACAATAACATAGG 59.424 45.833 0.00 0.00 0.00 2.57
145 146 5.431765 AGCTCCAACTCCACAATAACATAG 58.568 41.667 0.00 0.00 0.00 2.23
146 147 5.435686 AGCTCCAACTCCACAATAACATA 57.564 39.130 0.00 0.00 0.00 2.29
147 148 4.307032 AGCTCCAACTCCACAATAACAT 57.693 40.909 0.00 0.00 0.00 2.71
148 149 3.788227 AGCTCCAACTCCACAATAACA 57.212 42.857 0.00 0.00 0.00 2.41
149 150 7.859325 TTTATAGCTCCAACTCCACAATAAC 57.141 36.000 0.00 0.00 0.00 1.89
150 151 8.271458 TCATTTATAGCTCCAACTCCACAATAA 58.729 33.333 0.00 0.00 0.00 1.40
151 152 7.801104 TCATTTATAGCTCCAACTCCACAATA 58.199 34.615 0.00 0.00 0.00 1.90
152 153 6.662755 TCATTTATAGCTCCAACTCCACAAT 58.337 36.000 0.00 0.00 0.00 2.71
153 154 6.061022 TCATTTATAGCTCCAACTCCACAA 57.939 37.500 0.00 0.00 0.00 3.33
154 155 5.396772 CCTCATTTATAGCTCCAACTCCACA 60.397 44.000 0.00 0.00 0.00 4.17
155 156 5.059833 CCTCATTTATAGCTCCAACTCCAC 58.940 45.833 0.00 0.00 0.00 4.02
156 157 4.721776 ACCTCATTTATAGCTCCAACTCCA 59.278 41.667 0.00 0.00 0.00 3.86
157 158 5.297569 ACCTCATTTATAGCTCCAACTCC 57.702 43.478 0.00 0.00 0.00 3.85
158 159 5.301555 GGACCTCATTTATAGCTCCAACTC 58.698 45.833 0.00 0.00 0.00 3.01
159 160 4.103311 GGGACCTCATTTATAGCTCCAACT 59.897 45.833 0.00 0.00 0.00 3.16
160 161 4.103311 AGGGACCTCATTTATAGCTCCAAC 59.897 45.833 0.00 0.00 0.00 3.77
161 162 4.307259 AGGGACCTCATTTATAGCTCCAA 58.693 43.478 0.00 0.00 0.00 3.53
162 163 3.941629 AGGGACCTCATTTATAGCTCCA 58.058 45.455 0.00 0.00 0.00 3.86
163 164 4.505742 CCAAGGGACCTCATTTATAGCTCC 60.506 50.000 0.00 0.00 0.00 4.70
164 165 4.646572 CCAAGGGACCTCATTTATAGCTC 58.353 47.826 0.00 0.00 0.00 4.09
165 166 3.181439 GCCAAGGGACCTCATTTATAGCT 60.181 47.826 0.00 0.00 0.00 3.32
166 167 3.149981 GCCAAGGGACCTCATTTATAGC 58.850 50.000 0.00 0.00 0.00 2.97
167 168 3.181454 ACGCCAAGGGACCTCATTTATAG 60.181 47.826 0.00 0.00 0.00 1.31
168 169 2.775384 ACGCCAAGGGACCTCATTTATA 59.225 45.455 0.00 0.00 0.00 0.98
169 170 1.564348 ACGCCAAGGGACCTCATTTAT 59.436 47.619 0.00 0.00 0.00 1.40
170 171 0.988832 ACGCCAAGGGACCTCATTTA 59.011 50.000 0.00 0.00 0.00 1.40
171 172 0.609131 CACGCCAAGGGACCTCATTT 60.609 55.000 0.00 0.00 0.00 2.32
172 173 1.002134 CACGCCAAGGGACCTCATT 60.002 57.895 0.00 0.00 0.00 2.57
173 174 1.918293 TCACGCCAAGGGACCTCAT 60.918 57.895 0.00 0.00 0.00 2.90
174 175 2.525629 TCACGCCAAGGGACCTCA 60.526 61.111 0.00 0.00 0.00 3.86
179 180 2.264480 CATCGTCACGCCAAGGGA 59.736 61.111 0.00 0.00 0.00 4.20
180 181 2.100631 GTCATCGTCACGCCAAGGG 61.101 63.158 0.00 0.00 0.00 3.95
181 182 1.374125 TGTCATCGTCACGCCAAGG 60.374 57.895 0.00 0.00 0.00 3.61
182 183 1.781555 GTGTCATCGTCACGCCAAG 59.218 57.895 0.00 0.00 0.00 3.61
183 184 3.945436 GTGTCATCGTCACGCCAA 58.055 55.556 0.00 0.00 0.00 4.52
188 189 2.355132 ACCTATCTCGTGTCATCGTCAC 59.645 50.000 0.00 0.00 0.00 3.67
189 190 2.354821 CACCTATCTCGTGTCATCGTCA 59.645 50.000 0.00 0.00 0.00 4.35
190 191 2.355132 ACACCTATCTCGTGTCATCGTC 59.645 50.000 0.00 0.00 40.40 4.20
191 192 2.366533 ACACCTATCTCGTGTCATCGT 58.633 47.619 0.00 0.00 40.40 3.73
192 193 3.364062 GAACACCTATCTCGTGTCATCG 58.636 50.000 0.00 0.00 43.56 3.84
193 194 3.364062 CGAACACCTATCTCGTGTCATC 58.636 50.000 0.00 0.00 43.56 2.92
194 195 2.099263 CCGAACACCTATCTCGTGTCAT 59.901 50.000 0.00 0.00 43.56 3.06
195 196 1.471287 CCGAACACCTATCTCGTGTCA 59.529 52.381 0.00 0.00 43.56 3.58
196 197 1.471684 ACCGAACACCTATCTCGTGTC 59.528 52.381 0.00 0.00 43.56 3.67
