Multiple sequence alignment - TraesCS1D01G308100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G308100 chr1D 100.000 3685 0 0 1 3685 404140952 404137268 0.000000e+00 6806.0
1 TraesCS1D01G308100 chr1B 95.991 848 22 6 2045 2889 543498383 543497545 0.000000e+00 1367.0
2 TraesCS1D01G308100 chr1B 85.819 1361 73 53 648 1922 543500392 543499066 0.000000e+00 1334.0
3 TraesCS1D01G308100 chr1B 87.279 283 17 8 3404 3685 543496866 543496602 4.620000e-79 305.0
4 TraesCS1D01G308100 chr1B 91.589 107 1 1 1919 2017 543498598 543498492 1.380000e-29 141.0
5 TraesCS1D01G308100 chr1B 78.715 249 22 9 2925 3170 543497543 543497323 1.780000e-28 137.0
6 TraesCS1D01G308100 chr1B 95.385 65 3 0 3169 3233 543497183 543497119 1.810000e-18 104.0
7 TraesCS1D01G308100 chr1A 88.937 1157 39 34 2045 3168 499785623 499784523 0.000000e+00 1345.0
8 TraesCS1D01G308100 chr1A 91.515 495 19 11 1566 2045 499786201 499785715 0.000000e+00 660.0
9 TraesCS1D01G308100 chr1A 87.174 460 25 13 601 1052 499787491 499787058 3.310000e-135 492.0
10 TraesCS1D01G308100 chr1A 95.070 284 12 2 3403 3685 499784116 499783834 2.610000e-121 446.0
11 TraesCS1D01G308100 chr1A 86.328 256 26 9 1240 1489 499786584 499786332 1.690000e-68 270.0
12 TraesCS1D01G308100 chr1A 83.217 143 14 6 1569 1709 475504565 475504431 5.000000e-24 122.0
13 TraesCS1D01G308100 chr1A 93.939 66 1 2 3168 3233 499784432 499784370 3.030000e-16 97.1
14 TraesCS1D01G308100 chr1A 85.263 95 5 1 1125 1219 499786721 499786636 5.070000e-14 89.8
15 TraesCS1D01G308100 chr3A 91.753 388 30 2 2300 2687 581274009 581274394 4.190000e-149 538.0
16 TraesCS1D01G308100 chr3A 96.250 80 3 0 999 1078 215482211 215482132 8.300000e-27 132.0
17 TraesCS1D01G308100 chr3A 83.217 143 14 7 1569 1709 697950373 697950239 5.000000e-24 122.0
18 TraesCS1D01G308100 chr3A 83.200 125 14 4 1569 1691 110085057 110084938 1.400000e-19 108.0
19 TraesCS1D01G308100 chr3D 91.731 387 30 2 2301 2687 441147388 441147772 1.510000e-148 536.0
20 TraesCS1D01G308100 chr3D 97.500 80 2 0 999 1078 175408286 175408207 1.780000e-28 137.0
21 TraesCS1D01G308100 chr3D 92.593 81 6 0 999 1079 441145019 441145099 2.330000e-22 117.0
22 TraesCS1D01G308100 chr3B 90.722 388 31 3 2300 2687 578401417 578401799 2.540000e-141 512.0
23 TraesCS1D01G308100 chr3B 96.250 80 3 0 999 1078 254779961 254779882 8.300000e-27 132.0
24 TraesCS1D01G308100 chr3B 92.593 81 6 0 999 1079 578399170 578399250 2.330000e-22 117.0
