Multiple sequence alignment - TraesCS1D01G310300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G310300 chr1D 100.000 2502 0 0 1 2502 406553781 406551280 0.000000e+00 4621.0
1 TraesCS1D01G310300 chr1D 88.221 416 40 8 32 445 11134440 11134032 2.890000e-134 488.0
2 TraesCS1D01G310300 chr1D 85.613 424 49 9 26 446 86114426 86114840 3.820000e-118 435.0
3 TraesCS1D01G310300 chr1D 88.281 256 25 4 1699 1952 406552018 406551766 4.040000e-78 302.0
4 TraesCS1D01G310300 chr1D 88.281 256 25 4 1764 2016 406552083 406551830 4.040000e-78 302.0
5 TraesCS1D01G310300 chr1D 96.923 65 2 0 1214 1278 406552531 406552467 2.630000e-20 110.0
6 TraesCS1D01G310300 chr1D 96.923 65 2 0 1251 1315 406552568 406552504 2.630000e-20 110.0
7 TraesCS1D01G310300 chr1D 96.875 32 0 1 1105 1136 348063692 348063722 4.000000e-03 52.8
8 TraesCS1D01G310300 chr1B 91.221 729 30 6 1775 2502 546534471 546533776 0.000000e+00 961.0
9 TraesCS1D01G310300 chr1B 88.671 662 35 12 1301 1952 546534879 546534248 0.000000e+00 771.0
10 TraesCS1D01G310300 chr1B 85.968 620 46 19 628 1221 546535481 546534877 2.110000e-175 625.0
11 TraesCS1D01G310300 chr1B 92.143 140 7 3 1839 1976 546534471 546534334 7.060000e-46 195.0
12 TraesCS1D01G310300 chr1B 80.319 188 19 2 1699 1886 546534417 546534248 2.610000e-25 126.0
13 TraesCS1D01G310300 chr1A 92.697 671 20 13 1833 2502 501708064 501707422 0.000000e+00 941.0
14 TraesCS1D01G310300 chr1A 95.955 445 12 3 1277 1719 501708522 501708082 0.000000e+00 717.0
15 TraesCS1D01G310300 chr1A 85.575 513 40 22 743 1237 501708988 501708492 7.990000e-140 507.0
16 TraesCS1D01G310300 chr1A 90.210 143 10 4 1704 1844 501708064 501707924 1.530000e-42 183.0
17 TraesCS1D01G310300 chr1A 91.566 83 4 3 1699 1780 501708004 501707924 7.320000e-21 111.0
18 TraesCS1D01G310300 chr1A 100.000 29 0 0 1108 1136 448927051 448927079 1.000000e-03 54.7
19 TraesCS1D01G310300 chr7D 88.889 396 37 5 27 422 34371014 34371402 4.840000e-132 481.0
20 TraesCS1D01G310300 chr3D 86.730 422 47 7 27 446 567264921 567265335 6.310000e-126 460.0
21 TraesCS1D01G310300 chr3D 87.345 403 44 6 33 433 41428355 41428752 2.930000e-124 455.0
22 TraesCS1D01G310300 chr3D 86.085 424 45 12 25 445 508202223 508201811 6.350000e-121 444.0
23 TraesCS1D01G310300 chr2D 85.851 417 49 9 32 445 616147641 616147232 3.820000e-118 435.0
24 TraesCS1D01G310300 chr6D 85.372 417 52 7 32 445 95717440 95717850 8.270000e-115 424.0
25 TraesCS1D01G310300 chr6D 85.337 416 50 9 32 445 141931905 141931499 1.070000e-113 420.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G310300 chr1D 406551280 406553781 2501 True 1089.0 4621 94.0816 1 2502 5 chr1D.!!$R2 2501
1 TraesCS1D01G310300 chr1B 546533776 546535481 1705 True 535.6 961 87.6644 628 2502 5 chr1B.!!$R1 1874
2 TraesCS1D01G310300 chr1A 501707422 501708988 1566 True 491.8 941 91.2006 743 2502 5 chr1A.!!$R1 1759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.036952 CTGGAGAGCTCTCGGCAAAA 60.037 55.0 32.08 15.08 43.76 2.44 F
825 842 0.041663 CCGCAAATCACACGTCGTTT 60.042 50.0 0.00 0.00 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 1283 0.174845 CGATCCGTCAGGCAGGTTAA 59.825 55.0 0.0 0.0 37.47 2.01 R
1989 2072 2.751806 CCAGGTGGATTTTCTCTCTTGC 59.248 50.0 0.0 0.0 37.39 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.774890 CATCTTATATCTGTGAATGGAAGGAG 57.225 38.462 0.00 0.00 0.00 3.69
26 27 7.921041 TCTTATATCTGTGAATGGAAGGAGT 57.079 36.000 0.00 0.00 0.00 3.85
27 28 9.607333 ATCTTATATCTGTGAATGGAAGGAGTA 57.393 33.333 0.00 0.00 0.00 2.59
28 29 9.607333 TCTTATATCTGTGAATGGAAGGAGTAT 57.393 33.333 0.00 0.00 0.00 2.12
29 30 9.650539 CTTATATCTGTGAATGGAAGGAGTATG 57.349 37.037 0.00 0.00 0.00 2.39
30 31 4.760530 TCTGTGAATGGAAGGAGTATGG 57.239 45.455 0.00 0.00 0.00 2.74
31 32 3.455910 TCTGTGAATGGAAGGAGTATGGG 59.544 47.826 0.00 0.00 0.00 4.00
32 33 3.455910 CTGTGAATGGAAGGAGTATGGGA 59.544 47.826 0.00 0.00 0.00 4.37
33 34 3.849574 TGTGAATGGAAGGAGTATGGGAA 59.150 43.478 0.00 0.00 0.00 3.97
34 35 4.290985 TGTGAATGGAAGGAGTATGGGAAA 59.709 41.667 0.00 0.00 0.00 3.13
35 36 5.222233 TGTGAATGGAAGGAGTATGGGAAAA 60.222 40.000 0.00 0.00 0.00 2.29
36 37 5.893824 GTGAATGGAAGGAGTATGGGAAAAT 59.106 40.000 0.00 0.00 0.00 1.82
37 38 6.039829 GTGAATGGAAGGAGTATGGGAAAATC 59.960 42.308 0.00 0.00 0.00 2.17
38 39 4.519906 TGGAAGGAGTATGGGAAAATCC 57.480 45.455 0.00 0.00 35.23 3.01
39 40 3.855599 TGGAAGGAGTATGGGAAAATCCA 59.144 43.478 0.00 0.00 38.64 3.41
41 42 5.073428 GGAAGGAGTATGGGAAAATCCATC 58.927 45.833 0.00 0.00 43.57 3.51
42 43 5.163045 GGAAGGAGTATGGGAAAATCCATCT 60.163 44.000 0.00 0.00 43.57 2.90
43 44 5.574970 AGGAGTATGGGAAAATCCATCTC 57.425 43.478 0.00 7.07 43.57 2.75
44 45 5.230759 AGGAGTATGGGAAAATCCATCTCT 58.769 41.667 15.69 10.08 43.57 3.10
45 46 5.072872 AGGAGTATGGGAAAATCCATCTCTG 59.927 44.000 15.69 0.00 43.57 3.35
46 47 4.723309 AGTATGGGAAAATCCATCTCTGC 58.277 43.478 0.00 0.00 43.57 4.26
47 48 3.675348 ATGGGAAAATCCATCTCTGCA 57.325 42.857 0.00 0.00 43.57 4.41
48 49 2.726821 TGGGAAAATCCATCTCTGCAC 58.273 47.619 0.00 0.00 38.64 4.57
49 50 2.027385 GGGAAAATCCATCTCTGCACC 58.973 52.381 0.00 0.00 38.64 5.01
50 51 2.027385 GGAAAATCCATCTCTGCACCC 58.973 52.381 0.00 0.00 36.28 4.61
51 52 1.672881 GAAAATCCATCTCTGCACCCG 59.327 52.381 0.00 0.00 0.00 5.28
52 53 0.911769 AAATCCATCTCTGCACCCGA 59.088 50.000 0.00 0.00 0.00 5.14
53 54 0.467384 AATCCATCTCTGCACCCGAG 59.533 55.000 0.00 0.00 0.00 4.63
54 55 2.037620 ATCCATCTCTGCACCCGAGC 62.038 60.000 0.00 0.00 0.00 5.03
55 56 2.729479 CCATCTCTGCACCCGAGCT 61.729 63.158 0.00 0.00 34.99 4.09
56 57 1.227205 CATCTCTGCACCCGAGCTC 60.227 63.158 2.73 2.73 34.99 4.09
57 58 1.683707 ATCTCTGCACCCGAGCTCA 60.684 57.895 15.40 0.00 34.99 4.26
58 59 1.047596 ATCTCTGCACCCGAGCTCAT 61.048 55.000 15.40 0.00 34.99 2.90
59 60 1.227205 CTCTGCACCCGAGCTCATC 60.227 63.158 15.40 0.00 34.99 2.92
60 61 1.674764 CTCTGCACCCGAGCTCATCT 61.675 60.000 15.40 0.00 34.99 2.90
61 62 1.521010 CTGCACCCGAGCTCATCTG 60.521 63.158 15.40 5.86 34.99 2.90
62 63 2.894387 GCACCCGAGCTCATCTGC 60.894 66.667 15.40 12.21 0.00 4.26
63 64 2.580815 CACCCGAGCTCATCTGCA 59.419 61.111 15.40 0.00 34.99 4.41
64 65 1.812922 CACCCGAGCTCATCTGCAC 60.813 63.158 15.40 0.00 34.99 4.57
65 66 2.202987 CCCGAGCTCATCTGCACC 60.203 66.667 15.40 0.00 34.99 5.01
66 67 2.202987 CCGAGCTCATCTGCACCC 60.203 66.667 15.40 0.00 34.99 4.61
67 68 2.202987 CGAGCTCATCTGCACCCC 60.203 66.667 15.40 0.00 34.99 4.95
68 69 2.191641 GAGCTCATCTGCACCCCC 59.808 66.667 9.40 0.00 34.99 5.40
69 70 3.746949 GAGCTCATCTGCACCCCCG 62.747 68.421 9.40 0.00 34.99 5.73
71 72 3.790437 CTCATCTGCACCCCCGCT 61.790 66.667 0.00 0.00 0.00 5.52
72 73 2.364973 TCATCTGCACCCCCGCTA 60.365 61.111 0.00 0.00 0.00 4.26
73 74 1.971505 CTCATCTGCACCCCCGCTAA 61.972 60.000 0.00 0.00 0.00 3.09
74 75 1.819632 CATCTGCACCCCCGCTAAC 60.820 63.158 0.00 0.00 0.00 2.34
75 76 3.385749 ATCTGCACCCCCGCTAACG 62.386 63.158 0.00 0.00 39.67 3.18
76 77 4.077184 CTGCACCCCCGCTAACGA 62.077 66.667 0.00 0.00 43.93 3.85
77 78 3.599285 CTGCACCCCCGCTAACGAA 62.599 63.158 0.00 0.00 43.93 3.85
78 79 2.358984 GCACCCCCGCTAACGAAA 60.359 61.111 0.00 0.00 43.93 3.46
79 80 1.967494 GCACCCCCGCTAACGAAAA 60.967 57.895 0.00 0.00 43.93 2.29
80 81 1.517210 GCACCCCCGCTAACGAAAAA 61.517 55.000 0.00 0.00 43.93 1.94
141 142 2.570415 TTTTTCCATGCGGTAGACCA 57.430 45.000 0.00 0.00 35.14 4.02
142 143 2.799126 TTTTCCATGCGGTAGACCAT 57.201 45.000 0.00 0.00 35.14 3.55
143 144 2.799126 TTTCCATGCGGTAGACCATT 57.201 45.000 0.00 0.00 35.14 3.16
144 145 2.799126 TTCCATGCGGTAGACCATTT 57.201 45.000 0.00 0.00 35.14 2.32
145 146 2.036958 TCCATGCGGTAGACCATTTG 57.963 50.000 0.00 0.00 35.14 2.32
146 147 1.557371 TCCATGCGGTAGACCATTTGA 59.443 47.619 0.00 0.00 35.14 2.69
147 148 2.172505 TCCATGCGGTAGACCATTTGAT 59.827 45.455 0.00 0.00 35.14 2.57
148 149 2.291465 CCATGCGGTAGACCATTTGATG 59.709 50.000 0.00 0.00 35.14 3.07
149 150 1.378531 TGCGGTAGACCATTTGATGC 58.621 50.000 0.00 0.00 35.14 3.91
150 151 0.304705 GCGGTAGACCATTTGATGCG 59.695 55.000 0.00 0.00 35.14 4.73
151 152 1.651987 CGGTAGACCATTTGATGCGT 58.348 50.000 0.00 0.00 35.14 5.24
152 153 1.327460 CGGTAGACCATTTGATGCGTG 59.673 52.381 0.00 0.00 35.14 5.34
153 154 2.627945 GGTAGACCATTTGATGCGTGA 58.372 47.619 0.00 0.00 35.64 4.35
154 155 2.609459 GGTAGACCATTTGATGCGTGAG 59.391 50.000 0.00 0.00 35.64 3.51
155 156 1.742761 AGACCATTTGATGCGTGAGG 58.257 50.000 0.00 0.00 0.00 3.86
156 157 1.003580 AGACCATTTGATGCGTGAGGT 59.996 47.619 0.00 0.00 0.00 3.85
157 158 1.812571 GACCATTTGATGCGTGAGGTT 59.187 47.619 0.00 0.00 0.00 3.50
158 159 1.812571 ACCATTTGATGCGTGAGGTTC 59.187 47.619 0.00 0.00 0.00 3.62
159 160 1.202065 CCATTTGATGCGTGAGGTTCG 60.202 52.381 0.00 0.00 0.00 3.95
160 161 1.731709 CATTTGATGCGTGAGGTTCGA 59.268 47.619 0.00 0.00 0.00 3.71
161 162 2.093306 TTTGATGCGTGAGGTTCGAT 57.907 45.000 0.00 0.00 0.00 3.59
162 163 1.640428 TTGATGCGTGAGGTTCGATC 58.360 50.000 0.00 0.00 0.00 3.69
163 164 0.530288 TGATGCGTGAGGTTCGATCA 59.470 50.000 0.00 0.00 0.00 2.92
