Multiple sequence alignment - TraesCS1D01G311200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G311200 chr1D 100.000 4595 0 0 1 4595 407217818 407213224 0.000000e+00 8486.0
1 TraesCS1D01G311200 chr1D 81.679 262 39 7 4324 4584 456174208 456173955 4.660000e-50 209.0
2 TraesCS1D01G311200 chr1D 88.298 94 11 0 612 705 436192581 436192674 3.760000e-21 113.0
3 TraesCS1D01G311200 chr1A 89.190 2433 133 55 707 3064 502832274 502829897 0.000000e+00 2916.0
4 TraesCS1D01G311200 chr1A 91.403 663 41 8 1 654 502839762 502839107 0.000000e+00 894.0
5 TraesCS1D01G311200 chr1A 89.689 611 45 5 3181 3788 502829585 502828990 0.000000e+00 763.0
6 TraesCS1D01G311200 chr1A 93.333 195 11 2 3914 4106 502828858 502828664 2.090000e-73 287.0
7 TraesCS1D01G311200 chr1A 91.200 125 10 1 3064 3188 502829729 502829606 7.910000e-38 169.0
8 TraesCS1D01G311200 chr1A 94.792 96 5 0 3782 3877 502828948 502828853 2.860000e-32 150.0
9 TraesCS1D01G311200 chr1A 86.170 94 13 0 612 705 533450836 533450929 8.130000e-18 102.0
10 TraesCS1D01G311200 chr1A 88.889 54 6 0 645 698 8121893 8121946 2.970000e-07 67.6
11 TraesCS1D01G311200 chr1B 89.849 1793 113 29 1203 2944 547586767 547584993 0.000000e+00 2239.0
12 TraesCS1D01G311200 chr1B 90.156 1026 83 11 3065 4074 547584792 547583769 0.000000e+00 1319.0
13 TraesCS1D01G311200 chr1B 87.380 626 48 11 35 652 547588071 547587469 0.000000e+00 689.0
14 TraesCS1D01G311200 chr1B 84.127 504 55 13 721 1202 547587509 547587009 9.000000e-127 464.0
15 TraesCS1D01G311200 chr1B 85.862 290 31 7 4309 4595 547582063 547581781 2.690000e-77 300.0
16 TraesCS1D01G311200 chr1B 77.692 260 46 9 4281 4537 646175358 646175608 1.030000e-31 148.0
17 TraesCS1D01G311200 chr5B 80.872 711 119 15 1315 2017 82464841 82465542 1.120000e-150 544.0
18 TraesCS1D01G311200 chr5D 81.113 683 110 14 1343 2017 71898955 71898284 3.150000e-146 529.0
19 TraesCS1D01G311200 chr5A 79.196 721 131 14 1315 2026 64379990 64379280 2.490000e-132 483.0
20 TraesCS1D01G311200 chr5A 79.618 314 51 9 4280 4589 570360678 570360982 3.600000e-51 213.0
21 TraesCS1D01G311200 chr5A 100.000 29 0 0 678 706 662667726 662667698 2.000000e-03 54.7
22 TraesCS1D01G311200 chr7D 87.538 329 36 4 3779 4106 576647120 576647444 4.340000e-100 375.0
23 TraesCS1D01G311200 chr3B 83.988 331 41 6 3779 4106 697906774 697907095 1.610000e-79 307.0
24 TraesCS1D01G311200 chr3B 100.000 28 0 0 674 701 74292845 74292872 8.000000e-03 52.8
25 TraesCS1D01G311200 chr3D 82.175 331 41 7 3779 4106 527671857 527672172 7.580000e-68 268.0
26 TraesCS1D01G311200 chr3D 96.875 32 1 0 678 709 430148130 430148161 2.000000e-03 54.7
27 TraesCS1D01G311200 chr2B 81.350 311 48 6 4289 4595 216713078 216712774 1.280000e-60 244.0
28 TraesCS1D01G311200 chr6B 80.906 309 48 8 4281 4586 45555665 45555365 2.760000e-57 233.0
29 TraesCS1D01G311200 chr3A 80.128 312 51 8 4281 4590 363408434 363408736 5.980000e-54 222.0
30 TraesCS1D01G311200 chr2D 78.445 283 54 4 4314 4595 63790867 63790591 1.310000e-40 178.0
31 TraesCS1D01G311200 chr2A 80.208 192 35 3 4279 4469 624315195 624315006 1.720000e-29 141.0
32 TraesCS1D01G311200 chr4A 75.633 316 51 15 4280 4591 629302079 629302372 2.880000e-27 134.0
33 TraesCS1D01G311200 chr4D 86.316 95 6 3 607 701 388128001 388127914 3.780000e-16 97.1
34 TraesCS1D01G311200 chr4D 100.000 28 0 0 674 701 443176314 443176341 8.000000e-03 52.8
35 TraesCS1D01G311200 chr6D 100.000 28 0 0 674 701 380997226 380997253 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G311200 chr1D 407213224 407217818 4594 True 8486.0 8486 100.0000 1 4595 1 chr1D.!!$R1 4594
1 TraesCS1D01G311200 chr1A 502839107 502839762 655 True 894.0 894 91.4030 1 654 1 chr1A.!!$R1 653
2 TraesCS1D01G311200 chr1A 502828664 502832274 3610 True 857.0 2916 91.6408 707 4106 5 chr1A.!!$R2 3399
3 TraesCS1D01G311200 chr1B 547581781 547588071 6290 True 1002.2 2239 87.4748 35 4595 5 chr1B.!!$R1 4560
4 TraesCS1D01G311200 chr5B 82464841 82465542 701 False 544.0 544 80.8720 1315 2017 1 chr5B.!!$F1 702
5 TraesCS1D01G311200 chr5D 71898284 71898955 671 True 529.0 529 81.1130 1343 2017 1 chr5D.!!$R1 674
6 TraesCS1D01G311200 chr5A 64379280 64379990 710 True 483.0 483 79.1960 1315 2026 1 chr5A.!!$R1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 751 0.389757 GCTACTCCCTCCGTTCCATC 59.610 60.000 0.00 0.0 0.00 3.51 F
1796 2081 0.814457 AACTCTGAGCTAGCCAGTCG 59.186 55.000 23.87 19.5 33.57 4.18 F
2957 3331 1.064389 GGAAGCTAAATCTGTGGGGCT 60.064 52.381 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2389 2735 1.048724 TCCCCTCAATAGCTGGTCCG 61.049 60.0 0.0 0.0 0.00 4.79 R
3414 3991 0.179006 GGCAGGAATCAGGATGGGTC 60.179 60.0 0.0 0.0 36.16 4.46 R
3982 4608 0.243636 CAGTGGGGCGTTTCCATTTC 59.756 55.0 0.0 0.0 36.58 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.459158 AGATCGCATCTCCCTGGCT 60.459 57.895 0.00 0.00 33.42 4.75
30 31 1.005156 GATCGCATCTCCCTGGCTC 60.005 63.158 0.00 0.00 0.00 4.70
31 32 1.459158 ATCGCATCTCCCTGGCTCT 60.459 57.895 0.00 0.00 0.00 4.09
32 33 1.470996 ATCGCATCTCCCTGGCTCTC 61.471 60.000 0.00 0.00 0.00 3.20
33 34 2.828145 GCATCTCCCTGGCTCTCC 59.172 66.667 0.00 0.00 0.00 3.71
328 337 3.314080 GGTATTATTTTGCCGCACTGCTA 59.686 43.478 0.00 0.00 0.00 3.49
351 360 5.023533 TCTTCTTCCGCTTATATGCTTGT 57.976 39.130 8.77 0.00 0.00 3.16
393 402 1.698506 TGGAGGACCGCAAAATTGTT 58.301 45.000 0.00 0.00 39.42 2.83
430 439 6.832900 TGTGGATGAGTAATTGGATTGCATTA 59.167 34.615 0.00 0.00 0.00 1.90
438 447 8.962884 AGTAATTGGATTGCATTATTTTTCCC 57.037 30.769 0.00 0.00 0.00 3.97
441 450 8.454570 AATTGGATTGCATTATTTTTCCCATC 57.545 30.769 0.00 0.00 0.00 3.51
459 468 0.534877 TCAAATGCAGACACAGCCGT 60.535 50.000 0.00 0.00 0.00 5.68
572 585 0.889994 CAGCCACCATTTGCAAGCTA 59.110 50.000 8.14 0.00 0.00 3.32
610 623 9.823647 TCTCCTAGTCTCTTTTGCATAAATAAG 57.176 33.333 0.00 0.00 0.00 1.73
613 626 9.547753 CCTAGTCTCTTTTGCATAAATAAGCTA 57.452 33.333 0.00 0.12 0.00 3.32
620 633 8.893727 TCTTTTGCATAAATAAGCTACTCCTTC 58.106 33.333 0.00 0.00 0.00 3.46
625 638 6.073711 GCATAAATAAGCTACTCCTTCCGTTC 60.074 42.308 0.00 0.00 0.00 3.95
637 650 4.721132 TCCTTCCGTTCCAAAATAAGTGT 58.279 39.130 0.00 0.00 0.00 3.55
639 652 4.378046 CCTTCCGTTCCAAAATAAGTGTCG 60.378 45.833 0.00 0.00 0.00 4.35
642 655 3.223157 CGTTCCAAAATAAGTGTCGTGC 58.777 45.455 0.00 0.00 0.00 5.34
644 657 4.219033 GTTCCAAAATAAGTGTCGTGCTG 58.781 43.478 0.00 0.00 0.00 4.41
654 667 3.527533 AGTGTCGTGCTGTTAGTTCAAA 58.472 40.909 0.00 0.00 0.00 2.69
655 668 4.127171 AGTGTCGTGCTGTTAGTTCAAAT 58.873 39.130 0.00 0.00 0.00 2.32
656 669 4.574828 AGTGTCGTGCTGTTAGTTCAAATT 59.425 37.500 0.00 0.00 0.00 1.82
657 670 5.065988 AGTGTCGTGCTGTTAGTTCAAATTT 59.934 36.000 0.00 0.00 0.00 1.82
658 671 5.171337 GTGTCGTGCTGTTAGTTCAAATTTG 59.829 40.000 12.15 12.15 0.00 2.32
659 672 5.065346 TGTCGTGCTGTTAGTTCAAATTTGA 59.935 36.000 16.91 16.91 34.92 2.69
