Multiple sequence alignment - TraesCS1D01G310200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G310200 chr1D 100.000 3774 0 0 1 3774 406544964 406548737 0.000000e+00 6970.0
1 TraesCS1D01G310200 chr1D 100.000 3321 0 0 4172 7492 406549135 406552455 0.000000e+00 6133.0
2 TraesCS1D01G310200 chr1D 88.281 256 25 4 6867 7120 406551766 406552018 1.220000e-77 302.0
3 TraesCS1D01G310200 chr1D 88.281 256 25 4 6803 7055 406551830 406552083 1.220000e-77 302.0
4 TraesCS1D01G310200 chr1B 94.121 3521 141 33 293 3774 546528069 546531562 0.000000e+00 5295.0
5 TraesCS1D01G310200 chr1B 93.882 2321 69 22 4743 7044 546532205 546534471 0.000000e+00 3432.0
6 TraesCS1D01G310200 chr1B 96.828 536 15 2 4172 4706 546531677 546532211 0.000000e+00 894.0
7 TraesCS1D01G310200 chr1B 88.365 636 34 12 6867 7492 546534248 546534853 0.000000e+00 728.0
8 TraesCS1D01G310200 chr1B 92.143 140 7 3 6843 6980 546534334 546534471 2.130000e-45 195.0
9 TraesCS1D01G310200 chr1B 80.319 188 19 2 6933 7120 546534248 546534417 7.890000e-25 126.0
10 TraesCS1D01G310200 chr1A 94.223 2839 94 32 4172 6986 501705272 501708064 0.000000e+00 4270.0
11 TraesCS1D01G310200 chr1A 95.022 2531 91 19 349 2853 501701443 501703964 0.000000e+00 3943.0
12 TraesCS1D01G310200 chr1A 94.954 872 26 7 2915 3774 501703963 501704828 0.000000e+00 1351.0
13 TraesCS1D01G310200 chr1A 96.709 395 11 1 7100 7492 501708082 501708476 0.000000e+00 656.0
14 TraesCS1D01G310200 chr1A 89.398 349 32 4 1 346 501700799 501701145 1.150000e-117 435.0
15 TraesCS1D01G310200 chr1A 90.210 143 10 4 6975 7115 501707924 501708064 4.620000e-42 183.0
16 TraesCS1D01G310200 chr1A 91.566 83 4 3 7039 7120 501707924 501708004 2.210000e-20 111.0
17 TraesCS1D01G310200 chr5A 90.164 244 22 2 7 248 389761595 389761838 4.360000e-82 316.0
18 TraesCS1D01G310200 chr6B 88.492 252 25 4 1 248 219219096 219219347 1.220000e-77 302.0
19 TraesCS1D01G310200 chr5B 86.905 252 31 2 1 251 125262532 125262782 1.590000e-71 281.0
20 TraesCS1D01G310200 chr5D 86.853 251 31 2 1 250 447301305 447301554 5.720000e-71 279.0
21 TraesCS1D01G310200 chr5D 86.454 251 29 5 1 249 245715085 245715332 3.450000e-68 270.0
22 TraesCS1D01G310200 chr6D 85.878 262 33 4 1 261 142140052 142139794 7.400000e-70 276.0
23 TraesCS1D01G310200 chr7B 86.000 250 27 7 1 246 323757297 323757542 2.070000e-65 261.0
24 TraesCS1D01G310200 chr2D 86.235 247 27 6 1 246 519163832 519163592 2.070000e-65 261.0
25 TraesCS1D01G310200 chr7D 95.349 43 2 0 261 303 491163470 491163428 1.350000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G310200 chr1D 406544964 406552455 7491 False 3426.750000 6970 94.140500 1 7492 4 chr1D.!!$F1 7491
1 TraesCS1D01G310200 chr1B 546528069 546534853 6784 False 1778.333333 5295 90.943000 293 7492 6 chr1B.!!$F1 7199
2 TraesCS1D01G310200 chr1A 501700799 501708476 7677 False 1564.142857 4270 93.154571 1 7492 7 chr1A.!!$F1 7491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 194 0.870307 CCGCCTGACCGATCTAAACG 60.870 60.000 0.00 0.00 0.00 3.60 F
1153 1475 0.108207 TTTGTTTCCGGCGGTTAGGA 59.892 50.000 27.32 2.18 34.19 2.94 F
1251 1574 0.510790 CGTTTGGCGAATTTTTGGGC 59.489 50.000 0.00 0.00 44.77 5.36 F
1885 2210 0.846693 AACACCAAGTGCTCCTTCCT 59.153 50.000 0.00 0.00 36.98 3.36 F
2397 2730 1.118838 ATCTGCTAGGACCTGTGCTC 58.881 55.000 18.13 0.00 32.14 4.26 F
3670 4075 0.923358 TGTCCTGGTGGGTCAAACTT 59.077 50.000 0.00 0.00 36.25 2.66 F
4775 5235 0.463620 TGGCAAAACCTTGGAAGCAC 59.536 50.000 0.00 0.00 40.22 4.40 F
5227 5700 1.076727 GGGCCCTGGTGCTACTTTT 59.923 57.895 17.04 0.00 0.00 2.27 F
5249 5722 1.225855 CCAAAGTCAGCAGCGTGTTA 58.774 50.000 0.00 0.00 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2443 0.962356 CCTGTTGTGGGCCAGATGTC 60.962 60.000 6.4 0.0 0.00 3.06 R
2859 3192 2.535984 CGCAGCTTAGATAGACAAACGG 59.464 50.000 0.0 0.0 0.00 4.44 R
2860 3193 3.825498 CGCAGCTTAGATAGACAAACG 57.175 47.619 0.0 0.0 0.00 3.60 R