197 198 1.542492 ACCGAACACCTATCTCGTGT 58.458 50.000 0.00 0.00 46.25 4.49
198 199 2.259618 CAACCGAACACCTATCTCGTG 58.740 52.381 0.00 0.00 37.26 4.35
199 200 1.403780 GCAACCGAACACCTATCTCGT 60.404 52.381 0.00 0.00 0.00 4.18
200 201 1.278238 GCAACCGAACACCTATCTCG 58.722 55.000 0.00 0.00 0.00 4.04
201 202 2.271800 CTGCAACCGAACACCTATCTC 58.728 52.381 0.00 0.00 0.00 2.75
202 203 1.066143 CCTGCAACCGAACACCTATCT 60.066 52.381 0.00 0.00 0.00 1.98
203 204 1.369625 CCTGCAACCGAACACCTATC 58.630 55.000 0.00 0.00 0.00 2.08
204 205 0.035439 CCCTGCAACCGAACACCTAT 60.035 55.000 0.00 0.00 0.00 2.57
205 206 1.373435 CCCTGCAACCGAACACCTA 59.627 57.895 0.00 0.00 0.00 3.08
206 207 1.412453 TACCCTGCAACCGAACACCT 61.412 55.000 0.00 0.00 0.00 4.00
207 208 0.322187 ATACCCTGCAACCGAACACC 60.322 55.000 0.00 0.00 0.00 4.16
208 209 0.802494 CATACCCTGCAACCGAACAC 59.198 55.000 0.00 0.00 0.00 3.32
209 210 0.322098 CCATACCCTGCAACCGAACA 60.322 55.000 0.00 0.00 0.00 3.18
210 211 0.322187 ACCATACCCTGCAACCGAAC 60.322 55.000 0.00 0.00 0.00 3.95
211 212 0.035820 GACCATACCCTGCAACCGAA 60.036 55.000 0.00 0.00 0.00 4.30
212 213 1.195442 TGACCATACCCTGCAACCGA 61.195 55.000 0.00 0.00 0.00 4.69
213 214 0.107214 ATGACCATACCCTGCAACCG 60.107 55.000 0.00 0.00 0.00 4.44
214 215 1.680338 GATGACCATACCCTGCAACC 58.320 55.000 0.00 0.00 0.00 3.77
215 216 1.299541 CGATGACCATACCCTGCAAC 58.700 55.000 0.00 0.00 0.00 4.17
216 217 0.908910 ACGATGACCATACCCTGCAA 59.091 50.000 0.00 0.00 0.00 4.08
217 218 1.686587 CTACGATGACCATACCCTGCA 59.313 52.381 0.00 0.00 0.00 4.41
218 219 1.000955 CCTACGATGACCATACCCTGC 59.999 57.143 0.00 0.00 0.00 4.85
219 220 2.594131 TCCTACGATGACCATACCCTG 58.406 52.381 0.00 0.00 0.00 4.45
220 221 3.544698 ATCCTACGATGACCATACCCT 57.455 47.619 0.00 0.00 0.00 4.34
221 222 3.306780 CCAATCCTACGATGACCATACCC 60.307 52.174 0.00 0.00 0.00 3.69
222 223 3.323979 ACCAATCCTACGATGACCATACC 59.676 47.826 0.00 0.00 0.00 2.73
223 224 4.307432 CACCAATCCTACGATGACCATAC 58.693 47.826 0.00 0.00 0.00 2.39
224 225 3.323691 CCACCAATCCTACGATGACCATA 59.676 47.826 0.00 0.00 0.00 2.74
225 226 2.104792 CCACCAATCCTACGATGACCAT 59.895 50.000 0.00 0.00 0.00 3.55
226 227 1.484653 CCACCAATCCTACGATGACCA 59.515 52.381 0.00 0.00 0.00 4.02
227 228 1.810412 GCCACCAATCCTACGATGACC 60.810 57.143 0.00 0.00 0.00 4.02
228 229 1.583054 GCCACCAATCCTACGATGAC 58.417 55.000 0.00 0.00 0.00 3.06
229 230 0.468226 GGCCACCAATCCTACGATGA 59.532 55.000 0.00 0.00 0.00 2.92
230 231 0.469917 AGGCCACCAATCCTACGATG 59.530 55.000 5.01 0.00 0.00 3.84
231 232 2.097110 TAGGCCACCAATCCTACGAT 57.903 50.000 5.01 0.00 34.02 3.73
232 233 1.483415 GTTAGGCCACCAATCCTACGA 59.517 52.381 5.01 0.00 34.87 3.43
233 234 1.485066 AGTTAGGCCACCAATCCTACG 59.515 52.381 5.01 0.00 34.87 3.51
234 235 3.710165 ACTAGTTAGGCCACCAATCCTAC 59.290 47.826 5.01 0.00 34.87 3.18
235 236 4.003584 ACTAGTTAGGCCACCAATCCTA 57.996 45.455 5.01 0.00 34.02 2.94
236 237 2.846950 ACTAGTTAGGCCACCAATCCT 58.153 47.619 5.01 0.00 36.51 3.24
237 238 3.492137 CGTACTAGTTAGGCCACCAATCC 60.492 52.174 5.01 0.00 0.00 3.01
238 239 3.131755 ACGTACTAGTTAGGCCACCAATC 59.868 47.826 5.01 0.00 0.00 2.67
239 240 3.102204 ACGTACTAGTTAGGCCACCAAT 58.898 45.455 5.01 0.00 0.00 3.16
240 241 2.528564 ACGTACTAGTTAGGCCACCAA 58.471 47.619 5.01 0.00 0.00 3.67
241 242 2.220653 ACGTACTAGTTAGGCCACCA 57.779 50.000 5.01 0.00 0.00 4.17
242 243 5.299279 TGTTATACGTACTAGTTAGGCCACC 59.701 44.000 5.01 0.00 0.00 4.61