660 673 5.968848 GTCGTGCTGTTAGTTCAAATTTGAA 59.031 36.000 26.01 26.01 44.31 2.69
673 686 7.917720 TTCAAATTTGAACTAAAACTACGGC 57.082 32.000 26.01 0.00 41.88 5.68
674 687 7.028926 TCAAATTTGAACTAAAACTACGGCA 57.971 32.000 18.45 0.00 33.55 5.69
675 688 6.913673 TCAAATTTGAACTAAAACTACGGCAC 59.086 34.615 18.45 0.00 33.55 5.01
676 689 6.628919 AATTTGAACTAAAACTACGGCACT 57.371 33.333 0.00 0.00 0.00 4.40
677 690 6.628919 ATTTGAACTAAAACTACGGCACTT 57.371 33.333 0.00 0.00 0.00 3.16
678 691 7.733402 ATTTGAACTAAAACTACGGCACTTA 57.267 32.000 0.00 0.00 0.00 2.24
679 692 7.733402 TTTGAACTAAAACTACGGCACTTAT 57.267 32.000 0.00 0.00 0.00 1.73
680 693 7.733402 TTGAACTAAAACTACGGCACTTATT 57.267 32.000 0.00 0.00 0.00 1.40
681 694 7.733402 TGAACTAAAACTACGGCACTTATTT 57.267 32.000 0.00 0.00 0.00 1.40
682 695 8.156994 TGAACTAAAACTACGGCACTTATTTT 57.843 30.769 0.00 0.00 0.00 1.82
683 696 9.270640 TGAACTAAAACTACGGCACTTATTTTA 57.729 29.630 0.00 0.00 0.00 1.52
684 697 9.750882 GAACTAAAACTACGGCACTTATTTTAG 57.249 33.333 14.94 14.94 41.83 1.85
685 698 9.492973 AACTAAAACTACGGCACTTATTTTAGA 57.507 29.630 19.91 0.00 39.97 2.10
686 699 9.492973 ACTAAAACTACGGCACTTATTTTAGAA 57.507 29.630 19.91 0.00 39.97 2.10
687 700 9.750882 CTAAAACTACGGCACTTATTTTAGAAC 57.249 33.333 12.73 0.00 39.97 3.01
688 701 6.399204 AACTACGGCACTTATTTTAGAACG 57.601 37.500 0.00 0.00 0.00 3.95
689 702 4.866486 ACTACGGCACTTATTTTAGAACGG 59.134 41.667 0.00 0.00 0.00 4.44
690 703 3.929094 ACGGCACTTATTTTAGAACGGA 58.071 40.909 0.00 0.00 0.00 4.69
691 704 3.930848 ACGGCACTTATTTTAGAACGGAG 59.069 43.478 0.00 0.00 0.00 4.63
692 705 3.308866 CGGCACTTATTTTAGAACGGAGG 59.691 47.826 0.00 0.00 0.00 4.30
693 706 3.626217 GGCACTTATTTTAGAACGGAGGG 59.374 47.826 0.00 0.00 0.00 4.30
694 707 4.510571 GCACTTATTTTAGAACGGAGGGA 58.489 43.478 0.00 0.00 0.00 4.20
695 708 4.571176 GCACTTATTTTAGAACGGAGGGAG 59.429 45.833 0.00 0.00 0.00 4.30
696 709 5.731591 CACTTATTTTAGAACGGAGGGAGT 58.268 41.667 0.00 0.00 0.00 3.85
697 710 6.628844 GCACTTATTTTAGAACGGAGGGAGTA 60.629 42.308 0.00 0.00 0.00 2.59
698 711 7.498443 CACTTATTTTAGAACGGAGGGAGTAT 58.502 38.462 0.00 0.00 0.00 2.12
699 712 7.985752 CACTTATTTTAGAACGGAGGGAGTATT 59.014 37.037 0.00 0.00 0.00 1.89
700 713 8.546322 ACTTATTTTAGAACGGAGGGAGTATTT 58.454 33.333 0.00 0.00 0.00 1.40
701 714 8.726870 TTATTTTAGAACGGAGGGAGTATTTG 57.273 34.615 0.00 0.00 0.00 2.32
702 715 5.750352 TTTAGAACGGAGGGAGTATTTGT 57.250 39.130 0.00 0.00 0.00 2.83
703 716 3.611766 AGAACGGAGGGAGTATTTGTG 57.388 47.619 0.00 0.00 0.00 3.33
704 717 3.170717 AGAACGGAGGGAGTATTTGTGA 58.829 45.455 0.00 0.00 0.00 3.58
705 718 3.775316 AGAACGGAGGGAGTATTTGTGAT 59.225 43.478 0.00 0.00 0.00 3.06
720 733 8.458843 AGTATTTGTGATGTAGTTGGTATTTGC 58.541 33.333 0.00 0.00 0.00 3.68
724 737 6.707290 TGTGATGTAGTTGGTATTTGCTACT 58.293 36.000 0.00 0.00 35.95 2.57
738 751 0.389757 GCTACTCCCTCCGTTCCATC 59.610 60.000 0.00 0.00 0.00 3.51
761 774 8.775884 CATCATTATTGTCGTTGTTTTAGTTCG 58.224 33.333 0.00 0.00 0.00 3.95
783 796 2.557490 GTTCCTCGAACTCTGTACACCT 59.443 50.000 0.00 0.00 39.23 4.00
834 858 1.766496 TGCCTTATACTGCTGGTACCC 59.234 52.381 10.07 0.00 32.72 3.69
849 873 1.635817 TACCCAGCCTTGGCTCCATC 61.636 60.000 11.72 0.00 43.58 3.51
899 923 6.800072 TTGTTTCACTATTGGGGTTTCTTT 57.200 33.333 0.00 0.00 0.00 2.52
914 946 1.647346 TCTTTATTACCGTGCTGGCG 58.353 50.000 0.00 0.00 43.94 5.69
925 957 4.819761 GCTGGCGGCGAGTGATCA 62.820 66.667 12.98 0.00 0.00 2.92
953 985 7.575414 TTATTCTCTCTTCGCTCAGATAGTT 57.425 36.000 0.00 0.00 0.00 2.24
957 989 4.200092 TCTCTTCGCTCAGATAGTTGCTA 58.800 43.478 0.00 0.00 0.00 3.49
1070 1102 4.043200 GGTGCTTGTGGCCGCTTC 62.043 66.667 18.96 6.95 40.92 3.86
1114 1146 1.753078 TCGCCGAGTGAGCAGGTAT 60.753 57.895 0.00 0.00 0.00 2.73
1128 1160 2.026641 CAGGTATGCAGGGGTTGAATG 58.973 52.381 0.00 0.00 0.00 2.67
1130 1162 2.024414 GGTATGCAGGGGTTGAATGAC 58.976 52.381 0.00 0.00 0.00 3.06
1131 1163 1.670811 GTATGCAGGGGTTGAATGACG 59.329 52.381 0.00 0.00 0.00 4.35
1175 1210 6.086222 CGTGGGATTTTCTACAGATTTTGTG 58.914 40.000 0.00 0.00 41.10 3.33
1186 1221 5.199024 ACAGATTTTGTGTTGCATTGCTA 57.801 34.783 10.49 0.00 38.99 3.49
1281 1557 4.595762 TCTGGTGGTAGTTAACTGTGTC 57.404 45.455 18.56 6.31 0.00 3.67
1302 1578 4.333926 GTCTGATGATTAACAAGAGCCACC 59.666 45.833 0.00 0.00 0.00 4.61
1363 1644 8.961294 TCATTTTTGTTCCAAGATGTTCAATT 57.039 26.923 0.00 0.00 0.00 2.32
1503 1788 2.942376 CCACCGCTTGCTCAACATAATA 59.058 45.455 0.00 0.00 0.00 0.98
1521 1806 7.424001 ACATAATAACTTAGCTGACGTACCTC 58.576 38.462 0.00 0.00 0.00 3.85
1526 1811 3.181499 ACTTAGCTGACGTACCTCATTCG 60.181 47.826 0.00 0.00 0.00 3.34
1645 1930 9.177608 TCTTGTCTATTCCATGAAATTTGGTAG 57.822 33.333 0.00 0.00 35.64 3.18
1796 2081 0.814457 AACTCTGAGCTAGCCAGTCG 59.186 55.000 23.87 19.50 33.57 4.18
1808 2093 4.514441 GCTAGCCAGTCGACTACACTAATA 59.486 45.833 19.57 4.00 0.00 0.98
1809 2094 5.181622 GCTAGCCAGTCGACTACACTAATAT 59.818 44.000 19.57 0.00 0.00 1.28
1810 2095 6.370994 GCTAGCCAGTCGACTACACTAATATA 59.629 42.308 19.57 0.00 0.00 0.86
1811 2096 6.557291 AGCCAGTCGACTACACTAATATAC 57.443 41.667 19.57 0.00 0.00 1.47
1812 2097 6.060136 AGCCAGTCGACTACACTAATATACA 58.940 40.000 19.57 0.00 0.00 2.29
1813 2098 6.715718 AGCCAGTCGACTACACTAATATACAT 59.284 38.462 19.57 0.00 0.00 2.29
1814 2099 7.881751 AGCCAGTCGACTACACTAATATACATA 59.118 37.037 19.57 0.00 0.00 2.29
1853 2139 9.624697 TGTGATGATTTGCTTTTTATCTTGTAC 57.375 29.630 0.00 0.00 0.00 2.90
1897 2183 4.781775 TGGAGACAAAAACCTGGAACTA 57.218 40.909 0.00 0.00 37.44 2.24
2107 2409 4.279169 TGATTGGAAAGTTTGCCTTCTCAG 59.721 41.667 4.53 0.00 31.27 3.35
2127 2429 3.004734 CAGTTTGAGGAAATGGGTCACAC 59.995 47.826 0.00 0.00 29.96 3.82
2194 2496 4.868172 ATCACCTCCTTGATGGAAATCA 57.132 40.909 0.00 0.00 45.63 2.57
2227 2561 8.095169 CGAAATAACTATTCTAGGCCAGGTTAT 58.905 37.037 5.01 7.04 32.19 1.89
2229 2563 8.743636 AATAACTATTCTAGGCCAGGTTATCT 57.256 34.615 5.01 0.00 31.04 1.98
2230 2564 9.839185 AATAACTATTCTAGGCCAGGTTATCTA 57.161 33.333 5.01 0.00 31.04 1.98
2283 2627 2.356665 TTGCAGAACAGGCACCTAAA 57.643 45.000 0.00 0.00 41.75 1.85
2405 2751 2.167693 TGTTACGGACCAGCTATTGAGG 59.832 50.000 0.00 0.00 0.00 3.86
2406 2752 1.410004 TACGGACCAGCTATTGAGGG 58.590 55.000 0.00 0.00 0.00 4.30
2407 2753 1.338136 ACGGACCAGCTATTGAGGGG 61.338 60.000 0.00 0.00 0.00 4.79
2441 2787 5.791336 AAAGGTTTCCAGATTTTCCAGAC 57.209 39.130 0.00 0.00 0.00 3.51
2447 2793 3.399330 TCCAGATTTTCCAGACGAACAC 58.601 45.455 0.00 0.00 0.00 3.32
2571 2918 5.930837 AGAGACCGAGAAATGAGAAAGAT 57.069 39.130 0.00 0.00 0.00 2.40
2577 2924 4.033358 CCGAGAAATGAGAAAGATGAACCG 59.967 45.833 0.00 0.00 0.00 4.44
2578 2925 4.627467 CGAGAAATGAGAAAGATGAACCGT 59.373 41.667 0.00 0.00 0.00 4.83
2612 2959 8.972458 TGCTAATAACTAAGTGGCATAAATCA 57.028 30.769 0.00 0.00 0.00 2.57
2613 2960 8.836413 TGCTAATAACTAAGTGGCATAAATCAC 58.164 33.333 0.00 0.00 0.00 3.06
