Multiple sequence alignment - TraesCS1D01G311500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G311500 chr1D 100.000 6449 0 0 1 6449 407675486 407669038 0.000000e+00 11910.0
1 TraesCS1D01G311500 chr1D 87.675 2718 266 39 2928 5606 6714624 6711937 0.000000e+00 3099.0
2 TraesCS1D01G311500 chr1D 84.993 2712 321 53 2944 5606 6913162 6915836 0.000000e+00 2675.0
3 TraesCS1D01G311500 chr1D 80.594 438 41 25 1098 1528 6901227 6901627 1.360000e-76 298.0
4 TraesCS1D01G311500 chr1D 82.632 190 13 8 5972 6161 6694718 6694549 4.030000e-32 150.0
5 TraesCS1D01G311500 chr1D 91.667 60 5 0 768 827 6897465 6897524 4.140000e-12 84.2
6 TraesCS1D01G311500 chr1B 96.579 3888 85 12 2562 6449 548194050 548190211 0.000000e+00 6399.0
7 TraesCS1D01G311500 chr1B 85.811 2657 290 57 2969 5599 8855853 8853258 0.000000e+00 2737.0
8 TraesCS1D01G311500 chr1B 96.406 1614 39 3 958 2569 548195898 548194302 0.000000e+00 2641.0
9 TraesCS1D01G311500 chr1B 84.078 2776 352 54 2876 5604 10007551 10004819 0.000000e+00 2595.0
10 TraesCS1D01G311500 chr1B 84.329 2712 336 53 2944 5606 8819922 8817251 0.000000e+00 2571.0
11 TraesCS1D01G311500 chr1B 84.137 2591 336 34 2928 5479 548199906 548197352 0.000000e+00 2438.0
12 TraesCS1D01G311500 chr1B 81.744 2213 317 38 2928 5112 9175366 9177519 0.000000e+00 1768.0
13 TraesCS1D01G311500 chr1B 94.249 626 23 5 335 959 548201291 548200678 0.000000e+00 944.0
14 TraesCS1D01G311500 chr1B 87.054 224 16 6 126 347 548201550 548201338 2.320000e-59 241.0
15 TraesCS1D01G311500 chr1B 80.543 221 22 10 5703 5918 8853231 8853027 4.030000e-32 150.0
16 TraesCS1D01G311500 chr1B 88.889 108 9 3 5606 5711 480369659 480369765 5.250000e-26 130.0
17 TraesCS1D01G311500 chr1A 92.726 2942 179 13 2662 5599 7834427 7837337 0.000000e+00 4215.0
18 TraesCS1D01G311500 chr1A 87.417 2710 273 37 2928 5599 8144516 8141837 0.000000e+00 3053.0
19 TraesCS1D01G311500 chr1A 84.227 2593 336 33 2925 5480 8327128 8329684 0.000000e+00 2455.0
20 TraesCS1D01G311500 chr1A 83.177 1914 257 36 2886 4766 9375704 9373823 0.000000e+00 1690.0
21 TraesCS1D01G311500 chr1A 85.991 671 35 20 1570 2236 8339057 8339672 0.000000e+00 664.0
22 TraesCS1D01G311500 chr1A 94.521 219 11 1 2128 2346 7834083 7834300 2.880000e-88 337.0
23 TraesCS1D01G311500 chr1A 81.366 322 28 12 5724 6042 8141786 8141494 3.890000e-57 233.0
24 TraesCS1D01G311500 chr1A 93.651 126 7 1 2246 2371 8339652 8339776 3.070000e-43 187.0
25 TraesCS1D01G311500 chr1A 96.117 103 3 1 2502 2603 8339811 8339913 4.000000e-37 167.0
26 TraesCS1D01G311500 chr5A 89.776 2768 254 15 2851 5606 12194308 12191558 0.000000e+00 3517.0
27 TraesCS1D01G311500 chr5A 82.020 406 37 14 1824 2219 12195780 12195401 4.850000e-81 313.0
28 TraesCS1D01G311500 chr5A 78.138 494 56 24 5710 6156 12191522 12191034 3.830000e-67 267.0
29 TraesCS1D01G311500 chr5B 89.346 2769 264 21 2851 5606 13776225 13773475 0.000000e+00 3450.0
30 TraesCS1D01G311500 chr5B 80.843 2516 413 40 2933 5413 546145914 546143433 0.000000e+00 1912.0
31 TraesCS1D01G311500 chr5B 82.601 569 56 22 1209 1773 549553248 549553777 4.560000e-126 462.0
32 TraesCS1D01G311500 chr5B 83.982 437 32 13 547 956 549546228 549546653 1.010000e-102 385.0
33 TraesCS1D01G311500 chr5B 80.811 370 50 10 5710 6060 13773439 13773072 2.960000e-68 270.0
34 TraesCS1D01G311500 chr5B 94.326 141 7 1 1 141 620569716 620569577 1.410000e-51 215.0
35 TraesCS1D01G311500 chr5B 82.129 263 18 13 1969 2219 13777083 13776838 1.420000e-46 198.0
36 TraesCS1D01G311500 chr5B 86.726 113 12 3 1102 1211 549553055 549553167 8.780000e-24 122.0
37 TraesCS1D01G311500 chr5B 87.379 103 4 4 418 519 549546135 549546229 6.840000e-20 110.0
38 TraesCS1D01G311500 chr5B 97.297 37 1 0 863 899 549547000 549547036 5.400000e-06 63.9