25 TraesCS1D01G308100 chr4B 90.981 377 34 0 2309 2685 390280735 390281111 3.280000e-140 508.0
26 TraesCS1D01G308100 chr4D 90.186 377 37 0 2309 2685 312800700 312800324 3.310000e-135 492.0
27 TraesCS1D01G308100 chr4A 89.655 377 39 0 2309 2685 163818734 163819110 7.160000e-132 481.0
28 TraesCS1D01G308100 chr2D 88.889 378 42 0 2309 2686 49877341 49877718 2.000000e-127 466.0
29 TraesCS1D01G308100 chr2D 93.671 79 5 0 1000 1078 49875921 49875999 6.460000e-23 119.0
30 TraesCS1D01G308100 chr2B 89.691 97 7 3 1000 1093 77168977 77169073 1.800000e-23 121.0
31 TraesCS1D01G308100 chr2A 93.671 79 5 0 1000 1078 51582360 51582438 6.460000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G308100 chr1D 404137268 404140952 3684 True 6806.000000 6806 100.000000 1 3685 1 chr1D.!!$R1 3684
1 TraesCS1D01G308100 chr1B 543496602 543500392 3790 True 564.666667 1367 89.129667 648 3685 6 chr1B.!!$R1 3037
2 TraesCS1D01G308100 chr1A 499783834 499787491 3657 True 485.700000 1345 89.746571 601 3685 7 chr1A.!!$R2 3084
3 TraesCS1D01G308100 chr3D 441145019 441147772 2753 False 326.500000 536 92.162000 999 2687 2 chr3D.!!$F1 1688
4 TraesCS1D01G308100 chr3B 578399170 578401799 2629 False 314.500000 512 91.657500 999 2687 2 chr3B.!!$F1 1688
5 TraesCS1D01G308100 chr2D 49875921 49877718 1797 False 292.500000 466 91.280000 1000 2686 2 chr2D.!!$F1 1686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.035056 GTGCAACTAGACCCTGGCAT 60.035 55.0 0.00 0.0 33.43 4.40 F
70 71 0.035152 TGCAACTAGACCCTGGCATG 60.035 55.0 0.00 0.0 0.00 4.06 F
334 335 0.035739 TTGTAAAGCCTGACCCGGAC 59.964 55.0 0.73 0.0 0.00 4.79 F
422 423 0.037232 GTAGCACACTCGCCCTTCTT 60.037 55.0 0.00 0.0 0.00 2.52 F
549 550 0.107508 ATCAACTCTCACCATGGCGG 60.108 55.0 13.04 4.4 42.50 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1157 1692 0.309302 CACCGACTGGATCTAGAGCG 59.691 60.000 13.73 14.63 39.21 5.03 R
1275 2357 1.407437 CCTTAACAGAGCAATCCGCCT 60.407 52.381 0.00 0.00 44.04 5.52 R
2182 5033 1.538047 CCAATGTGGGACTGAGTTGG 58.462 55.000 0.00 0.00 32.67 3.77 R
2291 5173 2.489329 ACCTGCAGGAAATTCAACATCG 59.511 45.455 39.19 7.55 38.94 3.84 R
2723 5610 5.047802 TCCAATCCACTTGAGAGCAAATTTC 60.048 40.000 0.00 0.00 36.97 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.565896 TCAATGAAACATGTAATCTTGCTAGT 57.434 30.769 0.00 0.00 0.00 2.57
26 27 9.013229 TCAATGAAACATGTAATCTTGCTAGTT 57.987 29.630 0.00 0.00 0.00 2.24
27 28 9.069078 CAATGAAACATGTAATCTTGCTAGTTG 57.931 33.333 0.00 0.00 0.00 3.16
