Multiple sequence alignment - TraesCS1D01G310000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G310000 chr1D 100.000 6415 0 0 1 6415 405802335 405808749 0.000000e+00 11847.0
1 TraesCS1D01G310000 chr1B 94.148 2136 81 22 3744 5840 546148765 546150895 0.000000e+00 3212.0
2 TraesCS1D01G310000 chr1B 88.778 2602 177 42 783 3325 546146099 546148644 0.000000e+00 3081.0
3 TraesCS1D01G310000 chr1B 91.964 112 9 0 3456 3567 546148643 546148754 2.390000e-34 158.0
4 TraesCS1D01G310000 chr1B 78.838 241 21 18 243 468 546145511 546145736 1.120000e-27 135.0
5 TraesCS1D01G310000 chr1B 86.538 52 5 1 619 668 17676905 17676854 8.990000e-04 56.5
6 TraesCS1D01G310000 chr1A 86.784 2724 216 61 687 3322 501026133 501028800 0.000000e+00 2904.0
7 TraesCS1D01G310000 chr1A 93.219 1283 51 16 4576 5839 501030287 501031552 0.000000e+00 1855.0
8 TraesCS1D01G310000 chr1A 89.951 1025 55 10 3577 4561 501029179 501030195 0.000000e+00 1279.0
9 TraesCS1D01G310000 chr1A 89.189 222 23 1 3356 3576 501028923 501029144 6.340000e-70 276.0
10 TraesCS1D01G310000 chr1A 87.019 208 16 7 294 500 501024290 501024487 2.330000e-54 224.0
11 TraesCS1D01G310000 chr1A 87.500 112 3 4 1 102 501024013 501024123 1.130000e-22 119.0
12 TraesCS1D01G310000 chr1A 73.750 160 36 5 513 668 240493315 240493472 2.500000e-04 58.4
13 TraesCS1D01G310000 chr3D 94.595 518 22 2 5898 6415 591143904 591143393 0.000000e+00 797.0
14 TraesCS1D01G310000 chr3D 84.748 636 95 2 4765 5399 438061737 438062371 2.520000e-178 636.0
15 TraesCS1D01G310000 chr3D 84.578 415 62 2 1071 1484 438060823 438061236 1.660000e-110 411.0
16 TraesCS1D01G310000 chr2D 93.629 518 28 2 5898 6413 631831082 631831596 0.000000e+00 769.0
17 TraesCS1D01G310000 chr4D 93.922 510 28 1 5906 6415 4049990 4049484 0.000000e+00 767.0
18 TraesCS1D01G310000 chrUn 91.939 521 29 5 5903 6415 114974295 114973780 0.000000e+00 717.0
19 TraesCS1D01G310000 chrUn 82.677 762 101 21 3760 4502 29747579 29748328 0.000000e+00 647.0
20 TraesCS1D01G310000 chrUn 88.760 516 44 8 991 1502 29730424 29730929 2.540000e-173 619.0
21 TraesCS1D01G310000 chrUn 88.738 515 46 5 991 1502 29746429 29746934 2.540000e-173 619.0
22 TraesCS1D01G310000 chrUn 83.821 581 64 18 3760 4332 29731683 29732241 5.700000e-145 525.0
23 TraesCS1D01G310000 chr5D 91.715 519 38 4 5898 6413 503842527 503842011 0.000000e+00 715.0
24 TraesCS1D01G310000 chr3B 91.205 523 41 4 5898 6415 13017632 13018154 0.000000e+00 706.0
25 TraesCS1D01G310000 chr3B 91.120 518 28 3 5898 6415 139193634 139193135 0.000000e+00 686.0
26 TraesCS1D01G310000 chr3B 85.168 654 95 2 4765 5417 573498589 573499241 0.000000e+00 669.0
27 TraesCS1D01G310000 chr3B 83.816 414 67 0 1071 1484 573497649 573498062 1.680000e-105 394.0
28 TraesCS1D01G310000 chr3B 91.045 67 6 0 5836 5902 769598200 769598134 2.460000e-14 91.6
29 TraesCS1D01G310000 chr3B 88.060 67 8 0 5836 5902 769476268 769476202 5.330000e-11 80.5
30 TraesCS1D01G310000 chr3B 95.349 43 2 0 517 559 197479048 197479006 1.150000e-07 69.4
31 TraesCS1D01G310000 chr4B 83.377 758 98 21 3760 4502 667902223 667901479 0.000000e+00 676.0
32 TraesCS1D01G310000 chr4B 88.627 510 44 7 997 1502 667903502 667903003 5.500000e-170 608.0
33 TraesCS1D01G310000 chr7B 89.961 518 40 6 5898 6415 713417020 713416515 0.000000e+00 658.0
34 TraesCS1D01G310000 chr7B 88.100 521 53 3 5898 6415 713398714 713398200 1.530000e-170 610.0
35 TraesCS1D01G310000 chr3A 85.063 636 93 2 4765 5399 576282437 576283071 0.000000e+00 647.0
36 TraesCS1D01G310000 chr3A 84.337 415 61 4 1072 1484 576281457 576281869 2.790000e-108 403.0
37 TraesCS1D01G310000 chr5A 82.649 755 101 21 3760 4502 706218489 706219225 5.420000e-180 641.0
38 TraesCS1D01G310000 chr5A 88.760 516 44 8 991 1502 706217330 706217835 2.540000e-173 619.0
39 TraesCS1D01G310000 chr6B 80.255 157 24 5 507 657 593116415 593116570 1.890000e-20 111.0
40 TraesCS1D01G310000 chr2B 82.482 137 14 6 528 658 673240728 673240860 1.890000e-20 111.0
41 TraesCS1D01G310000 chr2B 97.436 39 0 1 5802 5839 734953140 734953178 1.490000e-06 65.8
42 TraesCS1D01G310000 chr2B 100.000 29 0 0 4813 4841 37341544 37341572 3.000000e-03 54.7
43 TraesCS1D01G310000 chr2A 72.559 379 78 24 4765 5130 732963925 732963560 4.090000e-17 100.0
44 TraesCS1D01G310000 chr5B 93.548 62 4 0 5837 5898 665938179 665938118 6.850000e-15 93.5
45 TraesCS1D01G310000 chr4A 73.333 240 46 18 4765 4995 713934389 713934619 8.920000e-09 73.1
46 TraesCS1D01G310000 chr4A 89.286 56 6 0 569 624 456298918 456298863 3.210000e-08 71.3
47 TraesCS1D01G310000 chr4A 92.857 42 1 2 5089 5130 713894002 713893963 6.950000e-05 60.2
48 TraesCS1D01G310000 chr7A 95.000 40 0 2 5088 5127 701694657 701694694 1.930000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G310000 chr1D 405802335 405808749 6414 False 11847.0 11847 100.000000 1 6415 1 chr1D.!!$F1 6414
1 TraesCS1D01G310000 chr1B 546145511 546150895 5384 False 1646.5 3212 88.432000 243 5840 4 chr1B.!!$F1 5597
2 TraesCS1D01G310000 chr1A 501024013 501031552 7539 False 1109.5 2904 88.943667 1 5839 6 chr1A.!!$F2 5838
3 TraesCS1D01G310000 chr3D 591143393 591143904 511 True 797.0 797 94.595000 5898 6415 1 chr3D.!!$R1 517
4 TraesCS1D01G310000 chr3D 438060823 438062371 1548 False 523.5 636 84.663000 1071 5399 2 chr3D.!!$F1 4328
5 TraesCS1D01G310000 chr2D 631831082 631831596 514 False 769.0 769 93.629000 5898 6413 1 chr2D.!!$F1 515
6 TraesCS1D01G310000 chr4D 4049484 4049990 506 True 767.0 767 93.922000 5906 6415 1 chr4D.!!$R1 509
7 TraesCS1D01G310000 chrUn 114973780 114974295 515 True 717.0 717 91.939000 5903 6415 1 chrUn.!!$R1 512
8 TraesCS1D01G310000 chrUn 29746429 29748328 1899 False 633.0 647 85.707500 991 4502 2 chrUn.!!$F2 3511
9 TraesCS1D01G310000 chrUn 29730424 29732241 1817 False 572.0 619 86.290500 991 4332 2 chrUn.!!$F1 3341
10 TraesCS1D01G310000 chr5D 503842011 503842527 516 True 715.0 715 91.715000 5898 6413 1 chr5D.!!$R1 515
11 TraesCS1D01G310000 chr3B 13017632 13018154 522 False 706.0 706 91.205000 5898 6415 1 chr3B.!!$F1 517
12 TraesCS1D01G310000 chr3B 573497649 573499241 1592 False 531.5 669 84.492000 1071 5417 2 chr3B.!!$F2 4346
13 TraesCS1D01G310000 chr4B 667901479 667903502 2023 True 642.0 676 86.002000 997 4502 2 chr4B.!!$R1 3505
14 TraesCS1D01G310000 chr7B 713416515 713417020 505 True 658.0 658 89.961000 5898 6415 1 chr7B.!!$R2 517
15 TraesCS1D01G310000 chr7B 713398200 713398714 514 True 610.0 610 88.100000 5898 6415 1 chr7B.!!$R1 517
16 TraesCS1D01G310000 chr3A 576281457 576283071 1614 False 525.0 647 84.700000 1072 5399 2 chr3A.!!$F1 4327
17 TraesCS1D01G310000 chr5A 706217330 706219225 1895 False 630.0 641 85.704500 991 4502 2 chr5A.!!$F1 3511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 286 0.036952 AGTGTGGATGCGACCTGAAG 60.037 55.000 0.00 0.0 0.00 3.02 F
1785 3891 0.097674 CTCCGTCGGTCGTTTCGTAT 59.902 55.000 11.88 0.0 37.94 3.06 F
2249 4386 0.249489 GGCCATGACGCTACTCGATT 60.249 55.000 0.00 0.0 41.67 3.34 F
3542 5789 0.523968 CACATGGATTCTTTGCGCCG 60.524 55.000 4.18 0.0 0.00 6.46 F
3660 5944 1.822990 CATCAGCCAGCCTCACAAAAT 59.177 47.619 0.00 0.0 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 3947 0.110678 TGTACCACCAAATCGGCCAA 59.889 50.000 2.24 0.0 39.03 4.52 R
3180 5337 0.324091 AGGCAAAGGAGGGAAGCATG 60.324 55.000 0.00 0.0 0.00 4.06 R
3726 6024 1.071699 TCGGGAAAGAGGACAAGTTGG 59.928 52.381 7.96 0.0 0.00 3.77 R
4763 7521 1.524621 GGCGGTGATCATGTCCTGG 60.525 63.158 0.00 0.0 0.00 4.45 R
5512 8290 2.044860 CCGTCGTCGCTTTATGAGATC 58.955 52.381 0.00 0.0 35.54 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.551883 AGAAAATCATGCCCAGTTGCC 59.448 47.619 0.00 0.00 0.00 4.52
27 28 0.614812 AAAATCATGCCCAGTTGCCC 59.385 50.000 0.00 0.00 0.00 5.36
29 30 1.259840 AATCATGCCCAGTTGCCCAC 61.260 55.000 0.00 0.00 0.00 4.61
30 31 2.444004 ATCATGCCCAGTTGCCCACA 62.444 55.000 0.00 0.00 0.00 4.17
31 32 2.283388 ATGCCCAGTTGCCCACAG 60.283 61.111 0.00 0.00 0.00 3.66
32 33 3.150903 ATGCCCAGTTGCCCACAGT 62.151 57.895 0.00 0.00 0.00 3.55
33 34 1.788518 ATGCCCAGTTGCCCACAGTA 61.789 55.000 0.00 0.00 0.00 2.74
63 71 1.070786 TCGCTCTCCCACCAAACAC 59.929 57.895 0.00 0.00 0.00 3.32
69 77 0.396417 CTCCCACCAAACACCAACCA 60.396 55.000 0.00 0.00 0.00 3.67
96 104 0.108585 AGCAAAAGGAGGCACGAGAA 59.891 50.000 0.00 0.00 0.00 2.87
99 107 2.223711 GCAAAAGGAGGCACGAGAAAAA 60.224 45.455 0.00 0.00 0.00 1.94
125 145 4.825634 CCATCTATTCTACTACACACCGGA 59.174 45.833 9.46 0.00 0.00 5.14
126 146 5.477291 CCATCTATTCTACTACACACCGGAT 59.523 44.000 9.46 0.00 0.00 4.18
127 147 6.657966 CCATCTATTCTACTACACACCGGATA 59.342 42.308 9.46 0.00 0.00 2.59
136 156 1.207329 ACACACCGGATAAGAGGAAGC 59.793 52.381 9.46 0.00 0.00 3.86
137 157 1.207089 CACACCGGATAAGAGGAAGCA 59.793 52.381 9.46 0.00 0.00 3.91
138 158 1.906574 ACACCGGATAAGAGGAAGCAA 59.093 47.619 9.46 0.00 0.00 3.91
139 159 2.093447 ACACCGGATAAGAGGAAGCAAG 60.093 50.000 9.46 0.00 0.00 4.01