2614 2961 9.057089 GCTAATAACTAAGTGGCATAAATCACT 57.943 33.333 0.00 0.00 45.06 3.41
2673 3021 6.128634 CGTTAGGTCGAGTTTAAGATTTTGCT 60.129 38.462 0.00 0.00 0.00 3.91
2678 3026 6.183360 GGTCGAGTTTAAGATTTTGCTAGACC 60.183 42.308 0.00 0.00 39.91 3.85
2683 3031 1.739067 AGATTTTGCTAGACCGTGGC 58.261 50.000 0.00 0.00 0.00 5.01
2764 3112 4.058124 CAACAGATCGAGTGAAACAAGGA 58.942 43.478 4.63 0.00 41.43 3.36
2773 3121 2.684881 AGTGAAACAAGGAACACTGCAG 59.315 45.455 13.48 13.48 41.16 4.41
2774 3122 2.423538 GTGAAACAAGGAACACTGCAGT 59.576 45.455 15.25 15.25 36.32 4.40
2822 3170 3.440522 GGTGAAATGGGAAGCTACAGAAC 59.559 47.826 0.00 0.00 0.00 3.01
2824 3172 4.154918 GTGAAATGGGAAGCTACAGAACTG 59.845 45.833 0.00 0.00 0.00 3.16
2825 3173 4.202461 TGAAATGGGAAGCTACAGAACTGT 60.202 41.667 12.10 12.10 46.87 3.55
2883 3256 9.912634 TTTGGAATACTTTCATCTGAAATGTTC 57.087 29.630 5.86 9.72 42.44 3.18
2885 3258 8.733458 TGGAATACTTTCATCTGAAATGTTCTG 58.267 33.333 5.86 0.00 42.44 3.02
2886 3259 8.734386 GGAATACTTTCATCTGAAATGTTCTGT 58.266 33.333 5.86 2.89 42.44 3.41
2891 3264 5.678132 TCATCTGAAATGTTCTGTGTGTG 57.322 39.130 0.00 0.00 0.00 3.82
2915 3289 2.486191 GGAGATTGCTGTGGATGGTAGG 60.486 54.545 0.00 0.00 0.00 3.18
2919 3293 2.180946 TGCTGTGGATGGTAGGAGAT 57.819 50.000 0.00 0.00 0.00 2.75
2936 3310 3.872182 GGAGATAGAAAGAGAAAACCGGC 59.128 47.826 0.00 0.00 0.00 6.13
2955 3329 1.668419 CGGAAGCTAAATCTGTGGGG 58.332 55.000 0.00 0.00 0.00 4.96
2956 3330 1.393603 GGAAGCTAAATCTGTGGGGC 58.606 55.000 0.00 0.00 0.00 5.80
2957 3331 1.064389 GGAAGCTAAATCTGTGGGGCT 60.064 52.381 0.00 0.00 0.00 5.19
2958 3332 2.019984 GAAGCTAAATCTGTGGGGCTG 58.980 52.381 0.00 0.00 0.00 4.85
2959 3333 1.289160 AGCTAAATCTGTGGGGCTGA 58.711 50.000 0.00 0.00 0.00 4.26
2960 3334 1.065126 AGCTAAATCTGTGGGGCTGAC 60.065 52.381 0.00 0.00 0.00 3.51
2961 3335 2.019156 GCTAAATCTGTGGGGCTGACC 61.019 57.143 0.00 0.00 39.11 4.02
2962 3336 1.281867 CTAAATCTGTGGGGCTGACCA 59.718 52.381 0.00 0.00 42.91 4.02
2968 3342 2.609610 TGGGGCTGACCACCTACC 60.610 66.667 0.00 0.00 39.41 3.18
2969 3343 3.408853 GGGGCTGACCACCTACCC 61.409 72.222 0.00 0.00 42.91 3.69
2970 3344 3.408853 GGGCTGACCACCTACCCC 61.409 72.222 0.00 0.00 39.85 4.95
2971 3345 2.609610 GGCTGACCACCTACCCCA 60.610 66.667 0.00 0.00 35.26 4.96
3006 3380 6.676950 CATGTTCTAACTTGGTGCAAACATA 58.323 36.000 7.16 0.00 34.93 2.29
3020 3394 4.021280 TGCAAACATACCTGAAATGCACAT 60.021 37.500 0.00 0.00 35.48 3.21
3037 3411 5.874831 TGCACATGGTGTTACGAAAATATC 58.125 37.500 0.00 0.00 35.75 1.63
3038 3412 5.645929 TGCACATGGTGTTACGAAAATATCT 59.354 36.000 0.00 0.00 35.75 1.98
3041 3415 7.621991 CACATGGTGTTACGAAAATATCTCTC 58.378 38.462 0.00 0.00 0.00 3.20
3042 3416 7.277760 CACATGGTGTTACGAAAATATCTCTCA 59.722 37.037 0.00 0.00 0.00 3.27
3043 3417 7.987458 ACATGGTGTTACGAAAATATCTCTCAT 59.013 33.333 0.00 0.00 0.00 2.90
3044 3418 7.770801 TGGTGTTACGAAAATATCTCTCATG 57.229 36.000 0.00 0.00 0.00 3.07
3045 3419 7.327975 TGGTGTTACGAAAATATCTCTCATGT 58.672 34.615 0.00 0.00 0.00 3.21
3046 3420 8.471609 TGGTGTTACGAAAATATCTCTCATGTA 58.528 33.333 0.00 0.00 0.00 2.29
3047 3421 8.969267 GGTGTTACGAAAATATCTCTCATGTAG 58.031 37.037 0.00 0.00 0.00 2.74
3070 3614 7.621428 AGTCATGTTGATCTCCTTATTTGTG 57.379 36.000 0.00 0.00 0.00 3.33
3089 3633 4.578871 TGTGATGGAAGGTGAATGTACAG 58.421 43.478 0.33 0.00 0.00 2.74
3104 3648 2.238646 TGTACAGGGCAGTTATCTTGGG 59.761 50.000 0.00 0.00 0.00 4.12
3114 3658 5.163612 GGCAGTTATCTTGGGAGTCATTTTC 60.164 44.000 0.00 0.00 0.00 2.29
3144 3691 6.733807 TCTTAGGTTCCTCCCAAATTCTCTTA 59.266 38.462 0.00 0.00 36.75 2.10
3179 3754 7.750903 GCTTGATGTTATTAAAGTCGCTTTCTT 59.249 33.333 7.89 1.79 35.21 2.52
3217 3793 7.411486 TCTAAGATTCTTAGTCCAGTCCAAG 57.589 40.000 25.49 5.90 0.00 3.61
3219 3795 8.114102 TCTAAGATTCTTAGTCCAGTCCAAGTA 58.886 37.037 25.49 6.10 0.00 2.24
3221 3797 7.354751 AGATTCTTAGTCCAGTCCAAGTATC 57.645 40.000 0.00 0.00 0.00 2.24
3267 3844 8.986477 ATAAATTTCACATACAGGTTTTCAGC 57.014 30.769 0.00 0.00 0.00 4.26
3302 3879 9.950680 TCTTCATCATAACACTTTTGAAGAAAC 57.049 29.630 9.93 0.00 43.45 2.78
3413 3990 3.236896 TCCTCCGTTACAGAAGAAAGGT 58.763 45.455 0.00 0.00 0.00 3.50
3414 3991 3.006537 TCCTCCGTTACAGAAGAAAGGTG 59.993 47.826 0.00 0.00 0.00 4.00
3462 4039 0.034198 TCCAGAATTTCGACGCCACA 59.966 50.000 0.00 0.00 0.00 4.17
3478 4055 1.071471 ACACCTGTGGAGAAAGCCG 59.929 57.895 1.91 0.00 34.19 5.52
3484 4061 3.936203 TGGAGAAAGCCGCGTGGT 61.936 61.111 17.91 0.02 37.67 4.16
3485 4062 2.263540 GGAGAAAGCCGCGTGGTA 59.736 61.111 17.91 0.00 37.67 3.25
3522 4099 0.593128 AAGCGCACACAGGATTTGTC 59.407 50.000 11.47 0.00 38.16 3.18
3532 4109 2.428890 ACAGGATTTGTCTCTAGCCTCG 59.571 50.000 0.00 0.00 33.87 4.63
3573 4150 1.764723 TGCTCCATGTCCATAGTCCTG 59.235 52.381 0.00 0.00 0.00 3.86
3608 4185 4.702131 GGTTTCTTGATGCAAGTACTGGAT 59.298 41.667 0.00 0.12 41.66 3.41
3611 4188 5.426689 TCTTGATGCAAGTACTGGATTCT 57.573 39.130 0.00 0.00 41.66 2.40
3624 4201 3.703556 ACTGGATTCTCGAGACATGATGT 59.296 43.478 16.36 0.00 0.00 3.06
3625 4202 4.049869 CTGGATTCTCGAGACATGATGTG 58.950 47.826 16.36 0.00 0.00 3.21
3656 4233 4.450419 ACTTCAAAAGTCAGATTGCTCTCG 59.550 41.667 0.00 0.00 37.02 4.04
3711 4288 2.450609 TCAGAGGAAACCAAGTACGC 57.549 50.000 0.00 0.00 0.00 4.42
3720 4297 4.496175 GGAAACCAAGTACGCGAAAAAGAA 60.496 41.667 15.93 0.00 0.00 2.52
3745 4322 1.481772 AGTTGCATGCTTGGTGTTTGT 59.518 42.857 20.33 0.00 0.00 2.83
3770 4348 9.949174 GTCAATGTTTTTGGCAATCTTTTAAAT 57.051 25.926 0.00 0.00 0.00 1.40
3808 4433 1.032014 GCTTTTTGTCCACAGGAGCA 58.968 50.000 0.00 0.00 29.39 4.26
3827 4452 2.297701 CACTGTTGTGCTACCCTTTGT 58.702 47.619 0.00 0.00 37.38 2.83
3903 4528 2.506444 TGAACATCTCACAAGCATGCA 58.494 42.857 21.98 0.00 0.00 3.96
3908 4533 1.746470 TCTCACAAGCATGCAGATGG 58.254 50.000 21.98 6.50 0.00 3.51
3998 4624 0.894141 CATGAAATGGAAACGCCCCA 59.106 50.000 0.00 0.00 41.79 4.96
4062 4696 3.350219 GGATACTCAACAAGGAGCCAA 57.650 47.619 0.00 0.00 44.61 4.52
4091 4725 0.179045 CATTCGGGATGACCAGGGTC 60.179 60.000 11.56 11.56 44.77 4.46
4106 6293 3.091545 CAGGGTCAGGTTATTGCACAAT 58.908 45.455 0.94 0.94 34.93 2.71
4107 6294 3.129287 CAGGGTCAGGTTATTGCACAATC 59.871 47.826 0.00 0.00 32.50 2.67
4116 6303 4.142160 GGTTATTGCACAATCTTTCCCTCC 60.142 45.833 0.00 0.00 32.50 4.30
4127 6314 2.497675 TCTTTCCCTCCAGACTTCATCG 59.502 50.000 0.00 0.00 0.00 3.84
4129 6316 0.041238 TCCCTCCAGACTTCATCGGT 59.959 55.000 0.00 0.00 0.00 4.69
4137 6324 0.247736 GACTTCATCGGTGAGCCTGT 59.752 55.000 0.00 0.00 35.39 4.00
4138 6325 0.247736 ACTTCATCGGTGAGCCTGTC 59.752 55.000 0.00 0.00 35.39 3.51
4140 6327 2.202797 CATCGGTGAGCCTGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
4143 6330 3.991051 CGGTGAGCCTGTCGGTGT 61.991 66.667 0.00 0.00 0.00 4.16
4146 6333 1.533469 GGTGAGCCTGTCGGTGTACT 61.533 60.000 0.00 0.00 0.00 2.73