39 TraesCS1D01G311500 chr4B 86.785 2709 271 43 2931 5599 36635862 36633201 0.000000e+00 2939.0
40 TraesCS1D01G311500 chr4B 78.636 220 27 8 5703 5918 36633174 36632971 1.890000e-25 128.0
41 TraesCS1D01G311500 chr5D 79.948 1157 126 53 1103 2219 18081932 18083022 0.000000e+00 754.0
42 TraesCS1D01G311500 chr5D 79.048 420 49 15 5710 6106 18086468 18086871 1.070000e-62 252.0
43 TraesCS1D01G311500 chr5D 78.261 276 29 13 2505 2779 18083300 18083545 1.450000e-31 148.0
44 TraesCS1D01G311500 chr5D 94.792 96 4 1 5612 5706 431293732 431293827 1.450000e-31 148.0
45 TraesCS1D01G311500 chr7D 96.212 132 3 2 1 131 605469404 605469274 1.410000e-51 215.0
46 TraesCS1D01G311500 chr7D 94.393 107 6 0 2371 2477 310990196 310990302 1.440000e-36 165.0
47 TraesCS1D01G311500 chr7D 93.519 108 7 0 2369 2476 414373150 414373043 1.860000e-35 161.0
48 TraesCS1D01G311500 chr7D 94.624 93 5 0 5618 5710 64381210 64381302 1.870000e-30 145.0
49 TraesCS1D01G311500 chr7D 89.091 110 10 2 5617 5725 49381897 49382005 1.130000e-27 135.0
50 TraesCS1D01G311500 chr2D 96.899 129 3 1 1 129 145819535 145819662 1.410000e-51 215.0
51 TraesCS1D01G311500 chr2D 92.908 141 10 0 1 141 190985837 190985697 8.480000e-49 206.0
52 TraesCS1D01G311500 chr2D 92.958 142 8 2 1 141 625108966 625109106 8.480000e-49 206.0
53 TraesCS1D01G311500 chr2D 90.756 119 10 1 2367 2485 351973347 351973464 2.410000e-34 158.0
54 TraesCS1D01G311500 chr3D 93.617 141 5 4 1 139 285379738 285379876 2.360000e-49 207.0
55 TraesCS1D01G311500 chr3D 93.636 110 6 1 2367 2476 578617871 578617979 5.170000e-36 163.0
56 TraesCS1D01G311500 chr3D 92.727 110 8 0 2370 2479 536330683 536330574 6.690000e-35 159.0
57 TraesCS1D01G311500 chr3D 93.617 94 6 0 5617 5710 338881558 338881651 2.420000e-29 141.0
58 TraesCS1D01G311500 chr3D 91.089 101 7 2 5605 5704 312907494 312907593 1.130000e-27 135.0
59 TraesCS1D01G311500 chr3D 91.837 98 6 2 5616 5713 562693532 562693627 1.130000e-27 135.0
60 TraesCS1D01G311500 chr3B 93.007 143 9 1 1 143 325468512 325468653 2.360000e-49 207.0
61 TraesCS1D01G311500 chr6B 93.571 140 5 3 1 140 669509309 669509174 8.480000e-49 206.0
62 TraesCS1D01G311500 chr2A 90.968 155 11 3 1 153 193808297 193808450 8.480000e-49 206.0
63 TraesCS1D01G311500 chr7B 96.296 108 4 0 2370 2477 357651484 357651591 1.850000e-40 178.0
64 TraesCS1D01G311500 chr7B 95.238 105 5 0 2372 2476 491169142 491169038 4.000000e-37 167.0
65 TraesCS1D01G311500 chr4A 92.793 111 8 0 2366 2476 313632424 313632314 1.860000e-35 161.0
66 TraesCS1D01G311500 chr4A 95.556 90 4 0 5616 5705 69329941 69329852 1.870000e-30 145.0
67 TraesCS1D01G311500 chr6D 87.970 133 14 2 2352 2484 22075342 22075212 8.660000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G311500 chr1D 407669038 407675486 6448 True 11910.000000 11910 100.000000 1 6449 1 chr1D.!!$R3 6448
1 TraesCS1D01G311500 chr1D 6711937 6714624 2687 True 3099.000000 3099 87.675000 2928 5606 1 chr1D.!!$R2 2678
2 TraesCS1D01G311500 chr1D 6913162 6915836 2674 False 2675.000000 2675 84.993000 2944 5606 1 chr1D.!!$F1 2662
3 TraesCS1D01G311500 chr1B 10004819 10007551 2732 True 2595.000000 2595 84.078000 2876 5604 1 chr1B.!!$R2 2728
4 TraesCS1D01G311500 chr1B 8817251 8819922 2671 True 2571.000000 2571 84.329000 2944 5606 1 chr1B.!!$R1 2662
5 TraesCS1D01G311500 chr1B 548190211 548201550 11339 True 2532.600000 6399 91.685000 126 6449 5 chr1B.!!$R4 6323
6 TraesCS1D01G311500 chr1B 9175366 9177519 2153 False 1768.000000 1768 81.744000 2928 5112 1 chr1B.!!$F1 2184
7 TraesCS1D01G311500 chr1B 8853027 8855853 2826 True 1443.500000 2737 83.177000 2969 5918 2 chr1B.!!$R3 2949
8 TraesCS1D01G311500 chr1A 8327128 8329684 2556 False 2455.000000 2455 84.227000 2925 5480 1 chr1A.!!$F1 2555