164 165 1.067213 TGATGCGTGAGGTTCGATCAA 60.067 47.619 0.00 0.00 0.00 2.57
165 166 1.999735 GATGCGTGAGGTTCGATCAAA 59.000 47.619 0.00 0.00 0.00 2.69
166 167 2.093306 TGCGTGAGGTTCGATCAAAT 57.907 45.000 0.00 0.00 0.00 2.32
167 168 2.422597 TGCGTGAGGTTCGATCAAATT 58.577 42.857 0.00 0.00 0.00 1.82
168 169 2.811431 TGCGTGAGGTTCGATCAAATTT 59.189 40.909 0.00 0.00 0.00 1.82
169 170 3.252215 TGCGTGAGGTTCGATCAAATTTT 59.748 39.130 0.00 0.00 0.00 1.82
170 171 3.846335 GCGTGAGGTTCGATCAAATTTTC 59.154 43.478 0.00 0.00 0.00 2.29
171 172 4.612712 GCGTGAGGTTCGATCAAATTTTCA 60.613 41.667 0.00 0.00 0.00 2.69
172 173 5.448438 CGTGAGGTTCGATCAAATTTTCAA 58.552 37.500 0.00 0.00 0.00 2.69
173 174 5.912396 CGTGAGGTTCGATCAAATTTTCAAA 59.088 36.000 0.00 0.00 0.00 2.69
174 175 6.582295 CGTGAGGTTCGATCAAATTTTCAAAT 59.418 34.615 0.00 0.00 0.00 2.32
175 176 7.201266 CGTGAGGTTCGATCAAATTTTCAAATC 60.201 37.037 0.00 0.00 0.00 2.17
176 177 7.594758 GTGAGGTTCGATCAAATTTTCAAATCA 59.405 33.333 0.00 0.00 0.00 2.57
177 178 8.306038 TGAGGTTCGATCAAATTTTCAAATCAT 58.694 29.630 0.00 0.00 0.00 2.45
178 179 9.143631 GAGGTTCGATCAAATTTTCAAATCATT 57.856 29.630 0.00 0.00 0.00 2.57
179 180 9.492973 AGGTTCGATCAAATTTTCAAATCATTT 57.507 25.926 0.00 0.00 0.00 2.32
180 181 9.532697 GGTTCGATCAAATTTTCAAATCATTTG 57.467 29.630 3.46 3.46 41.96 2.32
193 194 7.387119 TCAAATCATTTGAACATCTGGAGAG 57.613 36.000 10.55 0.00 45.94 3.20
194 195 5.831702 AATCATTTGAACATCTGGAGAGC 57.168 39.130 0.00 0.00 0.00 4.09
195 196 4.564782 TCATTTGAACATCTGGAGAGCT 57.435 40.909 0.00 0.00 0.00 4.09
196 197 4.511527 TCATTTGAACATCTGGAGAGCTC 58.488 43.478 5.27 5.27 0.00 4.09
197 198 4.224594 TCATTTGAACATCTGGAGAGCTCT 59.775 41.667 18.28 18.28 0.00 4.09
198 199 3.883830 TTGAACATCTGGAGAGCTCTC 57.116 47.619 31.89 31.89 42.14 3.20
199 200 1.747924 TGAACATCTGGAGAGCTCTCG 59.252 52.381 32.08 21.70 43.76 4.04
200 201 1.066908 GAACATCTGGAGAGCTCTCGG 59.933 57.143 32.08 26.48 43.76 4.63
201 202 1.363443 CATCTGGAGAGCTCTCGGC 59.637 63.158 32.08 21.85 43.76 5.54
202 203 1.076412 ATCTGGAGAGCTCTCGGCA 60.076 57.895 32.08 24.72 43.76 5.69
203 204 0.685785 ATCTGGAGAGCTCTCGGCAA 60.686 55.000 32.08 19.83 43.76 4.52
204 205 0.900182 TCTGGAGAGCTCTCGGCAAA 60.900 55.000 32.08 13.79 43.76 3.68
205 206 0.036952 CTGGAGAGCTCTCGGCAAAA 60.037 55.000 32.08 15.08 43.76 2.44
206 207 0.396435 TGGAGAGCTCTCGGCAAAAA 59.604 50.000 32.08 12.33 43.76 1.94
229 230 8.454570 AAAAAGACAAATTAGAGGTCCGTAAA 57.545 30.769 0.00 0.00 31.99 2.01
230 231 8.454570 AAAAGACAAATTAGAGGTCCGTAAAA 57.545 30.769 0.00 0.00 31.99 1.52
231 232 8.454570 AAAGACAAATTAGAGGTCCGTAAAAA 57.545 30.769 0.00 0.00 31.99 1.94
232 233 8.631480 AAGACAAATTAGAGGTCCGTAAAAAT 57.369 30.769 0.00 0.00 31.99 1.82
233 234 9.729281 AAGACAAATTAGAGGTCCGTAAAAATA 57.271 29.630 0.00 0.00 31.99 1.40
234 235 9.901172 AGACAAATTAGAGGTCCGTAAAAATAT 57.099 29.630 0.00 0.00 31.99 1.28
243 244 9.159364 AGAGGTCCGTAAAAATATTTACTGTTC 57.841 33.333 0.01 0.00 45.67 3.18
244 245 8.851541 AGGTCCGTAAAAATATTTACTGTTCA 57.148 30.769 0.01 0.00 45.67 3.18
245 246 9.457436 AGGTCCGTAAAAATATTTACTGTTCAT 57.543 29.630 0.01 0.00 45.67 2.57
246 247 9.498307 GGTCCGTAAAAATATTTACTGTTCATG 57.502 33.333 0.01 0.00 45.67 3.07
258 259 7.633193 TTTACTGTTCATGTACTGTTTTGGT 57.367 32.000 17.65 0.00 33.15 3.67
259 260 5.751243 ACTGTTCATGTACTGTTTTGGTC 57.249 39.130 8.82 0.00 0.00 4.02
260 261 5.437060 ACTGTTCATGTACTGTTTTGGTCT 58.563 37.500 8.82 0.00 0.00 3.85
261 262 5.296780 ACTGTTCATGTACTGTTTTGGTCTG 59.703 40.000 8.82 0.00 0.00 3.51
262 263 5.432645 TGTTCATGTACTGTTTTGGTCTGA 58.567 37.500 4.01 0.00 0.00 3.27
263 264 6.061441 TGTTCATGTACTGTTTTGGTCTGAT 58.939 36.000 4.01 0.00 0.00 2.90
264 265 6.545666 TGTTCATGTACTGTTTTGGTCTGATT 59.454 34.615 4.01 0.00 0.00 2.57
265 266 7.068103 TGTTCATGTACTGTTTTGGTCTGATTT 59.932 33.333 4.01 0.00 0.00 2.17
266 267 6.969366 TCATGTACTGTTTTGGTCTGATTTG 58.031 36.000 0.00 0.00 0.00 2.32
267 268 6.545666 TCATGTACTGTTTTGGTCTGATTTGT 59.454 34.615 0.00 0.00 0.00 2.83
268 269 6.371809 TGTACTGTTTTGGTCTGATTTGTC 57.628 37.500 0.00 0.00 0.00 3.18
269 270 6.119536 TGTACTGTTTTGGTCTGATTTGTCT 58.880 36.000 0.00 0.00 0.00 3.41
270 271 6.601613 TGTACTGTTTTGGTCTGATTTGTCTT 59.398 34.615 0.00 0.00 0.00 3.01
271 272 6.530019 ACTGTTTTGGTCTGATTTGTCTTT 57.470 33.333 0.00 0.00 0.00 2.52
272 273 6.564328 ACTGTTTTGGTCTGATTTGTCTTTC 58.436 36.000 0.00 0.00 0.00 2.62
273 274 6.378280 ACTGTTTTGGTCTGATTTGTCTTTCT 59.622 34.615 0.00 0.00 0.00 2.52
274 275 7.093771 ACTGTTTTGGTCTGATTTGTCTTTCTT 60.094 33.333 0.00 0.00 0.00 2.52
275 276 7.035004 TGTTTTGGTCTGATTTGTCTTTCTTG 58.965 34.615 0.00 0.00 0.00 3.02
276 277 4.836125 TGGTCTGATTTGTCTTTCTTGC 57.164 40.909 0.00 0.00 0.00 4.01
277 278 4.464008 TGGTCTGATTTGTCTTTCTTGCT 58.536 39.130 0.00 0.00 0.00 3.91
278 279 4.276678 TGGTCTGATTTGTCTTTCTTGCTG 59.723 41.667 0.00 0.00 0.00 4.41
279 280 4.516698 GGTCTGATTTGTCTTTCTTGCTGA 59.483 41.667 0.00 0.00 0.00 4.26
280 281 5.334724 GGTCTGATTTGTCTTTCTTGCTGAG 60.335 44.000 0.00 0.00 0.00 3.35
281 282 5.468072 GTCTGATTTGTCTTTCTTGCTGAGA 59.532 40.000 0.00 0.00 0.00 3.27
282 283 5.699915 TCTGATTTGTCTTTCTTGCTGAGAG 59.300 40.000 0.00 0.00 35.37 3.20
283 284 4.214971 TGATTTGTCTTTCTTGCTGAGAGC 59.785 41.667 0.00 0.00 42.82 4.09
295 296 4.783903 GAGAGCAGCTCAGACGTC 57.216 61.111 24.64 7.70 43.38 4.34
296 297 1.138671 GAGAGCAGCTCAGACGTCC 59.861 63.158 24.64 0.00 43.38 4.79
297 298 1.590610 GAGAGCAGCTCAGACGTCCA 61.591 60.000 24.64 0.00 43.38 4.02
298 299 1.181741 AGAGCAGCTCAGACGTCCAA 61.182 55.000 24.64 0.00 32.06 3.53
299 300 0.319900 GAGCAGCTCAGACGTCCAAA 60.320 55.000 18.17 0.00 0.00 3.28
300 301 0.322975 AGCAGCTCAGACGTCCAAAT 59.677 50.000 13.01 0.00 0.00 2.32
301 302 0.445436 GCAGCTCAGACGTCCAAATG 59.555 55.000 13.01 3.85 0.00 2.32
302 303 1.941209 GCAGCTCAGACGTCCAAATGA 60.941 52.381 13.01 8.50 0.00 2.57
303 304 1.728971 CAGCTCAGACGTCCAAATGAC 59.271 52.381 13.01 4.78 40.81 3.06
304 305 1.620819 AGCTCAGACGTCCAAATGACT 59.379 47.619 13.01 6.83 42.13 3.41
305 306 2.037772 AGCTCAGACGTCCAAATGACTT 59.962 45.455 13.01 0.00 42.13 3.01
306 307 2.158449 GCTCAGACGTCCAAATGACTTG 59.842 50.000 13.01 0.20 42.13 3.16
307 308 3.653344 CTCAGACGTCCAAATGACTTGA 58.347 45.455 13.01 5.07 42.13 3.02
308 309 4.058124 CTCAGACGTCCAAATGACTTGAA 58.942 43.478 13.01 0.00 42.13 2.69
309 310 4.447290 TCAGACGTCCAAATGACTTGAAA 58.553 39.130 13.01 0.00 42.13 2.69
310 311 5.063204 TCAGACGTCCAAATGACTTGAAAT 58.937 37.500 13.01 0.00 42.13 2.17
311 312 5.530915 TCAGACGTCCAAATGACTTGAAATT 59.469 36.000 13.01 0.00 42.13 1.82
312 313 6.039270 TCAGACGTCCAAATGACTTGAAATTT 59.961 34.615 13.01 0.00 42.13 1.82
313 314 6.142798 CAGACGTCCAAATGACTTGAAATTTG 59.857 38.462 13.01 0.00 42.13 2.32
319 320 6.462073 CAAATGACTTGAAATTTGGAGCAG 57.538 37.500 0.00 0.00 39.19 4.24
320 321 4.796038 ATGACTTGAAATTTGGAGCAGG 57.204 40.909 0.00 0.00 0.00 4.85
321 322 2.297033 TGACTTGAAATTTGGAGCAGGC 59.703 45.455 0.00 0.00 0.00 4.85
322 323 1.620323 ACTTGAAATTTGGAGCAGGCC 59.380 47.619 0.00 0.00 0.00 5.19
323 324 1.897802 CTTGAAATTTGGAGCAGGCCT 59.102 47.619 0.00 0.00 0.00 5.19
324 325 1.549203 TGAAATTTGGAGCAGGCCTC 58.451 50.000 0.00 0.00 39.98 4.70
325 326 1.203038 TGAAATTTGGAGCAGGCCTCA 60.203 47.619 0.00 0.00 42.62 3.86
326 327 1.203287 GAAATTTGGAGCAGGCCTCAC 59.797 52.381 0.00 0.00 42.62 3.51
327 328 0.962356 AATTTGGAGCAGGCCTCACG 60.962 55.000 0.00 0.00 42.62 4.35
328 329 4.704833 TTGGAGCAGGCCTCACGC 62.705 66.667 0.00 3.11 42.62 5.34
330 331 4.479993 GGAGCAGGCCTCACGCAT 62.480 66.667 15.36 1.41 42.62 4.73
331 332 2.894387 GAGCAGGCCTCACGCATC 60.894 66.667 15.36 6.76 40.45 3.91
332 333 3.670637 GAGCAGGCCTCACGCATCA 62.671 63.158 15.36 0.00 40.45 3.07
333 334 2.747460 GCAGGCCTCACGCATCAA 60.747 61.111 0.00 0.00 40.31 2.57
334 335 2.334946 GCAGGCCTCACGCATCAAA 61.335 57.895 0.00 0.00 40.31 2.69
335 336 1.660560 GCAGGCCTCACGCATCAAAT 61.661 55.000 0.00 0.00 40.31 2.32
336 337 0.813184 CAGGCCTCACGCATCAAATT 59.187 50.000 0.00 0.00 40.31 1.82
337 338 0.813184 AGGCCTCACGCATCAAATTG 59.187 50.000 0.00 0.00 40.31 2.32
338 339 0.527565 GGCCTCACGCATCAAATTGT 59.472 50.000 0.00 0.00 40.31 2.71
339 340 1.468054 GGCCTCACGCATCAAATTGTC 60.468 52.381 0.00 0.00 40.31 3.18
340 341 1.470098 GCCTCACGCATCAAATTGTCT 59.530 47.619 0.00 0.00 37.47 3.41
341 342 2.677836 GCCTCACGCATCAAATTGTCTA 59.322 45.455 0.00 0.00 37.47 2.59
342 343 3.485877 GCCTCACGCATCAAATTGTCTAC 60.486 47.826 0.00 0.00 37.47 2.59
343 344 3.063997 CCTCACGCATCAAATTGTCTACC 59.936 47.826 0.00 0.00 0.00 3.18
344 345 3.935203 CTCACGCATCAAATTGTCTACCT 59.065 43.478 0.00 0.00 0.00 3.08
345 346 3.932710 TCACGCATCAAATTGTCTACCTC 59.067 43.478 0.00 0.00 0.00 3.85
346 347 3.684305 CACGCATCAAATTGTCTACCTCA 59.316 43.478 0.00 0.00 0.00 3.86
347 348 4.154015 CACGCATCAAATTGTCTACCTCAA 59.846 41.667 0.00 0.00 0.00 3.02
348 349 4.759693 ACGCATCAAATTGTCTACCTCAAA 59.240 37.500 0.00 0.00 0.00 2.69
349 350 5.240623 ACGCATCAAATTGTCTACCTCAAAA 59.759 36.000 0.00 0.00 0.00 2.44