28 29 7.744087 TGAAACATGTAATCTTGCTAGTTGT 57.256 32.000 0.00 0.00 0.00 3.32
29 30 8.165239 TGAAACATGTAATCTTGCTAGTTGTT 57.835 30.769 0.00 0.00 0.00 2.83
30 31 8.289618 TGAAACATGTAATCTTGCTAGTTGTTC 58.710 33.333 0.00 0.00 0.00 3.18
31 32 6.408858 ACATGTAATCTTGCTAGTTGTTCG 57.591 37.500 0.00 0.00 0.00 3.95
32 33 5.351465 ACATGTAATCTTGCTAGTTGTTCGG 59.649 40.000 0.00 0.00 0.00 4.30
33 34 4.890088 TGTAATCTTGCTAGTTGTTCGGT 58.110 39.130 0.00 0.00 0.00 4.69
34 35 5.302360 TGTAATCTTGCTAGTTGTTCGGTT 58.698 37.500 0.00 0.00 0.00 4.44
35 36 6.457355 TGTAATCTTGCTAGTTGTTCGGTTA 58.543 36.000 0.00 0.00 0.00 2.85
36 37 6.930164 TGTAATCTTGCTAGTTGTTCGGTTAA 59.070 34.615 0.00 0.00 0.00 2.01
37 38 6.481954 AATCTTGCTAGTTGTTCGGTTAAG 57.518 37.500 0.00 0.00 0.00 1.85
38 39 4.312443 TCTTGCTAGTTGTTCGGTTAAGG 58.688 43.478 0.00 0.00 0.00 2.69
39 40 4.039488 TCTTGCTAGTTGTTCGGTTAAGGA 59.961 41.667 0.00 0.00 0.00 3.36
40 41 4.339872 TGCTAGTTGTTCGGTTAAGGAA 57.660 40.909 0.00 0.00 0.00 3.36
41 42 4.060205 TGCTAGTTGTTCGGTTAAGGAAC 58.940 43.478 10.84 10.84 43.13 3.62
42 43 4.202284 TGCTAGTTGTTCGGTTAAGGAACT 60.202 41.667 16.19 0.00 43.21 3.01
43 44 4.388165 GCTAGTTGTTCGGTTAAGGAACTC 59.612 45.833 16.19 11.12 43.21 3.01
44 45 3.736720 AGTTGTTCGGTTAAGGAACTCC 58.263 45.455 16.19 9.28 43.21 3.85
45 46 3.135167 AGTTGTTCGGTTAAGGAACTCCA 59.865 43.478 16.19 3.23 43.21 3.86
46 47 4.070009 GTTGTTCGGTTAAGGAACTCCAT 58.930 43.478 16.19 0.00 43.21 3.41
47 48 4.360951 TGTTCGGTTAAGGAACTCCATT 57.639 40.909 16.19 0.00 43.21 3.16
48 49 5.486735 TGTTCGGTTAAGGAACTCCATTA 57.513 39.130 16.19 0.00 43.21 1.90
49 50 5.240121 TGTTCGGTTAAGGAACTCCATTAC 58.760 41.667 16.19 0.00 43.21 1.89
50 51 4.114058 TCGGTTAAGGAACTCCATTACG 57.886 45.455 0.00 0.00 38.49 3.18
51 52 3.511146 TCGGTTAAGGAACTCCATTACGT 59.489 43.478 0.00 0.00 38.49 3.57
52 53 3.615496 CGGTTAAGGAACTCCATTACGTG 59.385 47.826 0.00 0.00 38.49 4.49
53 54 3.373130 GGTTAAGGAACTCCATTACGTGC 59.627 47.826 0.00 0.00 38.49 5.34
54 55 2.851263 AAGGAACTCCATTACGTGCA 57.149 45.000 0.00 0.00 38.49 4.57
55 56 2.851263 AGGAACTCCATTACGTGCAA 57.149 45.000 0.00 0.00 38.89 4.08
56 57 2.423577 AGGAACTCCATTACGTGCAAC 58.576 47.619 0.00 0.00 38.89 4.17
57 58 2.038557 AGGAACTCCATTACGTGCAACT 59.961 45.455 0.00 0.00 38.89 3.16
58 59 3.259876 AGGAACTCCATTACGTGCAACTA 59.740 43.478 0.00 0.00 38.89 2.24
59 60 3.617263 GGAACTCCATTACGTGCAACTAG 59.383 47.826 0.00 0.00 35.64 2.57
60 61 4.491676 GAACTCCATTACGTGCAACTAGA 58.508 43.478 0.00 0.00 31.75 2.43