9 TraesCS1D01G311500 chr1A 7834083 7837337 3254 False 2276.000000 4215 93.623500 2128 5599 2 chr1A.!!$F2 3471
10 TraesCS1D01G311500 chr1A 9373823 9375704 1881 True 1690.000000 1690 83.177000 2886 4766 1 chr1A.!!$R1 1880
11 TraesCS1D01G311500 chr1A 8141494 8144516 3022 True 1643.000000 3053 84.391500 2928 6042 2 chr1A.!!$R2 3114
12 TraesCS1D01G311500 chr1A 8339057 8339913 856 False 339.333333 664 91.919667 1570 2603 3 chr1A.!!$F3 1033
13 TraesCS1D01G311500 chr5A 12191034 12195780 4746 True 1365.666667 3517 83.311333 1824 6156 3 chr5A.!!$R1 4332
14 TraesCS1D01G311500 chr5B 546143433 546145914 2481 True 1912.000000 1912 80.843000 2933 5413 1 chr5B.!!$R1 2480
15 TraesCS1D01G311500 chr5B 13773072 13777083 4011 True 1306.000000 3450 84.095333 1969 6060 3 chr5B.!!$R3 4091
16 TraesCS1D01G311500 chr5B 549553055 549553777 722 False 292.000000 462 84.663500 1102 1773 2 chr5B.!!$F2 671
17 TraesCS1D01G311500 chr4B 36632971 36635862 2891 True 1533.500000 2939 82.710500 2931 5918 2 chr4B.!!$R1 2987
18 TraesCS1D01G311500 chr5D 18081932 18086871 4939 False 384.666667 754 79.085667 1103 6106 3 chr5D.!!$F2 5003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.041238 TTCCCGTGAGTCCCTGATCT 59.959 55.000 0.00 0.0 0.00 2.75 F
71 72 0.176680 CCCGTGAGTCCCTGATCTTG 59.823 60.000 0.00 0.0 0.00 3.02 F
124 125 0.249120 ATTGAATCGGAGGCGTCACA 59.751 50.000 8.91 0.0 0.00 3.58 F
203 204 0.731417 CGTGTGTCTACGGTCCCTAG 59.269 60.000 0.00 0.0 40.22 3.02 F
1058 5899 1.272490 CTTCTCTTCCCACACGCTGTA 59.728 52.381 0.00 0.0 0.00 2.74 F
2083 7040 1.726248 GATTTGCCGACATTGCCAAAC 59.274 47.619 0.00 0.0 0.00 2.93 F
2736 8146 2.312741 ACCTGACCATGGTCCATTGAAT 59.687 45.455 36.27 15.7 43.97 2.57 F
4147 10167 0.108851 GCCCTACAACCCGCAAATTG 60.109 55.000 0.00 0.0 0.00 2.32 F
4383 10512 1.886542 CCAAAGGCAGGAGTTGTTACC 59.113 52.381 0.00 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1412 6351 0.106519 GCAATGGCACCATCCTAGGT 60.107 55.000 9.08 0.00 44.48 3.08 R
1963 6920 0.466739 CCCTCATGGCATGCTGCTTA 60.467 55.000 22.56 3.34 44.28 3.09 R
2285 7316 3.081804 CAAGCTTTGAAACCGTCCCTAT 58.918 45.455 0.00 0.00 0.00 2.57 R
2363 7484 2.225522 TGGATCAGAGGGAGTACCACAA 60.226 50.000 0.00 0.00 43.89 3.33 R
2736 8146 2.101783 CCATAATTGCAAGGCAGGACA 58.898 47.619 4.94 0.00 40.61 4.02 R
2918 8836 8.721478 TGCTGAAGAAGTGTGAATAATTTAGAC 58.279 33.333 0.00 0.00 0.00 2.59 R
4354 10483 3.384789 ACTCCTGCCTTTGGTTTTCTTTC 59.615 43.478 0.00 0.00 0.00 2.62 R
5106 11263 1.133823 TCCAATAGCACCATGCCGAAT 60.134 47.619 0.00 0.00 46.52 3.34 R
5671 11847 4.082408 TCCGTCCCATAATATAAGAGCGTG 60.082 45.833 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.959749 TTTTAGAGTTGTGTTGTGATATTTTCC 57.040 29.630 0.00 0.00 0.00 3.13
54 55 6.575162 AGAGTTGTGTTGTGATATTTTCCC 57.425 37.500 0.00 0.00 0.00 3.97
55 56 5.181245 AGAGTTGTGTTGTGATATTTTCCCG 59.819 40.000 0.00 0.00 0.00 5.14
56 57 4.825085 AGTTGTGTTGTGATATTTTCCCGT 59.175 37.500 0.00 0.00 0.00 5.28
57 58 4.757799 TGTGTTGTGATATTTTCCCGTG 57.242 40.909 0.00 0.00 0.00 4.94
58 59 4.390264 TGTGTTGTGATATTTTCCCGTGA 58.610 39.130 0.00 0.00 0.00 4.35
59 60 4.454161 TGTGTTGTGATATTTTCCCGTGAG 59.546 41.667 0.00 0.00 0.00 3.51
60 61 4.454504 GTGTTGTGATATTTTCCCGTGAGT 59.545 41.667 0.00 0.00 0.00 3.41
61 62 4.693566 TGTTGTGATATTTTCCCGTGAGTC 59.306 41.667 0.00 0.00 0.00 3.36
62 63 3.869065 TGTGATATTTTCCCGTGAGTCC 58.131 45.455 0.00 0.00 0.00 3.85
63 64 3.203716 GTGATATTTTCCCGTGAGTCCC 58.796 50.000 0.00 0.00 0.00 4.46
64 65 3.112263 TGATATTTTCCCGTGAGTCCCT 58.888 45.455 0.00 0.00 0.00 4.20
65 66 3.118408 TGATATTTTCCCGTGAGTCCCTG 60.118 47.826 0.00 0.00 0.00 4.45
66 67 1.358152 ATTTTCCCGTGAGTCCCTGA 58.642 50.000 0.00 0.00 0.00 3.86
67 68 1.358152 TTTTCCCGTGAGTCCCTGAT 58.642 50.000 0.00 0.00 0.00 2.90