4153 6340 1.202582 CCTGTCGGTGTACTTCTCCTG 59.797 57.143 0.00 0.00 0.00 3.86
4155 6342 1.611977 TGTCGGTGTACTTCTCCTGTG 59.388 52.381 0.00 0.00 0.00 3.66
4156 6343 1.067776 GTCGGTGTACTTCTCCTGTGG 60.068 57.143 0.00 0.00 0.00 4.17
4159 6346 1.338200 GGTGTACTTCTCCTGTGGCTG 60.338 57.143 0.00 0.00 0.00 4.85
4160 6347 0.321671 TGTACTTCTCCTGTGGCTGC 59.678 55.000 0.00 0.00 0.00 5.25
4161 6348 0.391793 GTACTTCTCCTGTGGCTGCC 60.392 60.000 12.87 12.87 0.00 4.85
4162 6349 1.888436 TACTTCTCCTGTGGCTGCCG 61.888 60.000 14.98 0.00 0.00 5.69
4163 6350 4.704833 TTCTCCTGTGGCTGCCGC 62.705 66.667 24.80 24.80 34.12 6.53
4165 6352 4.711949 CTCCTGTGGCTGCCGCTT 62.712 66.667 30.17 0.00 34.70 4.68
4166 6353 4.704833 TCCTGTGGCTGCCGCTTC 62.705 66.667 30.17 13.62 34.70 3.86
4183 6370 2.202905 CGGCGGCCGGTGTAATAA 60.203 61.111 32.80 0.00 44.15 1.40
4184 6371 2.527867 CGGCGGCCGGTGTAATAAC 61.528 63.158 32.80 6.13 44.15 1.89
4185 6372 2.182181 GGCGGCCGGTGTAATAACC 61.182 63.158 29.38 12.40 36.82 2.85
4186 6373 1.153309 GCGGCCGGTGTAATAACCT 60.153 57.895 29.38 0.00 38.14 3.50
4187 6374 0.745486 GCGGCCGGTGTAATAACCTT 60.745 55.000 29.38 0.00 38.14 3.50
4188 6375 1.741528 CGGCCGGTGTAATAACCTTT 58.258 50.000 20.10 0.00 38.14 3.11
4189 6376 1.667212 CGGCCGGTGTAATAACCTTTC 59.333 52.381 20.10 0.00 38.14 2.62
4190 6377 2.019249 GGCCGGTGTAATAACCTTTCC 58.981 52.381 1.90 0.00 38.14 3.13
4191 6378 2.019249 GCCGGTGTAATAACCTTTCCC 58.981 52.381 1.90 0.00 38.14 3.97
4192 6379 2.356432 GCCGGTGTAATAACCTTTCCCT 60.356 50.000 1.90 0.00 38.14 4.20
4193 6380 3.874977 GCCGGTGTAATAACCTTTCCCTT 60.875 47.826 1.90 0.00 38.14 3.95
4194 6381 3.943381 CCGGTGTAATAACCTTTCCCTTC 59.057 47.826 0.00 0.00 38.14 3.46
4195 6382 4.566070 CCGGTGTAATAACCTTTCCCTTCA 60.566 45.833 0.00 0.00 38.14 3.02
4196 6383 4.634443 CGGTGTAATAACCTTTCCCTTCAG 59.366 45.833 0.00 0.00 38.14 3.02
4197 6384 5.570034 CGGTGTAATAACCTTTCCCTTCAGA 60.570 44.000 0.00 0.00 38.14 3.27
4198 6385 5.646793 GGTGTAATAACCTTTCCCTTCAGAC 59.353 44.000 0.00 0.00 37.24 3.51
4199 6386 6.473758 GTGTAATAACCTTTCCCTTCAGACT 58.526 40.000 0.00 0.00 0.00 3.24
4200 6387 6.940867 GTGTAATAACCTTTCCCTTCAGACTT 59.059 38.462 0.00 0.00 0.00 3.01
4201 6388 7.119407 GTGTAATAACCTTTCCCTTCAGACTTC 59.881 40.741 0.00 0.00 0.00 3.01
4202 6389 5.843019 ATAACCTTTCCCTTCAGACTTCA 57.157 39.130 0.00 0.00 0.00 3.02
4203 6390 4.731313 AACCTTTCCCTTCAGACTTCAT 57.269 40.909 0.00 0.00 0.00 2.57
4204 6391 4.293662 ACCTTTCCCTTCAGACTTCATC 57.706 45.455 0.00 0.00 0.00 2.92
4205 6392 3.265791 CCTTTCCCTTCAGACTTCATCG 58.734 50.000 0.00 0.00 0.00 3.84
4206 6393 3.265791 CTTTCCCTTCAGACTTCATCGG 58.734 50.000 0.00 0.00 0.00 4.18
4207 6394 1.938585 TCCCTTCAGACTTCATCGGT 58.061 50.000 0.00 0.00 0.00 4.69
4208 6395 1.550524 TCCCTTCAGACTTCATCGGTG 59.449 52.381 0.00 0.00 0.00 4.94
4209 6396 1.550524 CCCTTCAGACTTCATCGGTGA 59.449 52.381 0.00 0.00 0.00 4.02
4210 6397 2.417924 CCCTTCAGACTTCATCGGTGAG 60.418 54.545 0.00 0.00 35.39 3.51
4211 6398 2.266554 CTTCAGACTTCATCGGTGAGC 58.733 52.381 0.00 0.00 35.39 4.26
4212 6399 0.532573 TCAGACTTCATCGGTGAGCC 59.467 55.000 0.00 0.00 35.39 4.70
4213 6400 0.534412 CAGACTTCATCGGTGAGCCT 59.466 55.000 0.00 0.00 35.39 4.58
4214 6401 0.534412 AGACTTCATCGGTGAGCCTG 59.466 55.000 0.00 0.00 35.39 4.85
4215 6402 0.247736 GACTTCATCGGTGAGCCTGT 59.752 55.000 0.00 0.00 35.39 4.00
4216 6403 0.247736 ACTTCATCGGTGAGCCTGTC 59.752 55.000 0.00 0.00 35.39 3.51
4217 6404 0.803768 CTTCATCGGTGAGCCTGTCG 60.804 60.000 0.00 0.00 35.39 4.35
4218 6405 1.248101 TTCATCGGTGAGCCTGTCGA 61.248 55.000 0.00 0.00 35.39 4.20
4219 6406 1.037579 TCATCGGTGAGCCTGTCGAT 61.038 55.000 0.00 0.00 42.14 3.59
4220 6407 1.439228 ATCGGTGAGCCTGTCGATG 59.561 57.895 0.00 0.00 40.27 3.84
4221 6408 1.323271 ATCGGTGAGCCTGTCGATGT 61.323 55.000 0.00 0.00 40.27 3.06
4222 6409 0.678684 TCGGTGAGCCTGTCGATGTA 60.679 55.000 0.00 0.00 0.00 2.29
4223 6410 0.525668 CGGTGAGCCTGTCGATGTAC 60.526 60.000 0.00 0.00 0.00 2.90
4224 6411 0.818296 GGTGAGCCTGTCGATGTACT 59.182 55.000 0.00 0.00 0.00 2.73
4225 6412 1.204941 GGTGAGCCTGTCGATGTACTT 59.795 52.381 0.00 0.00 0.00 2.24
4226 6413 2.531206 GTGAGCCTGTCGATGTACTTC 58.469 52.381 0.00 0.00 0.00 3.01
4227 6414 2.164624 GTGAGCCTGTCGATGTACTTCT 59.835 50.000 7.13 0.00 0.00 2.85
4228 6415 2.423892 TGAGCCTGTCGATGTACTTCTC 59.576 50.000 7.13 1.74 0.00 2.87
4229 6416 1.751924 AGCCTGTCGATGTACTTCTCC 59.248 52.381 7.13 0.00 0.00 3.71
4230 6417 1.751924 GCCTGTCGATGTACTTCTCCT 59.248 52.381 7.13 0.00 0.00 3.69
4231 6418 2.950309 GCCTGTCGATGTACTTCTCCTA 59.050 50.000 7.13 0.00 0.00 2.94
4232 6419 3.570550 GCCTGTCGATGTACTTCTCCTAT 59.429 47.826 7.13 0.00 0.00 2.57
4233 6420 4.557695 GCCTGTCGATGTACTTCTCCTATG 60.558 50.000 7.13 0.00 0.00 2.23
4234 6421 4.022762 CCTGTCGATGTACTTCTCCTATGG 60.023 50.000 7.13 0.00 0.00 2.74
4235 6422 3.318275 TGTCGATGTACTTCTCCTATGGC 59.682 47.826 7.13 0.00 0.00 4.40
4236 6423 3.570550 GTCGATGTACTTCTCCTATGGCT 59.429 47.826 7.13 0.00 0.00 4.75
4237 6424 3.570125 TCGATGTACTTCTCCTATGGCTG 59.430 47.826 7.13 0.00 0.00 4.85
4238 6425 3.658709 GATGTACTTCTCCTATGGCTGC 58.341 50.000 1.60 0.00 0.00 5.25
4239 6426 1.762957 TGTACTTCTCCTATGGCTGCC 59.237 52.381 12.87 12.87 0.00 4.85
4244 6431 1.153086 CTCCTATGGCTGCCGCTTT 60.153 57.895 14.98 1.30 36.09 3.51
4301 6518 0.605319 TTTAGTCCTTGCAGGTGCGG 60.605 55.000 0.00 0.00 45.83 5.69
4302 6519 3.605749 TAGTCCTTGCAGGTGCGGC 62.606 63.158 0.00 0.00 45.83 6.53
4304 6521 4.704833 TCCTTGCAGGTGCGGCTC 62.705 66.667 0.00 0.00 45.83 4.70
4305 6522 4.711949 CCTTGCAGGTGCGGCTCT 62.712 66.667 0.00 0.00 45.83 4.09
4306 6523 2.670934 CTTGCAGGTGCGGCTCTT 60.671 61.111 0.00 0.00 45.83 2.85
4307 6524 1.375908 CTTGCAGGTGCGGCTCTTA 60.376 57.895 0.00 0.00 45.83 2.10
4308 6525 1.364626 CTTGCAGGTGCGGCTCTTAG 61.365 60.000 0.00 0.00 45.83 2.18
4309 6526 2.512515 GCAGGTGCGGCTCTTAGG 60.513 66.667 0.00 0.00 0.00 2.69
4310 6527 2.512515 CAGGTGCGGCTCTTAGGC 60.513 66.667 0.00 0.00 37.44 3.93
4349 6566 3.117888 TCTTCAAGTTTGTCTTCTGGGCT 60.118 43.478 0.00 0.00 33.63 5.19
4362 6579 2.081425 CTGGGCTTCGATCCTCCTCG 62.081 65.000 4.51 0.00 39.99 4.63
4363 6580 2.128507 GGGCTTCGATCCTCCTCGT 61.129 63.158 4.51 0.00 39.62 4.18
4395 6613 2.873472 CGAACGTAGTAGATGGAGCTCT 59.127 50.000 14.64 0.00 45.00 4.09
4396 6614 3.059461 CGAACGTAGTAGATGGAGCTCTC 60.059 52.174 14.64 4.08 45.00 3.20
4398 6616 1.801771 CGTAGTAGATGGAGCTCTCGG 59.198 57.143 14.64 0.00 0.00 4.63
4399 6617 1.538075 GTAGTAGATGGAGCTCTCGGC 59.462 57.143 14.64 3.08 42.19 5.54
4412 6630 1.405821 CTCTCGGCGTAGATTCCTGTT 59.594 52.381 6.85 0.00 0.00 3.16
4437 6656 1.536907 TTGGGGCGGTGAGGTTAGA 60.537 57.895 0.00 0.00 0.00 2.10
4441 6660 0.108281 GGGCGGTGAGGTTAGAGTTC 60.108 60.000 0.00 0.00 0.00 3.01
4453 6672 3.512680 GTTAGAGTTCCTCGTCATGTGG 58.487 50.000 0.00 0.00 35.36 4.17
4469 6688 0.517316 GTGGCGAGATTTGGTGTCAC 59.483 55.000 0.00 0.00 0.00 3.67