140 160 1.486726 ACCGGATAAGAGGAAGCAAGG 59.513 52.381 9.46 0.00 0.00 3.61
141 161 1.486726 CCGGATAAGAGGAAGCAAGGT 59.513 52.381 0.00 0.00 0.00 3.50
142 162 2.698797 CCGGATAAGAGGAAGCAAGGTA 59.301 50.000 0.00 0.00 0.00 3.08
143 163 3.325135 CCGGATAAGAGGAAGCAAGGTAT 59.675 47.826 0.00 0.00 0.00 2.73
144 164 4.310769 CGGATAAGAGGAAGCAAGGTATG 58.689 47.826 0.00 0.00 0.00 2.39
145 165 4.039245 CGGATAAGAGGAAGCAAGGTATGA 59.961 45.833 0.00 0.00 0.00 2.15
146 166 5.279708 CGGATAAGAGGAAGCAAGGTATGAT 60.280 44.000 0.00 0.00 0.00 2.45
147 167 6.071334 CGGATAAGAGGAAGCAAGGTATGATA 60.071 42.308 0.00 0.00 0.00 2.15
148 168 7.100409 GGATAAGAGGAAGCAAGGTATGATAC 58.900 42.308 0.00 0.00 0.00 2.24
149 169 5.957771 AAGAGGAAGCAAGGTATGATACA 57.042 39.130 4.83 0.00 0.00 2.29
150 170 5.957771 AGAGGAAGCAAGGTATGATACAA 57.042 39.130 4.83 0.00 0.00 2.41
151 171 6.506538 AGAGGAAGCAAGGTATGATACAAT 57.493 37.500 4.83 0.00 0.00 2.71
152 172 6.529220 AGAGGAAGCAAGGTATGATACAATC 58.471 40.000 4.83 0.00 0.00 2.67
153 173 6.328672 AGAGGAAGCAAGGTATGATACAATCT 59.671 38.462 4.83 0.00 0.00 2.40
154 174 7.510685 AGAGGAAGCAAGGTATGATACAATCTA 59.489 37.037 4.83 0.00 0.00 1.98
155 175 8.034313 AGGAAGCAAGGTATGATACAATCTAA 57.966 34.615 4.83 0.00 0.00 2.10
156 176 8.494433 AGGAAGCAAGGTATGATACAATCTAAA 58.506 33.333 4.83 0.00 0.00 1.85
157 177 9.289782 GGAAGCAAGGTATGATACAATCTAAAT 57.710 33.333 4.83 0.00 0.00 1.40
159 179 8.539770 AGCAAGGTATGATACAATCTAAATCG 57.460 34.615 4.83 0.00 0.00 3.34
160 180 8.367911 AGCAAGGTATGATACAATCTAAATCGA 58.632 33.333 4.83 0.00 0.00 3.59
161 181 9.155975 GCAAGGTATGATACAATCTAAATCGAT 57.844 33.333 4.83 0.00 0.00 3.59
198 218 2.359850 AATCCATGCACGCCGTGT 60.360 55.556 19.57 0.00 35.75 4.49
201 221 1.366111 ATCCATGCACGCCGTGTTAC 61.366 55.000 19.57 2.56 35.75 2.50
210 230 1.336148 ACGCCGTGTTACGATCTGAAA 60.336 47.619 2.52 0.00 46.05 2.69
213 233 3.541516 CGCCGTGTTACGATCTGAAAATC 60.542 47.826 2.52 0.00 46.05 2.17
253 273 3.849911 ACGATCTGAATACACAGTGTGG 58.150 45.455 26.40 8.30 37.94 4.17
266 286 0.036952 AGTGTGGATGCGACCTGAAG 60.037 55.000 0.00 0.00 0.00 3.02
267 287 1.375908 TGTGGATGCGACCTGAAGC 60.376 57.895 0.00 0.00 0.00 3.86
274 294 0.874390 TGCGACCTGAAGCAAATCAC 59.126 50.000 0.00 0.00 40.78 3.06
275 295 0.874390 GCGACCTGAAGCAAATCACA 59.126 50.000 0.00 0.00 0.00 3.58
276 296 1.135859 GCGACCTGAAGCAAATCACAG 60.136 52.381 0.00 0.00 0.00 3.66
277 297 2.146342 CGACCTGAAGCAAATCACAGT 58.854 47.619 0.00 0.00 0.00 3.55
288 314 3.941483 GCAAATCACAGTAGTACCAGCAT 59.059 43.478 0.00 0.00 0.00 3.79
312 348 1.630878 CTAGAGGGAAGTGGTTTGGCT 59.369 52.381 0.00 0.00 0.00 4.75
331 367 0.249447 TATGCTTGACATCTCCGGCG 60.249 55.000 0.00 0.00 40.38 6.46
333 369 2.202932 CTTGACATCTCCGGCGGG 60.203 66.667 27.98 17.02 0.00 6.13
334 370 4.467084 TTGACATCTCCGGCGGGC 62.467 66.667 27.98 1.72 0.00 6.13
346 384 2.038837 GGCGGGCTTAGTCAACCAC 61.039 63.158 0.00 0.00 0.00 4.16
351 389 1.298859 GGCTTAGTCAACCACGCCAG 61.299 60.000 0.00 0.00 37.48 4.85
414 452 1.626356 GCAGCACCTGGTATCTCCCA 61.626 60.000 0.00 0.00 34.77 4.37
431 477 2.681778 AGAGGTCGGTGAGCCCTG 60.682 66.667 0.00 0.00 0.00 4.45
469 516 3.278574 TCAGACACCACCTGTTTTTCTG 58.721 45.455 0.00 0.00 31.03 3.02
475 522 2.301346 CCACCTGTTTTTCTGCTGTCT 58.699 47.619 0.00 0.00 0.00 3.41
476 523 2.033801 CCACCTGTTTTTCTGCTGTCTG 59.966 50.000 0.00 0.00 0.00 3.51
502 549 7.115378 GTGAAATGAAATGAACATCACAACTCC 59.885 37.037 0.00 0.00 0.00 3.85
503 550 5.649782 ATGAAATGAACATCACAACTCCC 57.350 39.130 0.00 0.00 0.00 4.30
504 551 3.826157 TGAAATGAACATCACAACTCCCC 59.174 43.478 0.00 0.00 0.00 4.81
505 552 3.814504 AATGAACATCACAACTCCCCT 57.185 42.857 0.00 0.00 0.00 4.79
506 553 2.859165 TGAACATCACAACTCCCCTC 57.141 50.000 0.00 0.00 0.00 4.30
507 554 2.338809 TGAACATCACAACTCCCCTCT 58.661 47.619 0.00 0.00 0.00 3.69
508 555 2.711009 TGAACATCACAACTCCCCTCTT 59.289 45.455 0.00 0.00 0.00 2.85
509 556 3.138283 TGAACATCACAACTCCCCTCTTT 59.862 43.478 0.00 0.00 0.00 2.52
510 557 3.146104 ACATCACAACTCCCCTCTTTG 57.854 47.619 0.00 0.00 0.00 2.77
511 558 2.443255 ACATCACAACTCCCCTCTTTGT 59.557 45.455 0.00 0.00 33.69 2.83
512 559 3.650942 ACATCACAACTCCCCTCTTTGTA 59.349 43.478 0.00 0.00 32.19 2.41
513 560 4.289672 ACATCACAACTCCCCTCTTTGTAT 59.710 41.667 0.00 0.00 32.19 2.29
514 561 4.553330 TCACAACTCCCCTCTTTGTATC 57.447 45.455 0.00 0.00 32.19 2.24
515 562 3.263425 TCACAACTCCCCTCTTTGTATCC 59.737 47.826 0.00 0.00 32.19 2.59
516 563 3.264450 CACAACTCCCCTCTTTGTATCCT 59.736 47.826 0.00 0.00 32.19 3.24
517 564 4.469945 CACAACTCCCCTCTTTGTATCCTA 59.530 45.833 0.00 0.00 32.19 2.94
518 565 4.470304 ACAACTCCCCTCTTTGTATCCTAC 59.530 45.833 0.00 0.00 31.65 3.18
519 566 4.628661 ACTCCCCTCTTTGTATCCTACT 57.371 45.455 0.00 0.00 0.00 2.57
520 567 4.290942 ACTCCCCTCTTTGTATCCTACTG 58.709 47.826 0.00 0.00 0.00 2.74
521 568 3.039011 TCCCCTCTTTGTATCCTACTGC 58.961 50.000 0.00 0.00 0.00 4.40
522 569 2.104963 CCCCTCTTTGTATCCTACTGCC 59.895 54.545 0.00 0.00 0.00 4.85
523 570 3.041946 CCCTCTTTGTATCCTACTGCCT 58.958 50.000 0.00 0.00 0.00 4.75
524 571 3.070302 CCCTCTTTGTATCCTACTGCCTC 59.930 52.174 0.00 0.00 0.00 4.70
525 572 3.070302 CCTCTTTGTATCCTACTGCCTCC 59.930 52.174 0.00 0.00 0.00 4.30
526 573 3.706594 CTCTTTGTATCCTACTGCCTCCA 59.293 47.826 0.00 0.00 0.00 3.86
527 574 4.298626 TCTTTGTATCCTACTGCCTCCAT 58.701 43.478 0.00 0.00 0.00 3.41
528 575 4.721776 TCTTTGTATCCTACTGCCTCCATT 59.278 41.667 0.00 0.00 0.00 3.16
529 576 4.689612 TTGTATCCTACTGCCTCCATTC 57.310 45.455 0.00 0.00 0.00 2.67
530 577 2.972713 TGTATCCTACTGCCTCCATTCC 59.027 50.000 0.00 0.00 0.00 3.01
531 578 2.503869 ATCCTACTGCCTCCATTCCT 57.496 50.000 0.00 0.00 0.00 3.36
532 579 3.637821 ATCCTACTGCCTCCATTCCTA 57.362 47.619 0.00 0.00 0.00 2.94
533 580 3.414759 TCCTACTGCCTCCATTCCTAA 57.585 47.619 0.00 0.00 0.00 2.69
534 581 3.731431 TCCTACTGCCTCCATTCCTAAA 58.269 45.455 0.00 0.00 0.00 1.85
535 582 4.307259 TCCTACTGCCTCCATTCCTAAAT 58.693 43.478 0.00 0.00 0.00 1.40
536 583 5.473273 TCCTACTGCCTCCATTCCTAAATA 58.527 41.667 0.00 0.00 0.00 1.40
537 584 6.091555 TCCTACTGCCTCCATTCCTAAATAT 58.908 40.000 0.00 0.00 0.00 1.28
538 585 7.253421 TCCTACTGCCTCCATTCCTAAATATA 58.747 38.462 0.00 0.00 0.00 0.86
539 586 7.737607 TCCTACTGCCTCCATTCCTAAATATAA 59.262 37.037 0.00 0.00 0.00 0.98
540 587 8.043710 CCTACTGCCTCCATTCCTAAATATAAG 58.956 40.741 0.00 0.00 0.00 1.73
541 588 7.394144 ACTGCCTCCATTCCTAAATATAAGT 57.606 36.000 0.00 0.00 0.00 2.24
542 589 8.506196 ACTGCCTCCATTCCTAAATATAAGTA 57.494 34.615 0.00 0.00 0.00 2.24
543 590 9.117223 ACTGCCTCCATTCCTAAATATAAGTAT 57.883 33.333 0.00 0.00 0.00 2.12
544 591 9.965902 CTGCCTCCATTCCTAAATATAAGTATT 57.034 33.333 0.00 0.00 31.89 1.89
545 592 9.959721 TGCCTCCATTCCTAAATATAAGTATTC 57.040 33.333 0.00 0.00 30.28 1.75
546 593 9.099454 GCCTCCATTCCTAAATATAAGTATTCG 57.901 37.037 0.00 0.00 30.28 3.34
565 612 9.448294 AGTATTCGTAGAGATTTCACGATAAAC 57.552 33.333 10.20 9.14 43.49 2.01
566 613 9.448294 GTATTCGTAGAGATTTCACGATAAACT 57.552 33.333 10.20 0.00 43.49 2.66
567 614 8.928270 ATTCGTAGAGATTTCACGATAAACTT 57.072 30.769 10.20 0.00 43.49 2.66
568 615 7.966157 TCGTAGAGATTTCACGATAAACTTC 57.034 36.000 6.77 0.00 39.58 3.01
569 616 7.532571 TCGTAGAGATTTCACGATAAACTTCA 58.467 34.615 6.77 0.00 39.58 3.02
570 617 8.188799 TCGTAGAGATTTCACGATAAACTTCAT 58.811 33.333 6.77 0.00 39.58 2.57
571 618 9.447040 CGTAGAGATTTCACGATAAACTTCATA 57.553 33.333 0.00 0.00 37.89 2.15
607 654 9.851686 ATGAGTGAATCTATAACCTAAAATGCA 57.148 29.630 0.00 0.00 0.00 3.96
608 655 9.851686 TGAGTGAATCTATAACCTAAAATGCAT 57.148 29.630 0.00 0.00 0.00 3.96
621 668 8.087982 ACCTAAAATGCATCTATGTACATTCG 57.912 34.615 14.77 6.10 31.75 3.34
622 669 7.715249 ACCTAAAATGCATCTATGTACATTCGT 59.285 33.333 14.77 0.00 31.75 3.85
623 670 9.203421 CCTAAAATGCATCTATGTACATTCGTA 57.797 33.333 14.77 0.53 31.75 3.43
633 680 3.754188 GTACATTCGTACGTGGTCTCT 57.246 47.619 16.05 0.00 38.77 3.10
634 681 4.864916 GTACATTCGTACGTGGTCTCTA 57.135 45.455 16.05 0.00 38.77 2.43
635 682 4.830912 GTACATTCGTACGTGGTCTCTAG 58.169 47.826 16.05 0.00 38.77 2.43
636 683 3.341823 ACATTCGTACGTGGTCTCTAGT 58.658 45.455 16.05 0.05 0.00 2.57
637 684 3.126514 ACATTCGTACGTGGTCTCTAGTG 59.873 47.826 16.05 2.86 0.00 2.74
638 685 2.749280 TCGTACGTGGTCTCTAGTGA 57.251 50.000 16.05 0.00 0.00 3.41
639 686 3.044235 TCGTACGTGGTCTCTAGTGAA 57.956 47.619 16.05 0.00 0.00 3.18
640 687 3.402110 TCGTACGTGGTCTCTAGTGAAA 58.598 45.455 16.05 0.00 0.00 2.69
641 688 4.005650 TCGTACGTGGTCTCTAGTGAAAT 58.994 43.478 16.05 0.00 0.00 2.17
642 689 4.093998 TCGTACGTGGTCTCTAGTGAAATC 59.906 45.833 16.05 0.00 0.00 2.17
643 690 4.094590 CGTACGTGGTCTCTAGTGAAATCT 59.905 45.833 7.22 0.00 0.00 2.40
644 691 4.705337 ACGTGGTCTCTAGTGAAATCTC 57.295 45.455 0.00 0.00 0.00 2.75
645 692 4.337145 ACGTGGTCTCTAGTGAAATCTCT 58.663 43.478 0.00 0.00 0.00 3.10
646 693 5.498393 ACGTGGTCTCTAGTGAAATCTCTA 58.502 41.667 0.00 0.00 0.00 2.43