350 351 6.148948 CGCATCAAATTGTCTACCTCAAAAA 58.851 36.000 0.00 0.00 0.00 1.94
351 352 6.808212 CGCATCAAATTGTCTACCTCAAAAAT 59.192 34.615 0.00 0.00 0.00 1.82
352 353 7.329226 CGCATCAAATTGTCTACCTCAAAAATT 59.671 33.333 0.00 0.00 0.00 1.82
353 354 8.992073 GCATCAAATTGTCTACCTCAAAAATTT 58.008 29.630 0.00 0.00 0.00 1.82
356 357 9.883142 TCAAATTGTCTACCTCAAAAATTTTGT 57.117 25.926 16.83 0.61 30.22 2.83
361 362 8.485976 TGTCTACCTCAAAAATTTTGTTTTGG 57.514 30.769 16.83 15.70 44.86 3.28
362 363 8.097662 TGTCTACCTCAAAAATTTTGTTTTGGT 58.902 29.630 16.83 19.31 44.86 3.67
363 364 8.941977 GTCTACCTCAAAAATTTTGTTTTGGTT 58.058 29.630 21.56 12.71 44.86 3.67
364 365 9.508642 TCTACCTCAAAAATTTTGTTTTGGTTT 57.491 25.926 21.56 9.79 44.86 3.27
409 410 8.844441 TTTGTTACGAATTGTTTTCTAACAGG 57.156 30.769 0.00 0.00 44.56 4.00
410 411 6.961576 TGTTACGAATTGTTTTCTAACAGGG 58.038 36.000 0.00 0.00 44.56 4.45
411 412 6.543100 TGTTACGAATTGTTTTCTAACAGGGT 59.457 34.615 0.00 0.00 44.56 4.34
412 413 5.432885 ACGAATTGTTTTCTAACAGGGTG 57.567 39.130 0.00 0.00 44.56 4.61
413 414 4.226761 CGAATTGTTTTCTAACAGGGTGC 58.773 43.478 0.00 0.00 44.56 5.01
414 415 4.261405 CGAATTGTTTTCTAACAGGGTGCA 60.261 41.667 0.00 0.00 44.56 4.57
415 416 4.853924 ATTGTTTTCTAACAGGGTGCAG 57.146 40.909 0.00 0.00 44.56 4.41
416 417 3.569194 TGTTTTCTAACAGGGTGCAGA 57.431 42.857 0.00 0.00 39.29 4.26
417 418 4.098914 TGTTTTCTAACAGGGTGCAGAT 57.901 40.909 0.00 0.00 39.29 2.90
418 419 3.820467 TGTTTTCTAACAGGGTGCAGATG 59.180 43.478 0.00 0.00 39.29 2.90
419 420 4.072131 GTTTTCTAACAGGGTGCAGATGA 58.928 43.478 0.00 0.00 34.31 2.92
420 421 3.616956 TTCTAACAGGGTGCAGATGAG 57.383 47.619 0.00 0.00 0.00 2.90
421 422 1.208052 TCTAACAGGGTGCAGATGAGC 59.792 52.381 0.00 0.00 0.00 4.26
422 423 0.253044 TAACAGGGTGCAGATGAGCC 59.747 55.000 0.00 0.00 0.00 4.70
423 424 1.495579 AACAGGGTGCAGATGAGCCT 61.496 55.000 0.00 0.00 42.19 4.58
424 425 2.996395 AGGGTGCAGATGAGCCTG 59.004 61.111 0.00 0.00 39.90 4.85
425 426 2.124403 GGGTGCAGATGAGCCTGG 60.124 66.667 0.00 0.00 34.82 4.45
426 427 2.124403 GGTGCAGATGAGCCTGGG 60.124 66.667 0.00 0.00 34.82 4.45
427 428 2.827642 GTGCAGATGAGCCTGGGC 60.828 66.667 3.00 3.00 42.33 5.36
428 429 3.332385 TGCAGATGAGCCTGGGCA 61.332 61.111 14.39 0.00 44.88 5.36
429 430 2.827642 GCAGATGAGCCTGGGCAC 60.828 66.667 14.39 8.23 44.88 5.01
443 444 3.317449 GGCACCAAAACGTCCTACT 57.683 52.632 0.00 0.00 0.00 2.57
444 445 1.154197 GGCACCAAAACGTCCTACTC 58.846 55.000 0.00 0.00 0.00 2.59
445 446 0.788391 GCACCAAAACGTCCTACTCG 59.212 55.000 0.00 0.00 0.00 4.18
446 447 1.425412 CACCAAAACGTCCTACTCGG 58.575 55.000 0.00 0.00 0.00 4.63
447 448 0.319405 ACCAAAACGTCCTACTCGGG 59.681 55.000 0.00 0.00 0.00 5.14
448 449 0.604578 CCAAAACGTCCTACTCGGGA 59.395 55.000 0.00 0.00 0.00 5.14
449 450 1.403780 CCAAAACGTCCTACTCGGGAG 60.404 57.143 0.00 0.00 35.87 4.30
450 451 1.271656 CAAAACGTCCTACTCGGGAGT 59.728 52.381 6.57 6.57 45.02 3.85
451 452 2.489329 CAAAACGTCCTACTCGGGAGTA 59.511 50.000 8.19 8.19 42.54 2.59
452 453 2.725221 AACGTCCTACTCGGGAGTAT 57.275 50.000 8.86 0.00 42.44 2.12
453 454 1.964552 ACGTCCTACTCGGGAGTATG 58.035 55.000 8.86 6.86 42.44 2.39
454 455 1.211457 ACGTCCTACTCGGGAGTATGT 59.789 52.381 8.86 0.00 42.44 2.29
455 456 2.295885 CGTCCTACTCGGGAGTATGTT 58.704 52.381 8.86 0.00 42.44 2.71
456 457 3.118261 ACGTCCTACTCGGGAGTATGTTA 60.118 47.826 8.86 0.00 42.44 2.41
457 458 3.249559 CGTCCTACTCGGGAGTATGTTAC 59.750 52.174 8.86 5.02 42.44 2.50
458 459 4.202441 GTCCTACTCGGGAGTATGTTACA 58.798 47.826 8.86 0.00 42.44 2.41
459 460 4.641989 GTCCTACTCGGGAGTATGTTACAA 59.358 45.833 8.86 0.00 42.44 2.41
460 461 5.301298 GTCCTACTCGGGAGTATGTTACAAT 59.699 44.000 8.86 0.00 42.44 2.71
461 462 5.895534 TCCTACTCGGGAGTATGTTACAATT 59.104 40.000 8.86 0.00 42.44 2.32
462 463 7.013655 GTCCTACTCGGGAGTATGTTACAATTA 59.986 40.741 8.86 0.00 42.44 1.40
463 464 7.727186 TCCTACTCGGGAGTATGTTACAATTAT 59.273 37.037 8.86 0.00 42.44 1.28
464 465 7.813148 CCTACTCGGGAGTATGTTACAATTATG 59.187 40.741 8.86 0.00 42.44 1.90
465 466 7.356089 ACTCGGGAGTATGTTACAATTATGA 57.644 36.000 0.00 0.00 40.43 2.15
466 467 7.788026 ACTCGGGAGTATGTTACAATTATGAA 58.212 34.615 0.00 0.00 40.43 2.57
467 468 8.262227 ACTCGGGAGTATGTTACAATTATGAAA 58.738 33.333 0.00 0.00 40.43 2.69
468 469 9.273016 CTCGGGAGTATGTTACAATTATGAAAT 57.727 33.333 0.00 0.00 0.00 2.17
522 523 9.498176 TGACATCATATGAATCTTATGAGTTGG 57.502 33.333 19.17 12.85 38.94 3.77
523 524 9.499479 GACATCATATGAATCTTATGAGTTGGT 57.501 33.333 19.17 14.97 38.94 3.67
524 525 9.857656 ACATCATATGAATCTTATGAGTTGGTT 57.142 29.630 19.17 4.28 38.94 3.67
540 541 9.911788 ATGAGTTGGTTATGAATCTTATGAGTT 57.088 29.630 0.00 0.00 0.00 3.01
541 542 9.166173 TGAGTTGGTTATGAATCTTATGAGTTG 57.834 33.333 0.00 0.00 0.00 3.16
542 543 8.511604 AGTTGGTTATGAATCTTATGAGTTGG 57.488 34.615 0.00 0.00 0.00 3.77
543 544 8.109634 AGTTGGTTATGAATCTTATGAGTTGGT 58.890 33.333 0.00 0.00 0.00 3.67
544 545 8.739972 GTTGGTTATGAATCTTATGAGTTGGTT 58.260 33.333 0.00 0.00 0.00 3.67
545 546 9.967451 TTGGTTATGAATCTTATGAGTTGGTTA 57.033 29.630 0.00 0.00 0.00 2.85
551 552 9.857656 ATGAATCTTATGAGTTGGTTATGACAT 57.142 29.630 0.00 0.00 0.00 3.06
556 557 9.546428 TCTTATGAGTTGGTTATGACATATGTG 57.454 33.333 14.43 0.00 0.00 3.21
557 558 6.624352 ATGAGTTGGTTATGACATATGTGC 57.376 37.500 14.43 5.76 0.00 4.57
558 559 4.881273 TGAGTTGGTTATGACATATGTGCC 59.119 41.667 14.43 7.89 0.00 5.01
559 560 4.854173 AGTTGGTTATGACATATGTGCCA 58.146 39.130 14.43 6.38 0.00 4.92
560 561 5.448654 AGTTGGTTATGACATATGTGCCAT 58.551 37.500 14.43 13.54 0.00 4.40
561 562 5.300034 AGTTGGTTATGACATATGTGCCATG 59.700 40.000 14.43 0.00 0.00 3.66
562 563 4.790937 TGGTTATGACATATGTGCCATGT 58.209 39.130 14.43 0.00 39.31 3.21
563 564 4.579753 TGGTTATGACATATGTGCCATGTG 59.420 41.667 14.43 9.34 36.76 3.21
564 565 4.821260 GGTTATGACATATGTGCCATGTGA 59.179 41.667 14.43 0.48 36.76 3.58
565 566 5.474532 GGTTATGACATATGTGCCATGTGAT 59.525 40.000 14.43 6.87 36.76 3.06
566 567 6.348786 GGTTATGACATATGTGCCATGTGATC 60.349 42.308 14.43 10.68 36.76 2.92
567 568 4.426736 TGACATATGTGCCATGTGATCT 57.573 40.909 14.43 0.00 36.76 2.75
568 569 4.784177 TGACATATGTGCCATGTGATCTT 58.216 39.130 14.43 0.00 36.76 2.40
569 570 5.927819 TGACATATGTGCCATGTGATCTTA 58.072 37.500 14.43 0.00 36.76 2.10
570 571 6.536447 TGACATATGTGCCATGTGATCTTAT 58.464 36.000 14.43 0.00 36.76 1.73
571 572 6.428771 TGACATATGTGCCATGTGATCTTATG 59.571 38.462 14.43 0.00 36.76 1.90
572 573 6.536447 ACATATGTGCCATGTGATCTTATGA 58.464 36.000 7.78 0.00 35.33 2.15
573 574 6.429078 ACATATGTGCCATGTGATCTTATGAC 59.571 38.462 7.78 1.55 35.33 3.06
574 575 4.219264 TGTGCCATGTGATCTTATGACA 57.781 40.909 10.21 3.77 0.00 3.58
575 576 4.784177 TGTGCCATGTGATCTTATGACAT 58.216 39.130 10.21 0.00 0.00 3.06
576 577 4.577283 TGTGCCATGTGATCTTATGACATG 59.423 41.667 13.54 13.54 44.36 3.21
577 578 4.818005 GTGCCATGTGATCTTATGACATGA 59.182 41.667 19.45 3.53 46.60 3.07
578 579 5.472478 GTGCCATGTGATCTTATGACATGAT 59.528 40.000 19.45 0.00 46.60 2.45
579 580 6.016527 GTGCCATGTGATCTTATGACATGATT 60.017 38.462 19.45 0.00 46.60 2.57
580 581 7.173735 GTGCCATGTGATCTTATGACATGATTA 59.826 37.037 19.45 7.04 46.60 1.75
581 582 7.720515 TGCCATGTGATCTTATGACATGATTAA 59.279 33.333 19.45 4.68 46.60 1.40
582 583 8.019669 GCCATGTGATCTTATGACATGATTAAC 58.980 37.037 19.45 5.20 46.60 2.01
583 584 9.059260 CCATGTGATCTTATGACATGATTAACA 57.941 33.333 19.45 3.62 46.60 2.41
586 587 9.447157 TGTGATCTTATGACATGATTAACAACA 57.553 29.630 0.00 0.00 0.00 3.33
617 618 9.918630 AAAAAGAATCATGTATGAGTTTTCAGG 57.081 29.630 0.74 0.00 40.64 3.86
618 619 8.868522 AAAGAATCATGTATGAGTTTTCAGGA 57.131 30.769 0.74 0.00 40.64 3.86
619 620 7.856145 AGAATCATGTATGAGTTTTCAGGAC 57.144 36.000 0.74 0.00 40.64 3.85
620 621 6.536582 AGAATCATGTATGAGTTTTCAGGACG 59.463 38.462 0.74 0.00 40.64 4.79
621 622 4.503910 TCATGTATGAGTTTTCAGGACGG 58.496 43.478 0.00 0.00 36.61 4.79
622 623 4.221924 TCATGTATGAGTTTTCAGGACGGA 59.778 41.667 0.00 0.00 36.61 4.69
623 624 4.819105 TGTATGAGTTTTCAGGACGGAT 57.181 40.909 0.00 0.00 36.61 4.18
624 625 5.925506 TGTATGAGTTTTCAGGACGGATA 57.074 39.130 0.00 0.00 36.61 2.59
625 626 5.657474 TGTATGAGTTTTCAGGACGGATAC 58.343 41.667 0.00 0.00 36.61 2.24
626 627 3.604875 TGAGTTTTCAGGACGGATACC 57.395 47.619 0.00 0.00 0.00 2.73
636 637 1.473434 GGACGGATACCCTGCTCTTTG 60.473 57.143 0.00 0.00 0.00 2.77
644 645 2.694760 CCTGCTCTTTGCTTCGCCC 61.695 63.158 0.00 0.00 43.37 6.13
666 667 0.977395 ACTTGCCTTCGGAGCTAAGT 59.023 50.000 5.32 5.32 31.34 2.24
670 671 4.404715 ACTTGCCTTCGGAGCTAAGTATTA 59.595 41.667 8.56 0.00 33.12 0.98
674 675 4.507021 GCCTTCGGAGCTAAGTATTACAAC 59.493 45.833 0.00 0.00 0.00 3.32
675 676 5.657474 CCTTCGGAGCTAAGTATTACAACA 58.343 41.667 0.00 0.00 0.00 3.33
676 677 6.103997 CCTTCGGAGCTAAGTATTACAACAA 58.896 40.000 0.00 0.00 0.00 2.83
677 678 6.035758 CCTTCGGAGCTAAGTATTACAACAAC 59.964 42.308 0.00 0.00 0.00 3.32
680 681 4.033702 GGAGCTAAGTATTACAACAACGCC 59.966 45.833 0.00 0.00 0.00 5.68
682 683 5.183228 AGCTAAGTATTACAACAACGCCAT 58.817 37.500 0.00 0.00 0.00 4.40