3349 3754 0.612174 AGCTCTGCTGACCTCGGTAA 60.612 55.000 0.0 0.0 37.57 2.85 R
4214 4673 1.522092 CGCCAGAGTGCCAATCCTA 59.478 57.895 0.0 0.0 0.00 2.94 R
5227 5700 1.823470 ACGCTGCTGACTTTGGCAA 60.823 52.632 0.0 0.0 38.02 4.52 R
6286 6772 0.036577 CACCACAGGAGCTGAAGGAG 60.037 60.000 0.0 0.0 35.46 3.69 R
6288 6774 0.321122 GTCACCACAGGAGCTGAAGG 60.321 60.000 0.0 0.0 36.70 3.46 R
7191 7714 0.610232 AACCTGCTTCCTGCCATGTC 60.610 55.000 0.0 0.0 42.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 40 8.999905 TTAATTAGGTTTAAGTGGACTTTGGT 57.000 30.769 0.00 0.00 37.40 3.67
102 105 5.455392 TCTACGACCTGTTTTTCTTCTACG 58.545 41.667 0.00 0.00 0.00 3.51
106 109 2.224113 ACCTGTTTTTCTTCTACGCCGA 60.224 45.455 0.00 0.00 0.00 5.54
117 120 1.161843 CTACGCCGACAAATTTGGGT 58.838 50.000 21.74 11.32 0.00 4.51
127 130 2.292292 ACAAATTTGGGTCCGTCTTTCG 59.708 45.455 21.74 0.00 39.52 3.46
152 155 1.752198 GCACCTGCCGACCCATATA 59.248 57.895 0.00 0.00 34.31 0.86
160 163 2.292016 TGCCGACCCATATAAAAATGCG 59.708 45.455 0.00 0.00 0.00 4.73
164 167 3.363575 CGACCCATATAAAAATGCGGACG 60.364 47.826 0.00 0.00 33.32 4.79
165 168 3.547746 ACCCATATAAAAATGCGGACGT 58.452 40.909 0.00 0.00 0.00 4.34
186 189 3.518998 CGTCCGCCTGACCGATCT 61.519 66.667 0.00 0.00 41.18 2.75
191 194 0.870307 CCGCCTGACCGATCTAAACG 60.870 60.000 0.00 0.00 0.00 3.60
203 206 1.421382 TCTAAACGGACGAAAAGCGG 58.579 50.000 0.00 0.00 46.49 5.52
205 208 1.125566 CTAAACGGACGAAAAGCGGAC 59.874 52.381 0.00 0.00 46.49 4.79
220 223 3.992019 GACAAAACGCGCGTCCGT 61.992 61.111 37.77 30.58 44.41 4.69
273 277 5.016173 CCCTGAAACATGATTCCCTTTACA 58.984 41.667 12.62 0.00 0.00 2.41
290 294 6.652062 CCCTTTACATTTACGTTAACACTCCT 59.348 38.462 6.39 0.00 0.00 3.69
342 346 3.006430 TCACAAAGACAAGTCGGAGCATA 59.994 43.478 0.00 0.00 34.09 3.14
346 350 2.729194 AGACAAGTCGGAGCATACTCT 58.271 47.619 0.00 0.00 42.98 3.24
347 351 2.685897 AGACAAGTCGGAGCATACTCTC 59.314 50.000 0.00 0.00 42.98 3.20
362 660 5.011125 GCATACTCTCTACCCAGATAAAGCA 59.989 44.000 0.00 0.00 0.00 3.91
364 662 5.346181 ACTCTCTACCCAGATAAAGCAAC 57.654 43.478 0.00 0.00 0.00 4.17
773 1092 2.124901 CCGCGCTGTTTATGGGGA 60.125 61.111 5.56 0.00 37.89 4.81
1045 1364 2.504032 CCGCGGTATGACCCATGT 59.496 61.111 19.50 0.00 33.75 3.21
1053 1372 0.980754 TATGACCCATGTCCCTGCGT 60.981 55.000 0.00 0.00 41.01 5.24
1153 1475 0.108207 TTTGTTTCCGGCGGTTAGGA 59.892 50.000 27.32 2.18 34.19 2.94
1239 1561 2.792542 GCTTGATAGATGCACGTTTGGC 60.793 50.000 0.00 0.00 0.00 4.52
1251 1574 0.510790 CGTTTGGCGAATTTTTGGGC 59.489 50.000 0.00 0.00 44.77 5.36
1408 1731 4.442893 GCTGCGGTTATAGATGGGCATATA 60.443 45.833 0.00 0.00 0.00 0.86
1449 1772 5.036737 GCGTGAAAAATCCTGGATTATGTG 58.963 41.667 21.62 11.03 31.46 3.21
1486 1809 8.534496 ACCCTGTTAACGTTTCACTAGTATATT 58.466 33.333 5.91 0.00 0.00 1.28
1614 1938 1.176527 TGTGCTTCAATTGCTAGGCC 58.823 50.000 0.00 0.00 0.00 5.19
1778 2103 9.159364 CTTAATTGTCTCAAGAGATGATCAACA 57.841 33.333 0.00 0.00 39.97 3.33
1885 2210 0.846693 AACACCAAGTGCTCCTTCCT 59.153 50.000 0.00 0.00 36.98 3.36
2268 2601 6.615088 AGATGCAAGTGTTTTGATGACATAC 58.385 36.000 0.00 0.00 0.00 2.39
2361 2694 3.756117 CCTTTCTTTCACAAGGGCTAGT 58.244 45.455 0.00 0.00 36.62 2.57
2369 2702 6.895756 TCTTTCACAAGGGCTAGTAGAATCTA 59.104 38.462 0.00 0.00 0.00 1.98
2397 2730 1.118838 ATCTGCTAGGACCTGTGCTC 58.881 55.000 18.13 0.00 32.14 4.26
2454 2787 2.951457 TCCATCGAAGTTGCATCGTA 57.049 45.000 7.97 0.00 40.99 3.43
2592 2925 7.097192 TCATGGTACTCTTCTGTTAATGTGAC 58.903 38.462 0.00 0.00 0.00 3.67
2610 2943 4.223700 TGTGACATCAGCTTCCTCTTGTAT 59.776 41.667 0.00 0.00 0.00 2.29
2757 3090 1.405821 ACTCGCCTCTTATCAGTTCCG 59.594 52.381 0.00 0.00 0.00 4.30
2769 3102 7.792032 TCTTATCAGTTCCGGAGTTATTTCAT 58.208 34.615 3.34 0.00 0.00 2.57
2851 3184 3.906218 TCAAGAGGCCATAGACATATGCT 59.094 43.478 5.01 3.84 37.97 3.79
2852 3185 5.086621 TCAAGAGGCCATAGACATATGCTA 58.913 41.667 5.01 6.02 37.97 3.49