68 69 0.902531 TTTCCCGTGAGTCCCTGATC 59.097 55.000 0.00 0.00 0.00 2.92
69 70 0.041238 TTCCCGTGAGTCCCTGATCT 59.959 55.000 0.00 0.00 0.00 2.75
70 71 0.041238 TCCCGTGAGTCCCTGATCTT 59.959 55.000 0.00 0.00 0.00 2.40
71 72 0.176680 CCCGTGAGTCCCTGATCTTG 59.823 60.000 0.00 0.00 0.00 3.02
72 73 1.186200 CCGTGAGTCCCTGATCTTGA 58.814 55.000 0.00 0.00 0.00 3.02
73 74 1.759445 CCGTGAGTCCCTGATCTTGAT 59.241 52.381 0.00 0.00 0.00 2.57
74 75 2.223923 CCGTGAGTCCCTGATCTTGATC 60.224 54.545 3.82 3.82 0.00 2.92
75 76 2.542618 CGTGAGTCCCTGATCTTGATCG 60.543 54.545 6.19 2.03 0.00 3.69
76 77 2.428890 GTGAGTCCCTGATCTTGATCGT 59.571 50.000 6.19 0.00 0.00 3.73
77 78 3.632604 GTGAGTCCCTGATCTTGATCGTA 59.367 47.826 6.19 0.00 0.00 3.43
78 79 3.632604 TGAGTCCCTGATCTTGATCGTAC 59.367 47.826 6.19 2.53 0.00 3.67
79 80 3.632333 AGTCCCTGATCTTGATCGTACA 58.368 45.455 6.19 0.00 0.00 2.90
80 81 3.381908 AGTCCCTGATCTTGATCGTACAC 59.618 47.826 6.19 1.73 0.00 2.90
81 82 2.357952 TCCCTGATCTTGATCGTACACG 59.642 50.000 6.19 0.00 41.45 4.49
82 83 2.099263 CCCTGATCTTGATCGTACACGT 59.901 50.000 1.19 0.00 40.80 4.49
83 84 3.428999 CCCTGATCTTGATCGTACACGTT 60.429 47.826 1.19 0.00 40.80 3.99
84 85 4.174009 CCTGATCTTGATCGTACACGTTT 58.826 43.478 1.19 0.00 40.80 3.60
85 86 5.337554 CCTGATCTTGATCGTACACGTTTA 58.662 41.667 1.19 0.00 40.80 2.01
86 87 5.229469 CCTGATCTTGATCGTACACGTTTAC 59.771 44.000 1.66 1.66 40.80 2.01
87 88 4.789629 TGATCTTGATCGTACACGTTTACG 59.210 41.667 24.39 24.39 45.10 3.18
104 105 6.835603 CGTTTACGTGTATGATTAGTGTACG 58.164 40.000 0.00 0.00 36.28 3.67
105 106 6.682441 CGTTTACGTGTATGATTAGTGTACGA 59.318 38.462 0.00 0.00 34.52 3.43
106 107 7.374228 CGTTTACGTGTATGATTAGTGTACGAT 59.626 37.037 0.00 0.00 34.52 3.73
107 108 9.013490 GTTTACGTGTATGATTAGTGTACGATT 57.987 33.333 0.00 0.00 34.52 3.34
108 109 8.551122 TTACGTGTATGATTAGTGTACGATTG 57.449 34.615 0.00 0.00 34.52 2.67
109 110 6.788243 ACGTGTATGATTAGTGTACGATTGA 58.212 36.000 0.00 0.00 34.52 2.57
110 111 7.252708 ACGTGTATGATTAGTGTACGATTGAA 58.747 34.615 0.00 0.00 34.52 2.69
111 112 7.919091 ACGTGTATGATTAGTGTACGATTGAAT 59.081 33.333 0.00 0.00 34.52 2.57
112 113 8.417928 CGTGTATGATTAGTGTACGATTGAATC 58.582 37.037 0.00 0.00 32.36 2.52
122 123 3.362581 GATTGAATCGGAGGCGTCA 57.637 52.632 8.91 0.00 0.00 4.35
123 124 0.931005 GATTGAATCGGAGGCGTCAC 59.069 55.000 8.91 0.00 0.00 3.67
124 125 0.249120 ATTGAATCGGAGGCGTCACA 59.751 50.000 8.91 0.00 0.00 3.58
148 149 3.496331 TCCCAAGCTCCCAACTTAAAAG 58.504 45.455 0.00 0.00 0.00 2.27
153 154 6.159293 CCAAGCTCCCAACTTAAAAGAAATC 58.841 40.000 0.00 0.00 0.00 2.17
154 155 6.239289 CCAAGCTCCCAACTTAAAAGAAATCA 60.239 38.462 0.00 0.00 0.00 2.57
155 156 6.976934 AGCTCCCAACTTAAAAGAAATCAA 57.023 33.333 0.00 0.00 0.00 2.57
156 157 7.360113 AGCTCCCAACTTAAAAGAAATCAAA 57.640 32.000 0.00 0.00 0.00 2.69
157 158 7.791029 AGCTCCCAACTTAAAAGAAATCAAAA 58.209 30.769 0.00 0.00 0.00 2.44
158 159 8.264347 AGCTCCCAACTTAAAAGAAATCAAAAA 58.736 29.630 0.00 0.00 0.00 1.94
203 204 0.731417 CGTGTGTCTACGGTCCCTAG 59.269 60.000 0.00 0.00 40.22 3.02
205 206 2.440409 GTGTGTCTACGGTCCCTAGAA 58.560 52.381 0.00 0.00 0.00 2.10
206 207 2.821969 GTGTGTCTACGGTCCCTAGAAA 59.178 50.000 0.00 0.00 0.00 2.52
426 486 3.333219 CCCAGCAGGCCCTCTCAA 61.333 66.667 0.00 0.00 0.00 3.02
452 512 1.433064 CCATTCATGAAACGCCCCG 59.567 57.895 13.09 0.00 0.00 5.73
453 513 1.312371 CCATTCATGAAACGCCCCGT 61.312 55.000 13.09 0.00 43.97 5.28
467 527 1.958069 GCCCCGTTCTTCTCTCTCTCT 60.958 57.143 0.00 0.00 0.00 3.10
468 528 2.021457 CCCCGTTCTTCTCTCTCTCTC 58.979 57.143 0.00 0.00 0.00 3.20
565 625 2.099062 CAGCGAGCAATGTTCGGC 59.901 61.111 20.14 12.51 38.45 5.54
594 654 2.512515 CGTAGAGCTTGGCAGGGC 60.513 66.667 0.00 2.45 0.00 5.19
639 699 1.293963 CTCTACGACGACCACGACCA 61.294 60.000 0.00 0.00 42.66 4.02