647 694 5.354792 ACGTGGTCTCTAGTGAAATCTCTAC 59.645 44.000 0.00 0.00 0.00 2.59
648 695 5.354513 CGTGGTCTCTAGTGAAATCTCTACA 59.645 44.000 0.00 0.00 0.00 2.74
649 696 6.127980 CGTGGTCTCTAGTGAAATCTCTACAA 60.128 42.308 0.00 0.00 0.00 2.41
650 697 7.575155 CGTGGTCTCTAGTGAAATCTCTACAAA 60.575 40.741 0.00 0.00 0.00 2.83
651 698 7.757624 GTGGTCTCTAGTGAAATCTCTACAAAG 59.242 40.741 0.00 0.00 0.00 2.77
652 699 7.670140 TGGTCTCTAGTGAAATCTCTACAAAGA 59.330 37.037 0.00 0.00 0.00 2.52
653 700 7.971722 GGTCTCTAGTGAAATCTCTACAAAGAC 59.028 40.741 0.00 11.71 0.00 3.01
654 701 8.736244 GTCTCTAGTGAAATCTCTACAAAGACT 58.264 37.037 0.00 0.00 0.00 3.24
655 702 9.303116 TCTCTAGTGAAATCTCTACAAAGACTT 57.697 33.333 0.00 0.00 0.00 3.01
667 714 8.770828 TCTCTACAAAGACTTATTCAAAAACGG 58.229 33.333 0.00 0.00 0.00 4.44
668 715 7.867752 TCTACAAAGACTTATTCAAAAACGGG 58.132 34.615 0.00 0.00 0.00 5.28
669 716 5.838529 ACAAAGACTTATTCAAAAACGGGG 58.161 37.500 0.00 0.00 0.00 5.73
670 717 5.361571 ACAAAGACTTATTCAAAAACGGGGT 59.638 36.000 0.00 0.00 0.00 4.95
671 718 6.546772 ACAAAGACTTATTCAAAAACGGGGTA 59.453 34.615 0.00 0.00 0.00 3.69
672 719 7.231925 ACAAAGACTTATTCAAAAACGGGGTAT 59.768 33.333 0.00 0.00 0.00 2.73
673 720 7.770366 AAGACTTATTCAAAAACGGGGTATT 57.230 32.000 0.00 0.00 0.00 1.89
674 721 7.770366 AGACTTATTCAAAAACGGGGTATTT 57.230 32.000 0.00 0.00 0.00 1.40
675 722 7.823665 AGACTTATTCAAAAACGGGGTATTTC 58.176 34.615 0.00 0.00 0.00 2.17
676 723 7.668469 AGACTTATTCAAAAACGGGGTATTTCT 59.332 33.333 0.00 0.00 0.00 2.52
677 724 7.823665 ACTTATTCAAAAACGGGGTATTTCTC 58.176 34.615 0.00 0.00 0.00 2.87
678 725 7.449086 ACTTATTCAAAAACGGGGTATTTCTCA 59.551 33.333 0.00 0.00 0.00 3.27
679 726 6.850752 ATTCAAAAACGGGGTATTTCTCAT 57.149 33.333 0.00 0.00 0.00 2.90
680 727 5.637006 TCAAAAACGGGGTATTTCTCATG 57.363 39.130 0.00 0.00 0.00 3.07
681 728 4.082463 TCAAAAACGGGGTATTTCTCATGC 60.082 41.667 0.00 0.00 0.00 4.06
682 729 2.052782 AACGGGGTATTTCTCATGCC 57.947 50.000 0.00 0.00 0.00 4.40
683 730 0.916086 ACGGGGTATTTCTCATGCCA 59.084 50.000 0.00 0.00 0.00 4.92
684 731 1.494721 ACGGGGTATTTCTCATGCCAT 59.505 47.619 0.00 0.00 0.00 4.40
685 732 2.154462 CGGGGTATTTCTCATGCCATC 58.846 52.381 0.00 0.00 0.00 3.51
686 733 2.224621 CGGGGTATTTCTCATGCCATCT 60.225 50.000 0.00 0.00 0.00 2.90
687 734 3.007940 CGGGGTATTTCTCATGCCATCTA 59.992 47.826 0.00 0.00 0.00 1.98
688 735 4.583871 GGGGTATTTCTCATGCCATCTAG 58.416 47.826 0.00 0.00 0.00 2.43
689 736 4.566488 GGGGTATTTCTCATGCCATCTAGG 60.566 50.000 0.00 0.00 41.84 3.02
690 737 4.042187 GGGTATTTCTCATGCCATCTAGGT 59.958 45.833 0.00 0.00 40.61 3.08
691 738 5.456763 GGGTATTTCTCATGCCATCTAGGTT 60.457 44.000 0.00 0.00 40.61 3.50
692 739 5.471456 GGTATTTCTCATGCCATCTAGGTTG 59.529 44.000 0.00 0.00 40.61 3.77
693 740 3.565764 TTCTCATGCCATCTAGGTTGG 57.434 47.619 7.95 7.95 40.61 3.77
694 741 2.481441 TCTCATGCCATCTAGGTTGGT 58.519 47.619 12.47 0.00 40.61 3.67
695 742 2.846206 TCTCATGCCATCTAGGTTGGTT 59.154 45.455 12.47 1.30 40.61 3.67
696 743 2.947652 CTCATGCCATCTAGGTTGGTTG 59.052 50.000 12.47 10.76 40.61 3.77
697 744 2.575735 TCATGCCATCTAGGTTGGTTGA 59.424 45.455 12.47 12.30 40.61 3.18
698 745 2.787473 TGCCATCTAGGTTGGTTGAG 57.213 50.000 12.47 0.00 40.61 3.02
699 746 1.340017 TGCCATCTAGGTTGGTTGAGC 60.340 52.381 12.47 1.50 40.61 4.26
700 747 1.065126 GCCATCTAGGTTGGTTGAGCT 60.065 52.381 12.47 0.00 40.61 4.09
701 748 2.636830 CCATCTAGGTTGGTTGAGCTG 58.363 52.381 0.00 0.00 0.00 4.24
702 749 2.026822 CCATCTAGGTTGGTTGAGCTGT 60.027 50.000 0.00 0.00 0.00 4.40
703 750 2.839486 TCTAGGTTGGTTGAGCTGTG 57.161 50.000 0.00 0.00 0.00 3.66
715 762 3.306917 TGAGCTGTGGCAAATGATTTG 57.693 42.857 13.32 13.32 43.44 2.32
716 763 2.892215 TGAGCTGTGGCAAATGATTTGA 59.108 40.909 21.14 0.00 43.26 2.69
719 766 5.002464 AGCTGTGGCAAATGATTTGATAC 57.998 39.130 21.14 17.04 43.26 2.24
730 2435 6.377327 AATGATTTGATACCAAGGTTAGCG 57.623 37.500 0.00 0.00 33.23 4.26
744 2449 3.505680 AGGTTAGCGCAAATGAACATCAA 59.494 39.130 11.47 0.00 0.00 2.57
805 2773 1.555075 CTACACCAGTGGGCAGTACAT 59.445 52.381 15.21 0.00 37.90 2.29
852 2831 1.422161 AAGTTCAGTCTGCCTGCCCT 61.422 55.000 0.00 0.00 41.25 5.19
853 2832 1.673665 GTTCAGTCTGCCTGCCCTG 60.674 63.158 0.00 0.00 41.25 4.45
940 2919 1.843368 ATAAAGTCACCGAGGTCCGA 58.157 50.000 0.00 0.00 41.76 4.55
977 2956 2.446994 ACCGTCTCCACCAACCCA 60.447 61.111 0.00 0.00 0.00 4.51
978 2957 2.347490 CCGTCTCCACCAACCCAG 59.653 66.667 0.00 0.00 0.00 4.45
1541 3545 5.048013 CACGCCCCTCTTATTTTCTTTTTCT 60.048 40.000 0.00 0.00 0.00 2.52
1542 3546 5.538813 ACGCCCCTCTTATTTTCTTTTTCTT 59.461 36.000 0.00 0.00 0.00 2.52
1543 3547 6.041637 ACGCCCCTCTTATTTTCTTTTTCTTT 59.958 34.615 0.00 0.00 0.00 2.52
1559 3572 7.547722 TCTTTTTCTTTTCTTTCCCCTTTTTCG 59.452 33.333 0.00 0.00 0.00 3.46
1560 3573 4.316205 TCTTTTCTTTCCCCTTTTTCGC 57.684 40.909 0.00 0.00 0.00 4.70
1593 3606 2.024319 GGAGACAGACAGTGTGCGC 61.024 63.158 0.00 0.00 40.56 6.09
1614 3627 2.031919 TGCGTGCCATTTCGGAGT 59.968 55.556 0.00 0.00 36.56 3.85
1674 3765 1.544691 TCTTCTGTTAGGCGAGTGGAC 59.455 52.381 0.00 0.00 0.00 4.02
1760 3866 3.306206 CGTAGCCGTTCCAAAATGC 57.694 52.632 0.00 0.00 0.00 3.56
1761 3867 0.179174 CGTAGCCGTTCCAAAATGCC 60.179 55.000 0.00 0.00 0.00 4.40
1762 3868 0.885196 GTAGCCGTTCCAAAATGCCA 59.115 50.000 0.00 0.00 0.00 4.92
1763 3869 1.135402 GTAGCCGTTCCAAAATGCCAG 60.135 52.381 0.00 0.00 0.00 4.85
1764 3870 1.079888 GCCGTTCCAAAATGCCAGG 60.080 57.895 0.00 0.00 0.00 4.45
1765 3871 1.079888 CCGTTCCAAAATGCCAGGC 60.080 57.895 3.66 3.66 0.00 4.85
1766 3872 1.079888 CGTTCCAAAATGCCAGGCC 60.080 57.895 9.64 0.00 0.00 5.19
1767 3873 1.535204 CGTTCCAAAATGCCAGGCCT 61.535 55.000 9.64 0.00 0.00 5.19
1768 3874 0.247460 GTTCCAAAATGCCAGGCCTC 59.753 55.000 9.64 0.00 0.00 4.70
1769 3875 0.904394 TTCCAAAATGCCAGGCCTCC 60.904 55.000 9.64 0.00 0.00 4.30
1770 3876 2.713967 CCAAAATGCCAGGCCTCCG 61.714 63.158 9.64 0.00 0.00 4.63
1771 3877 1.978617 CAAAATGCCAGGCCTCCGT 60.979 57.895 9.64 0.00 0.00 4.69
1772 3878 1.678970 AAAATGCCAGGCCTCCGTC 60.679 57.895 9.64 0.00 0.00 4.79
1785 3891 0.097674 CTCCGTCGGTCGTTTCGTAT 59.902 55.000 11.88 0.00 37.94 3.06
1787 3893 0.636733 CCGTCGGTCGTTTCGTATTG 59.363 55.000 2.08 0.00 37.94 1.90
1803 3909 8.567221 GTTTCGTATTGATCTTGATTGTTTTCG 58.433 33.333 0.00 0.00 0.00 3.46
1805 3911 6.370442 TCGTATTGATCTTGATTGTTTTCGGT 59.630 34.615 0.00 0.00 0.00 4.69
1837 3943 2.684374 CAATGGATCGCAGGAACAATGA 59.316 45.455 0.00 0.00 0.00 2.57
1838 3944 2.028420 TGGATCGCAGGAACAATGAG 57.972 50.000 0.00 0.00 0.00 2.90
1840 3946 1.936547 GGATCGCAGGAACAATGAGTC 59.063 52.381 0.00 0.00 0.00 3.36
1841 3947 2.419297 GGATCGCAGGAACAATGAGTCT 60.419 50.000 0.00 0.00 0.00 3.24
1842 3948 2.839486 TCGCAGGAACAATGAGTCTT 57.161 45.000 0.00 0.00 0.00 3.01
1843 3949 2.416747 TCGCAGGAACAATGAGTCTTG 58.583 47.619 0.00 0.00 0.00 3.02
1867 3983 3.123959 CCGATTTGGTGGTACAGTAAACG 59.876 47.826 0.00 0.00 41.80 3.60
1897 4027 1.962807 TGTTGAAATGCCTCCTGTTGG 59.037 47.619 0.00 0.00 0.00 3.77
1934 4068 2.662156 GCACGTTGCTAGAGTACTGAAC 59.338 50.000 0.00 0.00 40.96 3.18
1945 4079 6.253083 GCTAGAGTACTGAACCGTTAATTGAC 59.747 42.308 0.00 0.00 0.00 3.18
1976 4110 9.567848 AGAATAAATAAACGTAAAATGCAGTGG 57.432 29.630 0.00 0.00 0.00 4.00
2005 4139 6.879276 ATAAATCATCATTGGTCAGCTCTG 57.121 37.500 0.00 0.00 0.00 3.35
2011 4145 2.568509 TCATTGGTCAGCTCTGATGTGA 59.431 45.455 2.62 3.41 42.18 3.58
2017 4151 1.761198 TCAGCTCTGATGTGATGAGGG 59.239 52.381 0.00 0.00 34.14 4.30
2029 4163 1.272092 TGATGAGGGGCCTTGAGTTTG 60.272 52.381 0.84 0.00 0.00 2.93
2094 4231 3.815809 TGCAAGTTGTACAAGTAGGCTT 58.184 40.909 26.97 17.16 34.82 4.35
2141 4278 7.234988 ACACATGGGGGTAGTAATAGTAATCTC 59.765 40.741 0.00 0.00 0.00 2.75
2147 4284 7.414984 GGGGGTAGTAATAGTAATCTCGATTCG 60.415 44.444 0.00 0.00 32.50 3.34
2148 4285 7.414984 GGGGTAGTAATAGTAATCTCGATTCGG 60.415 44.444 6.18 0.00 32.50 4.30
2149 4286 7.120432 GGGTAGTAATAGTAATCTCGATTCGGT 59.880 40.741 6.18 0.00 32.50 4.69
2168 4305 3.876914 CGGTATGCCATTTAAGCTTCAGA 59.123 43.478 0.00 0.00 34.09 3.27
2169 4306 4.516698 CGGTATGCCATTTAAGCTTCAGAT 59.483 41.667 0.00 0.00 34.09 2.90
2177 4314 7.176515 TGCCATTTAAGCTTCAGATTAAGACAA 59.823 33.333 0.00 0.00 37.23 3.18
2221 4358 5.647589 TGTTAGTTCAGATAATTCGACGCT 58.352 37.500 0.00 0.00 0.00 5.07
2226 4363 4.307443 TCAGATAATTCGACGCTCACAT 57.693 40.909 0.00 0.00 0.00 3.21
2231 4368 6.470556 CAGATAATTCGACGCTCACATATAGG 59.529 42.308 0.00 0.00 0.00 2.57
2249 4386 0.249489 GGCCATGACGCTACTCGATT 60.249 55.000 0.00 0.00 41.67 3.34
2251 4388 1.269309 GCCATGACGCTACTCGATTCT 60.269 52.381 0.00 0.00 41.67 2.40
2258 4395 6.807708 TGACGCTACTCGATTCTTTTATTC 57.192 37.500 0.00 0.00 41.67 1.75
2262 4399 6.968904 ACGCTACTCGATTCTTTTATTCGTAA 59.031 34.615 0.00 0.00 41.67 3.18
2337 4474 5.391312 AAACTGTATGACATTTTGGCCTC 57.609 39.130 3.32 0.00 31.13 4.70