61 62 3.846360 ACTCCATTACGTGCAACTAGAC 58.154 45.455 0.00 0.00 31.75 2.59
62 63 3.187700 CTCCATTACGTGCAACTAGACC 58.812 50.000 0.00 0.00 31.75 3.85
63 64 2.093869 TCCATTACGTGCAACTAGACCC 60.094 50.000 0.00 0.00 31.75 4.46
64 65 2.093658 CCATTACGTGCAACTAGACCCT 60.094 50.000 0.00 0.00 31.75 4.34
65 66 2.736144 TTACGTGCAACTAGACCCTG 57.264 50.000 0.00 0.00 31.75 4.45
66 67 0.892755 TACGTGCAACTAGACCCTGG 59.107 55.000 0.00 0.00 31.75 4.45
67 68 1.741770 CGTGCAACTAGACCCTGGC 60.742 63.158 0.00 0.00 31.75 4.85
68 69 1.374947 GTGCAACTAGACCCTGGCA 59.625 57.895 0.00 0.00 0.00 4.92
69 70 0.035056 GTGCAACTAGACCCTGGCAT 60.035 55.000 0.00 0.00 33.43 4.40
70 71 0.035152 TGCAACTAGACCCTGGCATG 60.035 55.000 0.00 0.00 0.00 4.06
71 72 0.749454 GCAACTAGACCCTGGCATGG 60.749 60.000 7.32 7.32 0.00 3.66
72 73 0.911769 CAACTAGACCCTGGCATGGA 59.088 55.000 16.19 0.00 0.00 3.41
73 74 1.492176 CAACTAGACCCTGGCATGGAT 59.508 52.381 16.19 6.21 0.00 3.41
74 75 2.705658 CAACTAGACCCTGGCATGGATA 59.294 50.000 16.19 7.01 0.00 2.59
75 76 2.614259 ACTAGACCCTGGCATGGATAG 58.386 52.381 16.19 16.95 0.00 2.08
76 77 1.277557 CTAGACCCTGGCATGGATAGC 59.722 57.143 16.19 2.27 0.00 2.97
84 85 4.704833 CATGGATAGCCCGGCCCG 62.705 72.222 5.55 0.00 37.93 6.13
101 102 4.344865 GGACAGCCTGGCCCGAAA 62.345 66.667 16.57 0.00 40.64 3.46
102 103 2.747855 GACAGCCTGGCCCGAAAG 60.748 66.667 16.57 1.20 0.00 2.62
104 105 4.729918 CAGCCTGGCCCGAAAGCT 62.730 66.667 16.57 0.00 0.00 3.74
105 106 4.729918 AGCCTGGCCCGAAAGCTG 62.730 66.667 16.57 0.00 31.23 4.24
106 107 4.722700 GCCTGGCCCGAAAGCTGA 62.723 66.667 7.66 0.00 0.00 4.26
107 108 2.747855 CCTGGCCCGAAAGCTGAC 60.748 66.667 0.00 0.00 0.00 3.51
108 109 2.032528 CTGGCCCGAAAGCTGACA 59.967 61.111 0.00 0.00 0.00 3.58
109 110 2.281484 TGGCCCGAAAGCTGACAC 60.281 61.111 0.00 0.00 0.00 3.67
110 111 3.056328 GGCCCGAAAGCTGACACC 61.056 66.667 0.00 0.00 0.00 4.16
111 112 3.423154 GCCCGAAAGCTGACACCG 61.423 66.667 0.00 0.00 0.00 4.94
112 113 2.742372 CCCGAAAGCTGACACCGG 60.742 66.667 0.00 0.00 39.85 5.28
113 114 2.742372 CCGAAAGCTGACACCGGG 60.742 66.667 6.32 0.00 36.81 5.73
114 115 3.423154 CGAAAGCTGACACCGGGC 61.423 66.667 6.32 0.00 0.00 6.13
115 116 3.056328 GAAAGCTGACACCGGGCC 61.056 66.667 6.32 0.00 0.00 5.80
131 132 4.115199 CCGGGCTTGGGCTTAGCT 62.115 66.667 3.59 0.00 38.67 3.32
132 133 2.044946 CGGGCTTGGGCTTAGCTT 60.045 61.111 3.59 0.00 38.67 3.74
133 134 1.678970 CGGGCTTGGGCTTAGCTTT 60.679 57.895 3.59 0.00 38.67 3.51