2853 3186 5.047021 TCAAGAGGCCATAGACATATGCTAC 60.047 44.000 5.01 0.00 37.97 3.58
2854 3187 4.420206 AGAGGCCATAGACATATGCTACA 58.580 43.478 5.01 0.00 37.97 2.74
2855 3188 5.028802 AGAGGCCATAGACATATGCTACAT 58.971 41.667 5.01 0.00 37.97 2.29
2856 3189 6.197903 AGAGGCCATAGACATATGCTACATA 58.802 40.000 5.01 0.00 37.97 2.29
2857 3190 6.097554 AGAGGCCATAGACATATGCTACATAC 59.902 42.308 5.01 0.00 37.97 2.39
2858 3191 5.721480 AGGCCATAGACATATGCTACATACA 59.279 40.000 5.01 0.00 37.97 2.29
2859 3192 5.812642 GGCCATAGACATATGCTACATACAC 59.187 44.000 1.58 0.00 37.97 2.90
2860 3193 5.812642 GCCATAGACATATGCTACATACACC 59.187 44.000 1.58 0.00 37.97 4.16
2861 3194 6.036470 CCATAGACATATGCTACATACACCG 58.964 44.000 1.58 0.00 37.97 4.94
2862 3195 6.350194 CCATAGACATATGCTACATACACCGT 60.350 42.308 1.58 0.00 37.97 4.83
2863 3196 5.531122 AGACATATGCTACATACACCGTT 57.469 39.130 1.58 0.00 0.00 4.44
2864 3197 5.914033 AGACATATGCTACATACACCGTTT 58.086 37.500 1.58 0.00 0.00 3.60
2865 3198 5.753438 AGACATATGCTACATACACCGTTTG 59.247 40.000 1.58 0.00 0.00 2.93
2866 3199 5.424757 ACATATGCTACATACACCGTTTGT 58.575 37.500 1.58 0.00 42.84 2.83
2867 3200 5.522460 ACATATGCTACATACACCGTTTGTC 59.478 40.000 1.58 0.00 39.91 3.18
2868 3201 3.671008 TGCTACATACACCGTTTGTCT 57.329 42.857 0.00 0.00 39.91 3.41
2869 3202 4.787260 TGCTACATACACCGTTTGTCTA 57.213 40.909 0.00 0.00 39.91 2.59
2870 3203 5.333299 TGCTACATACACCGTTTGTCTAT 57.667 39.130 0.00 0.00 39.91 1.98
2871 3204 5.345702 TGCTACATACACCGTTTGTCTATC 58.654 41.667 0.00 0.00 39.91 2.08
2872 3205 5.126545 TGCTACATACACCGTTTGTCTATCT 59.873 40.000 0.00 0.00 39.91 1.98
2873 3206 6.319405 TGCTACATACACCGTTTGTCTATCTA 59.681 38.462 0.00 0.00 39.91 1.98
2874 3207 7.148035 TGCTACATACACCGTTTGTCTATCTAA 60.148 37.037 0.00 0.00 39.91 2.10
2875 3208 7.378995 GCTACATACACCGTTTGTCTATCTAAG 59.621 40.741 0.00 0.00 39.91 2.18
2876 3209 6.040878 ACATACACCGTTTGTCTATCTAAGC 58.959 40.000 0.00 0.00 39.91 3.09
2877 3210 4.803098 ACACCGTTTGTCTATCTAAGCT 57.197 40.909 0.00 0.00 29.79 3.74
2878 3211 4.495422 ACACCGTTTGTCTATCTAAGCTG 58.505 43.478 0.00 0.00 29.79 4.24
2879 3212 3.307242 CACCGTTTGTCTATCTAAGCTGC 59.693 47.826 0.00 0.00 0.00 5.25
2880 3213 2.535984 CCGTTTGTCTATCTAAGCTGCG 59.464 50.000 0.00 0.00 0.00 5.18
2881 3214 2.034507 CGTTTGTCTATCTAAGCTGCGC 60.035 50.000 0.00 0.00 0.00 6.09
2882 3215 2.225068 TTGTCTATCTAAGCTGCGCC 57.775 50.000 4.18 0.00 0.00 6.53
2883 3216 1.403814 TGTCTATCTAAGCTGCGCCT 58.596 50.000 4.18 0.00 0.00 5.52
2884 3217 1.338337 TGTCTATCTAAGCTGCGCCTC 59.662 52.381 4.18 0.00 0.00 4.70
2885 3218 1.611491 GTCTATCTAAGCTGCGCCTCT 59.389 52.381 4.18 0.00 0.00 3.69
2886 3219 2.035321 GTCTATCTAAGCTGCGCCTCTT 59.965 50.000 4.18 10.77 0.00 2.85
2887 3220 2.695666 TCTATCTAAGCTGCGCCTCTTT 59.304 45.455 14.94 3.16 0.00 2.52
2888 3221 3.889538 TCTATCTAAGCTGCGCCTCTTTA 59.110 43.478 14.94 6.33 0.00 1.85
2889 3222 2.586258 TCTAAGCTGCGCCTCTTTAG 57.414 50.000 14.94 12.32 0.00 1.85
2890 3223 2.100197 TCTAAGCTGCGCCTCTTTAGA 58.900 47.619 14.94 14.07 0.00 2.10
2891 3224 2.496070 TCTAAGCTGCGCCTCTTTAGAA 59.504 45.455 14.94 0.00 0.00 2.10
2892 3225 2.185004 AAGCTGCGCCTCTTTAGAAA 57.815 45.000 4.18 0.00 0.00 2.52
2893 3226 1.443802 AGCTGCGCCTCTTTAGAAAC 58.556 50.000 4.18 0.00 0.00 2.78
2894 3227 1.156736 GCTGCGCCTCTTTAGAAACA 58.843 50.000 4.18 0.00 0.00 2.83
2895 3228 1.740025 GCTGCGCCTCTTTAGAAACAT 59.260 47.619 4.18 0.00 0.00 2.71
2896 3229 2.936498 GCTGCGCCTCTTTAGAAACATA 59.064 45.455 4.18 0.00 0.00 2.29
2897 3230 3.374058 GCTGCGCCTCTTTAGAAACATAA 59.626 43.478 4.18 0.00 0.00 1.90
2898 3231 4.035675 GCTGCGCCTCTTTAGAAACATAAT 59.964 41.667 4.18 0.00 0.00 1.28
2899 3232 5.236478 GCTGCGCCTCTTTAGAAACATAATA 59.764 40.000 4.18 0.00 0.00 0.98
2900 3233 6.238374 GCTGCGCCTCTTTAGAAACATAATAA 60.238 38.462 4.18 0.00 0.00 1.40
2901 3234 7.246674 TGCGCCTCTTTAGAAACATAATAAG 57.753 36.000 4.18 0.00 0.00 1.73