2340 4477 2.311542 TGTATGACATTTTGGCCTCCCT 59.688 45.455 3.32 0.00 0.00 4.20
2343 4480 1.177401 GACATTTTGGCCTCCCTGTC 58.823 55.000 3.32 8.73 0.00 3.51
2412 4559 4.882671 AATGACACTGCTATTTAAGGCG 57.117 40.909 0.00 0.00 0.00 5.52
2471 4618 4.070716 AGCCAGAAATCTTGACTTGACTG 58.929 43.478 0.00 0.00 0.00 3.51
2496 4643 7.889600 TGTCATGGCCACACAAATCATATATAT 59.110 33.333 8.16 0.00 0.00 0.86
2497 4644 8.186163 GTCATGGCCACACAAATCATATATATG 58.814 37.037 8.16 15.47 35.04 1.78
2551 4704 5.822519 TCACCAATGTTATGAATGTAGCTCC 59.177 40.000 0.00 0.00 0.00 4.70
2555 4708 7.445402 ACCAATGTTATGAATGTAGCTCCATAC 59.555 37.037 0.00 0.00 0.00 2.39
2559 4712 6.099701 TGTTATGAATGTAGCTCCATACTGGT 59.900 38.462 0.00 0.00 39.03 4.00
2647 4800 4.022329 GCTTACCTTGTACTGTTTGGCAAT 60.022 41.667 0.00 0.00 0.00 3.56
2680 4833 9.090692 CATGTTTTATCTGCCCAAAAATCTTAG 57.909 33.333 0.00 0.00 0.00 2.18
2695 4848 3.953712 TCTTAGCTTGATGTCCGACAA 57.046 42.857 5.07 0.00 0.00 3.18
2698 4851 2.550830 AGCTTGATGTCCGACAAACT 57.449 45.000 5.07 0.00 0.00 2.66
2707 4860 2.354510 TGTCCGACAAACTGAGCTTTTG 59.645 45.455 7.64 7.64 39.44 2.44
2710 4863 3.064820 TCCGACAAACTGAGCTTTTGTTC 59.935 43.478 14.51 8.39 45.16 3.18
2713 4866 4.438797 CGACAAACTGAGCTTTTGTTCATG 59.561 41.667 14.51 6.90 45.16 3.07
2723 4876 3.328505 CTTTTGTTCATGGCAATGGACC 58.671 45.455 10.19 0.00 41.11 4.46
2730 4883 5.368230 TGTTCATGGCAATGGACCTATACTA 59.632 40.000 10.19 0.00 41.11 1.82
2737 4890 6.666546 TGGCAATGGACCTATACTAGTATACC 59.333 42.308 17.03 16.51 0.00 2.73
2777 4930 6.820656 AGATTGATGATAGTTTCAGGTGTGAC 59.179 38.462 0.00 0.00 37.89 3.67
2790 4943 3.067180 CAGGTGTGACTTTGACTGCAATT 59.933 43.478 0.00 0.00 33.25 2.32
2824 4977 7.401955 TTTAGTCCTTAGGCAGTCTTACTAC 57.598 40.000 0.00 0.00 0.00 2.73
2833 4986 4.020218 AGGCAGTCTTACTACAGCATTTGA 60.020 41.667 0.00 0.00 33.87 2.69
2856 5009 9.958180 TTGAGTTATTGGTATTTGATTGAGAGA 57.042 29.630 0.00 0.00 0.00 3.10
2857 5010 9.383519 TGAGTTATTGGTATTTGATTGAGAGAC 57.616 33.333 0.00 0.00 0.00 3.36
2907 5060 6.779860 AGTTAACTGGTATCACAAGTCCAAT 58.220 36.000 7.48 0.00 0.00 3.16
2909 5062 8.548877 AGTTAACTGGTATCACAAGTCCAATAT 58.451 33.333 7.48 0.00 0.00 1.28
2939 5095 8.408043 AGTCCAAGATGTGAAATGTTTATCAA 57.592 30.769 0.00 0.00 0.00 2.57
2942 5098 6.532657 CCAAGATGTGAAATGTTTATCAAGGC 59.467 38.462 0.00 0.00 0.00 4.35
2943 5099 7.318141 CAAGATGTGAAATGTTTATCAAGGCT 58.682 34.615 0.00 0.00 0.00 4.58
2951 5107 4.551702 TGTTTATCAAGGCTCTAGCACA 57.448 40.909 4.07 0.00 44.36 4.57
2952 5108 4.253685 TGTTTATCAAGGCTCTAGCACAC 58.746 43.478 4.07 0.00 44.36 3.82
2953 5109 4.020218 TGTTTATCAAGGCTCTAGCACACT 60.020 41.667 4.07 0.00 44.36 3.55
2956 5112 1.970640 TCAAGGCTCTAGCACACTGAA 59.029 47.619 4.07 0.00 44.36 3.02
2969 5125 3.581755 CACACTGAAATGGCAAGGAATG 58.418 45.455 0.00 0.00 0.00 2.67
2981 5137 4.646945 TGGCAAGGAATGTTTGTTCAGTAA 59.353 37.500 0.00 0.00 0.00 2.24
3065 5222 3.444029 TCTCATTGATGGTCTCTGGTCA 58.556 45.455 0.00 0.00 0.00 4.02
3069 5226 0.610174 TGATGGTCTCTGGTCAGTGC 59.390 55.000 0.00 0.00 0.00 4.40
3099 5256 4.796312 GCACACACACGAATTAAAACTTGT 59.204 37.500 0.00 0.00 0.00 3.16
3117 5274 8.628882 AAACTTGTTTTCACTTATTGTACTGC 57.371 30.769 0.00 0.00 0.00 4.40
3134 5291 2.428171 ACTGCGCATTATGCTCCAAATT 59.572 40.909 12.24 0.00 42.25 1.82
3174 5331 8.877779 CAGGAATATGCTAGACTAATTACATGC 58.122 37.037 0.00 0.00 0.00 4.06
3180 5337 7.496529 TGCTAGACTAATTACATGCCATTTC 57.503 36.000 0.00 0.00 0.00 2.17
3192 5349 0.749049 GCCATTTCATGCTTCCCTCC 59.251 55.000 0.00 0.00 0.00 4.30
3193 5350 1.687368 GCCATTTCATGCTTCCCTCCT 60.687 52.381 0.00 0.00 0.00 3.69
3194 5351 2.743553 CCATTTCATGCTTCCCTCCTT 58.256 47.619 0.00 0.00 0.00 3.36
3207 5364 0.991920 CCTCCTTTGCCTCAACCCTA 59.008 55.000 0.00 0.00 0.00 3.53
3217 5374 7.147672 CCTTTGCCTCAACCCTATTATTTCAAT 60.148 37.037 0.00 0.00 0.00 2.57
3263 5420 5.751243 TTTTTCACCCTTCTCTTTCTTCG 57.249 39.130 0.00 0.00 0.00 3.79
3280 5437 5.022282 TCTTCGAAATACATCTGGCATCA 57.978 39.130 0.00 0.00 0.00 3.07
3282 5439 4.135747 TCGAAATACATCTGGCATCACA 57.864 40.909 0.00 0.00 0.00 3.58
3299 5456 9.752961 TGGCATCACATTTAATTTCATATTCAG 57.247 29.630 0.00 0.00 0.00 3.02
3323 5480 9.755064 CAGTGTGTGTTTTAGTATTAATGTAGC 57.245 33.333 0.00 0.00 0.00 3.58
3324 5481 9.496873 AGTGTGTGTTTTAGTATTAATGTAGCA 57.503 29.630 0.00 0.00 0.00 3.49
3345 5502 6.901699 GCAAATTCATGCGAATGTATAGTC 57.098 37.500 2.58 0.00 41.12 2.59
3346 5503 6.662616 GCAAATTCATGCGAATGTATAGTCT 58.337 36.000 2.58 0.00 41.12 3.24
3348 5505 7.112565 GCAAATTCATGCGAATGTATAGTCTTG 59.887 37.037 2.58 2.45 41.12 3.02
3350 5507 8.887036 AATTCATGCGAATGTATAGTCTTGTA 57.113 30.769 2.58 0.00 41.12 2.41
3351 5508 7.930513 TTCATGCGAATGTATAGTCTTGTAG 57.069 36.000 2.58 0.00 0.00 2.74
3352 5509 5.920840 TCATGCGAATGTATAGTCTTGTAGC 59.079 40.000 2.58 0.00 0.00 3.58
3354 5511 3.669122 GCGAATGTATAGTCTTGTAGCGG 59.331 47.826 0.00 0.00 0.00 5.52
3378 5625 6.926272 GGTAGCCTTCTCTCTATAACATGTTG 59.074 42.308 21.42 4.68 0.00 3.33
3379 5626 6.798427 AGCCTTCTCTCTATAACATGTTGA 57.202 37.500 21.42 8.99 0.00 3.18
3381 5628 7.800092 AGCCTTCTCTCTATAACATGTTGATT 58.200 34.615 21.42 8.35 0.00 2.57
3426 5673 8.900983 AGCATATATCCAGAAGAAGAAGAAAC 57.099 34.615 0.00 0.00 0.00 2.78
3480 5727 4.075682 TCTTTGTCAGTGAACACCAACAA 58.924 39.130 14.34 14.34 35.67 2.83
3481 5728 3.840890 TTGTCAGTGAACACCAACAAC 57.159 42.857 14.34 3.64 33.86 3.32
3517 5764 2.165437 GGGTTTGCTTGTGTTCAACTGA 59.835 45.455 0.00 0.00 0.00 3.41
3542 5789 0.523968 CACATGGATTCTTTGCGCCG 60.524 55.000 4.18 0.00 0.00 6.46
3627 5911 9.643693 AACATTTATTGTTCTATCTTTTGGCTG 57.356 29.630 0.00 0.00 45.55 4.85
3629 5913 9.294030 CATTTATTGTTCTATCTTTTGGCTGTC 57.706 33.333 0.00 0.00 0.00 3.51
3630 5914 7.994425 TTATTGTTCTATCTTTTGGCTGTCA 57.006 32.000 0.00 0.00 0.00 3.58
3648 5932 4.650734 TGTCACTGTTAATTCATCAGCCA 58.349 39.130 4.94 0.00 33.12 4.75
3660 5944 1.822990 CATCAGCCAGCCTCACAAAAT 59.177 47.619 0.00 0.00 0.00 1.82
3666 5950 2.867647 GCCAGCCTCACAAAATGGAAAC 60.868 50.000 0.00 0.00 32.55 2.78
3735 6033 8.936070 AAGTTTAAACCATAAACCAACTTGTC 57.064 30.769 14.72 0.00 37.96 3.18
3754 6052 4.346730 TGTCCTCTTTCCCGACAGTATTA 58.653 43.478 0.00 0.00 32.85 0.98
4213 6781 6.240351 GGGTATGTAGGATGCCCCTTTATAAA 60.240 42.308 0.00 0.00 44.85 1.40
4322 6920 6.015350 TGTCTTCGTAGTTCTTCCATTCTTCT 60.015 38.462 0.00 0.00 0.00 2.85
4419 7093 8.428063 AGATTCAGTAGATCAATTTAGGTGAGG 58.572 37.037 0.00 0.00 0.00 3.86
4504 7178 8.879427 AGTTGGAAATTAGGTAGTGCTTTATT 57.121 30.769 0.00 0.00 0.00 1.40
4605 7357 6.931840 GGACGCCTCTTCATATTTCTATCTTT 59.068 38.462 0.00 0.00 0.00 2.52
4648 7406 5.870706 TCATACCGGCAAATCAATACCATA 58.129 37.500 0.00 0.00 0.00 2.74
4722 7480 7.650903 GCCTGATAATCTCATTTGGCTTTTTAG 59.349 37.037 0.00 0.00 38.86 1.85
4763 7521 6.833933 ACCAAATACCATCCCTTTCTTATGTC 59.166 38.462 0.00 0.00 0.00 3.06
5417 8175 0.324738 TCCCGGTTGAGATCTGAGCT 60.325 55.000 0.00 0.00 0.00 4.09
5420 8181 0.175302 CGGTTGAGATCTGAGCTGCT 59.825 55.000 0.00 0.00 0.00 4.24
5423 8184 2.008329 GTTGAGATCTGAGCTGCTTGG 58.992 52.381 2.53 0.00 0.00 3.61
5424 8185 1.565067 TGAGATCTGAGCTGCTTGGA 58.435 50.000 2.53 5.78 0.00 3.53
5425 8186 1.481363 TGAGATCTGAGCTGCTTGGAG 59.519 52.381 2.53 0.62 0.00 3.86
5428 8189 0.982704 ATCTGAGCTGCTTGGAGTGT 59.017 50.000 2.53 0.00 0.00 3.55
5430 8191 0.873054 CTGAGCTGCTTGGAGTGTTG 59.127 55.000 2.53 0.00 0.00 3.33
5431 8192 1.168407 TGAGCTGCTTGGAGTGTTGC 61.168 55.000 2.53 0.00 0.00 4.17
5432 8193 1.860484 GAGCTGCTTGGAGTGTTGCC 61.860 60.000 2.53 0.00 0.00 4.52
5434 8195 2.203480 TGCTTGGAGTGTTGCCCC 60.203 61.111 0.00 0.00 0.00 5.80
5435 8196 3.365265 GCTTGGAGTGTTGCCCCG 61.365 66.667 0.00 0.00 0.00 5.73
5436 8197 3.365265 CTTGGAGTGTTGCCCCGC 61.365 66.667 0.00 0.00 0.00 6.13
5437 8198 3.850098 CTTGGAGTGTTGCCCCGCT 62.850 63.158 0.00 0.00 0.00 5.52
5512 8290 3.803778 GTGTTTGACTGCCTTTTGAATGG 59.196 43.478 0.00 0.00 0.00 3.16
5562 8340 5.696724 CGCAGATCGTTTCTCCCTTTATTAT 59.303 40.000 0.00 0.00 29.93 1.28
5563 8341 6.202954 CGCAGATCGTTTCTCCCTTTATTATT 59.797 38.462 0.00 0.00 29.93 1.40
5564 8342 7.384115 CGCAGATCGTTTCTCCCTTTATTATTA 59.616 37.037 0.00 0.00 29.93 0.98
5566 8344 9.209175 CAGATCGTTTCTCCCTTTATTATTAGG 57.791 37.037 0.00 0.00 29.93 2.69
5568 8346 9.557061 GATCGTTTCTCCCTTTATTATTAGGTT 57.443 33.333 0.00 0.00 0.00 3.50
5569 8347 9.916360 ATCGTTTCTCCCTTTATTATTAGGTTT 57.084 29.630 0.00 0.00 0.00 3.27
5571 8349 9.999009 CGTTTCTCCCTTTATTATTAGGTTTTC 57.001 33.333 0.00 0.00 0.00 2.29
5572 8350 9.999009 GTTTCTCCCTTTATTATTAGGTTTTCG 57.001 33.333 0.00 0.00 0.00 3.46
5573 8351 9.743581 TTTCTCCCTTTATTATTAGGTTTTCGT 57.256 29.630 0.00 0.00 0.00 3.85
5574 8352 9.743581 TTCTCCCTTTATTATTAGGTTTTCGTT 57.256 29.630 0.00 0.00 0.00 3.85
5575 8353 9.387257 TCTCCCTTTATTATTAGGTTTTCGTTC 57.613 33.333 0.00 0.00 0.00 3.95
5576 8354 8.200364 TCCCTTTATTATTAGGTTTTCGTTCG 57.800 34.615 0.00 0.00 0.00 3.95