134 135 1.250840 CGGGCTTGGGCTTAGCTTTT 61.251 55.000 3.59 0.00 38.67 2.27
135 136 0.976641 GGGCTTGGGCTTAGCTTTTT 59.023 50.000 3.59 0.00 38.67 1.94
136 137 1.066858 GGGCTTGGGCTTAGCTTTTTC 60.067 52.381 3.59 0.00 38.67 2.29
137 138 1.402852 GGCTTGGGCTTAGCTTTTTCG 60.403 52.381 3.59 0.00 38.67 3.46
138 139 1.982612 CTTGGGCTTAGCTTTTTCGC 58.017 50.000 3.59 0.00 0.00 4.70
139 140 0.601057 TTGGGCTTAGCTTTTTCGCC 59.399 50.000 3.59 0.00 39.98 5.54
141 142 1.136774 GGCTTAGCTTTTTCGCCCG 59.863 57.895 3.59 0.00 34.75 6.13
142 143 1.303091 GGCTTAGCTTTTTCGCCCGA 61.303 55.000 3.59 0.00 34.75 5.14
143 144 0.519961 GCTTAGCTTTTTCGCCCGAA 59.480 50.000 0.00 0.00 0.00 4.30
144 145 1.465856 GCTTAGCTTTTTCGCCCGAAG 60.466 52.381 0.00 0.00 35.38 3.79
145 146 0.519961 TTAGCTTTTTCGCCCGAAGC 59.480 50.000 0.00 4.22 44.58 3.86
146 147 1.303091 TAGCTTTTTCGCCCGAAGCC 61.303 55.000 8.68 0.00 45.18 4.35
147 148 2.566529 CTTTTTCGCCCGAAGCCC 59.433 61.111 3.21 0.00 38.78 5.19
148 149 3.322706 CTTTTTCGCCCGAAGCCCG 62.323 63.158 3.21 0.00 38.78 6.13
157 158 3.188786 CGAAGCCCGGCTCGAAAG 61.189 66.667 13.72 0.00 38.25 2.62
169 170 1.674908 CTCGAAAGCACGAAAAAGCC 58.325 50.000 0.00 0.00 41.67 4.35
170 171 0.309612 TCGAAAGCACGAAAAAGCCC 59.690 50.000 0.00 0.00 39.34 5.19
171 172 0.996727 CGAAAGCACGAAAAAGCCCG 60.997 55.000 0.00 0.00 35.09 6.13
172 173 0.663269 GAAAGCACGAAAAAGCCCGG 60.663 55.000 0.00 0.00 0.00 5.73
173 174 1.104577 AAAGCACGAAAAAGCCCGGA 61.105 50.000 0.73 0.00 0.00 5.14
174 175 1.792118 AAGCACGAAAAAGCCCGGAC 61.792 55.000 0.73 0.00 0.00 4.79
175 176 2.548295 GCACGAAAAAGCCCGGACA 61.548 57.895 0.73 0.00 0.00 4.02
176 177 1.862602 GCACGAAAAAGCCCGGACAT 61.863 55.000 0.73 0.00 0.00 3.06
177 178 0.109781 CACGAAAAAGCCCGGACATG 60.110 55.000 0.73 0.00 0.00 3.21
178 179 1.241315 ACGAAAAAGCCCGGACATGG 61.241 55.000 0.73 0.00 0.00 3.66
188 189 3.915437 CCCGGACATGGCATAAATAAC 57.085 47.619 0.73 0.00 0.00 1.89
189 190 3.486383 CCCGGACATGGCATAAATAACT 58.514 45.455 0.73 0.00 0.00 2.24
190 191 4.647611 CCCGGACATGGCATAAATAACTA 58.352 43.478 0.73 0.00 0.00 2.24
191 192 4.454504 CCCGGACATGGCATAAATAACTAC 59.545 45.833 0.73 0.00 0.00 2.73
192 193 5.305585 CCGGACATGGCATAAATAACTACT 58.694 41.667 0.00 0.00 0.00 2.57
193 194 5.763204 CCGGACATGGCATAAATAACTACTT 59.237 40.000 0.00 0.00 0.00 2.24
194 195 6.262273 CCGGACATGGCATAAATAACTACTTT 59.738 38.462 0.00 0.00 0.00 2.66
195 196 7.442969 CCGGACATGGCATAAATAACTACTTTA 59.557 37.037 0.00 0.00 0.00 1.85
196 197 8.999431 CGGACATGGCATAAATAACTACTTTAT 58.001 33.333 0.00 0.00 31.07 1.40