720 780 2.491022 CGGTTAGCCCCTCCTCTCG 61.491 68.421 0.00 0.00 0.00 4.04
775 835 5.416083 TGGTCAACTCATAGTTTCATACGG 58.584 41.667 0.00 0.00 36.03 4.02
831 891 7.663081 TCAACTAGTTGAATCTTGAAGAATGCT 59.337 33.333 31.26 0.00 45.56 3.79
842 902 6.821388 TCTTGAAGAATGCTACTCCTAATCC 58.179 40.000 0.00 0.00 0.00 3.01
854 914 6.408662 GCTACTCCTAATCCTGGTCAATTTCT 60.409 42.308 0.00 0.00 0.00 2.52
857 917 7.339482 ACTCCTAATCCTGGTCAATTTCTAAC 58.661 38.462 0.00 0.00 0.00 2.34
928 988 2.809706 CCGCAGGCATGGAAATGG 59.190 61.111 0.00 0.00 46.14 3.16
951 1011 6.183361 TGGAGCTCTCTTTTCCATTAGCATAT 60.183 38.462 14.64 0.00 36.13 1.78
970 5811 5.611844 GCATATTATTTGCTGTACGACGGTC 60.612 44.000 0.00 0.00 37.14 4.79
1058 5899 1.272490 CTTCTCTTCCCACACGCTGTA 59.728 52.381 0.00 0.00 0.00 2.74
1315 6247 7.101054 TGTAGATTAACCTTTCGCACTTACAT 58.899 34.615 0.00 0.00 0.00 2.29
1544 6487 3.396276 TGACTGAAATACCACAGGGGAAA 59.604 43.478 0.00 0.00 41.15 3.13
1693 6642 5.842328 TCTAACAGGGGTTGAACTAGAGAAA 59.158 40.000 0.00 0.00 37.88 2.52
1731 6688 3.196469 TGAAGCTGTAGATCACCCTGAAG 59.804 47.826 0.00 0.00 0.00 3.02
1924 6881 3.199071 AGGCTAATACCATGGTCGTTCAA 59.801 43.478 23.76 2.15 0.00 2.69
2083 7040 1.726248 GATTTGCCGACATTGCCAAAC 59.274 47.619 0.00 0.00 0.00 2.93
2285 7316 6.839134 TGAAAGTATGGTCCTATTCTGCTAGA 59.161 38.462 0.00 0.00 0.00 2.43
2376 7497 4.895668 TCGTATTTTTGTGGTACTCCCT 57.104 40.909 0.00 0.00 0.00 4.20
2387 7508 4.140686 TGTGGTACTCCCTCTGATCCATAT 60.141 45.833 0.00 0.00 0.00 1.78
2417 7538 4.039124 TCGCTCAAATGGATGTATCTAGCA 59.961 41.667 0.00 0.00 0.00 3.49
2418 7539 4.751600 CGCTCAAATGGATGTATCTAGCAA 59.248 41.667 0.00 0.00 0.00 3.91
2419 7540 5.410746 CGCTCAAATGGATGTATCTAGCAAT 59.589 40.000 0.00 0.00 0.00 3.56
2420 7541 6.609533 GCTCAAATGGATGTATCTAGCAATG 58.390 40.000 0.00 0.00 0.00 2.82
2421 7542 6.429078 GCTCAAATGGATGTATCTAGCAATGA 59.571 38.462 0.00 0.00 0.00 2.57
2422 7543 7.040892 GCTCAAATGGATGTATCTAGCAATGAA 60.041 37.037 0.00 0.00 0.00 2.57
2423 7544 8.750515 TCAAATGGATGTATCTAGCAATGAAA 57.249 30.769 0.00 0.00 0.00 2.69
2424 7545 9.358406 TCAAATGGATGTATCTAGCAATGAAAT 57.642 29.630 0.00 0.00 0.00 2.17
2427 7548 9.797642 AATGGATGTATCTAGCAATGAAATACA 57.202 29.630 1.90 1.90 37.26 2.29
2428 7549 9.970553 ATGGATGTATCTAGCAATGAAATACAT 57.029 29.630 9.54 9.54 42.96 2.29
2449 7570 7.071069 ACATCTAGATACATCCATTTGAGCA 57.929 36.000 4.54 0.00 0.00 4.26
2597 8007 7.668492 TGTTGGTTGGTTAGTAAAAGTGTTTT 58.332 30.769 0.00 0.00 36.67 2.43
2736 8146 2.312741 ACCTGACCATGGTCCATTGAAT 59.687 45.455 36.27 15.70 43.97 2.57
3195 9146 4.706962 GGCATATGGTTCAATAAGATCCCC 59.293 45.833 4.56 0.00 35.58 4.81
4147 10167 0.108851 GCCCTACAACCCGCAAATTG 60.109 55.000 0.00 0.00 0.00 2.32
4370 10499 5.539582 AAAAACGAAAGAAAACCAAAGGC 57.460 34.783 0.00 0.00 0.00 4.35
4383 10512 1.886542 CCAAAGGCAGGAGTTGTTACC 59.113 52.381 0.00 0.00 0.00 2.85
4610 10750 2.986728 AGGGGGTGTTAAGTGACTCAAT 59.013 45.455 0.00 0.00 0.00 2.57
4789 10935 7.402054 ACACATGTTAAATGGGTCTCTTGATA 58.598 34.615 0.00 0.00 27.60 2.15
5106 11263 2.030007 ACCGAAAGTCGATGTTTACGGA 60.030 45.455 24.15 0.00 43.74 4.69
5645 11821 3.724374 TCCGACCCAAAATATAAGAGCG 58.276 45.455 0.00 0.00 0.00 5.03
5650 11826 6.319399 CGACCCAAAATATAAGAGCGTTTTT 58.681 36.000 0.00 0.00 0.00 1.94
5662 11838 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
5783 11959 5.717119 CAAGGATGGGAACTTCAGAATTTG 58.283 41.667 0.00 0.00 36.27 2.32
5808 12001 6.927294 AATTGCAGCAGAATAGGTTAGTAC 57.073 37.500 0.00 0.00 0.00 2.73
5876 12071 8.931775 GTTTTCAAACTGTACCAAATCAAACTT 58.068 29.630 0.00 0.00 36.03 2.66
5968 12212 4.406003 AGACTACATCGGCCTGTTATTTCT 59.594 41.667 2.55 0.00 0.00 2.52
5970 12214 2.550978 ACATCGGCCTGTTATTTCTCG 58.449 47.619 0.00 0.00 0.00 4.04