5692 8471 2.507547 GGCACCGATCGCACGTTA 60.508 61.111 10.32 0.00 0.00 3.18
5698 8478 1.518572 CGATCGCACGTTAAGGCCT 60.519 57.895 0.00 0.00 0.00 5.19
5701 8481 1.024579 ATCGCACGTTAAGGCCTTGG 61.025 55.000 28.77 18.41 0.00 3.61
5726 8506 3.394606 AGAAGCTTTGGAAACCTGAGGTA 59.605 43.478 3.68 0.00 33.12 3.08
5758 8541 2.390696 TCATGGGCCCATTCATTTCAG 58.609 47.619 35.69 20.53 33.90 3.02
5762 8545 2.978278 TGGGCCCATTCATTTCAGTTTT 59.022 40.909 24.45 0.00 0.00 2.43
5792 8575 2.276201 TCTCACGGCAATGTTTATCGG 58.724 47.619 0.00 0.00 0.00 4.18
5819 8602 3.292460 CCTAAGGGTGTGTTTGGTTTGA 58.708 45.455 0.00 0.00 0.00 2.69
5856 8639 8.732746 AATGAATGTTAAAATAGGTCTAGCGT 57.267 30.769 0.00 0.00 0.00 5.07
5857 8640 7.534085 TGAATGTTAAAATAGGTCTAGCGTG 57.466 36.000 0.00 0.00 0.00 5.34
5858 8641 7.101054 TGAATGTTAAAATAGGTCTAGCGTGT 58.899 34.615 0.00 0.00 0.00 4.49
5859 8642 7.277098 TGAATGTTAAAATAGGTCTAGCGTGTC 59.723 37.037 0.00 0.00 0.00 3.67
5860 8643 6.028146 TGTTAAAATAGGTCTAGCGTGTCA 57.972 37.500 0.00 0.00 0.00 3.58
5861 8644 5.865552 TGTTAAAATAGGTCTAGCGTGTCAC 59.134 40.000 0.00 0.00 0.00 3.67
5862 8645 2.846039 AATAGGTCTAGCGTGTCACG 57.154 50.000 21.02 21.02 45.88 4.35
5863 8646 1.747709 ATAGGTCTAGCGTGTCACGT 58.252 50.000 25.18 14.80 44.73 4.49
5864 8647 0.800631 TAGGTCTAGCGTGTCACGTG 59.199 55.000 25.18 9.94 44.73 4.49
5865 8648 2.087009 GGTCTAGCGTGTCACGTGC 61.087 63.158 25.18 10.71 44.73 5.34
5866 8649 1.371267 GTCTAGCGTGTCACGTGCA 60.371 57.895 25.18 9.70 44.73 4.57
5867 8650 0.732880 GTCTAGCGTGTCACGTGCAT 60.733 55.000 25.18 12.29 44.73 3.96
5868 8651 0.732538 TCTAGCGTGTCACGTGCATG 60.733 55.000 25.18 20.73 44.73 4.06
5869 8652 1.006688 TAGCGTGTCACGTGCATGT 60.007 52.632 25.18 5.51 44.73 3.21
5870 8653 0.241481 TAGCGTGTCACGTGCATGTA 59.759 50.000 25.18 15.72 44.73 2.29
5871 8654 1.129809 GCGTGTCACGTGCATGTAC 59.870 57.895 25.18 10.84 44.73 2.90
5872 8655 1.282248 GCGTGTCACGTGCATGTACT 61.282 55.000 25.18 0.00 44.73 2.73
5873 8656 1.136690 CGTGTCACGTGCATGTACTT 58.863 50.000 17.30 0.00 36.74 2.24
5874 8657 1.525197 CGTGTCACGTGCATGTACTTT 59.475 47.619 17.30 0.00 36.74 2.66
5875 8658 2.659023 CGTGTCACGTGCATGTACTTTG 60.659 50.000 17.30 8.89 36.74 2.77
5876 8659 2.286833 GTGTCACGTGCATGTACTTTGT 59.713 45.455 12.10 0.00 0.00 2.83
5877 8660 3.491639 GTGTCACGTGCATGTACTTTGTA 59.508 43.478 12.10 1.50 0.00 2.41
5878 8661 3.491639 TGTCACGTGCATGTACTTTGTAC 59.508 43.478 12.10 0.00 0.00 2.90
5879 8662 3.739300 GTCACGTGCATGTACTTTGTACT 59.261 43.478 12.10 0.00 0.00 2.73
5880 8663 4.210537 GTCACGTGCATGTACTTTGTACTT 59.789 41.667 12.10 4.32 0.00 2.24
5881 8664 5.403166 GTCACGTGCATGTACTTTGTACTTA 59.597 40.000 12.10 0.00 0.00 2.24
5882 8665 6.090358 GTCACGTGCATGTACTTTGTACTTAT 59.910 38.462 12.10 0.00 0.00 1.73
5883 8666 7.274033 GTCACGTGCATGTACTTTGTACTTATA 59.726 37.037 12.10 0.00 0.00 0.98
5884 8667 7.977293 TCACGTGCATGTACTTTGTACTTATAT 59.023 33.333 12.10 0.00 0.00 0.86
5885 8668 9.240159 CACGTGCATGTACTTTGTACTTATATA 57.760 33.333 12.10 0.00 0.00 0.86
5886 8669 9.806203 ACGTGCATGTACTTTGTACTTATATAA 57.194 29.630 10.57 0.00 0.00 0.98
5900 8683 9.996554 TGTACTTATATAATTGTATGTGCTGCT 57.003 29.630 5.06 0.00 0.00 4.24
5913 8696 1.600916 GCTGCTCCACGGAAAACCT 60.601 57.895 0.00 0.00 0.00 3.50
5980 8770 4.214327 CGCCGCCTCTCCTCCTTC 62.214 72.222 0.00 0.00 0.00 3.46
5981 8771 3.855853 GCCGCCTCTCCTCCTTCC 61.856 72.222 0.00 0.00 0.00 3.46
5982 8772 3.532155 CCGCCTCTCCTCCTTCCG 61.532 72.222 0.00 0.00 0.00 4.30
6073 8889 3.625897 CCGTGCTCACCCTCACCA 61.626 66.667 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.066262 GACGGATGTGTGTTACTGTGG 58.934 52.381 0.00 0.00 0.00 4.17
27 28 1.719246 CGACGGATGTGTGTTACTGTG 59.281 52.381 0.00 0.00 0.00 3.66
29 30 0.713883 GCGACGGATGTGTGTTACTG 59.286 55.000 0.00 0.00 0.00 2.74
30 31 0.601558 AGCGACGGATGTGTGTTACT 59.398 50.000 0.00 0.00 0.00 2.24
31 32 0.989890 GAGCGACGGATGTGTGTTAC 59.010 55.000 0.00 0.00 0.00 2.50
32 33 0.885879 AGAGCGACGGATGTGTGTTA 59.114 50.000 0.00 0.00 0.00 2.41
33 34 0.388649 GAGAGCGACGGATGTGTGTT 60.389 55.000 0.00 0.00 0.00 3.32
69 77 1.064389 GCCTCCTTTTGCTACCTCCAT 60.064 52.381 0.00 0.00 0.00 3.41
99 107 6.406624 CCGGTGTGTAGTAGAATAGATGGTTT 60.407 42.308 0.00 0.00 0.00 3.27
102 110 4.825634 TCCGGTGTGTAGTAGAATAGATGG 59.174 45.833 0.00 0.00 0.00 3.51
103 111 6.576662 ATCCGGTGTGTAGTAGAATAGATG 57.423 41.667 0.00 0.00 0.00 2.90
104 112 8.162085 TCTTATCCGGTGTGTAGTAGAATAGAT 58.838 37.037 0.00 0.00 0.00 1.98
105 113 7.512130 TCTTATCCGGTGTGTAGTAGAATAGA 58.488 38.462 0.00 0.00 0.00 1.98
106 114 7.094720 CCTCTTATCCGGTGTGTAGTAGAATAG 60.095 44.444 0.00 0.00 0.00 1.73
107 115 6.713903 CCTCTTATCCGGTGTGTAGTAGAATA 59.286 42.308 0.00 0.00 0.00 1.75
108 116 5.535406 CCTCTTATCCGGTGTGTAGTAGAAT 59.465 44.000 0.00 0.00 0.00 2.40
109 117 4.885907 CCTCTTATCCGGTGTGTAGTAGAA 59.114 45.833 0.00 0.00 0.00 2.10
110 118 4.164796 TCCTCTTATCCGGTGTGTAGTAGA 59.835 45.833 0.00 0.00 0.00 2.59
112 120 4.508551 TCCTCTTATCCGGTGTGTAGTA 57.491 45.455 0.00 0.00 0.00 1.82
125 145 7.618019 TGTATCATACCTTGCTTCCTCTTAT 57.382 36.000 0.00 0.00 0.00 1.73
126 146 7.432148 TTGTATCATACCTTGCTTCCTCTTA 57.568 36.000 0.00 0.00 0.00 2.10
127 147 5.957771 TGTATCATACCTTGCTTCCTCTT 57.042 39.130 0.00 0.00 0.00 2.85
163 183 9.113838 GCATGGATTCAGATTCTACTTTTAGAA 57.886 33.333 0.00 0.00 46.26 2.10
164 184 8.267183 TGCATGGATTCAGATTCTACTTTTAGA 58.733 33.333 0.00 0.00 32.05 2.10
165 185 8.341173 GTGCATGGATTCAGATTCTACTTTTAG 58.659 37.037 0.00 0.00 0.00 1.85
166 186 7.011389 CGTGCATGGATTCAGATTCTACTTTTA 59.989 37.037 0.00 0.00 0.00 1.52
167 187 6.183360 CGTGCATGGATTCAGATTCTACTTTT 60.183 38.462 0.00 0.00 0.00 2.27
168 188 5.295292 CGTGCATGGATTCAGATTCTACTTT 59.705 40.000 0.00 0.00 0.00 2.66
169 189 4.813161 CGTGCATGGATTCAGATTCTACTT 59.187 41.667 0.00 0.00 0.00 2.24
170 190 4.375272 CGTGCATGGATTCAGATTCTACT 58.625 43.478 0.00 0.00 0.00 2.57
171 191 3.059325 GCGTGCATGGATTCAGATTCTAC 60.059 47.826 8.27 0.00 0.00 2.59
174 194 1.002033 GGCGTGCATGGATTCAGATTC 60.002 52.381 8.27 0.00 0.00 2.52
185 205 1.692148 ATCGTAACACGGCGTGCATG 61.692 55.000 37.21 28.44 42.81 4.06
223 243 7.656137 ACTGTGTATTCAGATCGTAACACTTTT 59.344 33.333 15.69 3.77 38.38 2.27
224 244 7.116376 CACTGTGTATTCAGATCGTAACACTTT 59.884 37.037 15.69 5.42 38.38 2.66
225 245 6.586463 CACTGTGTATTCAGATCGTAACACTT 59.414 38.462 15.69 5.65 38.38 3.16
226 246 6.093404 CACTGTGTATTCAGATCGTAACACT 58.907 40.000 15.69 0.00 38.38 3.55
227 247 5.862323 ACACTGTGTATTCAGATCGTAACAC 59.138 40.000 12.53 10.80 38.63 3.32
228 248 5.861787 CACACTGTGTATTCAGATCGTAACA 59.138 40.000 13.89 0.00 38.63 2.41
229 249 5.288712 CCACACTGTGTATTCAGATCGTAAC 59.711 44.000 13.89 0.00 38.63 2.50
230 250 5.184287 TCCACACTGTGTATTCAGATCGTAA 59.816 40.000 13.89 0.00 38.63 3.18
231 251 4.703093 TCCACACTGTGTATTCAGATCGTA 59.297 41.667 13.89 0.00 38.63 3.43
232 252 3.509967 TCCACACTGTGTATTCAGATCGT 59.490 43.478 13.89 0.00 38.63 3.73
233 253 4.110036 TCCACACTGTGTATTCAGATCG 57.890 45.455 13.89 0.00 38.63 3.69
234 254 4.272018 GCATCCACACTGTGTATTCAGATC 59.728 45.833 13.89 0.00 38.63 2.75
235 255 4.194640 GCATCCACACTGTGTATTCAGAT 58.805 43.478 13.89 8.15 38.63 2.90
236 256 3.599343 GCATCCACACTGTGTATTCAGA 58.401 45.455 13.89 6.23 38.63 3.27
237 257 2.349580 CGCATCCACACTGTGTATTCAG 59.650 50.000 13.89 0.50 40.80 3.02
238 258 2.028567 TCGCATCCACACTGTGTATTCA 60.029 45.455 13.89 0.00 0.00 2.57
239 259 2.348666 GTCGCATCCACACTGTGTATTC 59.651 50.000 13.89 0.00 0.00 1.75
240 260 2.346803 GTCGCATCCACACTGTGTATT 58.653 47.619 13.89 0.00 0.00 1.89
241 261 1.405526 GGTCGCATCCACACTGTGTAT 60.406 52.381 13.89 1.45 0.00 2.29
253 273 1.739466 TGATTTGCTTCAGGTCGCATC 59.261 47.619 0.00 0.00 35.85 3.91
266 286 3.334691 TGCTGGTACTACTGTGATTTGC 58.665 45.455 0.00 0.00 0.00 3.68
267 287 6.238211 GCTAATGCTGGTACTACTGTGATTTG 60.238 42.308 0.00 0.00 36.03 2.32
268 288 5.817816 GCTAATGCTGGTACTACTGTGATTT 59.182 40.000 0.00 0.00 36.03 2.17
269 289 5.360591 GCTAATGCTGGTACTACTGTGATT 58.639 41.667 0.00 0.00 36.03 2.57
270 290 4.950050 GCTAATGCTGGTACTACTGTGAT 58.050 43.478 0.00 0.00 36.03 3.06
271 291 4.386867 GCTAATGCTGGTACTACTGTGA 57.613 45.455 0.00 0.00 36.03 3.58
288 314 3.263425 CCAAACCACTTCCCTCTAGCTAA 59.737 47.826 0.00 0.00 0.00 3.09
293 319 1.742308 AGCCAAACCACTTCCCTCTA 58.258 50.000 0.00 0.00 0.00 2.43
312 348 0.249447 CGCCGGAGATGTCAAGCATA 60.249 55.000 5.05 0.00 38.06 3.14
331 367 2.038837 GGCGTGGTTGACTAAGCCC 61.039 63.158 12.17 0.00 43.84 5.19
333 369 1.912371 GCTGGCGTGGTTGACTAAGC 61.912 60.000 0.00 0.00 34.93 3.09
334 370 1.626654 CGCTGGCGTGGTTGACTAAG 61.627 60.000 6.83 0.00 34.35 2.18
351 389 3.741476 CAAACCTCTGGGCTGCGC 61.741 66.667 10.06 10.06 35.63 6.09
354 392 1.975407 CCTGCAAACCTCTGGGCTG 60.975 63.158 0.00 0.00 35.63 4.85
357 395 2.036256 CCCCTGCAAACCTCTGGG 59.964 66.667 0.00 0.00 40.99 4.45
358 396 2.677875 GCCCCTGCAAACCTCTGG 60.678 66.667 0.00 0.00 37.47 3.86