249 250 8.382030 TGCTGCTATGTTATACGTACTAGTTA 57.618 34.615 0.00 0.00 0.00 2.24
279 280 7.362401 GGCTTCTGTGTATGACAAATTCTGAAT 60.362 37.037 0.00 0.00 32.80 2.57
387 411 3.551863 GGCTACAGATCACAGATCGAAGG 60.552 52.174 0.00 0.00 0.00 3.46
415 443 4.467795 TCCTCCTTGACTTGATTGACTAGG 59.532 45.833 0.00 0.00 0.00 3.02
429 458 2.439507 AGTCAAGTGCTTTCCTCCTTGA 59.560 45.455 0.00 0.00 40.57 3.02
430 459 2.856222 AGTCAAGTGCTTTCCTCCTTG 58.144 47.619 0.00 0.00 36.49 3.61
431 460 4.706842 TTAGTCAAGTGCTTTCCTCCTT 57.293 40.909 0.00 0.00 0.00 3.36
432 461 4.917906 ATTAGTCAAGTGCTTTCCTCCT 57.082 40.909 0.00 0.00 0.00 3.69
433 462 5.813157 GTCTATTAGTCAAGTGCTTTCCTCC 59.187 44.000 0.00 0.00 0.00 4.30
434 463 6.311690 GTGTCTATTAGTCAAGTGCTTTCCTC 59.688 42.308 0.00 0.00 0.00 3.71
435 464 6.166982 GTGTCTATTAGTCAAGTGCTTTCCT 58.833 40.000 0.00 0.00 0.00 3.36
436 465 5.932303 TGTGTCTATTAGTCAAGTGCTTTCC 59.068 40.000 0.00 0.00 0.00 3.13
437 466 7.331934 TCATGTGTCTATTAGTCAAGTGCTTTC 59.668 37.037 0.00 0.00 0.00 2.62
438 467 7.161404 TCATGTGTCTATTAGTCAAGTGCTTT 58.839 34.615 0.00 0.00 0.00 3.51
439 468 6.701340 TCATGTGTCTATTAGTCAAGTGCTT 58.299 36.000 0.00 0.00 0.00 3.91
440 469 6.286240 TCATGTGTCTATTAGTCAAGTGCT 57.714 37.500 0.00 0.00 0.00 4.40
441 470 6.813649 TCTTCATGTGTCTATTAGTCAAGTGC 59.186 38.462 0.00 0.00 0.00 4.40
442 471 8.939201 ATCTTCATGTGTCTATTAGTCAAGTG 57.061 34.615 0.00 0.00 0.00 3.16
443 472 8.976353 AGATCTTCATGTGTCTATTAGTCAAGT 58.024 33.333 0.00 0.00 0.00 3.16
444 473 9.462174 GAGATCTTCATGTGTCTATTAGTCAAG 57.538 37.037 0.00 0.00 0.00 3.02
445 474 8.971073 TGAGATCTTCATGTGTCTATTAGTCAA 58.029 33.333 0.00 0.00 0.00 3.18
446 475 8.409371 GTGAGATCTTCATGTGTCTATTAGTCA 58.591 37.037 0.00 0.00 38.29 3.41
447 476 7.865385 GGTGAGATCTTCATGTGTCTATTAGTC 59.135 40.741 0.00 0.00 38.29 2.59
945 980 2.422945 CCCTCCTGCAATAAACCTACCC 60.423 54.545 0.00 0.00 0.00 3.69
1087 1122 2.363306 TGCATTGTCTCAACCACCTT 57.637 45.000 0.00 0.00 0.00 3.50
1455 1491 3.989698 ATGGGTGCGTTCGAGCGAG 62.990 63.158 26.26 0.00 40.67 5.03
1456 1492 4.063967 ATGGGTGCGTTCGAGCGA 62.064 61.111 26.26 7.75 40.67 4.93
1458 1494 4.166011 GCATGGGTGCGTTCGAGC 62.166 66.667 0.00 0.00 42.28 5.03
1558 1609 7.979786 TTTGGAACTAGACTAGATGGAGAAT 57.020 36.000 16.55 0.00 0.00 2.40
1663 1867 3.833442 CGCTCGATATAGCACACCAATA 58.167 45.455 0.00 0.00 42.91 1.90
1679 1883 0.026156 TTGCAAATACATCGCGCTCG 59.974 50.000 5.56 0.00 0.00 5.03
1739 1943 4.465305 GGTAGTAGCCTCTTGTGTTTCCTA 59.535 45.833 0.00 0.00 0.00 2.94
1747 1957 2.119495 CATGGGGTAGTAGCCTCTTGT 58.881 52.381 17.68 0.00 35.71 3.16
1763 1973 6.693315 ATACCATTAAAACGAAGACCATGG 57.307 37.500 11.19 11.19 36.54 3.66
1819 2035 6.192234 AGACTAAGTCAATCGTTCGTATGT 57.808 37.500 0.00 0.00 34.60 2.29
1849 2065 6.968131 TTATGAGAGGAAATTCAAGACACG 57.032 37.500 0.00 0.00 0.00 4.49
1940 2306 3.790437 CTCCGCCACTGCTCCCAT 61.790 66.667 0.00 0.00 34.43 4.00
1947 2313 0.392998 AAATGCTACCTCCGCCACTG 60.393 55.000 0.00 0.00 0.00 3.66
1948 2314 0.392998 CAAATGCTACCTCCGCCACT 60.393 55.000 0.00 0.00 0.00 4.00
1949 2315 0.392461 TCAAATGCTACCTCCGCCAC 60.392 55.000 0.00 0.00 0.00 5.01
1950 2316 0.392461 GTCAAATGCTACCTCCGCCA 60.392 55.000 0.00 0.00 0.00 5.69
1951 2317 1.429148 CGTCAAATGCTACCTCCGCC 61.429 60.000 0.00 0.00 0.00 6.13
1952 2318 0.459585 TCGTCAAATGCTACCTCCGC 60.460 55.000 0.00 0.00 0.00 5.54
1953 2319 1.278238 GTCGTCAAATGCTACCTCCG 58.722 55.000 0.00 0.00 0.00 4.63