6184 12433 4.096984 ACCTCTTCTTTGTGCAGTTTCTTG 59.903 41.667 0.00 0.00 0.00 3.02
6213 12462 0.892358 AACGTAGGTGGCGAGTGAGA 60.892 55.000 0.00 0.00 0.00 3.27
6282 12531 5.769662 CCTATGCAGCCAATTCTGGTTTATA 59.230 40.000 0.00 0.00 45.53 0.98
6406 12655 6.651225 ACTCTACTTCATTAACTTGCAAGGTC 59.349 38.462 29.18 0.00 0.00 3.85
6416 12665 3.705604 ACTTGCAAGGTCATTTGTTTCG 58.294 40.909 29.18 1.19 0.00 3.46
6445 12694 7.663081 TCTCATAGAACAGAAATTTCTTGTGCT 59.337 33.333 23.40 23.40 34.74 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.959749 GGAAAATATCACAACACAACTCTAAAA 57.040 29.630 0.00 0.00 0.00 1.52
28 29 8.573035 GGGAAAATATCACAACACAACTCTAAA 58.427 33.333 0.00 0.00 0.00 1.85
29 30 7.094975 CGGGAAAATATCACAACACAACTCTAA 60.095 37.037 0.00 0.00 0.00 2.10
30 31 6.370442 CGGGAAAATATCACAACACAACTCTA 59.630 38.462 0.00 0.00 0.00 2.43
31 32 5.181245 CGGGAAAATATCACAACACAACTCT 59.819 40.000 0.00 0.00 0.00 3.24
32 33 5.048991 ACGGGAAAATATCACAACACAACTC 60.049 40.000 0.00 0.00 0.00 3.01
33 34 4.825085 ACGGGAAAATATCACAACACAACT 59.175 37.500 0.00 0.00 0.00 3.16
34 35 4.915085 CACGGGAAAATATCACAACACAAC 59.085 41.667 0.00 0.00 0.00 3.32
35 36 4.822350 TCACGGGAAAATATCACAACACAA 59.178 37.500 0.00 0.00 0.00 3.33
36 37 4.390264 TCACGGGAAAATATCACAACACA 58.610 39.130 0.00 0.00 0.00 3.72
37 38 4.454504 ACTCACGGGAAAATATCACAACAC 59.545 41.667 0.00 0.00 0.00 3.32
38 39 4.647611 ACTCACGGGAAAATATCACAACA 58.352 39.130 0.00 0.00 0.00 3.33
39 40 4.094442 GGACTCACGGGAAAATATCACAAC 59.906 45.833 0.00 0.00 0.00 3.32
40 41 4.258543 GGACTCACGGGAAAATATCACAA 58.741 43.478 0.00 0.00 0.00 3.33
41 42 3.370103 GGGACTCACGGGAAAATATCACA 60.370 47.826 0.00 0.00 0.00 3.58
42 43 3.118371 AGGGACTCACGGGAAAATATCAC 60.118 47.826 0.00 0.00 0.00 3.06
43 44 3.112263 AGGGACTCACGGGAAAATATCA 58.888 45.455 0.00 0.00 0.00 2.15
44 45 3.134081 TCAGGGACTCACGGGAAAATATC 59.866 47.826 0.00 0.00 34.60 1.63
45 46 3.112263 TCAGGGACTCACGGGAAAATAT 58.888 45.455 0.00 0.00 34.60 1.28
46 47 2.542550 TCAGGGACTCACGGGAAAATA 58.457 47.619 0.00 0.00 34.60 1.40
47 48 1.358152 TCAGGGACTCACGGGAAAAT 58.642 50.000 0.00 0.00 34.60 1.82
48 49 1.278127 GATCAGGGACTCACGGGAAAA 59.722 52.381 0.00 0.00 34.60 2.29
49 50 0.902531 GATCAGGGACTCACGGGAAA 59.097 55.000 0.00 0.00 34.60 3.13
50 51 0.041238 AGATCAGGGACTCACGGGAA 59.959 55.000 0.00 0.00 34.60 3.97
51 52 0.041238 AAGATCAGGGACTCACGGGA 59.959 55.000 0.00 0.00 34.60 5.14
52 53 0.176680 CAAGATCAGGGACTCACGGG 59.823 60.000 0.00 0.00 34.60 5.28
53 54 1.186200 TCAAGATCAGGGACTCACGG 58.814 55.000 0.00 0.00 34.60 4.94
54 55 2.542618 CGATCAAGATCAGGGACTCACG 60.543 54.545 10.39 0.00 34.60 4.35
55 56 2.428890 ACGATCAAGATCAGGGACTCAC 59.571 50.000 10.39 0.00 34.60 3.51
56 57 2.739943 ACGATCAAGATCAGGGACTCA 58.260 47.619 10.39 0.00 34.60 3.41
57 58 3.632604 TGTACGATCAAGATCAGGGACTC 59.367 47.826 10.39 0.00 34.60 3.36
58 59 3.381908 GTGTACGATCAAGATCAGGGACT 59.618 47.826 10.39 0.00 43.88 3.85
59 60 3.707793 GTGTACGATCAAGATCAGGGAC 58.292 50.000 10.39 2.84 37.69 4.46
60 61 2.357952 CGTGTACGATCAAGATCAGGGA 59.642 50.000 10.39 0.00 43.02 4.20
61 62 2.099263 ACGTGTACGATCAAGATCAGGG 59.901 50.000 11.79 0.00 43.02 4.45
62 63 3.422417 ACGTGTACGATCAAGATCAGG 57.578 47.619 11.79 0.51 43.02 3.86
63 64 6.244377 GTAAACGTGTACGATCAAGATCAG 57.756 41.667 11.79 5.82 43.02 2.90
80 81 6.682441 TCGTACACTAATCATACACGTAAACG 59.318 38.462 0.04 0.04 46.33 3.60
81 82 7.953305 TCGTACACTAATCATACACGTAAAC 57.047 36.000 0.00 0.00 0.00 2.01
82 83 9.012448 CAATCGTACACTAATCATACACGTAAA 57.988 33.333 0.00 0.00 0.00 2.01
83 84 8.397148 TCAATCGTACACTAATCATACACGTAA 58.603 33.333 0.00 0.00 0.00 3.18
84 85 7.918643 TCAATCGTACACTAATCATACACGTA 58.081 34.615 0.00 0.00 0.00 3.57
85 86 6.788243 TCAATCGTACACTAATCATACACGT 58.212 36.000 0.00 0.00 0.00 4.49