359 397 2.677875 GGCCCCTGCAAACCTCTG 60.678 66.667 0.00 0.00 40.13 3.35
360 398 3.984732 GGGCCCCTGCAAACCTCT 61.985 66.667 12.23 0.00 40.13 3.69
368 406 3.373565 CGTTTCAAGGGCCCCTGC 61.374 66.667 21.43 1.74 32.13 4.85
431 477 4.151798 GTCTGATTACTCTGTTTTTGCGC 58.848 43.478 0.00 0.00 0.00 6.09
469 516 5.522456 TGTTCATTTCATTTCACAGACAGC 58.478 37.500 0.00 0.00 0.00 4.40
475 522 7.490840 AGTTGTGATGTTCATTTCATTTCACA 58.509 30.769 0.00 0.00 32.33 3.58
476 523 7.115378 GGAGTTGTGATGTTCATTTCATTTCAC 59.885 37.037 0.00 0.00 0.00 3.18
502 549 3.041946 AGGCAGTAGGATACAAAGAGGG 58.958 50.000 0.00 0.00 46.26 4.30
503 550 3.070302 GGAGGCAGTAGGATACAAAGAGG 59.930 52.174 0.00 0.00 46.26 3.69
504 551 3.706594 TGGAGGCAGTAGGATACAAAGAG 59.293 47.826 0.00 0.00 46.26 2.85
505 552 3.719871 TGGAGGCAGTAGGATACAAAGA 58.280 45.455 0.00 0.00 46.26 2.52
506 553 4.696479 ATGGAGGCAGTAGGATACAAAG 57.304 45.455 0.00 0.00 46.26 2.77
507 554 4.141482 GGAATGGAGGCAGTAGGATACAAA 60.141 45.833 0.00 0.00 46.26 2.83
508 555 3.391296 GGAATGGAGGCAGTAGGATACAA 59.609 47.826 0.00 0.00 46.26 2.41
509 556 2.972713 GGAATGGAGGCAGTAGGATACA 59.027 50.000 0.00 0.00 46.26 2.29
510 557 3.243724 AGGAATGGAGGCAGTAGGATAC 58.756 50.000 0.00 0.00 43.47 2.24
511 558 3.637821 AGGAATGGAGGCAGTAGGATA 57.362 47.619 0.00 0.00 0.00 2.59
512 559 2.503869 AGGAATGGAGGCAGTAGGAT 57.496 50.000 0.00 0.00 0.00 3.24
513 560 3.414759 TTAGGAATGGAGGCAGTAGGA 57.585 47.619 0.00 0.00 0.00 2.94
514 561 4.713792 ATTTAGGAATGGAGGCAGTAGG 57.286 45.455 0.00 0.00 0.00 3.18
515 562 8.598041 ACTTATATTTAGGAATGGAGGCAGTAG 58.402 37.037 0.00 0.00 0.00 2.57
516 563 8.506196 ACTTATATTTAGGAATGGAGGCAGTA 57.494 34.615 0.00 0.00 0.00 2.74
517 564 7.394144 ACTTATATTTAGGAATGGAGGCAGT 57.606 36.000 0.00 0.00 0.00 4.40
518 565 9.965902 AATACTTATATTTAGGAATGGAGGCAG 57.034 33.333 0.00 0.00 0.00 4.85
519 566 9.959721 GAATACTTATATTTAGGAATGGAGGCA 57.040 33.333 0.00 0.00 30.77 4.75
520 567 9.099454 CGAATACTTATATTTAGGAATGGAGGC 57.901 37.037 0.00 0.00 30.77 4.70
545 592 7.736031 TGAAGTTTATCGTGAAATCTCTACG 57.264 36.000 0.00 0.00 39.04 3.51
581 628 9.851686 TGCATTTTAGGTTATAGATTCACTCAT 57.148 29.630 0.00 0.00 0.00 2.90
582 629 9.851686 ATGCATTTTAGGTTATAGATTCACTCA 57.148 29.630 0.00 0.00 0.00 3.41
595 642 8.559536 CGAATGTACATAGATGCATTTTAGGTT 58.440 33.333 9.21 0.00 32.47 3.50
596 643 7.715249 ACGAATGTACATAGATGCATTTTAGGT 59.285 33.333 9.21 7.61 32.47 3.08
597 644 8.087982 ACGAATGTACATAGATGCATTTTAGG 57.912 34.615 9.21 1.41 32.47 2.69
613 660 3.754188 AGAGACCACGTACGAATGTAC 57.246 47.619 24.41 12.12 46.09 2.90
614 661 4.330894 CACTAGAGACCACGTACGAATGTA 59.669 45.833 24.41 4.71 0.00 2.29
615 662 3.126514 CACTAGAGACCACGTACGAATGT 59.873 47.826 24.41 15.05 0.00 2.71
616 663 3.373130 TCACTAGAGACCACGTACGAATG 59.627 47.826 24.41 10.77 0.00 2.67
617 664 3.603532 TCACTAGAGACCACGTACGAAT 58.396 45.455 24.41 6.31 0.00 3.34
618 665 3.044235 TCACTAGAGACCACGTACGAA 57.956 47.619 24.41 0.00 0.00 3.85
619 666 2.749280 TCACTAGAGACCACGTACGA 57.251 50.000 24.41 0.00 0.00 3.43
620 667 3.818961 TTTCACTAGAGACCACGTACG 57.181 47.619 15.01 15.01 0.00 3.67
621 668 5.354792 AGAGATTTCACTAGAGACCACGTAC 59.645 44.000 0.00 0.00 0.00 3.67
622 669 5.498393 AGAGATTTCACTAGAGACCACGTA 58.502 41.667 0.00 0.00 0.00 3.57
623 670 4.337145 AGAGATTTCACTAGAGACCACGT 58.663 43.478 0.00 0.00 0.00 4.49
624 671 4.974368 AGAGATTTCACTAGAGACCACG 57.026 45.455 0.00 0.00 0.00 4.94
625 672 6.761099 TGTAGAGATTTCACTAGAGACCAC 57.239 41.667 0.00 0.00 0.00 4.16
626 673 7.670140 TCTTTGTAGAGATTTCACTAGAGACCA 59.330 37.037 0.00 0.00 0.00 4.02
627 674 7.971722 GTCTTTGTAGAGATTTCACTAGAGACC 59.028 40.741 0.00 0.00 29.35 3.85
628 675 8.736244 AGTCTTTGTAGAGATTTCACTAGAGAC 58.264 37.037 0.00 11.16 32.08 3.36
629 676 8.871629 AGTCTTTGTAGAGATTTCACTAGAGA 57.128 34.615 0.00 0.00 0.00 3.10
641 688 8.770828 CCGTTTTTGAATAAGTCTTTGTAGAGA 58.229 33.333 0.00 0.00 0.00 3.10
642 689 8.015658 CCCGTTTTTGAATAAGTCTTTGTAGAG 58.984 37.037 0.00 0.00 0.00 2.43
643 690 7.040961 CCCCGTTTTTGAATAAGTCTTTGTAGA 60.041 37.037 0.00 0.00 0.00 2.59
644 691 7.081976 CCCCGTTTTTGAATAAGTCTTTGTAG 58.918 38.462 0.00 0.00 0.00 2.74
645 692 6.546772 ACCCCGTTTTTGAATAAGTCTTTGTA 59.453 34.615 0.00 0.00 0.00 2.41
646 693 5.361571 ACCCCGTTTTTGAATAAGTCTTTGT 59.638 36.000 0.00 0.00 0.00 2.83
647 694 5.838529 ACCCCGTTTTTGAATAAGTCTTTG 58.161 37.500 0.00 0.00 0.00 2.77
648 695 7.770366 ATACCCCGTTTTTGAATAAGTCTTT 57.230 32.000 0.00 0.00 0.00 2.52
649 696 7.770366 AATACCCCGTTTTTGAATAAGTCTT 57.230 32.000 0.00 0.00 0.00 3.01
650 697 7.668469 AGAAATACCCCGTTTTTGAATAAGTCT 59.332 33.333 0.00 0.00 0.00 3.24
651 698 7.823665 AGAAATACCCCGTTTTTGAATAAGTC 58.176 34.615 0.00 0.00 0.00 3.01
652 699 7.449086 TGAGAAATACCCCGTTTTTGAATAAGT 59.551 33.333 0.00 0.00 0.00 2.24
653 700 7.822658 TGAGAAATACCCCGTTTTTGAATAAG 58.177 34.615 0.00 0.00 0.00 1.73
654 701 7.762588 TGAGAAATACCCCGTTTTTGAATAA 57.237 32.000 0.00 0.00 0.00 1.40
655 702 7.629652 GCATGAGAAATACCCCGTTTTTGAATA 60.630 37.037 0.00 0.00 0.00 1.75
656 703 6.630071 CATGAGAAATACCCCGTTTTTGAAT 58.370 36.000 0.00 0.00 0.00 2.57
657 704 5.565834 GCATGAGAAATACCCCGTTTTTGAA 60.566 40.000 0.00 0.00 0.00 2.69
658 705 4.082463 GCATGAGAAATACCCCGTTTTTGA 60.082 41.667 0.00 0.00 0.00 2.69
659 706 4.173256 GCATGAGAAATACCCCGTTTTTG 58.827 43.478 0.00 0.00 0.00 2.44
660 707 3.194755 GGCATGAGAAATACCCCGTTTTT 59.805 43.478 0.00 0.00 0.00 1.94
661 708 2.758423 GGCATGAGAAATACCCCGTTTT 59.242 45.455 0.00 0.00 0.00 2.43
662 709 2.291282 TGGCATGAGAAATACCCCGTTT 60.291 45.455 0.00 0.00 0.00 3.60
663 710 1.283613 TGGCATGAGAAATACCCCGTT 59.716 47.619 0.00 0.00 0.00 4.44
664 711 0.916086 TGGCATGAGAAATACCCCGT 59.084 50.000 0.00 0.00 0.00 5.28
665 712 2.154462 GATGGCATGAGAAATACCCCG 58.846 52.381 3.81 0.00 0.00 5.73
666 713 3.515602 AGATGGCATGAGAAATACCCC 57.484 47.619 3.81 0.00 0.00 4.95
667 714 4.042187 ACCTAGATGGCATGAGAAATACCC 59.958 45.833 3.81 0.00 40.22 3.69
668 715 5.234466 ACCTAGATGGCATGAGAAATACC 57.766 43.478 3.81 0.00 40.22 2.73
669 716 5.471456 CCAACCTAGATGGCATGAGAAATAC 59.529 44.000 3.81 0.00 40.22 1.89
670 717 5.132648 ACCAACCTAGATGGCATGAGAAATA 59.867 40.000 3.81 0.00 41.89 1.40
671 718 4.079558 ACCAACCTAGATGGCATGAGAAAT 60.080 41.667 3.81 0.00 41.89 2.17
672 719 3.266772 ACCAACCTAGATGGCATGAGAAA 59.733 43.478 3.81 0.00 41.89 2.52
673 720 2.846206 ACCAACCTAGATGGCATGAGAA 59.154 45.455 3.81 0.00 41.89 2.87
674 721 2.481441 ACCAACCTAGATGGCATGAGA 58.519 47.619 3.81 0.00 41.89 3.27
675 722 2.947652 CAACCAACCTAGATGGCATGAG 59.052 50.000 3.81 1.40 41.89 2.90
676 723 2.575735 TCAACCAACCTAGATGGCATGA 59.424 45.455 3.81 13.70 41.89 3.07
677 724 2.947652 CTCAACCAACCTAGATGGCATG 59.052 50.000 3.81 12.09 41.89 4.06
678 725 2.684927 GCTCAACCAACCTAGATGGCAT 60.685 50.000 0.00 0.00 41.89 4.40
679 726 1.340017 GCTCAACCAACCTAGATGGCA 60.340 52.381 12.85 0.00 41.89 4.92
680 727 1.065126 AGCTCAACCAACCTAGATGGC 60.065 52.381 12.85 1.50 41.89 4.40
681 728 2.026822 ACAGCTCAACCAACCTAGATGG 60.027 50.000 11.69 11.69 43.84 3.51
682 729 3.005554 CACAGCTCAACCAACCTAGATG 58.994 50.000 0.00 0.00 0.00 2.90
683 730 2.026822 CCACAGCTCAACCAACCTAGAT 60.027 50.000 0.00 0.00 0.00 1.98
684 731 1.347707 CCACAGCTCAACCAACCTAGA 59.652 52.381 0.00 0.00 0.00 2.43
685 732 1.813513 CCACAGCTCAACCAACCTAG 58.186 55.000 0.00 0.00 0.00 3.02
686 733 0.250727 GCCACAGCTCAACCAACCTA 60.251 55.000 0.00 0.00 35.50 3.08
687 734 1.529244 GCCACAGCTCAACCAACCT 60.529 57.895 0.00 0.00 35.50 3.50
688 735 1.391157 TTGCCACAGCTCAACCAACC 61.391 55.000 0.00 0.00 40.80 3.77
689 736 0.459489 TTTGCCACAGCTCAACCAAC 59.541 50.000 0.00 0.00 40.80 3.77
690 737 1.068895 CATTTGCCACAGCTCAACCAA 59.931 47.619 0.00 0.00 40.80 3.67
691 738 0.675083 CATTTGCCACAGCTCAACCA 59.325 50.000 0.00 0.00 40.80 3.67
692 739 0.961019 TCATTTGCCACAGCTCAACC 59.039 50.000 0.00 0.00 40.80 3.77
693 740 3.308438 AATCATTTGCCACAGCTCAAC 57.692 42.857 0.00 0.00 40.80 3.18
694 741 3.321396 TCAAATCATTTGCCACAGCTCAA 59.679 39.130 5.12 0.00 40.43 3.02
695 742 2.892215 TCAAATCATTTGCCACAGCTCA 59.108 40.909 5.12 0.00 40.43 4.26
696 743 3.581024 TCAAATCATTTGCCACAGCTC 57.419 42.857 5.12 0.00 40.43 4.09
697 744 4.142093 GGTATCAAATCATTTGCCACAGCT 60.142 41.667 5.12 0.00 40.43 4.24
698 745 4.114794 GGTATCAAATCATTTGCCACAGC 58.885 43.478 5.12 0.00 40.43 4.40
699 746 5.327616 TGGTATCAAATCATTTGCCACAG 57.672 39.130 5.12 0.00 40.43 3.66
700 747 5.337410 CCTTGGTATCAAATCATTTGCCACA 60.337 40.000 5.12 0.00 40.43 4.17
701 748 5.111293 CCTTGGTATCAAATCATTTGCCAC 58.889 41.667 5.12 5.47 40.43 5.01
702 749 4.776837 ACCTTGGTATCAAATCATTTGCCA 59.223 37.500 5.12 4.67 40.43 4.92
703 750 5.343307 ACCTTGGTATCAAATCATTTGCC 57.657 39.130 5.12 2.02 40.43 4.52
715 762 3.625764 TCATTTGCGCTAACCTTGGTATC 59.374 43.478 9.73 0.00 0.00 2.24
716 763 3.616219 TCATTTGCGCTAACCTTGGTAT 58.384 40.909 9.73 0.00 0.00 2.73