1954 2320 2.271800 CTGTCGTCAAATGCTACCTCC 58.728 52.381 0.00 0.00 0.00 4.30
1955 2321 2.271800 CCTGTCGTCAAATGCTACCTC 58.728 52.381 0.00 0.00 0.00 3.85
1956 2322 1.066143 CCCTGTCGTCAAATGCTACCT 60.066 52.381 0.00 0.00 0.00 3.08
1957 2323 1.338769 ACCCTGTCGTCAAATGCTACC 60.339 52.381 0.00 0.00 0.00 3.18
1958 2324 1.732259 CACCCTGTCGTCAAATGCTAC 59.268 52.381 0.00 0.00 0.00 3.58
1959 2325 1.338674 CCACCCTGTCGTCAAATGCTA 60.339 52.381 0.00 0.00 0.00 3.49
1960 2326 0.606401 CCACCCTGTCGTCAAATGCT 60.606 55.000 0.00 0.00 0.00 3.79
1961 2327 0.889186 ACCACCCTGTCGTCAAATGC 60.889 55.000 0.00 0.00 0.00 3.56
1962 2328 1.156736 GACCACCCTGTCGTCAAATG 58.843 55.000 0.00 0.00 0.00 2.32
1963 2329 0.036306 GGACCACCCTGTCGTCAAAT 59.964 55.000 0.00 0.00 36.07 2.32
1964 2330 1.338890 TGGACCACCCTGTCGTCAAA 61.339 55.000 0.00 0.00 36.07 2.69
1965 2331 1.125093 ATGGACCACCCTGTCGTCAA 61.125 55.000 0.00 0.00 36.07 3.18
1966 2332 1.535444 ATGGACCACCCTGTCGTCA 60.535 57.895 0.00 0.00 36.07 4.35
1967 2333 1.218316 GATGGACCACCCTGTCGTC 59.782 63.158 0.00 0.00 36.07 4.20
1968 2334 2.291043 GGATGGACCACCCTGTCGT 61.291 63.158 0.00 0.00 38.79 4.34
1969 2335 2.584608 GGATGGACCACCCTGTCG 59.415 66.667 0.00 0.00 38.79 4.35
1970 2336 2.680370 GGGGATGGACCACCCTGTC 61.680 68.421 23.51 7.59 44.97 3.51
1971 2337 2.614013 GGGGATGGACCACCCTGT 60.614 66.667 23.51 0.00 44.97 4.00
1972 2338 1.799157 TTTGGGGATGGACCACCCTG 61.799 60.000 23.51 0.00 44.97 4.45
1973 2339 1.077298 TTTTGGGGATGGACCACCCT 61.077 55.000 23.51 0.00 44.97 4.34
1974 2340 0.178918 TTTTTGGGGATGGACCACCC 60.179 55.000 18.91 18.91 42.44 4.61
1975 2341 3.466714 TTTTTGGGGATGGACCACC 57.533 52.632 0.00 0.00 42.44 4.61
2000 2366 9.743581 TGGAATATCACATGTCATATTGCTTAT 57.256 29.630 26.18 2.93 35.44 1.73
2001 2367 9.571816 TTGGAATATCACATGTCATATTGCTTA 57.428 29.630 26.18 15.89 35.44 3.09
2002 2368 8.355169 GTTGGAATATCACATGTCATATTGCTT 58.645 33.333 26.18 4.63 35.44 3.91
2003 2369 7.722728 AGTTGGAATATCACATGTCATATTGCT 59.277 33.333 26.18 13.86 35.44 3.91
2004 2370 7.879070 AGTTGGAATATCACATGTCATATTGC 58.121 34.615 21.73 21.73 35.15 3.56
2006 2372 9.507329 GGTAGTTGGAATATCACATGTCATATT 57.493 33.333 14.08 14.08 0.00 1.28
2007 2373 8.103305 GGGTAGTTGGAATATCACATGTCATAT 58.897 37.037 0.00 0.00 0.00 1.78
2008 2374 7.450074 GGGTAGTTGGAATATCACATGTCATA 58.550 38.462 0.00 0.00 0.00 2.15
2009 2375 6.299141 GGGTAGTTGGAATATCACATGTCAT 58.701 40.000 0.00 0.00 0.00 3.06
2010 2376 5.397447 GGGGTAGTTGGAATATCACATGTCA 60.397 44.000 0.00 0.00 0.00 3.58
2011 2377 5.063880 GGGGTAGTTGGAATATCACATGTC 58.936 45.833 0.00 0.00 0.00 3.06
2012 2378 4.726825 AGGGGTAGTTGGAATATCACATGT 59.273 41.667 0.00 0.00 0.00 3.21
2013 2379 5.310409 AGGGGTAGTTGGAATATCACATG 57.690 43.478 0.00 0.00 0.00 3.21
2014 2380 5.431731 TGAAGGGGTAGTTGGAATATCACAT 59.568 40.000 0.00 0.00 0.00 3.21
2015 2381 4.785914 TGAAGGGGTAGTTGGAATATCACA 59.214 41.667 0.00 0.00 0.00 3.58
2016 2382 5.367945 TGAAGGGGTAGTTGGAATATCAC 57.632 43.478 0.00 0.00 0.00 3.06
2017 2383 7.699709 TTATGAAGGGGTAGTTGGAATATCA 57.300 36.000 0.00 0.00 0.00 2.15
2018 2384 8.990163 TTTTATGAAGGGGTAGTTGGAATATC 57.010 34.615 0.00 0.00 0.00 1.63
2019 2385 8.004801 CCTTTTATGAAGGGGTAGTTGGAATAT 58.995 37.037 2.56 0.00 33.79 1.28
2020 2386 7.184936 TCCTTTTATGAAGGGGTAGTTGGAATA 59.815 37.037 9.15 0.00 37.99 1.75
2021 2387 6.011096 TCCTTTTATGAAGGGGTAGTTGGAAT 60.011 38.462 9.15 0.00 37.99 3.01