272 273 9.593134 TTAATTTTAAAAGTGCACTGTTCATGT 57.407 25.926 25.52 11.02 0.00 3.21
273 274 6.884096 TTTTAAAAGTGCACTGTTCATGTG 57.116 33.333 25.52 0.00 38.36 3.21
274 275 5.574891 TTAAAAGTGCACTGTTCATGTGT 57.425 34.783 25.52 2.81 37.70 3.72
275 276 4.454728 AAAAGTGCACTGTTCATGTGTT 57.545 36.364 22.49 4.29 37.70 3.32
276 277 4.454728 AAAGTGCACTGTTCATGTGTTT 57.545 36.364 22.49 3.47 37.70 2.83
277 278 3.698029 AGTGCACTGTTCATGTGTTTC 57.302 42.857 20.97 0.00 37.70 2.78
278 279 2.032054 AGTGCACTGTTCATGTGTTTCG 59.968 45.455 20.97 0.00 37.70 3.46
279 280 1.333308 TGCACTGTTCATGTGTTTCGG 59.667 47.619 0.00 0.00 37.70 4.30
280 281 1.334960 GCACTGTTCATGTGTTTCGGG 60.335 52.381 0.00 0.00 37.70 5.14
281 282 0.951558 ACTGTTCATGTGTTTCGGGC 59.048 50.000 0.00 0.00 0.00 6.13
282 283 1.238439 CTGTTCATGTGTTTCGGGCT 58.762 50.000 0.00 0.00 0.00 5.19
283 284 1.197721 CTGTTCATGTGTTTCGGGCTC 59.802 52.381 0.00 0.00 0.00 4.70
284 285 0.165944 GTTCATGTGTTTCGGGCTCG 59.834 55.000 0.00 0.00 37.82 5.03
285 286 0.953471 TTCATGTGTTTCGGGCTCGG 60.953 55.000 5.94 0.00 36.95 4.63
286 287 2.046314 ATGTGTTTCGGGCTCGGG 60.046 61.111 5.94 0.00 36.95 5.14
287 288 2.589157 ATGTGTTTCGGGCTCGGGA 61.589 57.895 5.94 0.00 36.95 5.14
288 289 2.031465 GTGTTTCGGGCTCGGGAA 59.969 61.111 5.94 0.00 36.95 3.97
289 290 1.376812 GTGTTTCGGGCTCGGGAAT 60.377 57.895 5.94 0.00 36.95 3.01
290 291 1.376683 TGTTTCGGGCTCGGGAATG 60.377 57.895 5.94 0.00 36.95 2.67
291 292 2.112815 GTTTCGGGCTCGGGAATGG 61.113 63.158 5.94 0.00 36.95 3.16
292 293 3.338275 TTTCGGGCTCGGGAATGGG 62.338 63.158 5.94 0.00 36.95 4.00
293 294 4.789173 TCGGGCTCGGGAATGGGA 62.789 66.667 5.94 0.00 36.95 4.37
294 295 3.560251 CGGGCTCGGGAATGGGAT 61.560 66.667 0.00 0.00 0.00 3.85
295 296 2.927056 GGGCTCGGGAATGGGATT 59.073 61.111 0.00 0.00 0.00 3.01
296 297 1.529244 GGGCTCGGGAATGGGATTG 60.529 63.158 0.00 0.00 0.00 2.67
297 298 1.529244 GGCTCGGGAATGGGATTGG 60.529 63.158 0.00 0.00 0.00 3.16
298 299 1.529244 GCTCGGGAATGGGATTGGG 60.529 63.158 0.00 0.00 0.00 4.12
299 300 1.994885 GCTCGGGAATGGGATTGGGA 61.995 60.000 0.00 0.00 0.00 4.37
300 301 0.109342 CTCGGGAATGGGATTGGGAG 59.891 60.000 0.00 0.00 0.00 4.30
301 302 0.623324 TCGGGAATGGGATTGGGAGT 60.623 55.000 0.00 0.00 0.00 3.85
302 303 0.258774 CGGGAATGGGATTGGGAGTT 59.741 55.000 0.00 0.00 0.00 3.01
303 304 1.341976 CGGGAATGGGATTGGGAGTTT 60.342 52.381 0.00 0.00 0.00 2.66
304 305 2.110578 GGGAATGGGATTGGGAGTTTG 58.889 52.381 0.00 0.00 0.00 2.93