823 840 2.314647 CCCGCAAATCACACGTCGT 61.315 57.895 0.00 0.00 0.00 4.34
824 841 1.567537 CCGCAAATCACACGTCGTT 59.432 52.632 0.00 0.00 0.00 3.85
825 842 0.041663 CCGCAAATCACACGTCGTTT 60.042 50.000 0.00 0.00 0.00 3.60
826 843 1.034293 CGCAAATCACACGTCGTTTG 58.966 50.000 5.15 5.15 35.30 2.93
827 844 1.332465 CGCAAATCACACGTCGTTTGA 60.332 47.619 15.95 15.95 34.38 2.69
828 845 2.034076 GCAAATCACACGTCGTTTGAC 58.966 47.619 15.94 0.69 41.91 3.18
829 846 2.537931 GCAAATCACACGTCGTTTGACA 60.538 45.455 15.94 0.00 45.80 3.58
830 847 3.279950 CAAATCACACGTCGTTTGACAG 58.720 45.455 15.94 5.95 45.80 3.51
831 848 1.497991 ATCACACGTCGTTTGACAGG 58.502 50.000 15.94 0.00 45.80 4.00
832 849 0.528901 TCACACGTCGTTTGACAGGG 60.529 55.000 10.08 0.00 45.80 4.45
833 850 0.528901 CACACGTCGTTTGACAGGGA 60.529 55.000 5.59 0.00 45.80 4.20
834 851 0.176219 ACACGTCGTTTGACAGGGAA 59.824 50.000 0.00 0.00 45.80 3.97
835 852 0.580104 CACGTCGTTTGACAGGGAAC 59.420 55.000 0.00 0.00 45.80 3.62
836 853 0.176219 ACGTCGTTTGACAGGGAACA 59.824 50.000 0.00 0.00 45.80 3.18
837 854 1.202604 ACGTCGTTTGACAGGGAACAT 60.203 47.619 0.00 0.00 45.80 2.71
883 900 2.040178 CCCCACCTCGCTATAAAGTCT 58.960 52.381 0.00 0.00 0.00 3.24
952 969 4.908601 TCTGTTCTCTCTCAGACTCTCT 57.091 45.455 0.00 0.00 36.04 3.10
1094 1130 3.437795 GCGGGAGAACGACCTCGA 61.438 66.667 0.78 0.00 43.02 4.04
1110 1146 2.352915 GAGACCATCGAGCTCGCG 60.353 66.667 30.97 22.58 39.60 5.87
1158 1194 1.004918 GGCCGTAAGATCATCCCCG 60.005 63.158 0.00 0.00 43.02 5.73
1184 1225 0.460987 CCCAAGTCATCTGGCGTCTC 60.461 60.000 0.00 0.00 0.00 3.36
1237 1278 3.694072 TGATGGATCGGTGGTGAATTTTC 59.306 43.478 0.00 0.00 0.00 2.29
1238 1279 3.433306 TGGATCGGTGGTGAATTTTCT 57.567 42.857 0.00 0.00 0.00 2.52
1239 1280 3.761897 TGGATCGGTGGTGAATTTTCTT 58.238 40.909 0.00 0.00 0.00 2.52
1240 1281 3.505680 TGGATCGGTGGTGAATTTTCTTG 59.494 43.478 0.00 0.00 0.00 3.02
1241 1282 3.756434 GGATCGGTGGTGAATTTTCTTGA 59.244 43.478 0.00 0.00 0.00 3.02
1242 1283 4.399303 GGATCGGTGGTGAATTTTCTTGAT 59.601 41.667 0.00 0.00 0.00 2.57
1243 1284 5.105756 GGATCGGTGGTGAATTTTCTTGATT 60.106 40.000 0.00 0.00 0.00 2.57
1244 1285 6.094881 GGATCGGTGGTGAATTTTCTTGATTA 59.905 38.462 0.00 0.00 0.00 1.75
1245 1286 6.885952 TCGGTGGTGAATTTTCTTGATTAA 57.114 33.333 0.00 0.00 0.00 1.40
1246 1287 6.674066 TCGGTGGTGAATTTTCTTGATTAAC 58.326 36.000 0.00 0.00 0.00 2.01
1247 1288 5.861787 CGGTGGTGAATTTTCTTGATTAACC 59.138 40.000 0.00 0.00 38.16 2.85
1248 1289 6.294508 CGGTGGTGAATTTTCTTGATTAACCT 60.295 38.462 5.27 0.00 38.39 3.50
1249 1290 6.868339 GGTGGTGAATTTTCTTGATTAACCTG 59.132 38.462 5.27 0.00 38.39 4.00
1250 1291 6.366061 GTGGTGAATTTTCTTGATTAACCTGC 59.634 38.462 5.27 0.00 38.39 4.85
1251 1292 5.869344 GGTGAATTTTCTTGATTAACCTGCC 59.131 40.000 0.00 0.00 35.79 4.85
1252 1293 6.295292 GGTGAATTTTCTTGATTAACCTGCCT 60.295 38.462 0.00 0.00 35.79 4.75
1253 1294 6.587608 GTGAATTTTCTTGATTAACCTGCCTG 59.412 38.462 0.00 0.00 0.00 4.85
1254 1295 6.493115 TGAATTTTCTTGATTAACCTGCCTGA 59.507 34.615 0.00 0.00 0.00 3.86
1255 1296 5.705609 TTTTCTTGATTAACCTGCCTGAC 57.294 39.130 0.00 0.00 0.00 3.51
1256 1297 2.972625 TCTTGATTAACCTGCCTGACG 58.027 47.619 0.00 0.00 0.00 4.35
1257 1298 2.009774 CTTGATTAACCTGCCTGACGG 58.990 52.381 0.00 0.00 0.00 4.79
1258 1299 1.271856 TGATTAACCTGCCTGACGGA 58.728 50.000 0.00 0.00 0.00 4.69
1259 1300 1.837439 TGATTAACCTGCCTGACGGAT 59.163 47.619 0.00 0.00 0.00 4.18
1260 1301 2.158957 TGATTAACCTGCCTGACGGATC 60.159 50.000 0.00 0.00 0.00 3.36
1261 1302 0.174845 TTAACCTGCCTGACGGATCG 59.825 55.000 0.00 0.00 0.00 3.69
1262 1303 1.672854 TAACCTGCCTGACGGATCGG 61.673 60.000 0.00 0.00 0.00 4.18
1263 1304 3.461773 CCTGCCTGACGGATCGGT 61.462 66.667 5.49 5.49 0.00 4.69
1264 1305 2.202797 CTGCCTGACGGATCGGTG 60.203 66.667 11.07 0.00 0.00 4.94
1265 1306 3.723235 CTGCCTGACGGATCGGTGG 62.723 68.421 11.07 7.94 0.00 4.61
1266 1307 3.771160 GCCTGACGGATCGGTGGT 61.771 66.667 11.07 0.00 0.00 4.16
1267 1308 2.184322 CCTGACGGATCGGTGGTG 59.816 66.667 11.07 0.92 0.00 4.17
1268 1309 2.348104 CCTGACGGATCGGTGGTGA 61.348 63.158 11.07 0.00 0.00 4.02
1269 1310 1.589630 CTGACGGATCGGTGGTGAA 59.410 57.895 11.07 0.00 0.00 3.18
1270 1311 0.175760 CTGACGGATCGGTGGTGAAT 59.824 55.000 11.07 0.00 0.00 2.57
1271 1312 0.611200 TGACGGATCGGTGGTGAATT 59.389 50.000 11.07 0.00 0.00 2.17
1272 1313 1.002659 TGACGGATCGGTGGTGAATTT 59.997 47.619 11.07 0.00 0.00 1.82
1273 1314 2.081462 GACGGATCGGTGGTGAATTTT 58.919 47.619 11.07 0.00 0.00 1.82
1274 1315 2.081462 ACGGATCGGTGGTGAATTTTC 58.919 47.619 4.94 0.00 0.00 2.29
1275 1316 2.290071 ACGGATCGGTGGTGAATTTTCT 60.290 45.455 4.94 0.00 0.00 2.52
1276 1317 2.747446 CGGATCGGTGGTGAATTTTCTT 59.253 45.455 0.00 0.00 0.00 2.52
1277 1318 3.426159 CGGATCGGTGGTGAATTTTCTTG 60.426 47.826 0.00 0.00 0.00 3.02
1278 1319 3.756434 GGATCGGTGGTGAATTTTCTTGA 59.244 43.478 0.00 0.00 0.00 3.02
1279 1320 4.399303 GGATCGGTGGTGAATTTTCTTGAT 59.601 41.667 0.00 0.00 0.00 2.57
1280 1321 5.105756 GGATCGGTGGTGAATTTTCTTGATT 60.106 40.000 0.00 0.00 0.00 2.57
1281 1322 6.094881 GGATCGGTGGTGAATTTTCTTGATTA 59.905 38.462 0.00 0.00 0.00 1.75
1282 1323 6.885952 TCGGTGGTGAATTTTCTTGATTAA 57.114 33.333 0.00 0.00 0.00 1.40
1283 1324 6.674066 TCGGTGGTGAATTTTCTTGATTAAC 58.326 36.000 0.00 0.00 0.00 2.01
1284 1325 5.861787 CGGTGGTGAATTTTCTTGATTAACC 59.138 40.000 0.00 0.00 38.16 2.85
1285 1326 6.294508 CGGTGGTGAATTTTCTTGATTAACCT 60.295 38.462 5.27 0.00 38.39 3.50
1286 1327 6.868339 GGTGGTGAATTTTCTTGATTAACCTG 59.132 38.462 5.27 0.00 38.39 4.00
1287 1328 6.366061 GTGGTGAATTTTCTTGATTAACCTGC 59.634 38.462 5.27 0.00 38.39 4.85
1288 1329 5.869344 GGTGAATTTTCTTGATTAACCTGCC 59.131 40.000 0.00 0.00 35.79 4.85
1289 1330 6.295292 GGTGAATTTTCTTGATTAACCTGCCT 60.295 38.462 0.00 0.00 35.79 4.75
1290 1331 6.587608 GTGAATTTTCTTGATTAACCTGCCTG 59.412 38.462 0.00 0.00 0.00 4.85
1291 1332 6.493115 TGAATTTTCTTGATTAACCTGCCTGA 59.507 34.615 0.00 0.00 0.00 3.86
1292 1333 5.705609 TTTTCTTGATTAACCTGCCTGAC 57.294 39.130 0.00 0.00 0.00 3.51
1293 1334 2.972625 TCTTGATTAACCTGCCTGACG 58.027 47.619 0.00 0.00 0.00 4.35
1294 1335 2.009774 CTTGATTAACCTGCCTGACGG 58.990 52.381 0.00 0.00 0.00 4.79
1295 1336 1.271856 TGATTAACCTGCCTGACGGA 58.728 50.000 0.00 0.00 0.00 4.69
1296 1337 1.837439 TGATTAACCTGCCTGACGGAT 59.163 47.619 0.00 0.00 0.00 4.18
1297 1338 2.158957 TGATTAACCTGCCTGACGGATC 60.159 50.000 0.00 0.00 0.00 3.36
1298 1339 0.174845 TTAACCTGCCTGACGGATCG 59.825 55.000 0.00 0.00 0.00 3.69
1299 1340 1.672854 TAACCTGCCTGACGGATCGG 61.673 60.000 0.00 0.00 0.00 4.18
1300 1341 3.461773 CCTGCCTGACGGATCGGT 61.462 66.667 5.49 5.49 0.00 4.69
1301 1342 2.202797 CTGCCTGACGGATCGGTG 60.203 66.667 11.07 0.00 0.00 4.94
1302 1343 3.723235 CTGCCTGACGGATCGGTGG 62.723 68.421 11.07 7.94 0.00 4.61
1551 1592 0.884704 GAACCGCTCAAGCTTGTGGA 60.885 55.000 29.00 12.57 39.32 4.02
1568 1612 0.178990 GGATGGGGCCTATCCAACAC 60.179 60.000 36.26 14.48 42.93 3.32
1626 1672 0.610232 AACCTGCTTCCTGCCATGTC 60.610 55.000 0.00 0.00 42.00 3.06
1662 1712 7.462109 CAAGTATTTTGCTTGTTTGCACTAA 57.538 32.000 0.00 0.00 43.20 2.24
1768 1851 5.507985 CCACCTGGAAGAGAAAAATTCACAC 60.508 44.000 0.00 0.00 37.39 3.82
1789 1872 9.061435 TCACACATAACACAAGATTGTTAATCA 57.939 29.630 0.00 0.00 43.47 2.57
1790 1873 9.117145 CACACATAACACAAGATTGTTAATCAC 57.883 33.333 0.00 0.00 43.47 3.06
1791 1874 9.066892 ACACATAACACAAGATTGTTAATCACT 57.933 29.630 0.00 0.00 43.47 3.41
1792 1875 9.897744 CACATAACACAAGATTGTTAATCACTT 57.102 29.630 0.00 0.00 43.47 3.16
1796 1879 7.744087 ACACAAGATTGTTAATCACTTAGCA 57.256 32.000 0.00 0.00 39.91 3.49
1797 1880 8.165239 ACACAAGATTGTTAATCACTTAGCAA 57.835 30.769 0.00 0.00 40.74 3.91
1798 1881 8.292448 ACACAAGATTGTTAATCACTTAGCAAG 58.708 33.333 0.00 0.00 40.11 4.01
1799 1882 8.506437 CACAAGATTGTTAATCACTTAGCAAGA 58.494 33.333 0.00 0.00 40.11 3.02
1800 1883 8.725148 ACAAGATTGTTAATCACTTAGCAAGAG 58.275 33.333 4.56 0.00 40.11 2.85
1801 1884 8.939929 CAAGATTGTTAATCACTTAGCAAGAGA 58.060 33.333 4.56 1.76 40.11 3.10
1802 1885 9.507329 AAGATTGTTAATCACTTAGCAAGAGAA 57.493 29.630 4.56 0.00 40.11 2.87
1803 1886 9.507329 AGATTGTTAATCACTTAGCAAGAGAAA 57.493 29.630 4.56 0.00 40.11 2.52
1812 1895 8.268850 TCACTTAGCAAGAGAAAAATATCACC 57.731 34.615 3.37 0.00 0.00 4.02
1813 1896 8.103305 TCACTTAGCAAGAGAAAAATATCACCT 58.897 33.333 3.37 0.00 0.00 4.00
1814 1897 8.180267 CACTTAGCAAGAGAAAAATATCACCTG 58.820 37.037 3.37 0.00 0.00 4.00
1815 1898 7.885399 ACTTAGCAAGAGAAAAATATCACCTGT 59.115 33.333 3.37 0.00 0.00 4.00
1816 1899 9.383519 CTTAGCAAGAGAAAAATATCACCTGTA 57.616 33.333 0.00 0.00 0.00 2.74
1817 1900 9.733556 TTAGCAAGAGAAAAATATCACCTGTAA 57.266 29.630 0.00 0.00 0.00 2.41
1818 1901 8.273780 AGCAAGAGAAAAATATCACCTGTAAG 57.726 34.615 0.00 0.00 0.00 2.34
1819 1902 8.103305 AGCAAGAGAAAAATATCACCTGTAAGA 58.897 33.333 0.00 0.00 34.07 2.10
1820 1903 8.394121 GCAAGAGAAAAATATCACCTGTAAGAG 58.606 37.037 0.00 0.00 34.07 2.85
1821 1904 9.658799 CAAGAGAAAAATATCACCTGTAAGAGA 57.341 33.333 0.00 0.00 34.07 3.10