2022 2388 5.313772 TCCTTTTATGAAGGGGTAGTTGGAA 59.686 40.000 9.15 0.00 37.99 3.53
2023 2389 4.853276 TCCTTTTATGAAGGGGTAGTTGGA 59.147 41.667 9.15 0.00 37.99 3.53
2024 2390 5.187621 TCCTTTTATGAAGGGGTAGTTGG 57.812 43.478 9.15 0.00 37.99 3.77
2025 2391 7.718334 ATTTCCTTTTATGAAGGGGTAGTTG 57.282 36.000 9.15 0.00 37.99 3.16
2030 2396 9.868160 CTCTTATATTTCCTTTTATGAAGGGGT 57.132 33.333 9.15 1.03 37.99 4.95
2031 2397 9.868160 ACTCTTATATTTCCTTTTATGAAGGGG 57.132 33.333 9.15 0.00 37.99 4.79
2051 2417 8.289618 GCACATGAAAACATCTAAACACTCTTA 58.710 33.333 0.00 0.00 0.00 2.10
2052 2418 7.141363 GCACATGAAAACATCTAAACACTCTT 58.859 34.615 0.00 0.00 0.00 2.85
2053 2419 6.262944 TGCACATGAAAACATCTAAACACTCT 59.737 34.615 0.00 0.00 0.00 3.24
2054 2420 6.437928 TGCACATGAAAACATCTAAACACTC 58.562 36.000 0.00 0.00 0.00 3.51
2055 2421 6.262944 TCTGCACATGAAAACATCTAAACACT 59.737 34.615 0.00 0.00 0.00 3.55
2056 2422 6.437928 TCTGCACATGAAAACATCTAAACAC 58.562 36.000 0.00 0.00 0.00 3.32
2057 2423 6.631971 TCTGCACATGAAAACATCTAAACA 57.368 33.333 0.00 0.00 0.00 2.83
2058 2424 7.362662 TCTTCTGCACATGAAAACATCTAAAC 58.637 34.615 0.00 0.00 0.00 2.01
2059 2425 7.509141 TCTTCTGCACATGAAAACATCTAAA 57.491 32.000 0.00 0.00 0.00 1.85
2060 2426 7.692460 ATCTTCTGCACATGAAAACATCTAA 57.308 32.000 0.00 0.00 0.00 2.10
2061 2427 7.362315 CCAATCTTCTGCACATGAAAACATCTA 60.362 37.037 0.00 0.00 0.00 1.98
2062 2428 6.387465 CAATCTTCTGCACATGAAAACATCT 58.613 36.000 0.00 0.00 0.00 2.90
2063 2429 5.575606 CCAATCTTCTGCACATGAAAACATC 59.424 40.000 0.00 0.00 0.00 3.06
2064 2430 5.244402 TCCAATCTTCTGCACATGAAAACAT 59.756 36.000 0.00 0.00 0.00 2.71
2065 2431 4.583907 TCCAATCTTCTGCACATGAAAACA 59.416 37.500 0.00 0.00 0.00 2.83
2066 2432 5.125100 TCCAATCTTCTGCACATGAAAAC 57.875 39.130 0.00 0.00 0.00 2.43
2067 2433 4.828939 ACTCCAATCTTCTGCACATGAAAA 59.171 37.500 0.00 0.00 0.00 2.29
2068 2434 4.401022 ACTCCAATCTTCTGCACATGAAA 58.599 39.130 0.00 0.00 0.00 2.69
2069 2435 4.025040 ACTCCAATCTTCTGCACATGAA 57.975 40.909 0.00 0.00 0.00 2.57
2070 2436 3.708403 ACTCCAATCTTCTGCACATGA 57.292 42.857 0.00 0.00 0.00 3.07
2071 2437 4.256110 TGTACTCCAATCTTCTGCACATG 58.744 43.478 0.00 0.00 0.00 3.21
2072 2438 4.558226 TGTACTCCAATCTTCTGCACAT 57.442 40.909 0.00 0.00 0.00 3.21
2073 2439 4.350368 TTGTACTCCAATCTTCTGCACA 57.650 40.909 0.00 0.00 0.00 4.57
2074 2440 5.689383 TTTTGTACTCCAATCTTCTGCAC 57.311 39.130 0.00 0.00 31.81 4.57
2075 2441 4.216257 GCTTTTGTACTCCAATCTTCTGCA 59.784 41.667 0.00 0.00 31.81 4.41
2076 2442 4.457257 AGCTTTTGTACTCCAATCTTCTGC 59.543 41.667 0.00 0.00 31.81 4.26
2077 2443 6.175712 GAGCTTTTGTACTCCAATCTTCTG 57.824 41.667 0.00 0.00 31.81 3.02
2087 2453 2.467962 GCCCGGAGCTTTTGTACTC 58.532 57.895 0.73 0.00 38.99 2.59
2088 2454 4.716003 GCCCGGAGCTTTTGTACT 57.284 55.556 0.73 0.00 38.99 2.73
2118 2484 3.467119 CCGTTTGTCGCGTCCTCG 61.467 66.667 5.77 6.26 38.35 4.63
2119 2485 3.774702 GCCGTTTGTCGCGTCCTC 61.775 66.667 5.77 0.00 38.35 3.71
2122 2488 4.117372 CTCGCCGTTTGTCGCGTC 62.117 66.667 5.77 0.00 38.99 5.19
2151 2517 4.338710 TTTCCCTTGCCCGACCCG 62.339 66.667 0.00 0.00 0.00 5.28
2152 2518 2.675423 GTTTCCCTTGCCCGACCC 60.675 66.667 0.00 0.00 0.00 4.46
2153 2519 1.971695 CAGTTTCCCTTGCCCGACC 60.972 63.158 0.00 0.00 0.00 4.79
2154 2520 1.072505 TCAGTTTCCCTTGCCCGAC 59.927 57.895 0.00 0.00 0.00 4.79
2155 2521 1.072505 GTCAGTTTCCCTTGCCCGA 59.927 57.895 0.00 0.00 0.00 5.14