86 87 7.673810 TTCAATCGTACACTAATCATACACG 57.326 36.000 0.00 0.00 0.00 4.49
104 105 0.931005 GTGACGCCTCCGATTCAATC 59.069 55.000 0.00 0.00 38.29 2.67
105 106 0.249120 TGTGACGCCTCCGATTCAAT 59.751 50.000 0.00 0.00 38.29 2.57
106 107 0.389817 CTGTGACGCCTCCGATTCAA 60.390 55.000 0.00 0.00 38.29 2.69
107 108 1.215382 CTGTGACGCCTCCGATTCA 59.785 57.895 0.00 0.00 38.29 2.57
108 109 2.167861 GCTGTGACGCCTCCGATTC 61.168 63.158 0.00 0.00 38.29 2.52
109 110 2.125512 GCTGTGACGCCTCCGATT 60.126 61.111 0.00 0.00 38.29 3.34
110 111 3.069980 GAGCTGTGACGCCTCCGAT 62.070 63.158 0.00 0.00 38.29 4.18
111 112 3.749064 GAGCTGTGACGCCTCCGA 61.749 66.667 0.00 0.00 38.29 4.55
112 113 4.803426 GGAGCTGTGACGCCTCCG 62.803 72.222 0.00 0.00 41.14 4.63
113 114 4.459089 GGGAGCTGTGACGCCTCC 62.459 72.222 11.52 11.52 0.00 4.30
114 115 3.240134 TTGGGAGCTGTGACGCCTC 62.240 63.158 0.00 0.00 0.00 4.70
115 116 3.241530 TTGGGAGCTGTGACGCCT 61.242 61.111 0.00 0.00 0.00 5.52
116 117 2.743928 CTTGGGAGCTGTGACGCC 60.744 66.667 0.00 0.00 0.00 5.68
117 118 3.426568 GCTTGGGAGCTGTGACGC 61.427 66.667 0.00 0.00 45.65 5.19
187 188 4.525912 TTTTTCTAGGGACCGTAGACAC 57.474 45.455 20.94 0.00 0.00 3.67
205 206 7.820648 ACTCAAGATACGAATGCAGAATTTTT 58.179 30.769 0.00 0.00 0.00 1.94
206 207 7.383102 ACTCAAGATACGAATGCAGAATTTT 57.617 32.000 0.00 0.00 0.00 1.82
260 261 9.926158 ATGAATAAATTTTTCACAGCACATGTA 57.074 25.926 14.08 0.00 41.41 2.29
339 340 1.202143 CGACGCACTACTCACATGCTA 60.202 52.381 0.00 0.00 37.20 3.49
347 407 1.268133 GGAGACATCGACGCACTACTC 60.268 57.143 0.00 0.00 0.00 2.59
351 411 3.681473 TGGAGACATCGACGCACT 58.319 55.556 0.00 0.00 33.40 4.40
420 480 1.450531 GAATGGGCCGGCATTGAGAG 61.451 60.000 30.85 0.00 0.00 3.20
421 481 1.453745 GAATGGGCCGGCATTGAGA 60.454 57.895 30.85 4.63 0.00 3.27
422 482 1.111116 ATGAATGGGCCGGCATTGAG 61.111 55.000 30.85 0.00 0.00 3.02
423 483 1.076118 ATGAATGGGCCGGCATTGA 60.076 52.632 30.85 15.17 0.00 2.57
424 484 1.068417 CATGAATGGGCCGGCATTG 59.932 57.895 30.85 10.22 0.00 2.82
425 485 0.687098 TTCATGAATGGGCCGGCATT 60.687 50.000 30.85 20.59 0.00 3.56
426 486 0.687098 TTTCATGAATGGGCCGGCAT 60.687 50.000 30.85 11.77 0.00 4.40
452 512 5.104259 AGGAGAGAGAGAGAGAGAAGAAC 57.896 47.826 0.00 0.00 0.00 3.01
453 513 4.164221 GGAGGAGAGAGAGAGAGAGAAGAA 59.836 50.000 0.00 0.00 0.00 2.52
454 514 3.711704 GGAGGAGAGAGAGAGAGAGAAGA 59.288 52.174 0.00 0.00 0.00 2.87
455 515 3.493350 CGGAGGAGAGAGAGAGAGAGAAG 60.493 56.522 0.00 0.00 0.00 2.85
457 517 2.039418 CGGAGGAGAGAGAGAGAGAGA 58.961 57.143 0.00 0.00 0.00 3.10
467 527 2.691779 GGAGGGGTCGGAGGAGAGA 61.692 68.421 0.00 0.00 0.00 3.10
468 528 2.123640 GGAGGGGTCGGAGGAGAG 60.124 72.222 0.00 0.00 0.00 3.20
585 645 4.757355 CCCCATTCGCCCTGCCAA 62.757 66.667 0.00 0.00 0.00 4.52
594 654 2.885644 CGCGTCACTCCCCATTCG 60.886 66.667 0.00 0.00 0.00 3.34
720 780 7.753309 ACTAGTCTGATGTGGTATATGAGAC 57.247 40.000 0.00 0.00 38.53 3.36
775 835 8.356657 AGATTCAGACTTATGCAGTAGTATGAC 58.643 37.037 21.17 14.01 40.96 3.06
831 891 8.483758 GTTAGAAATTGACCAGGATTAGGAGTA 58.516 37.037 0.00 0.00 0.00 2.59
842 902 8.567285 AAATACTCCTGTTAGAAATTGACCAG 57.433 34.615 0.00 0.00 0.00 4.00
854 914 9.706691 CAACTACAGAAAGAAATACTCCTGTTA 57.293 33.333 0.00 0.00 36.43 2.41
857 917 7.872993 TGTCAACTACAGAAAGAAATACTCCTG 59.127 37.037 0.00 0.00 33.01 3.86
919 979 4.276642 GGAAAAGAGAGCTCCATTTCCAT 58.723 43.478 31.12 13.68 45.59 3.41
928 988 7.742556 AATATGCTAATGGAAAAGAGAGCTC 57.257 36.000 5.27 5.27 0.00 4.09
951 1011 3.581024 AGACCGTCGTACAGCAAATAA 57.419 42.857 0.00 0.00 0.00 1.40
959 1019 2.744202 GAGGTAGAAAGACCGTCGTACA 59.256 50.000 0.00 0.00 44.88 2.90
960 1020 3.006247 AGAGGTAGAAAGACCGTCGTAC 58.994 50.000 0.00 0.00 44.88 3.67