4470 6689 0.948623 TGGCGAGATTTGGTGTCACG 60.949 55.000 0.00 0.00 33.72 4.35
4471 6690 0.949105 GGCGAGATTTGGTGTCACGT 60.949 55.000 0.00 0.00 33.25 4.49
4472 6691 0.438830 GCGAGATTTGGTGTCACGTC 59.561 55.000 0.00 0.00 33.25 4.34
4473 6692 1.778334 CGAGATTTGGTGTCACGTCA 58.222 50.000 0.00 0.00 0.00 4.35
4474 6693 2.337583 CGAGATTTGGTGTCACGTCAT 58.662 47.619 0.00 0.00 0.00 3.06
4491 6710 4.687948 ACGTCATGTGCTTCAGATATATGC 59.312 41.667 0.00 0.00 0.00 3.14
4503 6722 8.025445 GCTTCAGATATATGCAAGGGTTAAATG 58.975 37.037 0.00 0.00 0.00 2.32
4513 6732 1.004595 GGGTTAAATGGCGACGACTC 58.995 55.000 0.65 0.00 0.00 3.36
4525 6744 4.821589 CGACTCCGGCTTCAGGGC 62.822 72.222 0.00 0.00 37.12 5.19
4540 6759 2.824489 GGCGCTGGTCCTTAAGGC 60.824 66.667 17.32 11.59 34.44 4.35
4542 6761 2.668632 CGCTGGTCCTTAAGGCCA 59.331 61.111 26.31 26.31 38.46 5.36
4549 6768 1.302192 TCCTTAAGGCCACGTGCAC 60.302 57.895 17.32 6.82 43.89 4.57
4558 6777 1.853319 CCACGTGCACGAAGACTTC 59.147 57.895 42.94 5.03 43.02 3.01
4561 6780 0.597637 ACGTGCACGAAGACTTCCTG 60.598 55.000 42.94 12.22 43.02 3.86
4573 6792 2.632996 AGACTTCCTGGTTGTCATCGAA 59.367 45.455 18.38 0.00 33.56 3.71
4576 6795 3.815401 ACTTCCTGGTTGTCATCGAAAAG 59.185 43.478 0.00 0.00 0.00 2.27
4577 6796 3.762407 TCCTGGTTGTCATCGAAAAGA 57.238 42.857 0.00 0.00 0.00 2.52
4582 6801 5.391310 CCTGGTTGTCATCGAAAAGATCAAG 60.391 44.000 0.00 0.00 37.52 3.02
4591 6810 1.747924 GAAAAGATCAAGCAGGCTCCC 59.252 52.381 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.005156 GAGCCAGGGAGATGCGATC 60.005 63.158 0.00 0.00 0.00 3.69
29 30 0.106918 GAAGAGGCCGAGAGAGGAGA 60.107 60.000 0.00 0.00 0.00 3.71
30 31 1.106944 GGAAGAGGCCGAGAGAGGAG 61.107 65.000 0.00 0.00 0.00 3.69
31 32 1.076632 GGAAGAGGCCGAGAGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
32 33 2.131067 GGGAAGAGGCCGAGAGAGG 61.131 68.421 0.00 0.00 0.00 3.69
33 34 2.131067 GGGGAAGAGGCCGAGAGAG 61.131 68.421 0.00 0.00 0.00 3.20
175 178 2.434884 CCTGGTGCGTCGCTGATT 60.435 61.111 19.50 0.00 0.00 2.57
264 267 3.398353 CTCGTCGTTCGCTCTCCCC 62.398 68.421 0.00 0.00 39.67 4.81
328 337 5.468072 CACAAGCATATAAGCGGAAGAAGAT 59.532 40.000 0.00 0.00 40.15 2.40
413 422 8.547173 TGGGAAAAATAATGCAATCCAATTACT 58.453 29.630 0.00 0.00 0.00 2.24
430 439 5.221682 TGTGTCTGCATTTGATGGGAAAAAT 60.222 36.000 0.00 0.00 0.00 1.82
438 447 1.466866 CGGCTGTGTCTGCATTTGATG 60.467 52.381 0.00 0.00 0.00 3.07
441 450 1.135972 GTACGGCTGTGTCTGCATTTG 60.136 52.381 8.92 0.00 0.00 2.32
459 468 7.225011 ACAGTATCTACATCTCAGAATCCGTA 58.775 38.462 0.00 0.00 0.00 4.02
489 502 2.891580 TCTACTATGGCGGAATCAGGAC 59.108 50.000 0.00 0.00 0.00 3.85
572 585 1.076350 ACTAGGAGAGCACCTCACAGT 59.924 52.381 8.16 7.08 43.76 3.55
610 623 2.467566 TTTGGAACGGAAGGAGTAGC 57.532 50.000 0.00 0.00 0.00 3.58
613 626 4.760204 CACTTATTTTGGAACGGAAGGAGT 59.240 41.667 0.00 0.00 0.00 3.85
620 633 3.805823 CACGACACTTATTTTGGAACGG 58.194 45.455 0.00 0.00 0.00 4.44
625 638 3.896648 ACAGCACGACACTTATTTTGG 57.103 42.857 0.00 0.00 0.00 3.28
637 650 5.743026 TCAAATTTGAACTAACAGCACGA 57.257 34.783 18.45 0.00 33.55 4.35
654 667 6.628919 AAGTGCCGTAGTTTTAGTTCAAAT 57.371 33.333 0.00 0.00 0.00 2.32
655 668 7.733402 ATAAGTGCCGTAGTTTTAGTTCAAA 57.267 32.000 0.00 0.00 0.00 2.69
656 669 7.733402 AATAAGTGCCGTAGTTTTAGTTCAA 57.267 32.000 0.00 0.00 0.00 2.69
657 670 7.733402 AAATAAGTGCCGTAGTTTTAGTTCA 57.267 32.000 0.00 0.00 0.00 3.18
658 671 9.750882 CTAAAATAAGTGCCGTAGTTTTAGTTC 57.249 33.333 0.00 0.00 35.77 3.01
659 672 9.492973 TCTAAAATAAGTGCCGTAGTTTTAGTT 57.507 29.630 14.74 0.00 38.90 2.24
660 673 9.492973 TTCTAAAATAAGTGCCGTAGTTTTAGT 57.507 29.630 14.74 0.00 38.90 2.24
661 674 9.750882 GTTCTAAAATAAGTGCCGTAGTTTTAG 57.249 33.333 11.44 11.44 39.05 1.85
662 675 8.434661 CGTTCTAAAATAAGTGCCGTAGTTTTA 58.565 33.333 0.87 0.00 0.00 1.52
663 676 7.293018 CGTTCTAAAATAAGTGCCGTAGTTTT 58.707 34.615 0.87 0.00 0.00 2.43
664 677 6.128472 CCGTTCTAAAATAAGTGCCGTAGTTT 60.128 38.462 0.00 0.00 0.00 2.66
665 678 5.349543 CCGTTCTAAAATAAGTGCCGTAGTT 59.650 40.000 0.00 0.00 0.00 2.24
666 679 4.866486 CCGTTCTAAAATAAGTGCCGTAGT 59.134 41.667 0.00 0.00 0.00 2.73
667 680 5.104374 TCCGTTCTAAAATAAGTGCCGTAG 58.896 41.667 0.00 0.00 0.00 3.51
668 681 5.070770 TCCGTTCTAAAATAAGTGCCGTA 57.929 39.130 0.00 0.00 0.00 4.02
669 682 3.929094 TCCGTTCTAAAATAAGTGCCGT 58.071 40.909 0.00 0.00 0.00 5.68
670 683 3.308866 CCTCCGTTCTAAAATAAGTGCCG 59.691 47.826 0.00 0.00 0.00 5.69
671 684 3.626217 CCCTCCGTTCTAAAATAAGTGCC 59.374 47.826 0.00 0.00 0.00 5.01
672 685 4.510571 TCCCTCCGTTCTAAAATAAGTGC 58.489 43.478 0.00 0.00 0.00 4.40
673 686 5.731591 ACTCCCTCCGTTCTAAAATAAGTG 58.268 41.667 0.00 0.00 0.00 3.16
674 687 7.672122 ATACTCCCTCCGTTCTAAAATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
675 688 8.827677 CAAATACTCCCTCCGTTCTAAAATAAG 58.172 37.037 0.00 0.00 0.00 1.73
676 689 8.323567 ACAAATACTCCCTCCGTTCTAAAATAA 58.676 33.333 0.00 0.00 0.00 1.40
677 690 7.767198 CACAAATACTCCCTCCGTTCTAAAATA 59.233 37.037 0.00 0.00 0.00 1.40
678 691 6.598064 CACAAATACTCCCTCCGTTCTAAAAT 59.402 38.462 0.00 0.00 0.00 1.82
679 692 5.935789 CACAAATACTCCCTCCGTTCTAAAA 59.064 40.000 0.00 0.00 0.00 1.52
680 693 5.246656 TCACAAATACTCCCTCCGTTCTAAA 59.753 40.000 0.00 0.00 0.00 1.85
681 694 4.773674 TCACAAATACTCCCTCCGTTCTAA 59.226 41.667 0.00 0.00 0.00 2.10
682 695 4.346730 TCACAAATACTCCCTCCGTTCTA 58.653 43.478 0.00 0.00 0.00 2.10
683 696 3.170717 TCACAAATACTCCCTCCGTTCT 58.829 45.455 0.00 0.00 0.00 3.01
684 697 3.604875 TCACAAATACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
685 698 3.263425 ACATCACAAATACTCCCTCCGTT 59.737 43.478 0.00 0.00 0.00 4.44
686 699 2.838202 ACATCACAAATACTCCCTCCGT 59.162 45.455 0.00 0.00 0.00 4.69
687 700 3.543680 ACATCACAAATACTCCCTCCG 57.456 47.619 0.00 0.00 0.00 4.63
688 701 5.615925 ACTACATCACAAATACTCCCTCC 57.384 43.478 0.00 0.00 0.00 4.30
689 702 5.817816 CCAACTACATCACAAATACTCCCTC 59.182 44.000 0.00 0.00 0.00 4.30
690 703 5.250774 ACCAACTACATCACAAATACTCCCT 59.749 40.000 0.00 0.00 0.00 4.20
691 704 5.497474 ACCAACTACATCACAAATACTCCC 58.503 41.667 0.00 0.00 0.00 4.30
692 705 8.732746 AATACCAACTACATCACAAATACTCC 57.267 34.615 0.00 0.00 0.00 3.85
693 706 9.988350 CAAATACCAACTACATCACAAATACTC 57.012 33.333 0.00 0.00 0.00 2.59
694 707 8.458843 GCAAATACCAACTACATCACAAATACT 58.541 33.333 0.00 0.00 0.00 2.12
695 708 8.458843 AGCAAATACCAACTACATCACAAATAC 58.541 33.333 0.00 0.00 0.00 1.89
696 709 8.574251 AGCAAATACCAACTACATCACAAATA 57.426 30.769 0.00 0.00 0.00 1.40
697 710 7.466746 AGCAAATACCAACTACATCACAAAT 57.533 32.000 0.00 0.00 0.00 2.32
698 711 6.892658 AGCAAATACCAACTACATCACAAA 57.107 33.333 0.00 0.00 0.00 2.83
699 712 7.165485 AGTAGCAAATACCAACTACATCACAA 58.835 34.615 0.00 0.00 37.94 3.33
700 713 6.707290 AGTAGCAAATACCAACTACATCACA 58.293 36.000 0.00 0.00 37.94 3.58