2902 3235 6.821665 TGCGCCTCTTTAGAAACATAATAAGT 59.178 34.615 4.18 0.00 0.00 2.24
2903 3236 7.982919 TGCGCCTCTTTAGAAACATAATAAGTA 59.017 33.333 4.18 0.00 0.00 2.24
2904 3237 8.274248 GCGCCTCTTTAGAAACATAATAAGTAC 58.726 37.037 0.00 0.00 0.00 2.73
2905 3238 9.530633 CGCCTCTTTAGAAACATAATAAGTACT 57.469 33.333 0.00 0.00 0.00 2.73
3077 3473 5.186021 TGCTCCTTCTTGGTGTAAACAAAAA 59.814 36.000 0.00 0.00 37.07 1.94
3154 3558 8.191446 TCCTCTGAATTTATCTTTACAGAGTCG 58.809 37.037 16.83 6.59 45.27 4.18
3155 3559 7.976734 CCTCTGAATTTATCTTTACAGAGTCGT 59.023 37.037 16.83 0.00 45.27 4.34
3156 3560 8.689251 TCTGAATTTATCTTTACAGAGTCGTG 57.311 34.615 0.00 0.00 30.36 4.35
3157 3561 8.304596 TCTGAATTTATCTTTACAGAGTCGTGT 58.695 33.333 0.00 1.70 30.36 4.49
3309 3714 9.615660 TCCATAAACATATAGGGAAGATGTAGT 57.384 33.333 0.00 0.00 33.09 2.73
3324 3729 3.671008 TGTAGTGCAACGGTAGTCATT 57.329 42.857 0.00 0.00 45.86 2.57
3349 3754 5.888982 TCTTGTTAAGAGGAGGAACTTGT 57.111 39.130 0.00 0.00 33.10 3.16
3495 3900 4.599500 ACCTCCCCCACAGGTGCT 62.599 66.667 0.00 0.00 43.10 4.40
3550 3955 4.416738 GGCTCCTCCACCAGGCAC 62.417 72.222 0.00 0.00 43.08 5.01
3670 4075 0.923358 TGTCCTGGTGGGTCAAACTT 59.077 50.000 0.00 0.00 36.25 2.66
3708 4121 4.365111 GTGGGGAGCCATGGTGCA 62.365 66.667 14.67 0.00 0.00 4.57
4469 4929 2.100916 GCAACTCGGCCTCTTATAGTGA 59.899 50.000 0.00 0.00 0.00 3.41
4677 5137 7.607991 ACATCTGTAAGTTTCCTTGACCTTATG 59.392 37.037 0.00 0.00 33.76 1.90
4716 5176 4.718940 ACACCTTTTTGTTTGACTGGAG 57.281 40.909 0.00 0.00 0.00 3.86
4723 5183 7.013369 ACCTTTTTGTTTGACTGGAGAGATAAC 59.987 37.037 0.00 0.00 0.00 1.89
4775 5235 0.463620 TGGCAAAACCTTGGAAGCAC 59.536 50.000 0.00 0.00 40.22 4.40
4818 5279 9.638239 GATTTTTCTTGGCAATACATGTTCTTA 57.362 29.630 2.30 0.00 0.00 2.10
4980 5448 3.900601 ACTGATGACATACCCTCAGGATC 59.099 47.826 0.00 0.00 39.52 3.36
4981 5449 3.242867 TGATGACATACCCTCAGGATCC 58.757 50.000 2.48 2.48 36.73 3.36
5014 5482 6.867816 TCATTGTCACATTGGCTGTTATTTTC 59.132 34.615 0.00 0.00 35.29 2.29
5125 5593 7.428020 TCTTTCACAATGACATTTTCAGGAAG 58.572 34.615 0.00 0.22 37.77 3.46
5126 5594 6.957920 TTCACAATGACATTTTCAGGAAGA 57.042 33.333 0.00 0.00 37.77 2.87
5127 5595 6.564709 TCACAATGACATTTTCAGGAAGAG 57.435 37.500 0.00 0.00 37.77 2.85
5128 5596 6.064060 TCACAATGACATTTTCAGGAAGAGT 58.936 36.000 0.00 0.00 37.77 3.24
5227 5700 1.076727 GGGCCCTGGTGCTACTTTT 59.923 57.895 17.04 0.00 0.00 2.27
5248 5721 2.024918 CCAAAGTCAGCAGCGTGTT 58.975 52.632 0.00 0.00 0.00 3.32
5249 5722 1.225855 CCAAAGTCAGCAGCGTGTTA 58.774 50.000 0.00 0.00 0.00 2.41
5282 5755 8.879427 ATTATGGAAGCTGTAAAAGTACCTTT 57.121 30.769 0.00 0.00 34.94 3.11
5316 5791 8.507249 CATGTTTTGAACTAAAAGAGAGGTAGG 58.493 37.037 0.00 0.00 38.85 3.18
5632 6112 7.280876 GCACCTGATTCTAGTGTTGATGATAAA 59.719 37.037 7.98 0.00 33.96 1.40
5815 6295 6.268847 AGAAATGTTAGTCTCTCTGACCTGTT 59.731 38.462 0.00 0.00 46.46 3.16
5824 6304 4.656112 TCTCTCTGACCTGTTCCTTTTCTT 59.344 41.667 0.00 0.00 0.00 2.52
5826 6306 5.755849 TCTCTGACCTGTTCCTTTTCTTTT 58.244 37.500 0.00 0.00 0.00 2.27
5938 6418 9.089601 TCGTTTCGTATGTCACAAAATATATGT 57.910 29.630 0.00 0.00 0.00 2.29
5987 6467 5.390991 CGACCTCCTTTTGCTGATAAAAGTC 60.391 44.000 13.07 6.98 43.02 3.01
6284 6770 3.121030 CCGCAAGTCCAGCCTTCG 61.121 66.667 0.00 0.00 0.00 3.79
6285 6771 3.121030 CGCAAGTCCAGCCTTCGG 61.121 66.667 0.00 0.00 0.00 4.30
6492 6978 7.276658 ACGAAGACTATGACAATGAAGAATGAC 59.723 37.037 0.00 0.00 0.00 3.06
6828 7314 2.751806 CCAGGTGGATTTTCTCTCTTGC 59.248 50.000 0.00 0.00 37.39 4.01
6874 7360 9.185192 GTGTTATTTGTGATTTTTCTCTTCCAG 57.815 33.333 0.00 0.00 0.00 3.86
6879 7365 4.141274 TGTGATTTTTCTCTTCCAGGTGGA 60.141 41.667 0.00 0.00 43.73 4.02
6891 7377 4.935352 TCCAGGTGGAATTTTTCACTTG 57.065 40.909 6.82 6.82 42.18 3.16
6892 7378 3.069443 TCCAGGTGGAATTTTTCACTTGC 59.931 43.478 8.03 0.00 42.18 4.01
6893 7379 3.070015 CCAGGTGGAATTTTTCACTTGCT 59.930 43.478 8.03 0.00 38.92 3.91