719 766 2.030363 TGTTCATTTGCGCTAACCTTGG 60.030 45.455 9.73 0.00 0.00 3.61
730 2435 4.989797 TCACCATGTTTGATGTTCATTTGC 59.010 37.500 0.00 0.00 0.00 3.68
768 2473 3.762288 GTGTAGTGGATCAGTAGTGGTGA 59.238 47.826 0.00 0.00 0.00 4.02
795 2763 7.336931 TCTTCTGAATTCTAAAATGTACTGCCC 59.663 37.037 7.05 0.00 0.00 5.36
796 2764 8.268850 TCTTCTGAATTCTAAAATGTACTGCC 57.731 34.615 7.05 0.00 0.00 4.85
805 2773 5.106555 CGGCTGCTTCTTCTGAATTCTAAAA 60.107 40.000 7.05 0.00 0.00 1.52
977 2956 4.127040 CTGCCGCGACTCTGCTCT 62.127 66.667 8.23 0.00 0.00 4.09
1432 3431 3.209812 CTCGTCCTCGCGGATGGA 61.210 66.667 13.55 9.38 44.88 3.41
1541 3545 2.103432 GGGCGAAAAAGGGGAAAGAAAA 59.897 45.455 0.00 0.00 0.00 2.29
1542 3546 1.689813 GGGCGAAAAAGGGGAAAGAAA 59.310 47.619 0.00 0.00 0.00 2.52
1543 3547 1.334160 GGGCGAAAAAGGGGAAAGAA 58.666 50.000 0.00 0.00 0.00 2.52
1559 3572 4.114997 CCGAAATGTGCGGTGGGC 62.115 66.667 0.00 0.00 43.66 5.36
1576 3589 2.368105 CGCGCACACTGTCTGTCTC 61.368 63.158 8.75 0.00 0.00 3.36
1614 3627 3.253838 AGCAACCACCCCCGCTTA 61.254 61.111 0.00 0.00 0.00 3.09
1674 3765 1.495584 CCAAACACGAGGACACCACG 61.496 60.000 6.13 6.13 42.89 4.94
1748 3854 1.079888 GGCCTGGCATTTTGGAACG 60.080 57.895 22.05 0.00 0.00 3.95
1754 3860 1.678970 GACGGAGGCCTGGCATTTT 60.679 57.895 22.05 1.10 0.00 1.82
1755 3861 2.044946 GACGGAGGCCTGGCATTT 60.045 61.111 22.05 5.04 0.00 2.32
1756 3862 4.473520 CGACGGAGGCCTGGCATT 62.474 66.667 22.05 7.93 0.00 3.56
1770 3876 3.432782 AGATCAATACGAAACGACCGAC 58.567 45.455 0.00 0.00 0.00 4.79
1771 3877 3.770263 AGATCAATACGAAACGACCGA 57.230 42.857 0.00 0.00 0.00 4.69
1772 3878 3.855379 TCAAGATCAATACGAAACGACCG 59.145 43.478 0.00 0.00 0.00 4.79
1777 3883 8.567221 CGAAAACAATCAAGATCAATACGAAAC 58.433 33.333 0.00 0.00 0.00 2.78
1785 3891 4.545610 GCACCGAAAACAATCAAGATCAA 58.454 39.130 0.00 0.00 0.00 2.57
1787 3893 3.057596 TGGCACCGAAAACAATCAAGATC 60.058 43.478 0.00 0.00 0.00 2.75
1803 3909 2.181954 TCCATTGCAAATTTGGCACC 57.818 45.000 19.47 3.64 41.75 5.01
1805 3911 2.619147 CGATCCATTGCAAATTTGGCA 58.381 42.857 19.47 14.30 40.00 4.92
1837 3943 0.609131 CCACCAAATCGGCCAAGACT 60.609 55.000 2.24 0.00 39.03 3.24
1838 3944 0.893727 ACCACCAAATCGGCCAAGAC 60.894 55.000 2.24 0.00 39.03 3.01
1840 3946 0.808755 GTACCACCAAATCGGCCAAG 59.191 55.000 2.24 0.00 39.03 3.61
1841 3947 0.110678 TGTACCACCAAATCGGCCAA 59.889 50.000 2.24 0.00 39.03 4.52
1842 3948 0.322098 CTGTACCACCAAATCGGCCA 60.322 55.000 2.24 0.00 39.03 5.36
1843 3949 0.322187 ACTGTACCACCAAATCGGCC 60.322 55.000 0.00 0.00 39.03 6.13
1867 3983 2.098770 GGCATTTCAACAGATCAGCTCC 59.901 50.000 0.00 0.00 0.00 4.70
1897 4027 1.902918 TGCTTGTCATGTGGCCACC 60.903 57.895 32.62 17.66 0.00 4.61
2005 4139 0.548031 TCAAGGCCCCTCATCACATC 59.452 55.000 0.00 0.00 0.00 3.06
2011 4145 0.779997 ACAAACTCAAGGCCCCTCAT 59.220 50.000 0.00 0.00 0.00 2.90
2017 4151 6.530181 CGGAATAATAAAACAAACTCAAGGCC 59.470 38.462 0.00 0.00 0.00 5.19
2029 4163 6.483640 AGATCCAGTCTGCGGAATAATAAAAC 59.516 38.462 0.00 0.00 35.77 2.43
2094 4231 1.550524 ACTAAGCCTCATGTGAAGCGA 59.449 47.619 0.00 0.00 36.65 4.93
2141 4278 3.498397 AGCTTAAATGGCATACCGAATCG 59.502 43.478 0.00 0.00 39.70 3.34
2147 4284 6.396829 AATCTGAAGCTTAAATGGCATACC 57.603 37.500 0.00 0.00 0.00 2.73
2148 4285 8.840321 TCTTAATCTGAAGCTTAAATGGCATAC 58.160 33.333 0.00 0.00 0.00 2.39
2149 4286 8.840321 GTCTTAATCTGAAGCTTAAATGGCATA 58.160 33.333 0.00 0.00 0.00 3.14
2168 4305 6.558909 GCAGAAAGCAGCTAATTGTCTTAAT 58.441 36.000 0.00 0.00 44.79 1.40
2169 4306 5.942872 GCAGAAAGCAGCTAATTGTCTTAA 58.057 37.500 0.00 0.00 44.79 1.85
2201 4338 5.163693 TGTGAGCGTCGAATTATCTGAACTA 60.164 40.000 0.00 0.00 0.00 2.24
2218 4355 2.341257 GTCATGGCCTATATGTGAGCG 58.659 52.381 3.32 0.00 0.00 5.03
2221 4358 1.970640 AGCGTCATGGCCTATATGTGA 59.029 47.619 3.32 0.00 0.00 3.58
2226 4363 1.810755 CGAGTAGCGTCATGGCCTATA 59.189 52.381 3.32 0.00 34.64 1.31
2231 4368 1.132588 GAATCGAGTAGCGTCATGGC 58.867 55.000 0.00 0.00 41.80 4.40
2258 4395 9.150653 GTACACAATAAGACAAACTGTTTTACG 57.849 33.333 2.41 0.00 31.13 3.18
2262 4399 8.557029 GCTAGTACACAATAAGACAAACTGTTT 58.443 33.333 0.00 0.00 0.00 2.83
2340 4477 5.869344 GTGCTTATCATAACACTGACTGACA 59.131 40.000 3.99 0.00 0.00 3.58
2343 4480 6.099579 GTGTGCTTATCATAACACTGACTG 57.900 41.667 9.90 0.00 39.80 3.51
2412 4559 7.754154 GTATTGTGACACAAGACAATGCTTGC 61.754 42.308 31.28 11.69 46.31 4.01
2428 4575 2.235016 TGGCCAAACAGGTATTGTGAC 58.765 47.619 0.61 0.00 40.74 3.67
2429 4576 2.666272 TGGCCAAACAGGTATTGTGA 57.334 45.000 0.61 0.00 40.74 3.58
2432 4579 2.368655 GCTTGGCCAAACAGGTATTG 57.631 50.000 20.91 5.38 40.61 1.90
2471 4618 4.924305 ATATGATTTGTGTGGCCATGAC 57.076 40.909 9.72 10.08 0.00 3.06
2522 4675 9.056005 GCTACATTCATAACATTGGTGAGATTA 57.944 33.333 0.00 0.00 0.00 1.75
2526 4679 6.017605 GGAGCTACATTCATAACATTGGTGAG 60.018 42.308 0.00 0.00 0.00 3.51
2532 4685 8.613060 CAGTATGGAGCTACATTCATAACATT 57.387 34.615 18.69 0.00 32.39 2.71
2551 4704 7.101652 ACTACATCAGTTCTGTACCAGTATG 57.898 40.000 0.00 0.00 31.59 2.39
2578 4731 5.806654 AATTTATCCCAAACTGTGCAACT 57.193 34.783 0.00 0.00 38.04 3.16
2580 4733 9.814899 CATATAAATTTATCCCAAACTGTGCAA 57.185 29.630 13.95 0.00 0.00 4.08
2587 4740 9.541143 CCCACAACATATAAATTTATCCCAAAC 57.459 33.333 13.95 0.00 0.00 2.93
2612 4765 3.010420 CAAGGTAAGCTGCTCCTAAACC 58.990 50.000 10.03 9.42 0.00 3.27
2647 4800 6.019656 TGGGCAGATAAAACATGGGTATTA 57.980 37.500 0.00 0.00 0.00 0.98
2680 4833 2.143122 TCAGTTTGTCGGACATCAAGC 58.857 47.619 12.26 0.00 0.00 4.01
2695 4848 2.694628 TGCCATGAACAAAAGCTCAGTT 59.305 40.909 0.00 0.00 0.00 3.16
2698 4851 3.555377 CCATTGCCATGAACAAAAGCTCA 60.555 43.478 0.00 0.00 31.07 4.26
2707 4860 4.718961 AGTATAGGTCCATTGCCATGAAC 58.281 43.478 0.00 0.00 31.07 3.18
2710 4863 5.489792 ACTAGTATAGGTCCATTGCCATG 57.510 43.478 0.00 0.00 44.97 3.66
2713 4866 6.896307 AGGTATACTAGTATAGGTCCATTGCC 59.104 42.308 20.62 14.80 44.97 4.52
2743 4896 9.676861 TGAAACTATCATCAATCTGATCTGTTT 57.323 29.630 13.16 13.16 40.74 2.83
2747 4900 7.932491 CACCTGAAACTATCATCAATCTGATCT 59.068 37.037 0.00 0.00 34.28 2.75
2765 4918 2.682856 GCAGTCAAAGTCACACCTGAAA 59.317 45.455 0.00 0.00 0.00 2.69
2777 4930 7.559590 AAGCCTATACTAATTGCAGTCAAAG 57.440 36.000 0.00 0.00 35.56 2.77
2790 4943 6.617538 TGCCTAAGGACTAAAGCCTATACTA 58.382 40.000 0.00 0.00 33.76 1.82
2824 4977 9.590451 AATCAAATACCAATAACTCAAATGCTG 57.410 29.630 0.00 0.00 0.00 4.41
2833 4986 8.041323 ACGTCTCTCAATCAAATACCAATAACT 58.959 33.333 0.00 0.00 0.00 2.24
2856 5009 1.188863 ATAACGGCCTGGACTAACGT 58.811 50.000 0.00 0.00 39.74 3.99
2857 5010 2.304751 AATAACGGCCTGGACTAACG 57.695 50.000 0.00 0.00 0.00 3.18
2866 5019 5.944007 AGTTAACTCAATGAAATAACGGCCT 59.056 36.000 1.12 0.00 32.99 5.19
2868 5021 6.027749 CCAGTTAACTCAATGAAATAACGGC 58.972 40.000 4.77 0.00 32.99 5.68
2922 5076 7.201767 GCTAGAGCCTTGATAAACATTTCACAT 60.202 37.037 0.00 0.00 34.31 3.21
2923 5077 6.094048 GCTAGAGCCTTGATAAACATTTCACA 59.906 38.462 0.00 0.00 34.31 3.58
2924 5078 6.094048 TGCTAGAGCCTTGATAAACATTTCAC 59.906 38.462 0.00 0.00 41.18 3.18
2925 5079 6.094048 GTGCTAGAGCCTTGATAAACATTTCA 59.906 38.462 0.00 0.00 41.18 2.69
2926 5080 6.094048 TGTGCTAGAGCCTTGATAAACATTTC 59.906 38.462 0.00 0.00 41.18 2.17
2929 5085 4.878397 GTGTGCTAGAGCCTTGATAAACAT 59.122 41.667 0.00 0.00 41.18 2.71
2930 5086 4.020218 AGTGTGCTAGAGCCTTGATAAACA 60.020 41.667 0.00 0.00 41.18 2.83
2939 5095 2.355513 CCATTTCAGTGTGCTAGAGCCT 60.356 50.000 0.00 0.00 41.18 4.58
2942 5098 2.703416 TGCCATTTCAGTGTGCTAGAG 58.297 47.619 0.00 0.00 0.00 2.43
2943 5099 2.857186 TGCCATTTCAGTGTGCTAGA 57.143 45.000 0.00 0.00 0.00 2.43
2951 5107 4.101430 ACAAACATTCCTTGCCATTTCAGT 59.899 37.500 0.00 0.00 0.00 3.41
2952 5108 4.634199 ACAAACATTCCTTGCCATTTCAG 58.366 39.130 0.00 0.00 0.00 3.02
2953 5109 4.686191 ACAAACATTCCTTGCCATTTCA 57.314 36.364 0.00 0.00 0.00 2.69
2956 5112 4.101430 ACTGAACAAACATTCCTTGCCATT 59.899 37.500 0.00 0.00 0.00 3.16
2969 5125 5.243426 TCCACTTTGCTTACTGAACAAAC 57.757 39.130 0.00 0.00 0.00 2.93
2981 5137 0.827507 AACCCGCATTCCACTTTGCT 60.828 50.000 0.00 0.00 36.71 3.91
3016 5173 3.832527 AGTAAGGATGTGTTGCCACTTT 58.167 40.909 0.00 0.00 42.34 2.66
3069 5226 0.809636 TTCGTGTGTGTGCCACTGAG 60.810 55.000 0.00 0.00 44.81 3.35
3092 5249 7.431084 CGCAGTACAATAAGTGAAAACAAGTTT 59.569 33.333 0.00 0.00 0.00 2.66
3099 5256 5.621197 ATGCGCAGTACAATAAGTGAAAA 57.379 34.783 18.32 0.00 0.00 2.29
3117 5274 4.500205 ACCATGAATTTGGAGCATAATGCG 60.500 41.667 3.10 0.00 43.45 4.73
3134 5291 5.744007 GCATATTCCTGATGAGACACCATGA 60.744 44.000 0.00 0.00 0.00 3.07
3170 5327 1.760613 AGGGAAGCATGAAATGGCATG 59.239 47.619 0.00 0.00 46.86 4.06
3172 5329 1.477553 GAGGGAAGCATGAAATGGCA 58.522 50.000 0.00 0.00 46.86 4.92
3174 5331 2.449137 AGGAGGGAAGCATGAAATGG 57.551 50.000 0.00 0.00 46.86 3.16
3180 5337 0.324091 AGGCAAAGGAGGGAAGCATG 60.324 55.000 0.00 0.00 0.00 4.06
3192 5349 6.773976 TGAAATAATAGGGTTGAGGCAAAG 57.226 37.500 0.00 0.00 0.00 2.77