701 714 6.258068 GGAGTAGCAAATACCAACTACATCAC 59.742 42.308 0.00 0.00 37.94 3.06
702 715 6.346096 GGAGTAGCAAATACCAACTACATCA 58.654 40.000 0.00 0.00 37.94 3.07
703 716 5.758784 GGGAGTAGCAAATACCAACTACATC 59.241 44.000 0.00 0.00 37.94 3.06
704 717 5.428783 AGGGAGTAGCAAATACCAACTACAT 59.571 40.000 0.00 0.00 37.94 2.29
705 718 4.781087 AGGGAGTAGCAAATACCAACTACA 59.219 41.667 0.00 0.00 37.94 2.74
720 733 1.776662 TGATGGAACGGAGGGAGTAG 58.223 55.000 0.00 0.00 0.00 2.57
724 737 3.458118 ACAATAATGATGGAACGGAGGGA 59.542 43.478 0.00 0.00 0.00 4.20
738 751 7.073265 ACCGAACTAAAACAACGACAATAATG 58.927 34.615 0.00 0.00 0.00 1.90
761 774 2.352519 GGTGTACAGAGTTCGAGGAACC 60.353 54.545 0.00 0.00 42.85 3.62
809 823 5.359860 GGTACCAGCAGTATAAGGCAAAAAT 59.640 40.000 7.15 0.00 32.28 1.82
849 873 7.124573 TCTGGGAATAACATATATCCATCCG 57.875 40.000 0.00 0.00 33.48 4.18
864 888 8.748412 CCAATAGTGAAACAAATTCTGGGAATA 58.252 33.333 0.00 0.00 41.43 1.75
914 946 6.481644 AGAGAGAATAATTTTGATCACTCGCC 59.518 38.462 0.00 0.00 35.52 5.54
925 957 9.474920 CTATCTGAGCGAAGAGAGAATAATTTT 57.525 33.333 7.35 0.00 37.66 1.82
953 985 3.645687 ACCTGGGCAAAGAAAAATTAGCA 59.354 39.130 0.00 0.00 0.00 3.49
957 989 2.439135 AGCACCTGGGCAAAGAAAAATT 59.561 40.909 9.36 0.00 35.83 1.82
1070 1102 3.197790 CGGCAGCAATGGAGGTCG 61.198 66.667 0.00 0.00 0.00 4.79
1114 1146 0.179004 AACGTCATTCAACCCCTGCA 60.179 50.000 0.00 0.00 0.00 4.41
1118 1150 1.604438 GGCAAAACGTCATTCAACCCC 60.604 52.381 0.00 0.00 0.00 4.95
1128 1160 4.946784 AGAATCACATAGGCAAAACGTC 57.053 40.909 0.00 0.00 0.00 4.34
1130 1162 4.328983 ACGTAGAATCACATAGGCAAAACG 59.671 41.667 0.00 0.00 0.00 3.60
1131 1163 5.447279 CCACGTAGAATCACATAGGCAAAAC 60.447 44.000 0.00 0.00 0.00 2.43
1175 1210 6.749118 CCTAGAACTGAATTTAGCAATGCAAC 59.251 38.462 8.35 0.00 26.25 4.17
1186 1221 5.505181 TCCTGCTTCCTAGAACTGAATTT 57.495 39.130 0.00 0.00 0.00 1.82
1255 1531 4.812626 ACAGTTAACTACCACCAGAAAACG 59.187 41.667 8.04 0.00 0.00 3.60
1281 1557 4.264253 TGGTGGCTCTTGTTAATCATCAG 58.736 43.478 0.00 0.00 0.00 2.90
1302 1578 8.773404 AAAGTAGCACCTAAGTAGTTAACATG 57.227 34.615 8.61 0.00 0.00 3.21
1503 1788 4.674623 CGAATGAGGTACGTCAGCTAAGTT 60.675 45.833 21.56 11.09 34.30 2.66
1521 1806 3.548587 CTTTGCACAAGTCAGACGAATG 58.451 45.455 0.00 0.00 0.00 2.67
1526 1811 2.565841 AGTCCTTTGCACAAGTCAGAC 58.434 47.619 0.00 0.00 0.00 3.51
1645 1930 7.063426 GGAATTTTACCAAAGTATCTTTGCTGC 59.937 37.037 14.40 0.00 0.00 5.25
1853 2139 6.962678 CCAAAAACAGCAACATCAAGAAAAAG 59.037 34.615 0.00 0.00 0.00 2.27
1884 2170 2.224793 GCTGAGGGTAGTTCCAGGTTTT 60.225 50.000 0.00 0.00 38.11 2.43
1897 2183 1.484444 GGTTGGACAGAGCTGAGGGT 61.484 60.000 4.21 0.00 0.00 4.34
2107 2409 2.031157 CGTGTGACCCATTTCCTCAAAC 60.031 50.000 0.00 0.00 0.00 2.93
2149 2451 4.382291 TGCACATAAACACTAGACCGTTT 58.618 39.130 0.00 5.89 38.76 3.60
2194 2496 7.494952 GGCCTAGAATAGTTATTTCGTCTGTTT 59.505 37.037 0.00 0.00 36.82 2.83
2227 2561 3.624326 GCATTATGTGCGCCAAATAGA 57.376 42.857 4.18 0.00 45.23 1.98
2263 2607 2.584835 TTAGGTGCCTGTTCTGCAAT 57.415 45.000 0.12 0.00 41.06 3.56
2287 2631 8.663209 AGGTATTGCTGATCTCTACTTGATAT 57.337 34.615 0.00 0.00 0.00 1.63
2389 2735 1.048724 TCCCCTCAATAGCTGGTCCG 61.049 60.000 0.00 0.00 0.00 4.79
2405 2751 3.398318 AACCTTTTATGGTGGGATCCC 57.602 47.619 25.22 25.22 40.73 3.85
2406 2752 3.704566 GGAAACCTTTTATGGTGGGATCC 59.295 47.826 1.92 1.92 40.73 3.36
2407 2753 4.349365 TGGAAACCTTTTATGGTGGGATC 58.651 43.478 0.00 0.00 40.73 3.36
2441 2787 5.287274 CACTATTCACTAGCTTCAGTGTTCG 59.713 44.000 14.77 6.52 45.11 3.95
2447 2793 6.094742 TCTCTCACACTATTCACTAGCTTCAG 59.905 42.308 0.00 0.00 0.00 3.02
2492 2838 9.921637 TCCGCAATTTAGTTTATCAGAAATTTT 57.078 25.926 0.00 0.00 30.91 1.82
2512 2858 7.593273 CACAGTTGAGTAATTATTTTTCCGCAA 59.407 33.333 0.00 0.00 0.00 4.85
2528 2875 5.730550 TCTTGTTTGACTACACAGTTGAGT 58.269 37.500 0.00 0.00 34.21 3.41
2571 2918 2.768253 AGCATTCATCTCACGGTTCA 57.232 45.000 0.00 0.00 0.00 3.18
2577 2924 8.768955 CCACTTAGTTATTAGCATTCATCTCAC 58.231 37.037 0.00 0.00 0.00 3.51
2578 2925 7.442364 GCCACTTAGTTATTAGCATTCATCTCA 59.558 37.037 0.00 0.00 0.00 3.27
2639 2987 8.984891 TTAAACTCGACCTAACGATGAAATAA 57.015 30.769 0.00 0.00 41.39 1.40
2640 2988 8.461222 TCTTAAACTCGACCTAACGATGAAATA 58.539 33.333 0.00 0.00 41.39 1.40
2641 2989 7.318141 TCTTAAACTCGACCTAACGATGAAAT 58.682 34.615 0.00 0.00 41.39 2.17
2673 3021 2.363795 CCAGGGAGCCACGGTCTA 60.364 66.667 0.00 0.00 0.00 2.59
2678 3026 1.838073 AAGGTAACCAGGGAGCCACG 61.838 60.000 0.00 0.00 37.17 4.94
2683 3031 1.490910 GGGATCAAGGTAACCAGGGAG 59.509 57.143 0.00 0.00 37.17 4.30
2773 3121 0.814457 TTGCCTGACCACAAACACAC 59.186 50.000 0.00 0.00 0.00 3.82
2774 3122 0.814457 GTTGCCTGACCACAAACACA 59.186 50.000 0.00 0.00 0.00 3.72
2779 3127 2.884012 CAACTATGTTGCCTGACCACAA 59.116 45.455 0.00 0.00 0.00 3.33
2883 3256 2.031420 CAGCAATCTCCAACACACACAG 60.031 50.000 0.00 0.00 0.00 3.66
2885 3258 1.949525 ACAGCAATCTCCAACACACAC 59.050 47.619 0.00 0.00 0.00 3.82
2886 3259 1.948834 CACAGCAATCTCCAACACACA 59.051 47.619 0.00 0.00 0.00 3.72
2891 3264 1.747355 CCATCCACAGCAATCTCCAAC 59.253 52.381 0.00 0.00 0.00 3.77
2915 3289 3.552294 CGCCGGTTTTCTCTTTCTATCTC 59.448 47.826 1.90 0.00 0.00 2.75
2919 3293 1.619827 TCCGCCGGTTTTCTCTTTCTA 59.380 47.619 1.63 0.00 0.00 2.10
2936 3310 1.668419 CCCCACAGATTTAGCTTCCG 58.332 55.000 0.00 0.00 0.00 4.30
2944 3318 2.163454 TGGTCAGCCCCACAGATTT 58.837 52.632 0.00 0.00 0.00 2.17
2945 3319 3.920817 TGGTCAGCCCCACAGATT 58.079 55.556 0.00 0.00 0.00 2.40
2951 3325 2.609610 GGTAGGTGGTCAGCCCCA 60.610 66.667 0.00 0.00 0.00 4.96
2952 3326 3.408853 GGGTAGGTGGTCAGCCCC 61.409 72.222 0.00 0.00 33.40 5.80
2953 3327 3.408853 GGGGTAGGTGGTCAGCCC 61.409 72.222 0.00 0.00 44.75 5.19
2954 3328 2.609610 TGGGGTAGGTGGTCAGCC 60.610 66.667 0.00 0.00 0.00 4.85
2955 3329 2.669240 GTGGGGTAGGTGGTCAGC 59.331 66.667 0.00 0.00 0.00 4.26
2956 3330 1.229529 AGGTGGGGTAGGTGGTCAG 60.230 63.158 0.00 0.00 0.00 3.51
2957 3331 1.229400 GAGGTGGGGTAGGTGGTCA 60.229 63.158 0.00 0.00 0.00 4.02
2958 3332 1.993948 GGAGGTGGGGTAGGTGGTC 60.994 68.421 0.00 0.00 0.00 4.02
2959 3333 2.124312 GGAGGTGGGGTAGGTGGT 59.876 66.667 0.00 0.00 0.00 4.16
2960 3334 0.919289 AATGGAGGTGGGGTAGGTGG 60.919 60.000 0.00 0.00 0.00 4.61
2961 3335 0.999712 AAATGGAGGTGGGGTAGGTG 59.000 55.000 0.00 0.00 0.00 4.00
2962 3336 0.999712 CAAATGGAGGTGGGGTAGGT 59.000 55.000 0.00 0.00 0.00 3.08
2963 3337 0.395724 GCAAATGGAGGTGGGGTAGG 60.396 60.000 0.00 0.00 0.00 3.18
2964 3338 0.331278 TGCAAATGGAGGTGGGGTAG 59.669 55.000 0.00 0.00 0.00 3.18
2965 3339 1.006813 ATGCAAATGGAGGTGGGGTA 58.993 50.000 0.00 0.00 0.00 3.69
2966 3340 0.615544 CATGCAAATGGAGGTGGGGT 60.616 55.000 0.00 0.00 0.00 4.95
2967 3341 0.615544 ACATGCAAATGGAGGTGGGG 60.616 55.000 0.00 0.00 0.00 4.96
2968 3342 1.205417 GAACATGCAAATGGAGGTGGG 59.795 52.381 0.00 0.00 29.18 4.61