6894 7380 4.443315 CCAGGTGGAATTTTTCACTTGCTT 60.443 41.667 8.03 0.00 38.92 3.91
6895 7381 5.118286 CAGGTGGAATTTTTCACTTGCTTT 58.882 37.500 1.42 0.00 34.98 3.51
6896 7382 5.006941 CAGGTGGAATTTTTCACTTGCTTTG 59.993 40.000 1.42 0.00 34.98 2.77
6897 7383 4.273235 GGTGGAATTTTTCACTTGCTTTGG 59.727 41.667 1.93 0.00 34.57 3.28
6898 7384 4.875536 GTGGAATTTTTCACTTGCTTTGGT 59.124 37.500 0.00 0.00 0.00 3.67
6899 7385 4.874966 TGGAATTTTTCACTTGCTTTGGTG 59.125 37.500 0.00 0.00 35.06 4.17
6900 7386 5.115480 GGAATTTTTCACTTGCTTTGGTGA 58.885 37.500 0.00 0.00 40.17 4.02
6901 7387 5.759763 GGAATTTTTCACTTGCTTTGGTGAT 59.240 36.000 0.00 0.00 41.27 3.06
6902 7388 6.073602 GGAATTTTTCACTTGCTTTGGTGATC 60.074 38.462 0.00 0.00 41.27 2.92
6903 7389 4.998671 TTTTCACTTGCTTTGGTGATCA 57.001 36.364 0.00 0.00 41.27 2.92
6904 7390 4.998671 TTTCACTTGCTTTGGTGATCAA 57.001 36.364 0.00 0.00 41.27 2.57
6905 7391 3.988379 TCACTTGCTTTGGTGATCAAC 57.012 42.857 2.98 2.98 37.52 3.18
6952 7438 4.034285 TCTCTTCCTGGTGGGATTTTTC 57.966 45.455 0.00 0.00 44.66 2.29
6976 7462 6.906659 CACTTGCTTTAGTGATCAACAATCT 58.093 36.000 0.00 0.00 46.72 2.40
6978 7464 7.325338 CACTTGCTTTAGTGATCAACAATCTTG 59.675 37.037 0.00 0.00 46.72 3.02
6979 7465 6.882610 TGCTTTAGTGATCAACAATCTTGT 57.117 33.333 0.00 0.00 44.72 3.16
6980 7466 6.671190 TGCTTTAGTGATCAACAATCTTGTG 58.329 36.000 0.00 0.00 41.31 3.33
6981 7467 6.262944 TGCTTTAGTGATCAACAATCTTGTGT 59.737 34.615 0.00 0.00 41.31 3.72
6982 7468 7.141363 GCTTTAGTGATCAACAATCTTGTGTT 58.859 34.615 0.00 0.00 41.31 3.32
6983 7469 8.289618 GCTTTAGTGATCAACAATCTTGTGTTA 58.710 33.333 0.00 0.00 41.31 2.41
6988 7474 8.632679 AGTGATCAACAATCTTGTGTTATTTGT 58.367 29.630 0.00 0.00 41.31 2.83
6989 7475 8.693504 GTGATCAACAATCTTGTGTTATTTGTG 58.306 33.333 0.00 0.00 41.31 3.33
6990 7476 8.628280 TGATCAACAATCTTGTGTTATTTGTGA 58.372 29.630 0.00 0.00 41.31 3.58
6991 7477 9.462174 GATCAACAATCTTGTGTTATTTGTGAA 57.538 29.630 0.00 0.00 41.31 3.18
6992 7478 9.985730 ATCAACAATCTTGTGTTATTTGTGAAT 57.014 25.926 0.00 0.00 41.31 2.57
7009 7495 9.739276 ATTTGTGAATATTTCTCTTACAGGTGA 57.261 29.630 0.00 0.00 0.00 4.02
7010 7496 9.739276 TTTGTGAATATTTCTCTTACAGGTGAT 57.261 29.630 0.00 0.00 0.00 3.06
7022 7508 9.658799 TCTCTTACAGGTGATATTTTTCTCTTG 57.341 33.333 0.00 0.00 0.00 3.02
7023 7509 8.268850 TCTTACAGGTGATATTTTTCTCTTGC 57.731 34.615 0.00 0.00 0.00 4.01
7024 7510 8.103305 TCTTACAGGTGATATTTTTCTCTTGCT 58.897 33.333 0.00 0.00 0.00 3.91
7025 7511 9.383519 CTTACAGGTGATATTTTTCTCTTGCTA 57.616 33.333 0.00 0.00 0.00 3.49
7026 7512 9.733556 TTACAGGTGATATTTTTCTCTTGCTAA 57.266 29.630 0.00 0.00 0.00 3.09
7027 7513 8.273780 ACAGGTGATATTTTTCTCTTGCTAAG 57.726 34.615 0.00 0.00 0.00 2.18
7028 7514 7.885399 ACAGGTGATATTTTTCTCTTGCTAAGT 59.115 33.333 0.00 0.00 0.00 2.24
7155 7674 3.372025 GCTTTGGAGATATGTGGGAGGTT 60.372 47.826 0.00 0.00 0.00 3.50
7156 7675 4.860022 CTTTGGAGATATGTGGGAGGTTT 58.140 43.478 0.00 0.00 0.00 3.27
7191 7714 7.338800 AGCAAAATACTTGTGGGAATCATAG 57.661 36.000 0.00 0.00 0.00 2.23
7266 7794 1.531748 CGTGTTGGATAGGCCCCAT 59.468 57.895 0.00 0.00 34.97 4.00
7277 7805 2.353610 GGCCCCATCCACAAGCTTG 61.354 63.158 24.84 24.84 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 86 2.157085 GGCGTAGAAGAAAAACAGGTCG 59.843 50.000 0.00 0.00 0.00 4.79
92 95 4.319911 CCAAATTTGTCGGCGTAGAAGAAA 60.320 41.667 16.73 0.00 0.00 2.52
95 98 2.159572 CCCAAATTTGTCGGCGTAGAAG 60.160 50.000 16.73 0.00 0.00 2.85
102 105 1.211709 CGGACCCAAATTTGTCGGC 59.788 57.895 16.73 8.43 32.19 5.54
106 109 2.292292 CGAAAGACGGACCCAAATTTGT 59.708 45.455 16.73 0.00 38.46 2.83
147 150 3.723764 GTGCACGTCCGCATTTTTATATG 59.276 43.478 0.00 0.00 45.26 1.78
152 155 1.369930 CGTGCACGTCCGCATTTTT 60.370 52.632 30.50 0.00 45.26 1.94
173 176 0.870307 CCGTTTAGATCGGTCAGGCG 60.870 60.000 0.00 0.00 42.62 5.52
175 178 1.533338 CGTCCGTTTAGATCGGTCAGG 60.533 57.143 0.00 0.00 46.86 3.86