2156 2522 2.325082 CGTCAGTTTCCCTTGCCCG 61.325 63.158 0.00 0.00 0.00 6.13
2157 2523 1.971695 CCGTCAGTTTCCCTTGCCC 60.972 63.158 0.00 0.00 0.00 5.36
2158 2524 2.626780 GCCGTCAGTTTCCCTTGCC 61.627 63.158 0.00 0.00 0.00 4.52
2159 2525 2.954611 GCCGTCAGTTTCCCTTGC 59.045 61.111 0.00 0.00 0.00 4.01
2160 2526 1.291877 CTCGCCGTCAGTTTCCCTTG 61.292 60.000 0.00 0.00 0.00 3.61
2161 2527 1.004918 CTCGCCGTCAGTTTCCCTT 60.005 57.895 0.00 0.00 0.00 3.95
2162 2528 2.657237 CTCGCCGTCAGTTTCCCT 59.343 61.111 0.00 0.00 0.00 4.20
2163 2529 2.434359 CCTCGCCGTCAGTTTCCC 60.434 66.667 0.00 0.00 0.00 3.97
2164 2530 3.119096 GCCTCGCCGTCAGTTTCC 61.119 66.667 0.00 0.00 0.00 3.13
2165 2531 1.959226 TTGCCTCGCCGTCAGTTTC 60.959 57.895 0.00 0.00 0.00 2.78
2166 2532 2.110213 TTGCCTCGCCGTCAGTTT 59.890 55.556 0.00 0.00 0.00 2.66
2167 2533 2.665185 GTTGCCTCGCCGTCAGTT 60.665 61.111 0.00 0.00 0.00 3.16
2168 2534 4.681978 GGTTGCCTCGCCGTCAGT 62.682 66.667 0.00 0.00 0.00 3.41
2174 2540 4.373116 TCTCACGGTTGCCTCGCC 62.373 66.667 0.00 0.00 0.00 5.54
2175 2541 2.811317 CTCTCACGGTTGCCTCGC 60.811 66.667 0.00 0.00 0.00 5.03
2176 2542 2.125912 CCTCTCACGGTTGCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
2177 2543 1.216710 CTCCTCTCACGGTTGCCTC 59.783 63.158 0.00 0.00 0.00 4.70
2178 2544 2.286523 CCTCCTCTCACGGTTGCCT 61.287 63.158 0.00 0.00 0.00 4.75
2179 2545 1.617947 ATCCTCCTCTCACGGTTGCC 61.618 60.000 0.00 0.00 0.00 4.52
2180 2546 0.250513 AATCCTCCTCTCACGGTTGC 59.749 55.000 0.00 0.00 0.00 4.17
2181 2547 1.276421 ACAATCCTCCTCTCACGGTTG 59.724 52.381 0.00 0.00 0.00 3.77
2182 2548 1.645710 ACAATCCTCCTCTCACGGTT 58.354 50.000 0.00 0.00 0.00 4.44
2183 2549 1.550976 GAACAATCCTCCTCTCACGGT 59.449 52.381 0.00 0.00 0.00 4.83
2184 2550 1.827969 AGAACAATCCTCCTCTCACGG 59.172 52.381 0.00 0.00 0.00 4.94
2185 2551 2.886081 CAGAACAATCCTCCTCTCACG 58.114 52.381 0.00 0.00 0.00 4.35
2186 2552 2.235898 AGCAGAACAATCCTCCTCTCAC 59.764 50.000 0.00 0.00 0.00 3.51
2187 2553 2.499289 GAGCAGAACAATCCTCCTCTCA 59.501 50.000 0.00 0.00 0.00 3.27
2188 2554 2.481104 CGAGCAGAACAATCCTCCTCTC 60.481 54.545 0.00 0.00 0.00 3.20
2189 2555 1.480137 CGAGCAGAACAATCCTCCTCT 59.520 52.381 0.00 0.00 0.00 3.69
2190 2556 1.478510 TCGAGCAGAACAATCCTCCTC 59.521 52.381 0.00 0.00 0.00 3.71
2191 2557 1.561643 TCGAGCAGAACAATCCTCCT 58.438 50.000 0.00 0.00 0.00 3.69
2192 2558 2.159043 TCATCGAGCAGAACAATCCTCC 60.159 50.000 0.00 0.00 0.00 4.30
2193 2559 2.863137 GTCATCGAGCAGAACAATCCTC 59.137 50.000 0.00 0.00 0.00 3.71
2194 2560 2.419297 GGTCATCGAGCAGAACAATCCT 60.419 50.000 0.00 0.00 0.00 3.24
2195 2561 1.936547 GGTCATCGAGCAGAACAATCC 59.063 52.381 0.00 0.00 0.00 3.01
2196 2562 1.590238 CGGTCATCGAGCAGAACAATC 59.410 52.381 0.00 0.00 42.43 2.67
2197 2563 1.066858 ACGGTCATCGAGCAGAACAAT 60.067 47.619 0.00 0.00 42.43 2.71
2198 2564 0.317160 ACGGTCATCGAGCAGAACAA 59.683 50.000 0.00 0.00 42.43 2.83
2199 2565 0.388520 CACGGTCATCGAGCAGAACA 60.389 55.000 0.00 0.00 42.43 3.18
2200 2566 1.078759 CCACGGTCATCGAGCAGAAC 61.079 60.000 0.00 0.00 42.43 3.01
2201 2567 1.215382 CCACGGTCATCGAGCAGAA 59.785 57.895 0.00 0.00 42.43 3.02
2202 2568 1.037579 ATCCACGGTCATCGAGCAGA 61.038 55.000 0.00 0.00 42.43 4.26
2203 2569 0.873312 CATCCACGGTCATCGAGCAG 60.873 60.000 0.00 0.00 42.43 4.24
2204 2570 1.141665 CATCCACGGTCATCGAGCA 59.858 57.895 0.00 0.00 42.43 4.26
2205 2571 1.141881 ACATCCACGGTCATCGAGC 59.858 57.895 0.00 0.00 42.43 5.03