2969 3343 2.173519 AGAACATGCAAATGGAGGTGG 58.826 47.619 0.00 0.00 29.18 4.61
2970 3344 4.460382 AGTTAGAACATGCAAATGGAGGTG 59.540 41.667 0.00 0.00 29.18 4.00
2971 3345 4.666512 AGTTAGAACATGCAAATGGAGGT 58.333 39.130 0.00 0.00 30.03 3.85
3006 3380 1.999648 ACACCATGTGCATTTCAGGT 58.000 45.000 0.00 0.00 36.98 4.00
3020 3394 7.327975 ACATGAGAGATATTTTCGTAACACCA 58.672 34.615 0.00 0.00 0.00 4.17
3042 3416 9.334947 CAAATAAGGAGATCAACATGACTACAT 57.665 33.333 0.00 0.00 37.19 2.29
3043 3417 8.321353 ACAAATAAGGAGATCAACATGACTACA 58.679 33.333 0.00 0.00 0.00 2.74
3044 3418 8.607459 CACAAATAAGGAGATCAACATGACTAC 58.393 37.037 0.00 0.00 0.00 2.73
3045 3419 8.539544 TCACAAATAAGGAGATCAACATGACTA 58.460 33.333 0.00 0.00 0.00 2.59
3046 3420 7.397221 TCACAAATAAGGAGATCAACATGACT 58.603 34.615 0.00 0.00 0.00 3.41
3047 3421 7.615582 TCACAAATAAGGAGATCAACATGAC 57.384 36.000 0.00 0.00 0.00 3.06
3070 3614 3.545703 CCCTGTACATTCACCTTCCATC 58.454 50.000 0.00 0.00 0.00 3.51
3089 3633 1.559682 TGACTCCCAAGATAACTGCCC 59.440 52.381 0.00 0.00 0.00 5.36
3104 3648 7.042950 GGAACCTAAGACCTAGAAAATGACTC 58.957 42.308 0.00 0.00 0.00 3.36
3114 3658 3.399952 TGGGAGGAACCTAAGACCTAG 57.600 52.381 0.00 0.00 38.98 3.02
3192 3767 7.621683 ACTTGGACTGGACTAAGAATCTTAGAT 59.378 37.037 30.30 17.41 33.62 1.98
3267 3844 8.970859 AAGTGTTATGATGAAGAAGGGAATAG 57.029 34.615 0.00 0.00 0.00 1.73
3302 3879 2.366916 CAATCAGTAGTCTGCTAGGGGG 59.633 54.545 0.00 0.00 41.10 5.40
3413 3990 0.548031 GCAGGAATCAGGATGGGTCA 59.452 55.000 0.00 0.00 36.16 4.02
3414 3991 0.179006 GGCAGGAATCAGGATGGGTC 60.179 60.000 0.00 0.00 36.16 4.46
3451 4028 2.279851 CACAGGTGTGGCGTCGAA 60.280 61.111 1.90 0.00 42.10 3.71
3462 4039 2.032681 GCGGCTTTCTCCACAGGT 59.967 61.111 0.00 0.00 0.00 4.00
3478 4055 1.501741 CACAAGGCATGTACCACGC 59.498 57.895 0.00 0.00 41.46 5.34
3504 4081 0.250467 AGACAAATCCTGTGTGCGCT 60.250 50.000 9.73 0.00 38.84 5.92
3522 4099 2.537625 CGAAATGAAAGCGAGGCTAGAG 59.462 50.000 0.00 0.00 38.25 2.43
3532 4109 1.168714 ACCAGAGCCGAAATGAAAGC 58.831 50.000 0.00 0.00 0.00 3.51
3573 4150 2.361737 GAAACCAGGGAGGCTGCC 60.362 66.667 18.55 18.55 43.14 4.85
3608 4185 3.006859 ACCAACACATCATGTCTCGAGAA 59.993 43.478 18.55 8.22 42.31 2.87
3611 4188 2.562738 AGACCAACACATCATGTCTCGA 59.437 45.455 0.00 0.00 42.31 4.04
3624 4201 5.984725 TCTGACTTTTGAAGTAGACCAACA 58.015 37.500 0.00 0.00 43.03 3.33
3625 4202 7.355778 CAATCTGACTTTTGAAGTAGACCAAC 58.644 38.462 0.00 0.00 43.03 3.77
3656 4233 2.050077 GGACGTGCAAAAGCCTGC 60.050 61.111 0.63 0.00 42.95 4.85
3677 4254 6.670869 TTTCCTCTGAAAACTGCAGATTGCA 61.671 40.000 23.35 19.11 43.33 4.08
3711 4288 4.143473 GCATGCAACTGATGTTCTTTTTCG 60.143 41.667 14.21 0.00 33.52 3.46
3720 4297 1.271379 CACCAAGCATGCAACTGATGT 59.729 47.619 21.98 5.62 0.00 3.06
3808 4433 2.297701 CACAAAGGGTAGCACAACAGT 58.702 47.619 0.00 0.00 0.00 3.55
3820 4445 2.946346 GCCCACATGCCACAAAGGG 61.946 63.158 0.00 0.00 39.33 3.95
3827 4452 2.124612 CAGATCGCCCACATGCCA 60.125 61.111 0.00 0.00 0.00 4.92
3903 4528 1.773391 CCATCTCCCAGGCCCATCT 60.773 63.158 0.00 0.00 0.00 2.90
3924 4549 8.857098 AGAATTTGATGTTTGGATCATATCTGG 58.143 33.333 0.00 0.00 32.35 3.86
3968 4594 7.542130 GCGTTTCCATTTCATGATTCTAGTTTT 59.458 33.333 0.00 0.00 0.00 2.43
3982 4608 0.243636 CAGTGGGGCGTTTCCATTTC 59.756 55.000 0.00 0.00 36.58 2.17
3998 4624 6.831868 ACATTCACCTTTACAAAACCTACAGT 59.168 34.615 0.00 0.00 0.00 3.55
4062 4696 1.143684 CATCCCGAATGATCACCCCTT 59.856 52.381 0.00 0.00 37.59 3.95
4091 4725 4.463891 AGGGAAAGATTGTGCAATAACCTG 59.536 41.667 0.00 0.00 0.00 4.00
4092 4726 4.677182 AGGGAAAGATTGTGCAATAACCT 58.323 39.130 0.00 0.00 0.00 3.50
4106 6293 2.497675 CGATGAAGTCTGGAGGGAAAGA 59.502 50.000 0.00 0.00 0.00 2.52
4107 6294 2.419297 CCGATGAAGTCTGGAGGGAAAG 60.419 54.545 0.00 0.00 0.00 2.62
4116 6303 0.534412 AGGCTCACCGATGAAGTCTG 59.466 55.000 0.00 0.00 42.76 3.51
4127 6314 1.080025 GTACACCGACAGGCTCACC 60.080 63.158 0.00 0.00 42.76 4.02
4129 6316 0.601558 GAAGTACACCGACAGGCTCA 59.398 55.000 0.00 0.00 42.76 4.26
4137 6324 1.254026 CCACAGGAGAAGTACACCGA 58.746 55.000 0.00 0.00 34.46 4.69
4138 6325 0.389948 GCCACAGGAGAAGTACACCG 60.390 60.000 0.00 0.00 34.46 4.94
4140 6327 1.941668 GCAGCCACAGGAGAAGTACAC 60.942 57.143 0.00 0.00 0.00 2.90
4143 6330 1.888436 CGGCAGCCACAGGAGAAGTA 61.888 60.000 13.30 0.00 0.00 2.24
4146 6333 4.704833 GCGGCAGCCACAGGAGAA 62.705 66.667 13.30 0.00 37.42 2.87
4167 6354 2.182181 GGTTATTACACCGGCCGCC 61.182 63.158 22.85 8.46 0.00 6.13
4168 6355 0.745486 AAGGTTATTACACCGGCCGC 60.745 55.000 22.85 1.61 42.33 6.53
4169 6356 1.667212 GAAAGGTTATTACACCGGCCG 59.333 52.381 21.04 21.04 42.33 6.13
4170 6357 2.019249 GGAAAGGTTATTACACCGGCC 58.981 52.381 0.00 0.00 42.33 6.13
4171 6358 2.019249 GGGAAAGGTTATTACACCGGC 58.981 52.381 0.00 0.00 42.33 6.13
4172 6359 3.639672 AGGGAAAGGTTATTACACCGG 57.360 47.619 0.00 0.00 42.33 5.28
4173 6360 4.581868 TGAAGGGAAAGGTTATTACACCG 58.418 43.478 0.00 0.00 42.33 4.94
4174 6361 5.646793 GTCTGAAGGGAAAGGTTATTACACC 59.353 44.000 0.00 0.00 37.04 4.16
4175 6362 6.473758 AGTCTGAAGGGAAAGGTTATTACAC 58.526 40.000 0.00 0.00 0.00 2.90
4176 6363 6.697641 AGTCTGAAGGGAAAGGTTATTACA 57.302 37.500 0.00 0.00 0.00 2.41
4177 6364 7.166167 TGAAGTCTGAAGGGAAAGGTTATTAC 58.834 38.462 0.00 0.00 0.00 1.89
4178 6365 7.324388 TGAAGTCTGAAGGGAAAGGTTATTA 57.676 36.000 0.00 0.00 0.00 0.98
4179 6366 6.200878 TGAAGTCTGAAGGGAAAGGTTATT 57.799 37.500 0.00 0.00 0.00 1.40
4180 6367 5.843019 TGAAGTCTGAAGGGAAAGGTTAT 57.157 39.130 0.00 0.00 0.00 1.89
4181 6368 5.568825 CGATGAAGTCTGAAGGGAAAGGTTA 60.569 44.000 0.00 0.00 0.00 2.85
4182 6369 4.657013 GATGAAGTCTGAAGGGAAAGGTT 58.343 43.478 0.00 0.00 0.00 3.50
4183 6370 3.307059 CGATGAAGTCTGAAGGGAAAGGT 60.307 47.826 0.00 0.00 0.00 3.50
4184 6371 3.265791 CGATGAAGTCTGAAGGGAAAGG 58.734 50.000 0.00 0.00 0.00 3.11
4185 6372 3.265791 CCGATGAAGTCTGAAGGGAAAG 58.734 50.000 0.00 0.00 0.00 2.62
4186 6373 2.637872 ACCGATGAAGTCTGAAGGGAAA 59.362 45.455 0.00 0.00 0.00 3.13
4187 6374 2.028112 CACCGATGAAGTCTGAAGGGAA 60.028 50.000 0.00 0.00 0.00 3.97
4188 6375 1.550524 CACCGATGAAGTCTGAAGGGA 59.449 52.381 0.00 0.00 0.00 4.20
4189 6376 1.550524 TCACCGATGAAGTCTGAAGGG 59.449 52.381 0.00 0.00 0.00 3.95
4190 6377 2.886081 CTCACCGATGAAGTCTGAAGG 58.114 52.381 0.00 0.00 33.30 3.46
4191 6378 2.266554 GCTCACCGATGAAGTCTGAAG 58.733 52.381 0.00 0.00 33.30 3.02
4192 6379 1.066858 GGCTCACCGATGAAGTCTGAA 60.067 52.381 0.00 0.00 33.30 3.02
4193 6380 0.532573 GGCTCACCGATGAAGTCTGA 59.467 55.000 0.00 0.00 33.30 3.27
4194 6381 0.534412 AGGCTCACCGATGAAGTCTG 59.466 55.000 0.00 0.00 42.76 3.51
4195 6382 0.534412 CAGGCTCACCGATGAAGTCT 59.466 55.000 0.00 0.00 42.76 3.24
4196 6383 0.247736 ACAGGCTCACCGATGAAGTC 59.752 55.000 0.00 0.00 42.76 3.01
4197 6384 0.247736 GACAGGCTCACCGATGAAGT 59.752 55.000 0.00 0.00 42.76 3.01
4198 6385 0.803768 CGACAGGCTCACCGATGAAG 60.804 60.000 0.00 0.00 42.76 3.02