179 182 3.248266 CTTTTCGTCCGTTTAGATCGGT 58.752 45.455 4.36 0.00 46.86 4.69
186 189 1.139163 GTCCGCTTTTCGTCCGTTTA 58.861 50.000 0.00 0.00 36.19 2.01
191 194 1.750351 GTTTTGTCCGCTTTTCGTCC 58.250 50.000 0.00 0.00 36.19 4.79
203 206 2.953068 AAACGGACGCGCGTTTTGTC 62.953 55.000 38.03 23.19 35.15 3.18
205 208 2.351435 AAACGGACGCGCGTTTTG 60.351 55.556 38.03 28.98 35.15 2.44
220 223 4.257654 TCCAAGGCGCCGACCAAA 62.258 61.111 23.20 2.64 0.00 3.28
273 277 7.556733 TGTTTTGAGGAGTGTTAACGTAAAT 57.443 32.000 0.26 0.00 0.00 1.40
290 294 3.791973 AGATTGCCGTGTTTGTTTTGA 57.208 38.095 0.00 0.00 0.00 2.69
342 346 4.777896 TGTTGCTTTATCTGGGTAGAGAGT 59.222 41.667 0.00 0.00 36.14 3.24
346 350 3.370527 GGCTGTTGCTTTATCTGGGTAGA 60.371 47.826 0.00 0.00 39.59 2.59
347 351 2.945668 GGCTGTTGCTTTATCTGGGTAG 59.054 50.000 0.00 0.00 39.59 3.18
362 660 0.400213 TCGTCCATTCTTGGGCTGTT 59.600 50.000 0.00 0.00 46.04 3.16
364 662 1.019673 CATCGTCCATTCTTGGGCTG 58.980 55.000 0.00 0.00 46.04 4.85
633 947 0.179108 GACCGTAGAGTCCATGTGGC 60.179 60.000 0.00 0.00 34.44 5.01
635 949 3.489398 GCTAAGACCGTAGAGTCCATGTG 60.489 52.174 0.00 0.00 37.49 3.21
636 950 2.688958 GCTAAGACCGTAGAGTCCATGT 59.311 50.000 0.00 0.00 37.49 3.21
686 1005 2.359169 CGCTAAGCTCCTGGACCCA 61.359 63.158 0.00 0.00 0.00 4.51
1153 1475 1.178276 TGGCCGCCAATTTACGAAAT 58.822 45.000 10.50 0.00 0.00 2.17
1239 1561 1.065031 CGACAGCGCCCAAAAATTCG 61.065 55.000 2.29 0.00 0.00 3.34
1251 1574 5.993891 TCTACATACTATTTACCGACAGCG 58.006 41.667 0.00 0.00 37.24 5.18
1408 1731 1.202687 CGCATCCACCACCTACATCAT 60.203 52.381 0.00 0.00 0.00 2.45
1449 1772 3.542648 GTTAACAGGGTAGGCAGAATCC 58.457 50.000 0.00 0.00 0.00 3.01
1614 1938 8.392612 TGTTAACTTCGTTCCTTAAAGAACAAG 58.607 33.333 15.46 16.95 45.27 3.16
1778 2103 1.696097 AACACCGCAGAAGACCTGGT 61.696 55.000 0.00 0.00 43.13 4.00
1911 2236 3.211045 AGCACTTTGTACCAACAATCGT 58.789 40.909 0.00 0.00 44.85 3.73
2110 2443 0.962356 CCTGTTGTGGGCCAGATGTC 60.962 60.000 6.40 0.00 0.00 3.06
2196 2529 7.110810 CAGATTGGAGAATATACCATGCTCAT 58.889 38.462 0.00 0.00 36.02 2.90
2268 2601 3.440173 AGGATTCCATTGTACAGCAAACG 59.560 43.478 5.29 0.00 40.91 3.60
2369 2702 5.045286 ACAGGTCCTAGCAGATGAAGAAAAT 60.045 40.000 0.00 0.00 0.00 1.82
2397 2730 6.646653 AGCGATAGTATTCACATGTGGTTATG 59.353 38.462 25.16 8.14 39.35 1.90
2454 2787 3.282021 CATACTACAGTGCAAATGGCCT 58.718 45.455 3.32 0.00 43.89 5.19
2592 2925 6.506500 ACAAAATACAAGAGGAAGCTGATG 57.493 37.500 0.00 0.00 0.00 3.07
2610 2943 7.332557 TCTTAATCCGAGGCTGTATAACAAAA 58.667 34.615 0.00 0.00 0.00 2.44
2679 3012 9.322773 GAAAACTTACAAACTAGAACAGGTACT 57.677 33.333 0.00 0.00 43.88 2.73
2851 3184 7.067859 AGCTTAGATAGACAAACGGTGTATGTA 59.932 37.037 0.00 0.00 41.96 2.29
2852 3185 6.040878 GCTTAGATAGACAAACGGTGTATGT 58.959 40.000 0.00 0.00 41.96 2.29
2853 3186 6.199154 CAGCTTAGATAGACAAACGGTGTATG 59.801 42.308 0.00 0.00 41.96 2.39
2854 3187 6.273825 CAGCTTAGATAGACAAACGGTGTAT 58.726 40.000 0.00 0.00 41.96 2.29
2855 3188 5.647589 CAGCTTAGATAGACAAACGGTGTA 58.352 41.667 0.00 0.00 41.96 2.90
2856 3189 4.495422 CAGCTTAGATAGACAAACGGTGT 58.505 43.478 0.00 0.00 45.74 4.16
2857 3190 3.307242 GCAGCTTAGATAGACAAACGGTG 59.693 47.826 0.00 0.00 0.00 4.94
2858 3191 3.522553 GCAGCTTAGATAGACAAACGGT 58.477 45.455 0.00 0.00 0.00 4.83
2859 3192 2.535984 CGCAGCTTAGATAGACAAACGG 59.464 50.000 0.00 0.00 0.00 4.44
2860 3193 3.825498 CGCAGCTTAGATAGACAAACG 57.175 47.619 0.00 0.00 0.00 3.60
2876 3209 5.741388 ATTATGTTTCTAAAGAGGCGCAG 57.259 39.130 10.83 0.00 0.00 5.18
2877 3210 6.821665 ACTTATTATGTTTCTAAAGAGGCGCA 59.178 34.615 10.83 0.00 0.00 6.09
2878 3211 7.247929 ACTTATTATGTTTCTAAAGAGGCGC 57.752 36.000 0.00 0.00 0.00 6.53
2879 3212 9.530633 AGTACTTATTATGTTTCTAAAGAGGCG 57.469 33.333 0.00 0.00 0.00 5.52
2911 3244 9.586435 GAGCTATTTTGCCAACTACATTTAAAT 57.414 29.630 0.00 0.00 0.00 1.40
2912 3245 8.032451 GGAGCTATTTTGCCAACTACATTTAAA 58.968 33.333 0.00 0.00 0.00 1.52