1833 1916 9.739276 ATCACCTGTAAGAGAAATATTCACAAA 57.261 29.630 0.00 0.00 34.07 2.83
1834 1917 9.739276 TCACCTGTAAGAGAAATATTCACAAAT 57.261 29.630 0.00 0.00 34.07 2.32
1851 1934 9.985730 ATTCACAAATAACACAAGATTGTTGAT 57.014 25.926 0.00 0.00 40.04 2.57
1852 1935 9.462174 TTCACAAATAACACAAGATTGTTGATC 57.538 29.630 0.00 0.00 40.04 2.92
1865 1948 6.906659 AGATTGTTGATCACTAAAGCAAGTG 58.093 36.000 0.00 7.37 46.78 3.16
1878 1961 2.676748 AGCAAGTGAAAAATCCCACCA 58.323 42.857 0.00 0.00 34.00 4.17
1917 2000 9.985730 AATCACAAATAACACAAGATTGTTGAT 57.014 25.926 0.00 0.00 40.04 2.57
1918 2001 9.630098 ATCACAAATAACACAAGATTGTTGATC 57.370 29.630 0.00 0.00 40.04 2.92
1919 2002 8.628280 TCACAAATAACACAAGATTGTTGATCA 58.372 29.630 0.00 0.00 40.04 2.92
1920 2003 8.693504 CACAAATAACACAAGATTGTTGATCAC 58.306 33.333 0.00 0.00 40.04 3.06
1921 2004 7.867403 ACAAATAACACAAGATTGTTGATCACC 59.133 33.333 0.00 0.00 40.04 4.02
1922 2005 7.523293 AATAACACAAGATTGTTGATCACCA 57.477 32.000 0.00 0.00 40.04 4.17
1923 2006 5.850557 AACACAAGATTGTTGATCACCAA 57.149 34.783 8.23 8.23 39.91 3.67
1924 2007 5.850557 ACACAAGATTGTTGATCACCAAA 57.149 34.783 9.92 0.00 39.91 3.28
1925 2008 5.835257 ACACAAGATTGTTGATCACCAAAG 58.165 37.500 9.92 3.66 39.91 2.77
1926 2009 4.682860 CACAAGATTGTTGATCACCAAAGC 59.317 41.667 9.92 5.57 39.91 3.51
1927 2010 4.341806 ACAAGATTGTTGATCACCAAAGCA 59.658 37.500 9.92 0.00 38.47 3.91
1928 2011 5.163426 ACAAGATTGTTGATCACCAAAGCAA 60.163 36.000 9.92 2.76 38.47 3.91
1929 2012 5.130292 AGATTGTTGATCACCAAAGCAAG 57.870 39.130 9.92 0.00 37.22 4.01
1930 2013 4.586001 AGATTGTTGATCACCAAAGCAAGT 59.414 37.500 9.92 0.00 37.22 3.16
1938 2021 6.347696 TGATCACCAAAGCAAGTGAAAAATT 58.652 32.000 0.00 0.00 45.54 1.82
1943 2026 4.273235 CCAAAGCAAGTGAAAAATTCCACC 59.727 41.667 0.00 0.00 34.00 4.61
1970 2053 7.860373 TGGAAGAGAAAAATCACAAATAACACG 59.140 33.333 0.00 0.00 0.00 4.49
1976 2059 9.398170 AGAAAAATCACAAATAACACGAGATTG 57.602 29.630 0.00 0.00 0.00 2.67
2193 2276 9.888878 CAATCAACATATGTCACATCCTAAATC 57.111 33.333 9.23 0.00 0.00 2.17
2325 2408 2.279582 AAATCCACGCTAGAGTCACG 57.720 50.000 0.00 0.00 0.00 4.35
2479 2562 4.331717 TCTTCTTTCAACTGTGAAACCGAC 59.668 41.667 0.00 0.00 46.48 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.503428 ACTCCTTCCATTCACAGATATAAGAT 57.497 34.615 0.00 0.00 0.00 2.40
2 3 7.921041 ACTCCTTCCATTCACAGATATAAGA 57.079 36.000 0.00 0.00 0.00 2.10
3 4 9.650539 CATACTCCTTCCATTCACAGATATAAG 57.349 37.037 0.00 0.00 0.00 1.73
4 5 8.597167 CCATACTCCTTCCATTCACAGATATAA 58.403 37.037 0.00 0.00 0.00 0.98
5 6 7.180946 CCCATACTCCTTCCATTCACAGATATA 59.819 40.741 0.00 0.00 0.00 0.86
6 7 6.013032 CCCATACTCCTTCCATTCACAGATAT 60.013 42.308 0.00 0.00 0.00 1.63
7 8 5.307976 CCCATACTCCTTCCATTCACAGATA 59.692 44.000 0.00 0.00 0.00 1.98
8 9 4.103785 CCCATACTCCTTCCATTCACAGAT 59.896 45.833 0.00 0.00 0.00 2.90
9 10 3.455910 CCCATACTCCTTCCATTCACAGA 59.544 47.826 0.00 0.00 0.00 3.41
10 11 3.455910 TCCCATACTCCTTCCATTCACAG 59.544 47.826 0.00 0.00 0.00 3.66
11 12 3.459828 TCCCATACTCCTTCCATTCACA 58.540 45.455 0.00 0.00 0.00 3.58
12 13 4.503714 TTCCCATACTCCTTCCATTCAC 57.496 45.455 0.00 0.00 0.00 3.18
13 14 5.528600 TTTTCCCATACTCCTTCCATTCA 57.471 39.130 0.00 0.00 0.00 2.57
14 15 5.536538 GGATTTTCCCATACTCCTTCCATTC 59.463 44.000 0.00 0.00 0.00 2.67
15 16 5.043432 TGGATTTTCCCATACTCCTTCCATT 60.043 40.000 0.00 0.00 35.03 3.16
16 17 4.482025 TGGATTTTCCCATACTCCTTCCAT 59.518 41.667 0.00 0.00 35.03 3.41
17 18 3.855599 TGGATTTTCCCATACTCCTTCCA 59.144 43.478 0.00 0.00 35.03 3.53
18 19 4.519906 TGGATTTTCCCATACTCCTTCC 57.480 45.455 0.00 0.00 35.03 3.46
19 20 5.946486 AGATGGATTTTCCCATACTCCTTC 58.054 41.667 0.00 0.00 46.34 3.46
20 21 5.674035 AGAGATGGATTTTCCCATACTCCTT 59.326 40.000 0.55 0.00 46.34 3.36
21 22 5.072872 CAGAGATGGATTTTCCCATACTCCT 59.927 44.000 0.55 0.00 46.34 3.69
22 23 5.312079 CAGAGATGGATTTTCCCATACTCC 58.688 45.833 0.55 0.00 46.34 3.85
23 24 4.759183 GCAGAGATGGATTTTCCCATACTC 59.241 45.833 0.00 0.00 46.34 2.59
24 25 4.166725 TGCAGAGATGGATTTTCCCATACT 59.833 41.667 0.00 0.00 46.34 2.12
25 26 4.276926 GTGCAGAGATGGATTTTCCCATAC 59.723 45.833 0.00 0.00 46.34 2.39
26 27 4.464008 GTGCAGAGATGGATTTTCCCATA 58.536 43.478 0.00 0.00 46.34 2.74
28 29 2.621407 GGTGCAGAGATGGATTTTCCCA 60.621 50.000 0.00 0.00 41.05 4.37
29 30 2.027385 GGTGCAGAGATGGATTTTCCC 58.973 52.381 0.00 0.00 35.03 3.97
30 31 2.027385 GGGTGCAGAGATGGATTTTCC 58.973 52.381 0.00 0.00 36.96 3.13
31 32 1.672881 CGGGTGCAGAGATGGATTTTC 59.327 52.381 0.00 0.00 0.00 2.29
32 33 1.281867 TCGGGTGCAGAGATGGATTTT 59.718 47.619 0.00 0.00 0.00 1.82
33 34 0.911769 TCGGGTGCAGAGATGGATTT 59.088 50.000 0.00 0.00 0.00 2.17
34 35 0.467384 CTCGGGTGCAGAGATGGATT 59.533 55.000 0.00 0.00 37.93 3.01
35 36 2.037620 GCTCGGGTGCAGAGATGGAT 62.038 60.000 5.67 0.00 37.93 3.41
36 37 2.725312 GCTCGGGTGCAGAGATGGA 61.725 63.158 5.67 0.00 37.93 3.41
37 38 2.202987 GCTCGGGTGCAGAGATGG 60.203 66.667 5.67 0.00 37.93 3.51
38 39 1.227205 GAGCTCGGGTGCAGAGATG 60.227 63.158 0.00 0.00 37.93 2.90
39 40 1.047596 ATGAGCTCGGGTGCAGAGAT 61.048 55.000 9.64 0.00 37.93 2.75
40 41 1.670949 GATGAGCTCGGGTGCAGAGA 61.671 60.000 9.64 0.00 37.93 3.10
41 42 1.227205 GATGAGCTCGGGTGCAGAG 60.227 63.158 9.64 0.00 38.68 3.35
42 43 1.683707 AGATGAGCTCGGGTGCAGA 60.684 57.895 9.64 0.00 34.99 4.26
43 44 1.521010 CAGATGAGCTCGGGTGCAG 60.521 63.158 9.64 0.00 34.99 4.41
44 45 2.580815 CAGATGAGCTCGGGTGCA 59.419 61.111 9.64 0.00 34.99 4.57
45 46 2.894387 GCAGATGAGCTCGGGTGC 60.894 66.667 15.62 15.62 0.00 5.01
46 47 1.812922 GTGCAGATGAGCTCGGGTG 60.813 63.158 9.64 6.93 34.99 4.61
47 48 2.581354 GTGCAGATGAGCTCGGGT 59.419 61.111 9.64 0.00 34.99 5.28
48 49 2.202987 GGTGCAGATGAGCTCGGG 60.203 66.667 9.64 0.00 34.99 5.14
49 50 2.202987 GGGTGCAGATGAGCTCGG 60.203 66.667 9.64 0.00 34.99 4.63
50 51 2.202987 GGGGTGCAGATGAGCTCG 60.203 66.667 9.64 0.00 34.99 5.03
51 52 2.191641 GGGGGTGCAGATGAGCTC 59.808 66.667 6.82 6.82 34.99 4.09
52 53 3.790437 CGGGGGTGCAGATGAGCT 61.790 66.667 0.00 0.00 34.99 4.09
54 55 1.971505 TTAGCGGGGGTGCAGATGAG 61.972 60.000 0.00 0.00 37.31 2.90
55 56 1.992834 TTAGCGGGGGTGCAGATGA 60.993 57.895 0.00 0.00 37.31 2.92
56 57 1.819632 GTTAGCGGGGGTGCAGATG 60.820 63.158 0.00 0.00 37.31 2.90
57 58 2.590092 GTTAGCGGGGGTGCAGAT 59.410 61.111 0.00 0.00 37.31 2.90
58 59 4.077184 CGTTAGCGGGGGTGCAGA 62.077 66.667 0.00 0.00 37.31 4.26
59 60 3.599285 TTCGTTAGCGGGGGTGCAG 62.599 63.158 0.00 0.00 38.89 4.41
60 61 2.677765 TTTTCGTTAGCGGGGGTGCA 62.678 55.000 0.00 0.00 38.89 4.57
61 62 1.517210 TTTTTCGTTAGCGGGGGTGC 61.517 55.000 0.00 0.00 38.89 5.01
62 63 2.631427 TTTTTCGTTAGCGGGGGTG 58.369 52.632 0.00 0.00 38.89 4.61
122 123 2.570415 TGGTCTACCGCATGGAAAAA 57.430 45.000 0.00 0.00 39.43 1.94
123 124 2.799126 ATGGTCTACCGCATGGAAAA 57.201 45.000 0.00 0.00 39.43 2.29
124 125 2.752354 CAAATGGTCTACCGCATGGAAA 59.248 45.455 0.00 0.00 39.43 3.13
125 126 2.026729 TCAAATGGTCTACCGCATGGAA 60.027 45.455 0.00 0.00 39.43 3.53
126 127 1.557371 TCAAATGGTCTACCGCATGGA 59.443 47.619 0.00 0.00 39.43 3.41
127 128 2.036958 TCAAATGGTCTACCGCATGG 57.963 50.000 0.00 0.00 39.43 3.66
128 129 2.287188 GCATCAAATGGTCTACCGCATG 60.287 50.000 0.00 0.00 39.43 4.06
129 130 1.949525 GCATCAAATGGTCTACCGCAT 59.050 47.619 0.00 0.00 39.43 4.73
130 131 1.378531 GCATCAAATGGTCTACCGCA 58.621 50.000 0.00 0.00 39.43 5.69
131 132 0.304705 CGCATCAAATGGTCTACCGC 59.695 55.000 0.00 0.00 39.43 5.68
132 133 1.327460 CACGCATCAAATGGTCTACCG 59.673 52.381 0.00 0.00 39.43 4.02
133 134 2.609459 CTCACGCATCAAATGGTCTACC 59.391 50.000 0.00 0.00 0.00 3.18
134 135 2.609459 CCTCACGCATCAAATGGTCTAC 59.391 50.000 0.00 0.00 0.00 2.59
135 136 2.236146 ACCTCACGCATCAAATGGTCTA 59.764 45.455 0.00 0.00 0.00 2.59
136 137 1.003580 ACCTCACGCATCAAATGGTCT 59.996 47.619 0.00 0.00 0.00 3.85
137 138 1.453155 ACCTCACGCATCAAATGGTC 58.547 50.000 0.00 0.00 0.00 4.02
138 139 1.812571 GAACCTCACGCATCAAATGGT 59.187 47.619 0.00 0.00 0.00 3.55
139 140 1.202065 CGAACCTCACGCATCAAATGG 60.202 52.381 0.00 0.00 0.00 3.16
140 141 1.731709 TCGAACCTCACGCATCAAATG 59.268 47.619 0.00 0.00 0.00 2.32
141 142 2.093306 TCGAACCTCACGCATCAAAT 57.907 45.000 0.00 0.00 0.00 2.32
142 143 1.999735 GATCGAACCTCACGCATCAAA 59.000 47.619 0.00 0.00 0.00 2.69
143 144 1.067213 TGATCGAACCTCACGCATCAA 60.067 47.619 0.00 0.00 30.90 2.57
144 145 0.530288 TGATCGAACCTCACGCATCA 59.470 50.000 0.00 0.00 0.00 3.07
145 146 1.640428 TTGATCGAACCTCACGCATC 58.360 50.000 0.00 0.00 0.00 3.91
146 147 2.093306 TTTGATCGAACCTCACGCAT 57.907 45.000 0.00 0.00 0.00 4.73
147 148 2.093306 ATTTGATCGAACCTCACGCA 57.907 45.000 0.00 0.00 0.00 5.24
148 149 3.471495 AAATTTGATCGAACCTCACGC 57.529 42.857 0.00 0.00 0.00 5.34
149 150 5.029650 TGAAAATTTGATCGAACCTCACG 57.970 39.130 0.00 0.00 0.00 4.35
150 151 7.594758 TGATTTGAAAATTTGATCGAACCTCAC 59.405 33.333 0.00 0.00 0.00 3.51
151 152 7.656412 TGATTTGAAAATTTGATCGAACCTCA 58.344 30.769 0.00 0.00 0.00 3.86
152 153 8.693542 ATGATTTGAAAATTTGATCGAACCTC 57.306 30.769 0.00 0.00 0.00 3.85