2206 2572 1.148157 GCACATCCACGGTCATCGAG 61.148 60.000 0.00 0.00 42.43 4.04
2207 2573 1.153647 GCACATCCACGGTCATCGA 60.154 57.895 0.00 0.00 42.43 3.59
2208 2574 1.153568 AGCACATCCACGGTCATCG 60.154 57.895 0.00 0.00 45.88 3.84
2209 2575 1.709147 GCAGCACATCCACGGTCATC 61.709 60.000 0.00 0.00 0.00 2.92
2210 2576 1.746615 GCAGCACATCCACGGTCAT 60.747 57.895 0.00 0.00 0.00 3.06
2211 2577 2.358615 GCAGCACATCCACGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
2212 2578 2.046892 AGCAGCACATCCACGGTC 60.047 61.111 0.00 0.00 0.00 4.79
2213 2579 2.046892 GAGCAGCACATCCACGGT 60.047 61.111 0.00 0.00 0.00 4.83
2214 2580 2.821366 GGAGCAGCACATCCACGG 60.821 66.667 0.00 0.00 35.54 4.94
2215 2581 2.821366 GGGAGCAGCACATCCACG 60.821 66.667 0.00 0.00 37.33 4.94
2216 2582 1.748122 CAGGGAGCAGCACATCCAC 60.748 63.158 0.00 0.00 37.33 4.02
2217 2583 2.672908 CAGGGAGCAGCACATCCA 59.327 61.111 0.00 0.00 37.33 3.41
2218 2584 1.992519 ATCCAGGGAGCAGCACATCC 61.993 60.000 0.00 0.00 34.64 3.51
2219 2585 0.106819 AATCCAGGGAGCAGCACATC 60.107 55.000 0.00 0.00 0.00 3.06
2220 2586 0.395311 CAATCCAGGGAGCAGCACAT 60.395 55.000 0.00 0.00 0.00 3.21
2221 2587 1.001764 CAATCCAGGGAGCAGCACA 60.002 57.895 0.00 0.00 0.00 4.57
2222 2588 2.413142 GCAATCCAGGGAGCAGCAC 61.413 63.158 0.00 0.00 0.00 4.40
2223 2589 2.044650 GCAATCCAGGGAGCAGCA 60.045 61.111 0.00 0.00 0.00 4.41
2224 2590 3.207669 CGCAATCCAGGGAGCAGC 61.208 66.667 0.00 0.00 0.00 5.25
2225 2591 0.107703 TAACGCAATCCAGGGAGCAG 60.108 55.000 0.00 0.00 0.00 4.24
2226 2592 0.546122 ATAACGCAATCCAGGGAGCA 59.454 50.000 0.00 0.00 0.00 4.26
2227 2593 1.334869 CAATAACGCAATCCAGGGAGC 59.665 52.381 0.00 0.00 0.00 4.70
2228 2594 1.949525 CCAATAACGCAATCCAGGGAG 59.050 52.381 0.00 0.00 0.00 4.30
2229 2595 1.562008 TCCAATAACGCAATCCAGGGA 59.438 47.619 0.00 0.00 0.00 4.20
2230 2596 1.676006 GTCCAATAACGCAATCCAGGG 59.324 52.381 0.00 0.00 0.00 4.45
2231 2597 1.676006 GGTCCAATAACGCAATCCAGG 59.324 52.381 0.00 0.00 0.00 4.45
2232 2598 1.330521 CGGTCCAATAACGCAATCCAG 59.669 52.381 0.00 0.00 0.00 3.86
2233 2599 1.339247 ACGGTCCAATAACGCAATCCA 60.339 47.619 0.00 0.00 0.00 3.41
2234 2600 1.375551 ACGGTCCAATAACGCAATCC 58.624 50.000 0.00 0.00 0.00 3.01
2235 2601 3.481112 AAACGGTCCAATAACGCAATC 57.519 42.857 0.00 0.00 0.00 2.67
2236 2602 3.926821 AAAACGGTCCAATAACGCAAT 57.073 38.095 0.00 0.00 0.00 3.56
2237 2603 3.712091 AAAAACGGTCCAATAACGCAA 57.288 38.095 0.00 0.00 0.00 4.85
2254 2620 7.819900 GTCTCTAACTGAGCCAGAGAATAAAAA 59.180 37.037 13.31 0.00 44.72 1.94
2255 2621 7.039011 TGTCTCTAACTGAGCCAGAGAATAAAA 60.039 37.037 13.31 0.00 44.72 1.52
2256 2622 6.437477 TGTCTCTAACTGAGCCAGAGAATAAA 59.563 38.462 13.31 1.06 44.72 1.40
2257 2623 5.952347 TGTCTCTAACTGAGCCAGAGAATAA 59.048 40.000 13.31 2.98 44.72 1.40
2258 2624 5.510430 TGTCTCTAACTGAGCCAGAGAATA 58.490 41.667 13.31 5.52 44.72 1.75
2259 2625 4.348486 TGTCTCTAACTGAGCCAGAGAAT 58.652 43.478 13.31 0.00 44.72 2.40
2260 2626 3.767711 TGTCTCTAACTGAGCCAGAGAA 58.232 45.455 13.31 4.37 44.72 2.87
2261 2627 3.441500 TGTCTCTAACTGAGCCAGAGA 57.558 47.619 8.95 8.95 41.87 3.10
2262 2628 4.278170 CCTATGTCTCTAACTGAGCCAGAG 59.722 50.000 8.91 4.92 39.05 3.35
2263 2629 4.211125 CCTATGTCTCTAACTGAGCCAGA 58.789 47.826 8.91 0.00 42.38 3.86
2264 2630 3.957497 ACCTATGTCTCTAACTGAGCCAG 59.043 47.826 1.16 1.16 42.38 4.85
2265 2631 3.982516 ACCTATGTCTCTAACTGAGCCA 58.017 45.455 0.00 0.00 42.38 4.75