2913 3246 7.177568 TGGAGCTATTTTGCCAACTACATTTAA 59.822 33.333 0.00 0.00 0.00 1.52
3016 3412 5.743872 GTCTGCAATTATTTTTAGCTTCGGG 59.256 40.000 0.00 0.00 0.00 5.14
3077 3473 8.088365 GGACCAAATAGTTCTACAATTTTGCTT 58.912 33.333 0.00 0.00 0.00 3.91
3153 3557 4.355437 TGCTCCAAACAATACAAAACACG 58.645 39.130 0.00 0.00 0.00 4.49
3154 3558 5.982516 TCATGCTCCAAACAATACAAAACAC 59.017 36.000 0.00 0.00 0.00 3.32
3155 3559 5.982516 GTCATGCTCCAAACAATACAAAACA 59.017 36.000 0.00 0.00 0.00 2.83
3156 3560 5.982516 TGTCATGCTCCAAACAATACAAAAC 59.017 36.000 0.00 0.00 0.00 2.43
3157 3561 5.982516 GTGTCATGCTCCAAACAATACAAAA 59.017 36.000 0.00 0.00 0.00 2.44
3283 3687 9.615660 ACTACATCTTCCCTATATGTTTATGGA 57.384 33.333 0.00 0.00 35.54 3.41
3290 3695 6.525629 GTTGCACTACATCTTCCCTATATGT 58.474 40.000 0.00 0.00 37.58 2.29
3309 3714 4.336993 ACAAGAAAAATGACTACCGTTGCA 59.663 37.500 0.00 0.00 0.00 4.08
3324 3729 7.116736 ACAAGTTCCTCCTCTTAACAAGAAAA 58.883 34.615 0.00 0.00 37.02 2.29
3349 3754 0.612174 AGCTCTGCTGACCTCGGTAA 60.612 55.000 0.00 0.00 37.57 2.85
3495 3900 3.030291 GGCATGGAAATATGGTGGTGAA 58.970 45.455 0.00 0.00 0.00 3.18
3550 3955 3.571590 AGCTAACAGGGTAGAGATGAGG 58.428 50.000 0.00 0.00 0.00 3.86
3670 4075 2.832129 CCTAACTTGTGCTCCTCTACCA 59.168 50.000 0.00 0.00 0.00 3.25
3708 4121 3.268072 CTCTCCAAGATTTCCCTTTCCCT 59.732 47.826 0.00 0.00 0.00 4.20
4214 4673 1.522092 CGCCAGAGTGCCAATCCTA 59.478 57.895 0.00 0.00 0.00 2.94
4469 4929 9.662947 AACTAAGAAAATATAAGCACGTAGGTT 57.337 29.630 0.00 0.00 41.60 3.50
4526 4986 9.521503 TGATATCAGAAAAAGATGTTAGTCGAG 57.478 33.333 0.00 0.00 0.00 4.04
4739 5199 9.435688 GGTTTTGCCATAATAATCAAGAAGTTT 57.564 29.630 0.00 0.00 37.17 2.66
4753 5213 2.968574 TGCTTCCAAGGTTTTGCCATAA 59.031 40.909 0.00 0.00 40.61 1.90
4915 5383 7.409697 CCATGTGATATTTGTAGTGTTACTGC 58.590 38.462 0.00 0.00 0.00 4.40
4980 5448 1.993956 TGTGACAATGAAAGGTGGGG 58.006 50.000 0.00 0.00 0.00 4.96
4981 5449 3.306225 CCAATGTGACAATGAAAGGTGGG 60.306 47.826 1.48 0.00 0.00 4.61
5014 5482 7.475771 TTTGTTTAGTAAAGCTGCAAATTGG 57.524 32.000 1.02 0.00 0.00 3.16
5125 5593 4.455606 AGCTAGCCCATATTTGTTGACTC 58.544 43.478 12.13 0.00 0.00 3.36
5126 5594 4.455606 GAGCTAGCCCATATTTGTTGACT 58.544 43.478 12.13 0.00 0.00 3.41
5127 5595 3.565902 GGAGCTAGCCCATATTTGTTGAC 59.434 47.826 12.13 0.00 0.00 3.18
5128 5596 3.459598 AGGAGCTAGCCCATATTTGTTGA 59.540 43.478 20.25 0.00 0.00 3.18
5227 5700 1.823470 ACGCTGCTGACTTTGGCAA 60.823 52.632 0.00 0.00 38.02 4.52
5282 5755 9.567776 TCTTTTAGTTCAAAACATGTATCAGGA 57.432 29.630 0.00 0.00 32.65 3.86
5316 5791 2.226437 CCACCACAAGACACATGCTTAC 59.774 50.000 0.00 0.00 0.00 2.34
5581 6061 2.298163 CAAATCTGGAACTTTGCTGGCT 59.702 45.455 0.00 0.00 0.00 4.75
5632 6112 3.910989 ACCTTACCTTCTTTTGCCAAGT 58.089 40.909 0.00 0.00 0.00 3.16
5913 6393 9.697250 AACATATATTTTGTGACATACGAAACG 57.303 29.630 0.00 0.00 43.59 3.60
5938 6418 2.096248 GGCGACATAAAATGGGGTGAA 58.904 47.619 0.00 0.00 33.60 3.18
6286 6772 0.036577 CACCACAGGAGCTGAAGGAG 60.037 60.000 0.00 0.00 35.46 3.69
6287 6773 0.471780 TCACCACAGGAGCTGAAGGA 60.472 55.000 0.00 0.00 35.46 3.36
6288 6774 0.321122 GTCACCACAGGAGCTGAAGG 60.321 60.000 0.00 0.00 36.70 3.46
6289 6775 0.321122 GGTCACCACAGGAGCTGAAG 60.321 60.000 0.00 0.00 35.18 3.02
6290 6776 1.754745 GGTCACCACAGGAGCTGAA 59.245 57.895 0.00 0.00 35.18 3.02
6291 6777 2.574018 CGGTCACCACAGGAGCTGA 61.574 63.158 0.00 0.00 35.18 4.26
6292 6778 2.047844 CGGTCACCACAGGAGCTG 60.048 66.667 0.00 0.00 37.52 4.24
6338 6824 4.331717 TCTTCTTTCAACTGTGAAACCGAC 59.668 41.667 0.00 0.00 46.48 4.79
6492 6978 2.279582 AAATCCACGCTAGAGTCACG 57.720 50.000 0.00 0.00 0.00 4.35
6624 7110 9.888878 CAATCAACATATGTCACATCCTAAATC 57.111 33.333 9.23 0.00 0.00 2.17
6841 7327 9.398170 AGAAAAATCACAAATAACACGAGATTG 57.602 29.630 0.00 0.00 0.00 2.67
6847 7333 7.860373 TGGAAGAGAAAAATCACAAATAACACG 59.140 33.333 0.00 0.00 0.00 4.49