4199 6386 1.215382 CGACAGGCTCACCGATGAA 59.785 57.895 0.00 0.00 42.76 2.57
4200 6387 1.037579 ATCGACAGGCTCACCGATGA 61.038 55.000 12.47 0.00 42.76 2.92
4201 6388 1.439228 ATCGACAGGCTCACCGATG 59.561 57.895 12.47 0.00 42.76 3.84
4202 6389 1.323271 ACATCGACAGGCTCACCGAT 61.323 55.000 8.74 8.74 42.76 4.18
4203 6390 0.678684 TACATCGACAGGCTCACCGA 60.679 55.000 5.14 5.14 42.76 4.69
4204 6391 0.525668 GTACATCGACAGGCTCACCG 60.526 60.000 0.00 0.00 42.76 4.94
4205 6392 0.818296 AGTACATCGACAGGCTCACC 59.182 55.000 0.00 0.00 0.00 4.02
4206 6393 2.164624 AGAAGTACATCGACAGGCTCAC 59.835 50.000 0.00 0.00 0.00 3.51
4207 6394 2.423892 GAGAAGTACATCGACAGGCTCA 59.576 50.000 0.00 0.00 0.00 4.26
4208 6395 2.223618 GGAGAAGTACATCGACAGGCTC 60.224 54.545 0.00 0.00 0.00 4.70
4209 6396 1.751924 GGAGAAGTACATCGACAGGCT 59.248 52.381 0.00 0.00 0.00 4.58
4210 6397 1.751924 AGGAGAAGTACATCGACAGGC 59.248 52.381 0.00 0.00 0.00 4.85
4211 6398 4.022762 CCATAGGAGAAGTACATCGACAGG 60.023 50.000 0.00 0.00 0.00 4.00
4212 6399 4.557695 GCCATAGGAGAAGTACATCGACAG 60.558 50.000 0.00 0.00 0.00 3.51
4213 6400 3.318275 GCCATAGGAGAAGTACATCGACA 59.682 47.826 0.00 0.00 0.00 4.35
4214 6401 3.570550 AGCCATAGGAGAAGTACATCGAC 59.429 47.826 0.00 0.00 0.00 4.20
4215 6402 3.570125 CAGCCATAGGAGAAGTACATCGA 59.430 47.826 0.00 0.00 0.00 3.59
4216 6403 3.858877 GCAGCCATAGGAGAAGTACATCG 60.859 52.174 0.00 0.00 0.00 3.84
4217 6404 3.556004 GGCAGCCATAGGAGAAGTACATC 60.556 52.174 6.55 0.00 0.00 3.06
4218 6405 2.370189 GGCAGCCATAGGAGAAGTACAT 59.630 50.000 6.55 0.00 0.00 2.29
4219 6406 1.762957 GGCAGCCATAGGAGAAGTACA 59.237 52.381 6.55 0.00 0.00 2.90
4220 6407 1.269831 CGGCAGCCATAGGAGAAGTAC 60.270 57.143 13.30 0.00 0.00 2.73
4221 6408 1.040646 CGGCAGCCATAGGAGAAGTA 58.959 55.000 13.30 0.00 0.00 2.24
4222 6409 1.826024 CGGCAGCCATAGGAGAAGT 59.174 57.895 13.30 0.00 0.00 3.01
4223 6410 1.596477 GCGGCAGCCATAGGAGAAG 60.596 63.158 13.30 0.00 37.42 2.85
4224 6411 1.626356 AAGCGGCAGCCATAGGAGAA 61.626 55.000 13.30 0.00 46.67 2.87
4225 6412 1.626356 AAAGCGGCAGCCATAGGAGA 61.626 55.000 13.30 0.00 46.67 3.71
4226 6413 1.153086 AAAGCGGCAGCCATAGGAG 60.153 57.895 13.30 0.00 46.67 3.69
4227 6414 1.451927 CAAAGCGGCAGCCATAGGA 60.452 57.895 13.30 0.00 46.67 2.94
4228 6415 2.484062 CCAAAGCGGCAGCCATAGG 61.484 63.158 13.30 1.40 46.67 2.57
4229 6416 3.113745 CCAAAGCGGCAGCCATAG 58.886 61.111 13.30 0.00 46.67 2.23
4256 6443 1.761784 CACTGGGATTCTCCTCTCTGG 59.238 57.143 0.00 0.00 36.57 3.86
4291 6508 2.265739 CTAAGAGCCGCACCTGCA 59.734 61.111 0.00 0.00 42.21 4.41
4293 6510 2.512515 GCCTAAGAGCCGCACCTG 60.513 66.667 0.00 0.00 0.00 4.00
4294 6511 4.148825 CGCCTAAGAGCCGCACCT 62.149 66.667 0.00 0.00 0.00 4.00
4295 6512 2.925162 ATTCGCCTAAGAGCCGCACC 62.925 60.000 0.00 0.00 0.00 5.01
4297 6514 1.521457 CATTCGCCTAAGAGCCGCA 60.521 57.895 0.00 0.00 0.00 5.69
4298 6515 2.247437 CCATTCGCCTAAGAGCCGC 61.247 63.158 0.00 0.00 0.00 6.53
4299 6516 2.247437 GCCATTCGCCTAAGAGCCG 61.247 63.158 0.00 0.00 0.00 5.52
4301 6518 2.247437 CCGCCATTCGCCTAAGAGC 61.247 63.158 0.00 0.00 36.73 4.09
4302 6519 1.144057 ACCGCCATTCGCCTAAGAG 59.856 57.895 0.00 0.00 36.73 2.85
4303 6520 1.153449 CACCGCCATTCGCCTAAGA 60.153 57.895 0.00 0.00 36.73 2.10
4304 6521 1.024579 AACACCGCCATTCGCCTAAG 61.025 55.000 0.00 0.00 36.73 2.18
4305 6522 0.606944 AAACACCGCCATTCGCCTAA 60.607 50.000 0.00 0.00 36.73 2.69
4306 6523 1.003112 AAACACCGCCATTCGCCTA 60.003 52.632 0.00 0.00 36.73 3.93
4307 6524 2.282180 AAACACCGCCATTCGCCT 60.282 55.556 0.00 0.00 36.73 5.52
4308 6525 1.862602 AAGAAACACCGCCATTCGCC 61.863 55.000 0.00 0.00 36.73 5.54
4309 6526 0.454452 GAAGAAACACCGCCATTCGC 60.454 55.000 0.00 0.00 36.73 4.70
4310 6527 1.156736 AGAAGAAACACCGCCATTCG 58.843 50.000 0.00 0.00 38.08 3.34
4311 6528 2.552315 TGAAGAAGAAACACCGCCATTC 59.448 45.455 0.00 0.00 0.00 2.67
4312 6529 2.582052 TGAAGAAGAAACACCGCCATT 58.418 42.857 0.00 0.00 0.00 3.16
4313 6530 2.270352 TGAAGAAGAAACACCGCCAT 57.730 45.000 0.00 0.00 0.00 4.40
4314 6531 1.946768 CTTGAAGAAGAAACACCGCCA 59.053 47.619 0.00 0.00 0.00 5.69
4315 6532 1.947456 ACTTGAAGAAGAAACACCGCC 59.053 47.619 0.00 0.00 32.98 6.13
4316 6533 3.692791 AACTTGAAGAAGAAACACCGC 57.307 42.857 0.00 0.00 32.98 5.68
4349 6566 1.131883 GACGAAACGAGGAGGATCGAA 59.868 52.381 2.78 0.00 45.56 3.71
4379 6597 1.538075 GCCGAGAGCTCCATCTACTAC 59.462 57.143 10.93 0.00 38.99 2.73
4384 6602 1.152943 TACGCCGAGAGCTCCATCT 60.153 57.895 10.93 0.00 40.39 2.90
4387 6605 0.752009 AATCTACGCCGAGAGCTCCA 60.752 55.000 10.93 0.00 40.39 3.86
4395 6613 0.892755 ACAACAGGAATCTACGCCGA 59.107 50.000 0.00 0.00 0.00 5.54
4396 6614 1.135083 AGACAACAGGAATCTACGCCG 60.135 52.381 0.00 0.00 0.00 6.46
4398 6616 2.166664 AGGAGACAACAGGAATCTACGC 59.833 50.000 0.00 0.00 0.00 4.42
4399 6617 4.177026 CAAGGAGACAACAGGAATCTACG 58.823 47.826 0.00 0.00 0.00 3.51
4400 6618 4.508662 CCAAGGAGACAACAGGAATCTAC 58.491 47.826 0.00 0.00 0.00 2.59
4405 6623 0.771127 CCCCAAGGAGACAACAGGAA 59.229 55.000 0.00 0.00 33.47 3.36
4412 6630 3.636231 CACCGCCCCAAGGAGACA 61.636 66.667 0.00 0.00 34.21 3.41
4453 6672 0.438830 GACGTGACACCAAATCTCGC 59.561 55.000 0.00 0.00 36.74 5.03
4469 6688 4.687483 TGCATATATCTGAAGCACATGACG 59.313 41.667 0.00 0.00 0.00 4.35
4470 6689 6.348295 CCTTGCATATATCTGAAGCACATGAC 60.348 42.308 0.00 0.00 34.56 3.06
4471 6690 5.704053 CCTTGCATATATCTGAAGCACATGA 59.296 40.000 0.00 0.00 34.56 3.07
4472 6691 5.106277 CCCTTGCATATATCTGAAGCACATG 60.106 44.000 0.00 0.00 34.56 3.21
4473 6692 5.008331 CCCTTGCATATATCTGAAGCACAT 58.992 41.667 0.00 0.00 34.56 3.21
4474 6693 4.141413 ACCCTTGCATATATCTGAAGCACA 60.141 41.667 0.00 0.00 34.56 4.57
4486 6705 3.317993 GTCGCCATTTAACCCTTGCATAT 59.682 43.478 0.00 0.00 0.00 1.78
4491 6710 1.129811 GTCGTCGCCATTTAACCCTTG 59.870 52.381 0.00 0.00 0.00 3.61
4519 6738 1.899437 CTTAAGGACCAGCGCCCTGA 61.899 60.000 2.29 0.00 41.77 3.86
4520 6739 1.450312 CTTAAGGACCAGCGCCCTG 60.450 63.158 2.29 0.00 38.85 4.45
4525 6744 1.745489 GTGGCCTTAAGGACCAGCG 60.745 63.158 27.83 3.62 44.80 5.18
4529 6748 2.038837 GCACGTGGCCTTAAGGACC 61.039 63.158 25.11 22.99 44.80 4.46
4531 6750 1.302192 GTGCACGTGGCCTTAAGGA 60.302 57.895 26.21 1.67 43.89 3.36
4540 6759 1.557443 GGAAGTCTTCGTGCACGTGG 61.557 60.000 35.74 27.59 40.80 4.94
4542 6761 0.597637 CAGGAAGTCTTCGTGCACGT 60.598 55.000 35.74 18.16 38.51 4.49
4549 6768 2.526304 TGACAACCAGGAAGTCTTCG 57.474 50.000 14.41 0.00 33.56 3.79
4558 6777 4.002982 TGATCTTTTCGATGACAACCAGG 58.997 43.478 0.00 0.00 30.84 4.45
4561 6780 4.083324 TGCTTGATCTTTTCGATGACAACC 60.083 41.667 0.00 0.00 30.84 3.77
4573 6792 0.393537 CGGGAGCCTGCTTGATCTTT 60.394 55.000 0.00 0.00 0.00 2.52
4576 6795 1.823295 TACGGGAGCCTGCTTGATC 59.177 57.895 0.00 0.00 0.00 2.92
4577 6796 4.050313 TACGGGAGCCTGCTTGAT 57.950 55.556 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.