153 154 9.492973 AAATGATTTGAAAATTTGATCGAACCT 57.507 25.926 0.00 0.00 0.00 3.50
154 155 9.532697 CAAATGATTTGAAAATTTGATCGAACC 57.467 29.630 12.37 0.00 41.64 3.62
170 171 6.034591 GCTCTCCAGATGTTCAAATGATTTG 58.965 40.000 11.54 11.54 41.96 2.32
171 172 5.950549 AGCTCTCCAGATGTTCAAATGATTT 59.049 36.000 0.00 0.00 0.00 2.17
172 173 5.507637 AGCTCTCCAGATGTTCAAATGATT 58.492 37.500 0.00 0.00 0.00 2.57
173 174 5.104444 AGAGCTCTCCAGATGTTCAAATGAT 60.104 40.000 11.45 0.00 0.00 2.45
174 175 4.224594 AGAGCTCTCCAGATGTTCAAATGA 59.775 41.667 11.45 0.00 0.00 2.57
175 176 4.515361 AGAGCTCTCCAGATGTTCAAATG 58.485 43.478 11.45 0.00 0.00 2.32
176 177 4.680172 CGAGAGCTCTCCAGATGTTCAAAT 60.680 45.833 32.86 0.00 39.79 2.32
177 178 3.367806 CGAGAGCTCTCCAGATGTTCAAA 60.368 47.826 32.86 0.00 39.79 2.69
178 179 2.165234 CGAGAGCTCTCCAGATGTTCAA 59.835 50.000 32.86 0.00 39.79 2.69
179 180 1.747924 CGAGAGCTCTCCAGATGTTCA 59.252 52.381 32.86 0.00 39.79 3.18
180 181 1.066908 CCGAGAGCTCTCCAGATGTTC 59.933 57.143 32.86 10.53 39.79 3.18
181 182 1.110442 CCGAGAGCTCTCCAGATGTT 58.890 55.000 32.86 1.80 39.79 2.71
182 183 1.391157 GCCGAGAGCTCTCCAGATGT 61.391 60.000 32.86 2.59 39.79 3.06
183 184 1.363443 GCCGAGAGCTCTCCAGATG 59.637 63.158 32.86 20.34 39.79 2.90
184 185 0.685785 TTGCCGAGAGCTCTCCAGAT 60.686 55.000 32.86 4.21 44.23 2.90
185 186 0.900182 TTTGCCGAGAGCTCTCCAGA 60.900 55.000 32.86 20.19 44.23 3.86
186 187 0.036952 TTTTGCCGAGAGCTCTCCAG 60.037 55.000 32.86 25.79 44.23 3.86
187 188 0.396435 TTTTTGCCGAGAGCTCTCCA 59.604 50.000 32.86 24.27 44.23 3.86
188 189 3.233355 TTTTTGCCGAGAGCTCTCC 57.767 52.632 32.86 22.16 44.23 3.71
204 205 8.454570 TTTACGGACCTCTAATTTGTCTTTTT 57.545 30.769 0.00 0.00 0.00 1.94
205 206 8.454570 TTTTACGGACCTCTAATTTGTCTTTT 57.545 30.769 0.00 0.00 0.00 2.27
206 207 8.454570 TTTTTACGGACCTCTAATTTGTCTTT 57.545 30.769 0.00 0.00 0.00 2.52
207 208 8.631480 ATTTTTACGGACCTCTAATTTGTCTT 57.369 30.769 0.00 0.00 0.00 3.01
208 209 9.901172 ATATTTTTACGGACCTCTAATTTGTCT 57.099 29.630 0.00 0.00 0.00 3.41
232 233 9.344772 ACCAAAACAGTACATGAACAGTAAATA 57.655 29.630 0.00 0.00 0.00 1.40
233 234 8.232913 ACCAAAACAGTACATGAACAGTAAAT 57.767 30.769 0.00 0.00 0.00 1.40
234 235 7.554835 AGACCAAAACAGTACATGAACAGTAAA 59.445 33.333 0.00 0.00 0.00 2.01
235 236 7.011950 CAGACCAAAACAGTACATGAACAGTAA 59.988 37.037 0.00 0.00 0.00 2.24
236 237 6.481976 CAGACCAAAACAGTACATGAACAGTA 59.518 38.462 0.00 0.00 0.00 2.74
237 238 5.296780 CAGACCAAAACAGTACATGAACAGT 59.703 40.000 0.00 0.00 0.00 3.55
238 239 5.527214 TCAGACCAAAACAGTACATGAACAG 59.473 40.000 0.00 0.00 0.00 3.16
239 240 5.432645 TCAGACCAAAACAGTACATGAACA 58.567 37.500 0.00 0.00 0.00 3.18
240 241 6.560253 ATCAGACCAAAACAGTACATGAAC 57.440 37.500 0.00 0.00 0.00 3.18
241 242 7.068103 ACAAATCAGACCAAAACAGTACATGAA 59.932 33.333 0.00 0.00 0.00 2.57
242 243 6.545666 ACAAATCAGACCAAAACAGTACATGA 59.454 34.615 0.00 0.00 0.00 3.07
243 244 6.738114 ACAAATCAGACCAAAACAGTACATG 58.262 36.000 0.00 0.00 0.00 3.21
244 245 6.772716 AGACAAATCAGACCAAAACAGTACAT 59.227 34.615 0.00 0.00 0.00 2.29
245 246 6.119536 AGACAAATCAGACCAAAACAGTACA 58.880 36.000 0.00 0.00 0.00 2.90
246 247 6.619801 AGACAAATCAGACCAAAACAGTAC 57.380 37.500 0.00 0.00 0.00 2.73
247 248 7.556275 AGAAAGACAAATCAGACCAAAACAGTA 59.444 33.333 0.00 0.00 0.00 2.74
248 249 6.378280 AGAAAGACAAATCAGACCAAAACAGT 59.622 34.615 0.00 0.00 0.00 3.55
249 250 6.799512 AGAAAGACAAATCAGACCAAAACAG 58.200 36.000 0.00 0.00 0.00 3.16
250 251 6.773976 AGAAAGACAAATCAGACCAAAACA 57.226 33.333 0.00 0.00 0.00 2.83
251 252 6.019559 GCAAGAAAGACAAATCAGACCAAAAC 60.020 38.462 0.00 0.00 0.00 2.43
252 253 6.042143 GCAAGAAAGACAAATCAGACCAAAA 58.958 36.000 0.00 0.00 0.00 2.44
253 254 5.360714 AGCAAGAAAGACAAATCAGACCAAA 59.639 36.000 0.00 0.00 0.00 3.28
254 255 4.889409 AGCAAGAAAGACAAATCAGACCAA 59.111 37.500 0.00 0.00 0.00 3.67
255 256 4.276678 CAGCAAGAAAGACAAATCAGACCA 59.723 41.667 0.00 0.00 0.00 4.02
256 257 4.516698 TCAGCAAGAAAGACAAATCAGACC 59.483 41.667 0.00 0.00 0.00 3.85
257 258 5.468072 TCTCAGCAAGAAAGACAAATCAGAC 59.532 40.000 0.00 0.00 0.00 3.51
258 259 5.614308 TCTCAGCAAGAAAGACAAATCAGA 58.386 37.500 0.00 0.00 0.00 3.27
259 260 5.617308 GCTCTCAGCAAGAAAGACAAATCAG 60.617 44.000 0.00 0.00 41.89 2.90
260 261 4.214971 GCTCTCAGCAAGAAAGACAAATCA 59.785 41.667 0.00 0.00 41.89 2.57
261 262 4.721142 GCTCTCAGCAAGAAAGACAAATC 58.279 43.478 0.00 0.00 41.89 2.17
262 263 4.762956 GCTCTCAGCAAGAAAGACAAAT 57.237 40.909 0.00 0.00 41.89 2.32
278 279 1.138671 GGACGTCTGAGCTGCTCTC 59.861 63.158 28.04 17.26 42.23 3.20
279 280 1.181741 TTGGACGTCTGAGCTGCTCT 61.182 55.000 28.04 9.57 0.00 4.09
280 281 0.319900 TTTGGACGTCTGAGCTGCTC 60.320 55.000 22.38 22.38 0.00 4.26
281 282 0.322975 ATTTGGACGTCTGAGCTGCT 59.677 50.000 16.46 0.00 0.00 4.24
282 283 0.445436 CATTTGGACGTCTGAGCTGC 59.555 55.000 16.46 0.00 0.00 5.25
283 284 1.728971 GTCATTTGGACGTCTGAGCTG 59.271 52.381 16.46 7.34 36.65 4.24
284 285 2.086054 GTCATTTGGACGTCTGAGCT 57.914 50.000 16.46 0.00 36.65 4.09
296 297 5.407387 CCTGCTCCAAATTTCAAGTCATTTG 59.593 40.000 0.00 0.00 39.25 2.32
297 298 5.544650 CCTGCTCCAAATTTCAAGTCATTT 58.455 37.500 0.00 0.00 0.00 2.32
298 299 4.562143 GCCTGCTCCAAATTTCAAGTCATT 60.562 41.667 0.00 0.00 0.00 2.57
299 300 3.056322 GCCTGCTCCAAATTTCAAGTCAT 60.056 43.478 0.00 0.00 0.00 3.06
300 301 2.297033 GCCTGCTCCAAATTTCAAGTCA 59.703 45.455 0.00 0.00 0.00 3.41
301 302 2.353109 GGCCTGCTCCAAATTTCAAGTC 60.353 50.000 0.00 0.00 0.00 3.01
302 303 1.620323 GGCCTGCTCCAAATTTCAAGT 59.380 47.619 0.00 0.00 0.00 3.16
303 304 1.897802 AGGCCTGCTCCAAATTTCAAG 59.102 47.619 3.11 0.00 0.00 3.02
304 305 1.895131 GAGGCCTGCTCCAAATTTCAA 59.105 47.619 12.00 0.00 0.00 2.69
305 306 1.203038 TGAGGCCTGCTCCAAATTTCA 60.203 47.619 12.00 0.00 0.00 2.69
306 307 1.203287 GTGAGGCCTGCTCCAAATTTC 59.797 52.381 12.00 0.00 0.00 2.17
307 308 1.260544 GTGAGGCCTGCTCCAAATTT 58.739 50.000 12.00 0.00 0.00 1.82
308 309 0.962356 CGTGAGGCCTGCTCCAAATT 60.962 55.000 12.00 0.00 0.00 1.82
309 310 1.377725 CGTGAGGCCTGCTCCAAAT 60.378 57.895 12.00 0.00 0.00 2.32
310 311 2.032528 CGTGAGGCCTGCTCCAAA 59.967 61.111 12.00 0.00 0.00 3.28
311 312 4.704833 GCGTGAGGCCTGCTCCAA 62.705 66.667 12.00 0.00 34.80 3.53
313 314 4.479993 ATGCGTGAGGCCTGCTCC 62.480 66.667 12.00 0.00 42.61 4.70
314 315 2.894387 GATGCGTGAGGCCTGCTC 60.894 66.667 12.00 3.62 42.61 4.26
315 316 2.753009 TTTGATGCGTGAGGCCTGCT 62.753 55.000 12.00 0.00 42.61 4.24
316 317 1.660560 ATTTGATGCGTGAGGCCTGC 61.661 55.000 12.00 8.68 42.61 4.85
317 318 0.813184 AATTTGATGCGTGAGGCCTG 59.187 50.000 12.00 0.00 42.61 4.85
318 319 0.813184 CAATTTGATGCGTGAGGCCT 59.187 50.000 3.86 3.86 42.61 5.19
319 320 0.527565 ACAATTTGATGCGTGAGGCC 59.472 50.000 2.79 0.00 42.61 5.19
320 321 1.470098 AGACAATTTGATGCGTGAGGC 59.530 47.619 2.79 0.00 43.96 4.70
321 322 3.063997 GGTAGACAATTTGATGCGTGAGG 59.936 47.826 2.79 0.00 0.00 3.86
322 323 3.935203 AGGTAGACAATTTGATGCGTGAG 59.065 43.478 2.79 0.00 0.00 3.51
323 324 3.932710 GAGGTAGACAATTTGATGCGTGA 59.067 43.478 2.79 0.00 0.00 4.35
324 325 3.684305 TGAGGTAGACAATTTGATGCGTG 59.316 43.478 2.79 0.00 0.00 5.34
325 326 3.937814 TGAGGTAGACAATTTGATGCGT 58.062 40.909 2.79 0.00 0.00 5.24
326 327 4.944962 TTGAGGTAGACAATTTGATGCG 57.055 40.909 2.79 0.00 0.00 4.73
327 328 8.538409 AATTTTTGAGGTAGACAATTTGATGC 57.462 30.769 2.79 0.00 0.00 3.91
330 331 9.883142 ACAAAATTTTTGAGGTAGACAATTTGA 57.117 25.926 24.73 0.00 32.62 2.69
335 336 8.940952 CCAAAACAAAATTTTTGAGGTAGACAA 58.059 29.630 24.73 0.00 45.54 3.18
336 337 8.097662 ACCAAAACAAAATTTTTGAGGTAGACA 58.902 29.630 24.73 0.00 45.54 3.41
337 338 8.487313 ACCAAAACAAAATTTTTGAGGTAGAC 57.513 30.769 24.73 0.00 45.54 2.59
338 339 9.508642 AAACCAAAACAAAATTTTTGAGGTAGA 57.491 25.926 24.73 0.00 45.54 2.59
383 384 9.458374 CCTGTTAGAAAACAATTCGTAACAAAT 57.542 29.630 11.03 0.00 44.79 2.32
384 385 7.916450 CCCTGTTAGAAAACAATTCGTAACAAA 59.084 33.333 11.03 0.00 44.79 2.83
385 386 7.067251 ACCCTGTTAGAAAACAATTCGTAACAA 59.933 33.333 11.03 0.00 44.79 2.83
386 387 6.543100 ACCCTGTTAGAAAACAATTCGTAACA 59.457 34.615 0.00 0.00 44.79 2.41
387 388 6.854381 CACCCTGTTAGAAAACAATTCGTAAC 59.146 38.462 0.00 0.00 44.79 2.50
388 389 6.513720 GCACCCTGTTAGAAAACAATTCGTAA 60.514 38.462 0.00 0.00 44.79 3.18
389 390 5.049267 GCACCCTGTTAGAAAACAATTCGTA 60.049 40.000 0.00 0.00 44.79 3.43
390 391 4.261447 GCACCCTGTTAGAAAACAATTCGT 60.261 41.667 0.00 0.00 44.79 3.85
391 392 4.226761 GCACCCTGTTAGAAAACAATTCG 58.773 43.478 0.00 0.00 44.79 3.34
392 393 5.009610 TCTGCACCCTGTTAGAAAACAATTC 59.990 40.000 0.00 0.00 44.79 2.17
393 394 4.892934 TCTGCACCCTGTTAGAAAACAATT 59.107 37.500 0.00 0.00 44.79 2.32
394 395 4.469657 TCTGCACCCTGTTAGAAAACAAT 58.530 39.130 0.00 0.00 44.79 2.71
395 396 3.892284 TCTGCACCCTGTTAGAAAACAA 58.108 40.909 0.00 0.00 44.79 2.83
396 397 3.569194 TCTGCACCCTGTTAGAAAACA 57.431 42.857 0.00 0.00 43.32 2.83
397 398 4.072131 TCATCTGCACCCTGTTAGAAAAC 58.928 43.478 0.00 0.00 36.07 2.43