970 5811 5.046950 AGCTTGTAGAACCAGAGGTAGAAAG 60.047 44.000 0.00 0.00 33.12 2.62
1058 5899 8.998377 GCAATAGTTGGGAAAATACAATTTTGT 58.002 29.630 2.51 1.08 44.86 2.83
1315 6247 1.358152 AATCTTCCCCTCGGTGAACA 58.642 50.000 0.00 0.00 0.00 3.18
1412 6351 0.106519 GCAATGGCACCATCCTAGGT 60.107 55.000 9.08 0.00 44.48 3.08
1693 6642 2.349886 GCTTCATCGATTTCAAGTCGCT 59.650 45.455 0.00 0.00 38.88 4.93
1742 6699 7.437862 CAGTTGGCAAACTTAAAACACATATGT 59.562 33.333 2.90 1.41 44.47 2.29
1924 6881 2.255252 GCCAACAACGCAATCGCT 59.745 55.556 0.00 0.00 39.84 4.93
1960 6917 2.227194 CTCATGGCATGCTGCTTATCA 58.773 47.619 22.56 5.25 44.28 2.15
1963 6920 0.466739 CCCTCATGGCATGCTGCTTA 60.467 55.000 22.56 3.34 44.28 3.09
2285 7316 3.081804 CAAGCTTTGAAACCGTCCCTAT 58.918 45.455 0.00 0.00 0.00 2.57
2363 7484 2.225522 TGGATCAGAGGGAGTACCACAA 60.226 50.000 0.00 0.00 43.89 3.33
2376 7497 5.301805 TGAGCGACAAGTAATATGGATCAGA 59.698 40.000 0.00 0.00 0.00 3.27
2387 7508 4.323417 ACATCCATTTGAGCGACAAGTAA 58.677 39.130 0.00 0.00 39.77 2.24
2422 7543 9.664332 GCTCAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
2423 7544 8.819845 TGCTCAAATGGATGTATCTAGATGTAT 58.180 33.333 15.79 9.11 0.00 2.29
2424 7545 8.193953 TGCTCAAATGGATGTATCTAGATGTA 57.806 34.615 15.79 4.44 0.00 2.29
2425 7546 7.071069 TGCTCAAATGGATGTATCTAGATGT 57.929 36.000 15.79 1.25 0.00 3.06
2426 7547 7.443272 TGTTGCTCAAATGGATGTATCTAGATG 59.557 37.037 15.79 0.00 0.00 2.90
2427 7548 7.512130 TGTTGCTCAAATGGATGTATCTAGAT 58.488 34.615 10.73 10.73 0.00 1.98
2428 7549 6.888105 TGTTGCTCAAATGGATGTATCTAGA 58.112 36.000 0.00 0.00 0.00 2.43
2429 7550 7.281774 ACTTGTTGCTCAAATGGATGTATCTAG 59.718 37.037 0.00 0.00 35.48 2.43
2430 7551 7.112122 ACTTGTTGCTCAAATGGATGTATCTA 58.888 34.615 0.00 0.00 35.48 1.98
2431 7552 5.948162 ACTTGTTGCTCAAATGGATGTATCT 59.052 36.000 0.00 0.00 35.48 1.98
2432 7553 6.199937 ACTTGTTGCTCAAATGGATGTATC 57.800 37.500 0.00 0.00 35.48 2.24
2449 7570 4.905456 TCCCTCCGATCCATATTACTTGTT 59.095 41.667 0.00 0.00 0.00 2.83
2597 8007 8.109634 AGGGCTATCTTTGAATAGAACTTTTCA 58.890 33.333 4.19 4.19 31.98 2.69
2612 8022 3.726837 TTAGAGGGGAGGGCTATCTTT 57.273 47.619 0.00 0.00 0.00 2.52
2673 8083 5.476945 CCAAGCTTACTATTCACCAACCTTT 59.523 40.000 0.00 0.00 0.00 3.11
2736 8146 2.101783 CCATAATTGCAAGGCAGGACA 58.898 47.619 4.94 0.00 40.61 4.02
2918 8836 8.721478 TGCTGAAGAAGTGTGAATAATTTAGAC 58.279 33.333 0.00 0.00 0.00 2.59
4354 10483 3.384789 ACTCCTGCCTTTGGTTTTCTTTC 59.615 43.478 0.00 0.00 0.00 2.62
4383 10512 9.936759 AACCCAAAACCAATAATACTTACAATG 57.063 29.630 0.00 0.00 0.00 2.82
4610 10750 5.422331 AGCCTTTTCACTGCTATAGTAGTCA 59.578 40.000 19.34 5.43 38.95 3.41
4789 10935 7.772292 TGCATTGCTCTTCTTAAATAGATGACT 59.228 33.333 10.49 0.00 34.41 3.41
5106 11263 1.133823 TCCAATAGCACCATGCCGAAT 60.134 47.619 0.00 0.00 46.52 3.34
5662 11838 9.042008 CCATAATATAAGAGCGTGTTTTACACT 57.958 33.333 8.18 0.00 46.46 3.55
5667 11843 6.202188 CGTCCCATAATATAAGAGCGTGTTTT 59.798 38.462 0.00 0.00 0.00 2.43
5671 11847 4.082408 TCCGTCCCATAATATAAGAGCGTG 60.082 45.833 0.00 0.00 0.00 5.34
5783 11959 6.927294 ACTAACCTATTCTGCTGCAATTAC 57.073 37.500 3.02 0.00 0.00 1.89
5968 12212 6.793492 TCATACAAATCACACACAAATCGA 57.207 33.333 0.00 0.00 0.00 3.59
5970 12214 7.699391 CAGGATCATACAAATCACACACAAATC 59.301 37.037 0.00 0.00 0.00 2.17
6213 12462 6.845758 ACTGGTGTCATTTCAATCATGATT 57.154 33.333 15.36 15.36 34.96 2.57
6335 12584 7.403312 TTCAAGTCATCAGTTCTTGGAAAAA 57.597 32.000 0.00 0.00 38.99 1.94
6339 12588 8.102676 TCATATTTCAAGTCATCAGTTCTTGGA 58.897 33.333 0.00 0.00 38.99 3.53
6392 12641 5.746245 CGAAACAAATGACCTTGCAAGTTAA 59.254 36.000 24.35 4.34 0.00 2.01
6406 12655 8.282592 TCTGTTCTATGAGAAACGAAACAAATG 58.717 33.333 0.00 0.00 35.75 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.