3193 5350 7.619302 AGATTGAAATAATAGGGTTGAGGCAAA 59.381 33.333 0.00 0.00 0.00 3.68
3194 5351 7.125391 AGATTGAAATAATAGGGTTGAGGCAA 58.875 34.615 0.00 0.00 0.00 4.52
3263 5420 9.754382 AATTAAATGTGATGCCAGATGTATTTC 57.246 29.630 0.00 0.00 0.00 2.17
3309 5466 9.267084 TCGCATGAATTTGCTACATTAATACTA 57.733 29.630 0.00 0.00 40.54 1.82
3323 5480 8.124823 ACAAGACTATACATTCGCATGAATTTG 58.875 33.333 0.94 0.14 42.14 2.32
3324 5481 8.213518 ACAAGACTATACATTCGCATGAATTT 57.786 30.769 0.94 0.00 42.14 1.82
3325 5482 7.792374 ACAAGACTATACATTCGCATGAATT 57.208 32.000 0.94 0.00 42.14 2.17
3326 5483 7.116948 GCTACAAGACTATACATTCGCATGAAT 59.883 37.037 0.94 0.00 45.70 2.57
3328 5485 5.920840 GCTACAAGACTATACATTCGCATGA 59.079 40.000 0.94 0.00 34.11 3.07
3330 5487 4.917998 CGCTACAAGACTATACATTCGCAT 59.082 41.667 0.00 0.00 0.00 4.73
3332 5489 3.669122 CCGCTACAAGACTATACATTCGC 59.331 47.826 0.00 0.00 0.00 4.70
3334 5491 5.857517 GCTACCGCTACAAGACTATACATTC 59.142 44.000 0.00 0.00 0.00 2.67
3335 5492 5.278858 GGCTACCGCTACAAGACTATACATT 60.279 44.000 0.00 0.00 36.09 2.71
3337 5494 3.567164 GGCTACCGCTACAAGACTATACA 59.433 47.826 0.00 0.00 36.09 2.29
3338 5495 3.819902 AGGCTACCGCTACAAGACTATAC 59.180 47.826 0.00 0.00 36.09 1.47
3342 5499 1.477295 GAAGGCTACCGCTACAAGACT 59.523 52.381 0.00 0.00 36.09 3.24
3343 5500 1.477295 AGAAGGCTACCGCTACAAGAC 59.523 52.381 0.00 0.00 36.09 3.01
3344 5501 1.749634 GAGAAGGCTACCGCTACAAGA 59.250 52.381 0.00 0.00 36.09 3.02
3345 5502 1.751924 AGAGAAGGCTACCGCTACAAG 59.248 52.381 0.00 0.00 36.09 3.16
3346 5503 1.749634 GAGAGAAGGCTACCGCTACAA 59.250 52.381 0.00 0.00 36.09 2.41
3348 5505 1.682740 AGAGAGAAGGCTACCGCTAC 58.317 55.000 0.00 0.00 36.09 3.58
3350 5507 2.668144 ATAGAGAGAAGGCTACCGCT 57.332 50.000 0.00 0.00 36.09 5.52
3351 5508 3.568853 TGTTATAGAGAGAAGGCTACCGC 59.431 47.826 0.00 0.00 0.00 5.68
3352 5509 5.241949 ACATGTTATAGAGAGAAGGCTACCG 59.758 44.000 0.00 0.00 0.00 4.02
3354 5511 7.717568 TCAACATGTTATAGAGAGAAGGCTAC 58.282 38.462 11.53 0.00 0.00 3.58
3386 5633 9.384849 TGGATATATGCTAGCATATGTTCCTAT 57.615 33.333 40.38 32.46 45.82 2.57
3393 5640 9.478768 CTTCTTCTGGATATATGCTAGCATATG 57.521 37.037 41.39 30.24 45.82 1.78
3397 5644 7.452813 TCTTCTTCTTCTGGATATATGCTAGCA 59.547 37.037 21.85 21.85 0.00 3.49
3410 5657 7.736447 ACTTGTATGTTTCTTCTTCTTCTGG 57.264 36.000 0.00 0.00 0.00 3.86
3438 5685 8.650490 ACAAAGAATGTCCCATGAAAATAAAGT 58.350 29.630 0.00 0.00 37.96 2.66
3480 5727 2.192979 CCACACACCAGGCACAGT 59.807 61.111 0.00 0.00 0.00 3.55
3481 5728 2.595463 CCCACACACCAGGCACAG 60.595 66.667 0.00 0.00 0.00 3.66
3532 5779 1.083489 CCTAAACATCGGCGCAAAGA 58.917 50.000 10.83 5.73 0.00 2.52
3557 5804 4.036971 CCTAATGTTTTCCACAACAACCGA 59.963 41.667 0.00 0.00 40.07 4.69
3619 5903 5.843673 TGAATTAACAGTGACAGCCAAAA 57.156 34.783 0.00 0.00 0.00 2.44
3624 5908 4.437930 GGCTGATGAATTAACAGTGACAGC 60.438 45.833 0.00 0.00 44.57 4.40
3626 5910 4.650734 TGGCTGATGAATTAACAGTGACA 58.349 39.130 0.00 0.00 34.60 3.58
3627 5911 4.437930 GCTGGCTGATGAATTAACAGTGAC 60.438 45.833 0.00 0.00 34.60 3.67
3629 5913 3.181493 GGCTGGCTGATGAATTAACAGTG 60.181 47.826 0.00 0.00 34.60 3.66
3630 5914 3.019564 GGCTGGCTGATGAATTAACAGT 58.980 45.455 0.00 0.00 34.60 3.55
3648 5932 3.007182 CCATGTTTCCATTTTGTGAGGCT 59.993 43.478 0.00 0.00 0.00 4.58
3660 5944 3.831333 ACATTGTGTATGCCATGTTTCCA 59.169 39.130 0.00 0.00 37.81 3.53
3666 5950 5.565592 ACTGTTACATTGTGTATGCCATG 57.434 39.130 0.00 0.00 37.81 3.66
3712 6010 7.494211 AGGACAAGTTGGTTTATGGTTTAAAC 58.506 34.615 9.98 9.98 36.86 2.01
3725 6023 1.202770 CGGGAAAGAGGACAAGTTGGT 60.203 52.381 7.96 0.00 0.00 3.67
3726 6024 1.071699 TCGGGAAAGAGGACAAGTTGG 59.928 52.381 7.96 0.00 0.00 3.77
3728 6026 1.766496 TGTCGGGAAAGAGGACAAGTT 59.234 47.619 0.00 0.00 37.72 2.66
3730 6028 1.344763 ACTGTCGGGAAAGAGGACAAG 59.655 52.381 0.00 0.00 39.91 3.16
3734 6032 5.021458 AGTTAATACTGTCGGGAAAGAGGA 58.979 41.667 0.00 0.00 31.99 3.71
3735 6033 5.340439 AGTTAATACTGTCGGGAAAGAGG 57.660 43.478 0.00 0.00 31.99 3.69
4239 6807 6.865205 GGGATCTCATTTGAAACAAACAGAAG 59.135 38.462 0.00 0.00 0.00 2.85
4322 6920 4.870123 AAAAGCTATGTGGCATTTGTGA 57.130 36.364 0.00 0.00 32.95 3.58
4419 7093 2.290323 ACCAACCTTGAGATAGTGGCAC 60.290 50.000 10.29 10.29 0.00 5.01
4605 7357 5.781210 TGAACAAGTTTATTGGCATGTGA 57.219 34.783 0.00 0.00 0.00 3.58
4648 7406 7.726033 ATTGTGTACTTCTATCAGGACTTCT 57.274 36.000 0.00 0.00 0.00 2.85
4722 7480 6.255237 GGTATTTGGTAAGAGCTAAGAACGTC 59.745 42.308 0.00 0.00 0.00 4.34
4763 7521 1.524621 GGCGGTGATCATGTCCTGG 60.525 63.158 0.00 0.00 0.00 4.45
4892 7650 2.483745 GTCTCGGACATGACGCGA 59.516 61.111 15.93 4.20 32.09 5.87
5417 8175 2.203480 GGGGCAACACTCCAAGCA 60.203 61.111 0.00 0.00 36.63 3.91
5420 8181 3.842925 GAGCGGGGCAACACTCCAA 62.843 63.158 0.00 0.00 38.54 3.53
5512 8290 2.044860 CCGTCGTCGCTTTATGAGATC 58.955 52.381 0.00 0.00 35.54 2.75
5562 8340 9.206870 ACAAAACTATATCGAACGAAAACCTAA 57.793 29.630 0.12 0.00 0.00 2.69
5563 8341 8.761575 ACAAAACTATATCGAACGAAAACCTA 57.238 30.769 0.12 0.00 0.00 3.08
5564 8342 7.662604 ACAAAACTATATCGAACGAAAACCT 57.337 32.000 0.12 0.00 0.00 3.50
5569 8347 9.588774 CAGAAAAACAAAACTATATCGAACGAA 57.411 29.630 0.12 0.00 0.00 3.85
5571 8349 8.928844 ACAGAAAAACAAAACTATATCGAACG 57.071 30.769 0.00 0.00 0.00 3.95
5657 8436 2.151202 GCCGAATTTCAGTCCAGAACA 58.849 47.619 0.00 0.00 0.00 3.18
5658 8437 2.095718 GTGCCGAATTTCAGTCCAGAAC 60.096 50.000 0.00 0.00 0.00 3.01
5684 8463 0.671163 TACCAAGGCCTTAACGTGCG 60.671 55.000 20.00 3.43 0.00 5.34
5689 8468 3.687125 AGCTTCTTACCAAGGCCTTAAC 58.313 45.455 20.00 3.18 0.00 2.01
5692 8471 2.893489 CAAAGCTTCTTACCAAGGCCTT 59.107 45.455 13.78 13.78 0.00 4.35
5698 8478 4.340950 CAGGTTTCCAAAGCTTCTTACCAA 59.659 41.667 0.00 0.00 43.61 3.67
5701 8481 4.216472 CCTCAGGTTTCCAAAGCTTCTTAC 59.784 45.833 0.00 0.00 43.61 2.34
5726 8506 2.224499 GGGCCCATGAACAACAAAACAT 60.224 45.455 19.95 0.00 0.00 2.71
5758 8541 4.035684 GCCGTGAGAGAAGAAAACAAAAC 58.964 43.478 0.00 0.00 0.00 2.43
5762 8545 2.613026 TGCCGTGAGAGAAGAAAACA 57.387 45.000 0.00 0.00 0.00 2.83
5839 8622 5.097529 CGTGACACGCTAGACCTATTTTAA 58.902 41.667 16.06 0.00 33.65 1.52
5841 8624 3.508762 CGTGACACGCTAGACCTATTTT 58.491 45.455 16.06 0.00 33.65 1.82
5842 8625 3.146618 CGTGACACGCTAGACCTATTT 57.853 47.619 16.06 0.00 33.65 1.40
5843 8626 2.846039 CGTGACACGCTAGACCTATT 57.154 50.000 16.06 0.00 33.65 1.73
5855 8638 2.286833 ACAAAGTACATGCACGTGACAC 59.713 45.455 22.23 8.43 0.00 3.67
5856 8639 2.556257 ACAAAGTACATGCACGTGACA 58.444 42.857 22.23 17.15 0.00 3.58
5857 8640 3.739300 AGTACAAAGTACATGCACGTGAC 59.261 43.478 22.23 11.46 0.00 3.67
5858 8641 3.985008 AGTACAAAGTACATGCACGTGA 58.015 40.909 22.23 4.80 0.00 4.35
5859 8642 4.725556 AAGTACAAAGTACATGCACGTG 57.274 40.909 12.28 12.28 0.00 4.49
5860 8643 9.806203 TTATATAAGTACAAAGTACATGCACGT 57.194 29.630 9.68 0.00 0.00 4.49
5874 8657 9.996554 AGCAGCACATACAATTATATAAGTACA 57.003 29.630 1.02 0.00 0.00 2.90
5876 8659 9.653287 GGAGCAGCACATACAATTATATAAGTA 57.347 33.333 1.02 0.00 0.00 2.24
5877 8660 8.156820 TGGAGCAGCACATACAATTATATAAGT 58.843 33.333 1.02 0.00 0.00 2.24
5878 8661 8.446273 GTGGAGCAGCACATACAATTATATAAG 58.554 37.037 1.02 0.00 0.00 1.73
5879 8662 7.117667 CGTGGAGCAGCACATACAATTATATAA 59.882 37.037 0.00 0.00 0.00 0.98
5880 8663 6.589907 CGTGGAGCAGCACATACAATTATATA 59.410 38.462 0.00 0.00 0.00 0.86
5881 8664 5.409520 CGTGGAGCAGCACATACAATTATAT 59.590 40.000 0.00 0.00 0.00 0.86
5882 8665 4.749598 CGTGGAGCAGCACATACAATTATA 59.250 41.667 0.00 0.00 0.00 0.98
5883 8666 3.561310 CGTGGAGCAGCACATACAATTAT 59.439 43.478 0.00 0.00 0.00 1.28
5884 8667 2.935849 CGTGGAGCAGCACATACAATTA 59.064 45.455 0.00 0.00 0.00 1.40
5885 8668 1.739466 CGTGGAGCAGCACATACAATT 59.261 47.619 0.00 0.00 0.00 2.32
5886 8669 1.372582 CGTGGAGCAGCACATACAAT 58.627 50.000 0.00 0.00 0.00 2.71
5887 8670 0.673333 CCGTGGAGCAGCACATACAA 60.673 55.000 0.00 0.00 0.00 2.41
5888 8671 1.079197 CCGTGGAGCAGCACATACA 60.079 57.895 0.00 0.00 0.00 2.29
5889 8672 0.391130 TTCCGTGGAGCAGCACATAC 60.391 55.000 0.00 0.00 0.00 2.39
5890 8673 0.323302 TTTCCGTGGAGCAGCACATA 59.677 50.000 0.00 0.00 0.00 2.29
5891 8674 0.537143 TTTTCCGTGGAGCAGCACAT 60.537 50.000 0.00 0.00 0.00 3.21
5892 8675 1.153066 TTTTCCGTGGAGCAGCACA 60.153 52.632 0.00 0.00 0.00 4.57
5893 8676 1.282875 GTTTTCCGTGGAGCAGCAC 59.717 57.895 0.00 0.00 0.00 4.40
5894 8677 1.896660 GGTTTTCCGTGGAGCAGCA 60.897 57.895 0.00 0.00 0.00 4.41
5895 8678 1.172812 AAGGTTTTCCGTGGAGCAGC 61.173 55.000 0.00 0.00 46.35 5.25
5896 8679 2.178912 TAAGGTTTTCCGTGGAGCAG 57.821 50.000 0.00 0.00 46.35 4.24
5900 8683 2.175284 AGGGTTTAAGGTTTTCCGTGGA 59.825 45.455 0.00 0.00 46.35 4.02
5913 8696 9.816787 AATACCAAGTTTGAGAATAGGGTTTAA 57.183 29.630 0.00 0.00 0.00 1.52
6038 8854 1.906824 GAGGAGGTGGTGGACGTCA 60.907 63.158 18.91 0.27 40.62 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.