398 399 4.326826 CTCATCTGCACCCTGTTAGAAAA 58.673 43.478 0.00 0.00 0.00 2.29
399 400 3.869912 GCTCATCTGCACCCTGTTAGAAA 60.870 47.826 0.00 0.00 0.00 2.52
400 401 2.355108 GCTCATCTGCACCCTGTTAGAA 60.355 50.000 0.00 0.00 0.00 2.10
401 402 1.208052 GCTCATCTGCACCCTGTTAGA 59.792 52.381 0.00 0.00 0.00 2.10
402 403 1.661341 GCTCATCTGCACCCTGTTAG 58.339 55.000 0.00 0.00 0.00 2.34
403 404 0.253044 GGCTCATCTGCACCCTGTTA 59.747 55.000 0.00 0.00 34.04 2.41
404 405 1.001641 GGCTCATCTGCACCCTGTT 60.002 57.895 0.00 0.00 34.04 3.16
405 406 1.922369 AGGCTCATCTGCACCCTGT 60.922 57.895 0.00 0.00 34.04 4.00
406 407 1.451567 CAGGCTCATCTGCACCCTG 60.452 63.158 0.00 0.00 37.35 4.45
407 408 2.677289 CCAGGCTCATCTGCACCCT 61.677 63.158 0.00 0.00 33.64 4.34
408 409 2.124403 CCAGGCTCATCTGCACCC 60.124 66.667 0.00 0.00 33.64 4.61
409 410 2.124403 CCCAGGCTCATCTGCACC 60.124 66.667 0.00 0.00 33.64 5.01
410 411 2.827642 GCCCAGGCTCATCTGCAC 60.828 66.667 0.08 0.00 38.26 4.57
411 412 3.332385 TGCCCAGGCTCATCTGCA 61.332 61.111 10.58 0.00 42.51 4.41
412 413 2.827642 GTGCCCAGGCTCATCTGC 60.828 66.667 10.58 0.00 42.51 4.26
413 414 2.124403 GGTGCCCAGGCTCATCTG 60.124 66.667 10.58 0.00 42.51 2.90
414 415 1.792757 TTTGGTGCCCAGGCTCATCT 61.793 55.000 10.58 0.00 42.51 2.90
415 416 0.899717 TTTTGGTGCCCAGGCTCATC 60.900 55.000 10.58 0.00 42.51 2.92
416 417 1.155859 TTTTGGTGCCCAGGCTCAT 59.844 52.632 10.58 0.00 42.51 2.90
417 418 1.832167 GTTTTGGTGCCCAGGCTCA 60.832 57.895 10.58 5.75 42.51 4.26
418 419 2.919494 CGTTTTGGTGCCCAGGCTC 61.919 63.158 10.58 6.18 42.51 4.70
419 420 2.912025 CGTTTTGGTGCCCAGGCT 60.912 61.111 10.58 0.00 42.51 4.58
420 421 3.207547 GACGTTTTGGTGCCCAGGC 62.208 63.158 0.38 0.38 42.35 4.85
421 422 2.561037 GGACGTTTTGGTGCCCAGG 61.561 63.158 0.00 0.00 33.81 4.45
422 423 0.250553 TAGGACGTTTTGGTGCCCAG 60.251 55.000 0.00 0.00 33.81 4.45
423 424 0.535553 GTAGGACGTTTTGGTGCCCA 60.536 55.000 0.00 0.00 0.00 5.36
424 425 0.250597 AGTAGGACGTTTTGGTGCCC 60.251 55.000 0.00 0.00 0.00 5.36
425 426 1.154197 GAGTAGGACGTTTTGGTGCC 58.846 55.000 0.00 0.00 0.00 5.01
426 427 0.788391 CGAGTAGGACGTTTTGGTGC 59.212 55.000 0.00 0.00 0.00 5.01
427 428 1.425412 CCGAGTAGGACGTTTTGGTG 58.575 55.000 0.00 0.00 45.00 4.17
428 429 0.319405 CCCGAGTAGGACGTTTTGGT 59.681 55.000 0.00 0.00 45.00 3.67
429 430 0.604578 TCCCGAGTAGGACGTTTTGG 59.395 55.000 0.00 0.00 45.00 3.28
430 431 1.271656 ACTCCCGAGTAGGACGTTTTG 59.728 52.381 0.00 0.00 45.00 2.44
431 432 1.625511 ACTCCCGAGTAGGACGTTTT 58.374 50.000 0.00 0.00 45.00 2.43
432 433 2.496899 TACTCCCGAGTAGGACGTTT 57.503 50.000 0.31 0.00 45.00 3.60
433 434 2.295885 CATACTCCCGAGTAGGACGTT 58.704 52.381 10.29 0.00 45.52 3.99
434 435 1.211457 ACATACTCCCGAGTAGGACGT 59.789 52.381 20.11 7.93 45.52 4.34
435 436 1.964552 ACATACTCCCGAGTAGGACG 58.035 55.000 20.11 7.42 45.52 4.79
436 437 4.202441 TGTAACATACTCCCGAGTAGGAC 58.798 47.826 20.11 11.01 45.52 3.85
437 438 4.508551 TGTAACATACTCCCGAGTAGGA 57.491 45.455 20.11 0.00 45.52 2.94
438 439 5.786264 ATTGTAACATACTCCCGAGTAGG 57.214 43.478 13.47 13.47 45.94 3.18
439 440 8.573885 TCATAATTGTAACATACTCCCGAGTAG 58.426 37.037 10.19 5.57 45.94 2.57
440 441 8.467963 TCATAATTGTAACATACTCCCGAGTA 57.532 34.615 7.02 7.02 46.68 2.59
441 442 7.356089 TCATAATTGTAACATACTCCCGAGT 57.644 36.000 2.41 2.41 45.02 4.18
442 443 8.657074 TTTCATAATTGTAACATACTCCCGAG 57.343 34.615 0.00 0.00 0.00 4.63
496 497 9.498176 CCAACTCATAAGATTCATATGATGTCA 57.502 33.333 6.17 0.00 38.66 3.58
497 498 9.499479 ACCAACTCATAAGATTCATATGATGTC 57.501 33.333 6.17 8.22 38.66 3.06
498 499 9.857656 AACCAACTCATAAGATTCATATGATGT 57.142 29.630 6.17 9.01 38.66 3.06
514 515 9.911788 AACTCATAAGATTCATAACCAACTCAT 57.088 29.630 0.00 0.00 0.00 2.90
515 516 9.166173 CAACTCATAAGATTCATAACCAACTCA 57.834 33.333 0.00 0.00 0.00 3.41
516 517 8.616076 CCAACTCATAAGATTCATAACCAACTC 58.384 37.037 0.00 0.00 0.00 3.01
517 518 8.109634 ACCAACTCATAAGATTCATAACCAACT 58.890 33.333 0.00 0.00 0.00 3.16
518 519 8.281212 ACCAACTCATAAGATTCATAACCAAC 57.719 34.615 0.00 0.00 0.00 3.77
519 520 8.877864 AACCAACTCATAAGATTCATAACCAA 57.122 30.769 0.00 0.00 0.00 3.67
525 526 9.857656 ATGTCATAACCAACTCATAAGATTCAT 57.142 29.630 0.00 0.00 0.00 2.57
530 531 9.546428 CACATATGTCATAACCAACTCATAAGA 57.454 33.333 5.07 0.00 0.00 2.10
531 532 8.285394 GCACATATGTCATAACCAACTCATAAG 58.715 37.037 5.07 0.00 0.00 1.73
532 533 7.228507 GGCACATATGTCATAACCAACTCATAA 59.771 37.037 5.07 0.00 0.00 1.90
533 534 6.710295 GGCACATATGTCATAACCAACTCATA 59.290 38.462 5.07 0.00 0.00 2.15
534 535 5.532406 GGCACATATGTCATAACCAACTCAT 59.468 40.000 5.07 0.00 0.00 2.90
535 536 4.881273 GGCACATATGTCATAACCAACTCA 59.119 41.667 5.07 0.00 0.00 3.41
536 537 4.881273 TGGCACATATGTCATAACCAACTC 59.119 41.667 5.07 0.00 34.80 3.01
537 538 4.854173 TGGCACATATGTCATAACCAACT 58.146 39.130 5.07 0.00 34.80 3.16
553 554 5.629600 TCATGTCATAAGATCACATGGCACA 60.630 40.000 18.06 11.20 45.05 4.57
554 555 4.818005 TCATGTCATAAGATCACATGGCAC 59.182 41.667 18.06 7.13 45.05 5.01
555 556 5.038651 TCATGTCATAAGATCACATGGCA 57.961 39.130 18.06 16.15 45.05 4.92
556 557 6.570672 AATCATGTCATAAGATCACATGGC 57.429 37.500 18.06 11.94 45.05 4.40
557 558 9.059260 TGTTAATCATGTCATAAGATCACATGG 57.941 33.333 18.06 5.33 45.05 3.66
560 561 9.447157 TGTTGTTAATCATGTCATAAGATCACA 57.553 29.630 0.00 0.00 0.00 3.58
591 592 9.918630 CCTGAAAACTCATACATGATTCTTTTT 57.081 29.630 0.00 0.00 36.02 1.94
592 593 9.300681 TCCTGAAAACTCATACATGATTCTTTT 57.699 29.630 0.00 0.00 36.02 2.27
593 594 8.734386 GTCCTGAAAACTCATACATGATTCTTT 58.266 33.333 0.00 0.00 36.02 2.52
594 595 7.065085 CGTCCTGAAAACTCATACATGATTCTT 59.935 37.037 0.00 0.00 36.02 2.52
595 596 6.536582 CGTCCTGAAAACTCATACATGATTCT 59.463 38.462 0.00 0.00 36.02 2.40
596 597 6.238211 CCGTCCTGAAAACTCATACATGATTC 60.238 42.308 0.00 0.00 36.02 2.52
597 598 5.586243 CCGTCCTGAAAACTCATACATGATT 59.414 40.000 0.00 0.00 36.02 2.57
598 599 5.104941 TCCGTCCTGAAAACTCATACATGAT 60.105 40.000 0.00 0.00 36.02 2.45
599 600 4.221924 TCCGTCCTGAAAACTCATACATGA 59.778 41.667 0.00 0.00 35.16 3.07
600 601 4.503910 TCCGTCCTGAAAACTCATACATG 58.496 43.478 0.00 0.00 0.00 3.21
601 602 4.819105 TCCGTCCTGAAAACTCATACAT 57.181 40.909 0.00 0.00 0.00 2.29
602 603 4.819105 ATCCGTCCTGAAAACTCATACA 57.181 40.909 0.00 0.00 0.00 2.29
603 604 5.048507 GGTATCCGTCCTGAAAACTCATAC 58.951 45.833 0.00 0.00 0.00 2.39
604 605 4.100498 GGGTATCCGTCCTGAAAACTCATA 59.900 45.833 0.00 0.00 0.00 2.15
605 606 3.118371 GGGTATCCGTCCTGAAAACTCAT 60.118 47.826 0.00 0.00 0.00 2.90
606 607 2.235402 GGGTATCCGTCCTGAAAACTCA 59.765 50.000 0.00 0.00 0.00 3.41
607 608 2.500504 AGGGTATCCGTCCTGAAAACTC 59.499 50.000 0.00 0.00 38.33 3.01
608 609 2.547990 AGGGTATCCGTCCTGAAAACT 58.452 47.619 0.00 0.00 38.33 2.66
615 616 0.032017 AAGAGCAGGGTATCCGTCCT 60.032 55.000 0.00 0.00 38.33 3.85
616 617 0.831307 AAAGAGCAGGGTATCCGTCC 59.169 55.000 0.00 0.00 38.33 4.79
617 618 1.941325 CAAAGAGCAGGGTATCCGTC 58.059 55.000 0.00 0.00 38.33 4.79
618 619 0.107654 GCAAAGAGCAGGGTATCCGT 60.108 55.000 0.00 0.00 44.79 4.69
619 620 2.695314 GCAAAGAGCAGGGTATCCG 58.305 57.895 0.00 0.00 44.79 4.18
666 667 2.931325 GACGGATGGCGTTGTTGTAATA 59.069 45.455 0.00 0.00 0.00 0.98
670 671 2.314647 CGACGGATGGCGTTGTTGT 61.315 57.895 0.00 0.00 0.00 3.32
777 788 3.214123 CTATGGGCGACGGACGGA 61.214 66.667 1.66 0.00 42.83 4.69
811 828 1.864711 CCTGTCAAACGACGTGTGATT 59.135 47.619 22.99 0.08 32.03 2.57
823 840 1.234821 GTGCGATGTTCCCTGTCAAA 58.765 50.000 0.00 0.00 0.00 2.69
824 841 0.107643 TGTGCGATGTTCCCTGTCAA 59.892 50.000 0.00 0.00 0.00 3.18
825 842 0.107643 TTGTGCGATGTTCCCTGTCA 59.892 50.000 0.00 0.00 0.00 3.58
826 843 1.234821 TTTGTGCGATGTTCCCTGTC 58.765 50.000 0.00 0.00 0.00 3.51
827 844 1.686355 TTTTGTGCGATGTTCCCTGT 58.314 45.000 0.00 0.00 0.00 4.00
828 845 2.393764 GTTTTTGTGCGATGTTCCCTG 58.606 47.619 0.00 0.00 0.00 4.45
829 846 1.001815 CGTTTTTGTGCGATGTTCCCT 60.002 47.619 0.00 0.00 0.00 4.20
830 847 1.404477 CGTTTTTGTGCGATGTTCCC 58.596 50.000 0.00 0.00 0.00 3.97
831 848 1.002251 TCCGTTTTTGTGCGATGTTCC 60.002 47.619 0.00 0.00 0.00 3.62
832 849 2.392933 TCCGTTTTTGTGCGATGTTC 57.607 45.000 0.00 0.00 0.00 3.18
833 850 2.853731 TTCCGTTTTTGTGCGATGTT 57.146 40.000 0.00 0.00 0.00 2.71
834 851 2.351350 GGATTCCGTTTTTGTGCGATGT 60.351 45.455 0.00 0.00 0.00 3.06
835 852 2.250188 GGATTCCGTTTTTGTGCGATG 58.750 47.619 0.00 0.00 0.00 3.84
836 853 1.201414 GGGATTCCGTTTTTGTGCGAT 59.799 47.619 0.00 0.00 0.00 4.58
837 854 0.594110 GGGATTCCGTTTTTGTGCGA 59.406 50.000 0.00 0.00 0.00 5.10
866 883 3.548415 GGACGAGACTTTATAGCGAGGTG 60.548 52.174 0.00 0.00 0.00 4.00
869 886 2.030981 GGGGACGAGACTTTATAGCGAG 60.031 54.545 0.00 0.00 0.00 5.03
883 900 2.284405 GAGGGAAGTGGGGGACGA 60.284 66.667 0.00 0.00 0.00 4.20
915 932 1.546476 ACAGATCTGTTCCGTGAGTCC 59.454 52.381 22.89 0.00 41.83 3.85
1158 1194 0.533755 CAGATGACTTGGGATCGGGC 60.534 60.000 0.00 0.00 0.00 6.13
1184 1225 8.858003 ATCAGTCAGTTACAGTTAATCGTATG 57.142 34.615 0.00 0.00 0.00 2.39
1237 1278 2.009774 CCGTCAGGCAGGTTAATCAAG 58.990 52.381 0.00 0.00 0.00 3.02