2266 2632 7.948034 ATATACCTATGTCTCTAACTGAGCC 57.052 40.000 0.00 0.00 42.38 4.70
2274 2640 9.854668 GGATCTGCTTATATACCTATGTCTCTA 57.145 37.037 0.00 0.00 0.00 2.43
2275 2641 8.340002 TGGATCTGCTTATATACCTATGTCTCT 58.660 37.037 0.00 0.00 0.00 3.10
2276 2642 8.526667 TGGATCTGCTTATATACCTATGTCTC 57.473 38.462 0.00 0.00 0.00 3.36
2277 2643 8.901472 TTGGATCTGCTTATATACCTATGTCT 57.099 34.615 0.00 0.00 0.00 3.41
2278 2644 9.944376 TTTTGGATCTGCTTATATACCTATGTC 57.056 33.333 0.00 0.00 0.00 3.06
2282 2648 8.258007 CGGATTTTGGATCTGCTTATATACCTA 58.742 37.037 0.00 0.00 0.00 3.08
2283 2649 7.106239 CGGATTTTGGATCTGCTTATATACCT 58.894 38.462 0.00 0.00 0.00 3.08
2284 2650 6.183360 GCGGATTTTGGATCTGCTTATATACC 60.183 42.308 11.52 0.00 44.68 2.73
2285 2651 6.183360 GGCGGATTTTGGATCTGCTTATATAC 60.183 42.308 16.69 0.00 46.64 1.47
2286 2652 5.880332 GGCGGATTTTGGATCTGCTTATATA 59.120 40.000 16.69 0.00 46.64 0.86
2287 2653 4.702131 GGCGGATTTTGGATCTGCTTATAT 59.298 41.667 16.69 0.00 46.64 0.86
2288 2654 4.072131 GGCGGATTTTGGATCTGCTTATA 58.928 43.478 16.69 0.00 46.64 0.98
2289 2655 2.887152 GGCGGATTTTGGATCTGCTTAT 59.113 45.455 16.69 0.00 46.64 1.73
2290 2656 2.297701 GGCGGATTTTGGATCTGCTTA 58.702 47.619 16.69 0.00 46.64 3.09
2291 2657 1.106285 GGCGGATTTTGGATCTGCTT 58.894 50.000 16.69 0.00 46.64 3.91
2292 2658 0.753111 GGGCGGATTTTGGATCTGCT 60.753 55.000 16.69 0.00 46.64 4.24
2293 2659 0.753111 AGGGCGGATTTTGGATCTGC 60.753 55.000 10.57 10.57 46.71 4.26
2294 2660 2.498167 CTAGGGCGGATTTTGGATCTG 58.502 52.381 0.00 0.00 0.00 2.90
2295 2661 1.202818 GCTAGGGCGGATTTTGGATCT 60.203 52.381 0.00 0.00 0.00 2.75
2296 2662 1.239347 GCTAGGGCGGATTTTGGATC 58.761 55.000 0.00 0.00 0.00 3.36
2297 2663 0.178990 GGCTAGGGCGGATTTTGGAT 60.179 55.000 0.00 0.00 39.81 3.41
2298 2664 1.226262 GGCTAGGGCGGATTTTGGA 59.774 57.895 0.00 0.00 39.81 3.53
2299 2665 1.077068 TGGCTAGGGCGGATTTTGG 60.077 57.895 0.00 0.00 39.81 3.28
2300 2666 1.384222 GGTGGCTAGGGCGGATTTTG 61.384 60.000 0.00 0.00 39.81 2.44
2301 2667 1.076995 GGTGGCTAGGGCGGATTTT 60.077 57.895 0.00 0.00 39.81 1.82
2302 2668 2.595655 GGTGGCTAGGGCGGATTT 59.404 61.111 0.00 0.00 39.81 2.17
2303 2669 3.489513 GGGTGGCTAGGGCGGATT 61.490 66.667 0.00 0.00 39.81 3.01
2304 2670 4.499116 AGGGTGGCTAGGGCGGAT 62.499 66.667 0.00 0.00 39.81 4.18
2307 2673 2.762459 TACAGGGTGGCTAGGGCG 60.762 66.667 0.00 0.00 39.81 6.13
2308 2674 0.764752 ATCTACAGGGTGGCTAGGGC 60.765 60.000 0.00 0.00 37.82 5.19
2309 2675 1.343069 GATCTACAGGGTGGCTAGGG 58.657 60.000 0.00 0.00 0.00 3.53
2310 2676 1.343069 GGATCTACAGGGTGGCTAGG 58.657 60.000 0.00 0.00 0.00 3.02
2311 2677 0.962489 CGGATCTACAGGGTGGCTAG 59.038 60.000 0.00 0.00 0.00 3.42
2312 2678 1.113517 GCGGATCTACAGGGTGGCTA 61.114 60.000 0.00 0.00 0.00 3.93
2313 2679 2.435693 GCGGATCTACAGGGTGGCT 61.436 63.158 0.00 0.00 0.00 4.75
2314 2680 2.109181 GCGGATCTACAGGGTGGC 59.891 66.667 0.00 0.00 0.00 5.01
2315 2681 2.063979 TGGCGGATCTACAGGGTGG 61.064 63.158 0.00 0.00 0.00 4.61
2316 2682 1.144057 GTGGCGGATCTACAGGGTG 59.856 63.158 0.00 0.00 0.00 4.61
2317 2683 1.001760 AGTGGCGGATCTACAGGGT 59.998 57.895 0.00 0.00 0.00 4.34
2318 2684 1.443407 CAGTGGCGGATCTACAGGG 59.557 63.158 0.00 0.00 0.00 4.45
2319 2685 1.227380 GCAGTGGCGGATCTACAGG 60.227 63.158 0.00 0.00 0.00 4.00
2320 2686 4.427394 GCAGTGGCGGATCTACAG 57.573 61.111 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.