6874 7360 4.273235 CCAAAGCAAGTGAAAAATTCCACC 59.727 41.667 0.00 0.00 34.00 4.61
6879 7365 6.347696 TGATCACCAAAGCAAGTGAAAAATT 58.652 32.000 0.00 0.00 45.54 1.82
6887 7373 4.586001 AGATTGTTGATCACCAAAGCAAGT 59.414 37.500 9.92 0.00 37.22 3.16
6888 7374 5.130292 AGATTGTTGATCACCAAAGCAAG 57.870 39.130 9.92 0.00 37.22 4.01
6889 7375 5.163426 ACAAGATTGTTGATCACCAAAGCAA 60.163 36.000 9.92 2.76 38.47 3.91
6890 7376 4.341806 ACAAGATTGTTGATCACCAAAGCA 59.658 37.500 9.92 0.00 38.47 3.91
6891 7377 4.682860 CACAAGATTGTTGATCACCAAAGC 59.317 41.667 9.92 5.57 39.91 3.51
6892 7378 5.835257 ACACAAGATTGTTGATCACCAAAG 58.165 37.500 9.92 3.66 39.91 2.77
6893 7379 5.850557 ACACAAGATTGTTGATCACCAAA 57.149 34.783 9.92 0.00 39.91 3.28
6894 7380 5.850557 AACACAAGATTGTTGATCACCAA 57.149 34.783 8.23 8.23 39.91 3.67
6895 7381 7.523293 AATAACACAAGATTGTTGATCACCA 57.477 32.000 0.00 0.00 40.04 4.17
6896 7382 7.867403 ACAAATAACACAAGATTGTTGATCACC 59.133 33.333 0.00 0.00 40.04 4.02
6897 7383 8.693504 CACAAATAACACAAGATTGTTGATCAC 58.306 33.333 0.00 0.00 40.04 3.06
6898 7384 8.628280 TCACAAATAACACAAGATTGTTGATCA 58.372 29.630 0.00 0.00 40.04 2.92
6899 7385 9.630098 ATCACAAATAACACAAGATTGTTGATC 57.370 29.630 0.00 0.00 40.04 2.92
6900 7386 9.985730 AATCACAAATAACACAAGATTGTTGAT 57.014 25.926 0.00 0.00 40.04 2.57
6939 7425 2.676748 AGCAAGTGAAAAATCCCACCA 58.323 42.857 0.00 0.00 34.00 4.17
6952 7438 6.906659 AGATTGTTGATCACTAAAGCAAGTG 58.093 36.000 0.00 7.37 46.78 3.16
6983 7469 9.739276 TCACCTGTAAGAGAAATATTCACAAAT 57.261 29.630 0.00 0.00 34.07 2.32
6984 7470 9.739276 ATCACCTGTAAGAGAAATATTCACAAA 57.261 29.630 0.00 0.00 34.07 2.83
6996 7482 9.658799 CAAGAGAAAAATATCACCTGTAAGAGA 57.341 33.333 0.00 0.00 34.07 3.10
6997 7483 8.394121 GCAAGAGAAAAATATCACCTGTAAGAG 58.606 37.037 0.00 0.00 34.07 2.85
6998 7484 8.103305 AGCAAGAGAAAAATATCACCTGTAAGA 58.897 33.333 0.00 0.00 34.07 2.10
6999 7485 8.273780 AGCAAGAGAAAAATATCACCTGTAAG 57.726 34.615 0.00 0.00 0.00 2.34
7000 7486 9.733556 TTAGCAAGAGAAAAATATCACCTGTAA 57.266 29.630 0.00 0.00 0.00 2.41
7001 7487 9.383519 CTTAGCAAGAGAAAAATATCACCTGTA 57.616 33.333 0.00 0.00 0.00 2.74
7002 7488 7.885399 ACTTAGCAAGAGAAAAATATCACCTGT 59.115 33.333 3.37 0.00 0.00 4.00
7003 7489 8.180267 CACTTAGCAAGAGAAAAATATCACCTG 58.820 37.037 3.37 0.00 0.00 4.00
7004 7490 8.103305 TCACTTAGCAAGAGAAAAATATCACCT 58.897 33.333 3.37 0.00 0.00 4.00
7005 7491 8.268850 TCACTTAGCAAGAGAAAAATATCACC 57.731 34.615 3.37 0.00 0.00 4.02
7014 7500 9.507329 AGATTGTTAATCACTTAGCAAGAGAAA 57.493 29.630 4.56 0.00 40.11 2.52
7015 7501 9.507329 AAGATTGTTAATCACTTAGCAAGAGAA 57.493 29.630 4.56 0.00 40.11 2.87
7016 7502 8.939929 CAAGATTGTTAATCACTTAGCAAGAGA 58.060 33.333 4.56 1.76 40.11 3.10
7017 7503 8.725148 ACAAGATTGTTAATCACTTAGCAAGAG 58.275 33.333 4.56 0.00 40.11 2.85
7018 7504 8.506437 CACAAGATTGTTAATCACTTAGCAAGA 58.494 33.333 0.00 0.00 40.11 3.02
7019 7505 8.292448 ACACAAGATTGTTAATCACTTAGCAAG 58.708 33.333 0.00 0.00 40.11 4.01
7020 7506 8.165239 ACACAAGATTGTTAATCACTTAGCAA 57.835 30.769 0.00 0.00 40.74 3.91
7021 7507 7.744087 ACACAAGATTGTTAATCACTTAGCA 57.256 32.000 0.00 0.00 39.91 3.49
7025 7511 9.897744 CACATAACACAAGATTGTTAATCACTT 57.102 29.630 0.00 0.00 43.47 3.16
7026 7512 9.066892 ACACATAACACAAGATTGTTAATCACT 57.933 29.630 0.00 0.00 43.47 3.41
7027 7513 9.117145 CACACATAACACAAGATTGTTAATCAC 57.883 33.333 0.00 0.00 43.47 3.06
7028 7514 9.061435 TCACACATAACACAAGATTGTTAATCA 57.939 29.630 0.00 0.00 43.47 2.57
7049 7535 5.507985 CCACCTGGAAGAGAAAAATTCACAC 60.508 44.000 0.00 0.00 37.39 3.82
7155 7674 7.462109 CAAGTATTTTGCTTGTTTGCACTAA 57.538 32.000 0.00 0.00 43.20 2.24
7191 7714 0.610232 AACCTGCTTCCTGCCATGTC 60.610 55.000 0.00 0.00 42.00 3.06
7249 7774 0.178990 GGATGGGGCCTATCCAACAC 60.179 60.000 36.26 14.48 42.93 3.32
7266 7794 0.884704 GAACCGCTCAAGCTTGTGGA 60.885 55.000 29.00 12.57 39.32 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.