1238 1279 1.626321 TCCGTCAGGCAGGTTAATCAA 59.374 47.619 0.00 0.00 37.47 2.57
1239 1280 1.271856 TCCGTCAGGCAGGTTAATCA 58.728 50.000 0.00 0.00 37.47 2.57
1240 1281 2.484889 GATCCGTCAGGCAGGTTAATC 58.515 52.381 0.00 0.00 37.47 1.75
1241 1282 1.202533 CGATCCGTCAGGCAGGTTAAT 60.203 52.381 0.00 0.00 37.47 1.40
1242 1283 0.174845 CGATCCGTCAGGCAGGTTAA 59.825 55.000 0.00 0.00 37.47 2.01
1243 1284 1.672854 CCGATCCGTCAGGCAGGTTA 61.673 60.000 0.00 0.00 37.47 2.85
1244 1285 2.579201 CGATCCGTCAGGCAGGTT 59.421 61.111 0.00 0.00 37.47 3.50
1245 1286 3.461773 CCGATCCGTCAGGCAGGT 61.462 66.667 0.00 0.00 37.47 4.00
1246 1287 3.461773 ACCGATCCGTCAGGCAGG 61.462 66.667 0.00 0.00 37.47 4.85
1247 1288 2.202797 CACCGATCCGTCAGGCAG 60.203 66.667 0.00 0.00 37.47 4.85
1248 1289 3.770040 CCACCGATCCGTCAGGCA 61.770 66.667 0.00 0.00 37.47 4.75
1249 1290 3.771160 ACCACCGATCCGTCAGGC 61.771 66.667 0.00 0.00 37.47 4.85
1250 1291 1.884075 TTCACCACCGATCCGTCAGG 61.884 60.000 0.00 0.00 39.46 3.86
1251 1292 0.175760 ATTCACCACCGATCCGTCAG 59.824 55.000 0.00 0.00 0.00 3.51
1252 1293 0.611200 AATTCACCACCGATCCGTCA 59.389 50.000 0.00 0.00 0.00 4.35
1253 1294 1.734163 AAATTCACCACCGATCCGTC 58.266 50.000 0.00 0.00 0.00 4.79
1254 1295 2.081462 GAAAATTCACCACCGATCCGT 58.919 47.619 0.00 0.00 0.00 4.69
1255 1296 2.356135 AGAAAATTCACCACCGATCCG 58.644 47.619 0.00 0.00 0.00 4.18
1256 1297 3.756434 TCAAGAAAATTCACCACCGATCC 59.244 43.478 0.00 0.00 0.00 3.36
1257 1298 5.567138 ATCAAGAAAATTCACCACCGATC 57.433 39.130 0.00 0.00 0.00 3.69
1258 1299 5.982890 AATCAAGAAAATTCACCACCGAT 57.017 34.783 0.00 0.00 0.00 4.18
1259 1300 6.294286 GGTTAATCAAGAAAATTCACCACCGA 60.294 38.462 0.00 0.00 32.82 4.69
1260 1301 5.861787 GGTTAATCAAGAAAATTCACCACCG 59.138 40.000 0.00 0.00 32.82 4.94
1261 1302 6.868339 CAGGTTAATCAAGAAAATTCACCACC 59.132 38.462 0.00 0.00 34.30 4.61
1262 1303 6.366061 GCAGGTTAATCAAGAAAATTCACCAC 59.634 38.462 0.00 0.00 34.30 4.16
1263 1304 6.454795 GCAGGTTAATCAAGAAAATTCACCA 58.545 36.000 0.00 0.00 34.30 4.17
1264 1305 5.869344 GGCAGGTTAATCAAGAAAATTCACC 59.131 40.000 0.00 0.00 32.76 4.02
1265 1306 6.587608 CAGGCAGGTTAATCAAGAAAATTCAC 59.412 38.462 0.00 0.00 0.00 3.18
1266 1307 6.493115 TCAGGCAGGTTAATCAAGAAAATTCA 59.507 34.615 0.00 0.00 0.00 2.57
1267 1308 6.808704 GTCAGGCAGGTTAATCAAGAAAATTC 59.191 38.462 0.00 0.00 0.00 2.17
1268 1309 6.570378 CGTCAGGCAGGTTAATCAAGAAAATT 60.570 38.462 0.00 0.00 0.00 1.82
1269 1310 5.106157 CGTCAGGCAGGTTAATCAAGAAAAT 60.106 40.000 0.00 0.00 0.00 1.82
1270 1311 4.215399 CGTCAGGCAGGTTAATCAAGAAAA 59.785 41.667 0.00 0.00 0.00 2.29
1271 1312 3.751175 CGTCAGGCAGGTTAATCAAGAAA 59.249 43.478 0.00 0.00 0.00 2.52
1272 1313 3.334691 CGTCAGGCAGGTTAATCAAGAA 58.665 45.455 0.00 0.00 0.00 2.52
1273 1314 2.354704 CCGTCAGGCAGGTTAATCAAGA 60.355 50.000 0.00 0.00 0.00 3.02
1274 1315 2.009774 CCGTCAGGCAGGTTAATCAAG 58.990 52.381 0.00 0.00 0.00 3.02
1275 1316 1.626321 TCCGTCAGGCAGGTTAATCAA 59.374 47.619 0.00 0.00 37.47 2.57
1276 1317 1.271856 TCCGTCAGGCAGGTTAATCA 58.728 50.000 0.00 0.00 37.47 2.57
1277 1318 2.484889 GATCCGTCAGGCAGGTTAATC 58.515 52.381 0.00 0.00 37.47 1.75
1278 1319 1.202533 CGATCCGTCAGGCAGGTTAAT 60.203 52.381 0.00 0.00 37.47 1.40
1279 1320 0.174845 CGATCCGTCAGGCAGGTTAA 59.825 55.000 0.00 0.00 37.47 2.01
1280 1321 1.672854 CCGATCCGTCAGGCAGGTTA 61.673 60.000 0.00 0.00 37.47 2.85
1281 1322 2.579201 CGATCCGTCAGGCAGGTT 59.421 61.111 0.00 0.00 37.47 3.50
1282 1323 3.461773 CCGATCCGTCAGGCAGGT 61.462 66.667 0.00 0.00 37.47 4.00
1283 1324 3.461773 ACCGATCCGTCAGGCAGG 61.462 66.667 0.00 0.00 37.47 4.85
1284 1325 2.202797 CACCGATCCGTCAGGCAG 60.203 66.667 0.00 0.00 37.47 4.85
1285 1326 3.770040 CCACCGATCCGTCAGGCA 61.770 66.667 0.00 0.00 37.47 4.75
1286 1327 3.771160 ACCACCGATCCGTCAGGC 61.771 66.667 0.00 0.00 37.47 4.85
1287 1328 1.884075 TTCACCACCGATCCGTCAGG 61.884 60.000 0.00 0.00 39.46 3.86
1288 1329 0.175760 ATTCACCACCGATCCGTCAG 59.824 55.000 0.00 0.00 0.00 3.51
1289 1330 0.611200 AATTCACCACCGATCCGTCA 59.389 50.000 0.00 0.00 0.00 4.35
1290 1331 1.734163 AAATTCACCACCGATCCGTC 58.266 50.000 0.00 0.00 0.00 4.79
1291 1332 1.810151 CAAAATTCACCACCGATCCGT 59.190 47.619 0.00 0.00 0.00 4.69
1292 1333 1.810151 ACAAAATTCACCACCGATCCG 59.190 47.619 0.00 0.00 0.00 4.18
1293 1334 3.574614 CAACAAAATTCACCACCGATCC 58.425 45.455 0.00 0.00 0.00 3.36
1294 1335 3.574614 CCAACAAAATTCACCACCGATC 58.425 45.455 0.00 0.00 0.00 3.69
1295 1336 2.298729 CCCAACAAAATTCACCACCGAT 59.701 45.455 0.00 0.00 0.00 4.18
1296 1337 1.683917 CCCAACAAAATTCACCACCGA 59.316 47.619 0.00 0.00 0.00 4.69
1297 1338 1.871822 GCCCAACAAAATTCACCACCG 60.872 52.381 0.00 0.00 0.00 4.94
1298 1339 1.871822 CGCCCAACAAAATTCACCACC 60.872 52.381 0.00 0.00 0.00 4.61
1299 1340 1.496934 CGCCCAACAAAATTCACCAC 58.503 50.000 0.00 0.00 0.00 4.16
1300 1341 0.249657 GCGCCCAACAAAATTCACCA 60.250 50.000 0.00 0.00 0.00 4.17
1301 1342 0.249657 TGCGCCCAACAAAATTCACC 60.250 50.000 4.18 0.00 0.00 4.02
1302 1343 1.139163 CTGCGCCCAACAAAATTCAC 58.861 50.000 4.18 0.00 0.00 3.18
1540 1581 2.353610 GGCCCCATCCACAAGCTTG 61.354 63.158 24.84 24.84 0.00 4.01
1551 1592 1.531748 CGTGTTGGATAGGCCCCAT 59.468 57.895 0.00 0.00 34.97 4.00
1626 1672 7.338800 AGCAAAATACTTGTGGGAATCATAG 57.661 36.000 0.00 0.00 0.00 2.23
1661 1711 4.860022 CTTTGGAGATATGTGGGAGGTTT 58.140 43.478 0.00 0.00 0.00 3.27
1662 1712 3.372025 GCTTTGGAGATATGTGGGAGGTT 60.372 47.826 0.00 0.00 0.00 3.50
1789 1872 7.885399 ACAGGTGATATTTTTCTCTTGCTAAGT 59.115 33.333 0.00 0.00 0.00 2.24
1790 1873 8.273780 ACAGGTGATATTTTTCTCTTGCTAAG 57.726 34.615 0.00 0.00 0.00 2.18
1791 1874 9.733556 TTACAGGTGATATTTTTCTCTTGCTAA 57.266 29.630 0.00 0.00 0.00 3.09
1792 1875 9.383519 CTTACAGGTGATATTTTTCTCTTGCTA 57.616 33.333 0.00 0.00 0.00 3.49
1793 1876 8.103305 TCTTACAGGTGATATTTTTCTCTTGCT 58.897 33.333 0.00 0.00 0.00 3.91
1794 1877 8.268850 TCTTACAGGTGATATTTTTCTCTTGC 57.731 34.615 0.00 0.00 0.00 4.01
1795 1878 9.658799 TCTCTTACAGGTGATATTTTTCTCTTG 57.341 33.333 0.00 0.00 0.00 3.02
1807 1890 9.739276 TTTGTGAATATTTCTCTTACAGGTGAT 57.261 29.630 0.00 0.00 0.00 3.06
1808 1891 9.739276 ATTTGTGAATATTTCTCTTACAGGTGA 57.261 29.630 0.00 0.00 0.00 4.02
1825 1908 9.985730 ATCAACAATCTTGTGTTATTTGTGAAT 57.014 25.926 0.00 0.00 41.31 2.57
1826 1909 9.462174 GATCAACAATCTTGTGTTATTTGTGAA 57.538 29.630 0.00 0.00 41.31 3.18
1827 1910 8.628280 TGATCAACAATCTTGTGTTATTTGTGA 58.372 29.630 0.00 0.00 41.31 3.58
1828 1911 8.693504 GTGATCAACAATCTTGTGTTATTTGTG 58.306 33.333 0.00 0.00 41.31 3.33
1829 1912 8.632679 AGTGATCAACAATCTTGTGTTATTTGT 58.367 29.630 0.00 0.00 41.31 2.83
1834 1917 8.289618 GCTTTAGTGATCAACAATCTTGTGTTA 58.710 33.333 0.00 0.00 41.31 2.41
1835 1918 7.141363 GCTTTAGTGATCAACAATCTTGTGTT 58.859 34.615 0.00 0.00 41.31 3.32
1836 1919 6.262944 TGCTTTAGTGATCAACAATCTTGTGT 59.737 34.615 0.00 0.00 41.31 3.72
1837 1920 6.671190 TGCTTTAGTGATCAACAATCTTGTG 58.329 36.000 0.00 0.00 41.31 3.33
1838 1921 6.882610 TGCTTTAGTGATCAACAATCTTGT 57.117 33.333 0.00 0.00 44.72 3.16
1839 1922 7.325338 CACTTGCTTTAGTGATCAACAATCTTG 59.675 37.037 0.00 0.00 46.72 3.02
1840 1923 7.365741 CACTTGCTTTAGTGATCAACAATCTT 58.634 34.615 0.00 0.00 46.72 2.40
1841 1924 6.906659 CACTTGCTTTAGTGATCAACAATCT 58.093 36.000 0.00 0.00 46.72 2.40
1852 1935 5.691754 GTGGGATTTTTCACTTGCTTTAGTG 59.308 40.000 7.58 7.58 45.46 2.74
1865 1948 4.034285 TCTCTTCCTGGTGGGATTTTTC 57.966 45.455 0.00 0.00 44.66 2.29
1912 1995 3.988379 TCACTTGCTTTGGTGATCAAC 57.012 42.857 2.98 2.98 37.52 3.18
1913 1996 4.998671 TTTCACTTGCTTTGGTGATCAA 57.001 36.364 0.00 0.00 41.27 2.57
1914 1997 4.998671 TTTTCACTTGCTTTGGTGATCA 57.001 36.364 0.00 0.00 41.27 2.92
1915 1998 6.073602 GGAATTTTTCACTTGCTTTGGTGATC 60.074 38.462 0.00 0.00 41.27 2.92
1916 1999 5.759763 GGAATTTTTCACTTGCTTTGGTGAT 59.240 36.000 0.00 0.00 41.27 3.06
1917 2000 5.115480 GGAATTTTTCACTTGCTTTGGTGA 58.885 37.500 0.00 0.00 40.17 4.02
1918 2001 4.874966 TGGAATTTTTCACTTGCTTTGGTG 59.125 37.500 0.00 0.00 35.06 4.17
1919 2002 4.875536 GTGGAATTTTTCACTTGCTTTGGT 59.124 37.500 0.00 0.00 0.00 3.67
1920 2003 4.273235 GGTGGAATTTTTCACTTGCTTTGG 59.727 41.667 1.93 0.00 34.57 3.28
1921 2004 5.006941 CAGGTGGAATTTTTCACTTGCTTTG 59.993 40.000 1.42 0.00 34.98 2.77
1922 2005 5.118286 CAGGTGGAATTTTTCACTTGCTTT 58.882 37.500 1.42 0.00 34.98 3.51
1923 2006 4.443315 CCAGGTGGAATTTTTCACTTGCTT 60.443 41.667 8.03 0.00 38.92 3.91
1924 2007 3.070015 CCAGGTGGAATTTTTCACTTGCT 59.930 43.478 8.03 0.00 38.92 3.91
1925 2008 3.069443 TCCAGGTGGAATTTTTCACTTGC 59.931 43.478 8.03 0.00 42.18 4.01
1926 2009 4.935352 TCCAGGTGGAATTTTTCACTTG 57.065 40.909 6.82 6.82 42.18 3.16
1938 2021 4.141274 TGTGATTTTTCTCTTCCAGGTGGA 60.141 41.667 0.00 0.00 43.73 4.02
1943 2026 9.185192 GTGTTATTTGTGATTTTTCTCTTCCAG 57.815 33.333 0.00 0.00 0.00 3.86
1989 2072 2.751806 CCAGGTGGATTTTCTCTCTTGC 59.248 50.000 0.00 0.00 37.39 4.01
2325 2408 7.276658 ACGAAGACTATGACAATGAAGAATGAC 59.723 37.037 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.