305 306 2.292192 GGGAATGGGATTGGGAGTTTGA 60.292 50.000 0.00 0.00 0.00 2.69
306 307 3.026694 GGAATGGGATTGGGAGTTTGAG 58.973 50.000 0.00 0.00 0.00 3.02
307 308 2.834638 ATGGGATTGGGAGTTTGAGG 57.165 50.000 0.00 0.00 0.00 3.86
308 309 1.455822 TGGGATTGGGAGTTTGAGGT 58.544 50.000 0.00 0.00 0.00 3.85
309 310 1.786441 TGGGATTGGGAGTTTGAGGTT 59.214 47.619 0.00 0.00 0.00 3.50
310 311 2.171003 GGGATTGGGAGTTTGAGGTTG 58.829 52.381 0.00 0.00 0.00 3.77
311 312 2.171003 GGATTGGGAGTTTGAGGTTGG 58.829 52.381 0.00 0.00 0.00 3.77
312 313 2.171003 GATTGGGAGTTTGAGGTTGGG 58.829 52.381 0.00 0.00 0.00 4.12
313 314 0.469144 TTGGGAGTTTGAGGTTGGGC 60.469 55.000 0.00 0.00 0.00 5.36
314 315 1.360393 TGGGAGTTTGAGGTTGGGCT 61.360 55.000 0.00 0.00 0.00 5.19
315 316 0.178961 GGGAGTTTGAGGTTGGGCTT 60.179 55.000 0.00 0.00 0.00 4.35
316 317 1.704641 GGAGTTTGAGGTTGGGCTTT 58.295 50.000 0.00 0.00 0.00 3.51
317 318 1.341209 GGAGTTTGAGGTTGGGCTTTG 59.659 52.381 0.00 0.00 0.00 2.77
318 319 2.031870 GAGTTTGAGGTTGGGCTTTGT 58.968 47.619 0.00 0.00 0.00 2.83
319 320 3.219281 GAGTTTGAGGTTGGGCTTTGTA 58.781 45.455 0.00 0.00 0.00 2.41
320 321 3.634910 GAGTTTGAGGTTGGGCTTTGTAA 59.365 43.478 0.00 0.00 0.00 2.41
321 322 4.027437 AGTTTGAGGTTGGGCTTTGTAAA 58.973 39.130 0.00 0.00 0.00 2.01
322 323 4.099419 AGTTTGAGGTTGGGCTTTGTAAAG 59.901 41.667 0.05 0.05 39.03 1.85
332 333 1.165270 CTTTGTAAAGCCTGACCCGG 58.835 55.000 0.00 0.00 0.00 5.73
333 334 0.766131 TTTGTAAAGCCTGACCCGGA 59.234 50.000 0.73 0.00 0.00 5.14
334 335 0.035739 TTGTAAAGCCTGACCCGGAC 59.964 55.000 0.73 0.00 0.00 4.79
335 336 0.834687 TGTAAAGCCTGACCCGGACT 60.835 55.000 0.73 0.00 0.00 3.85
336 337 1.188863 GTAAAGCCTGACCCGGACTA 58.811 55.000 0.73 0.00 0.00 2.59
337 338 1.136500 GTAAAGCCTGACCCGGACTAG 59.864 57.143 0.73 0.00 0.00 2.57
338 339 1.265454 AAAGCCTGACCCGGACTAGG 61.265 60.000 0.73 8.35 0.00 3.02
340 341 3.155167 CCTGACCCGGACTAGGCC 61.155 72.222 3.74 3.74 0.00 5.19
341 342 3.155167 CTGACCCGGACTAGGCCC 61.155 72.222 9.73 0.68 0.00 5.80
342 343 4.791069 TGACCCGGACTAGGCCCC 62.791 72.222 9.73 0.00 0.00 5.80
363 364 2.677228 CGGAGGATGCCCAGGTTT 59.323 61.111 0.00 0.00 33.88 3.27
364 365 1.912220 CGGAGGATGCCCAGGTTTA 59.088 57.895 0.00 0.00 33.88 2.01
365 366 0.463833 CGGAGGATGCCCAGGTTTAC 60.464 60.000 0.00 0.00 33.88 2.01
366 367 0.623723 GGAGGATGCCCAGGTTTACA 59.376 55.000 0.00 0.00 33.88 2.41
367 368 1.215423 GGAGGATGCCCAGGTTTACAT 59.785 52.381 0.00 0.00 33.88 2.29
368 369 2.301346 GAGGATGCCCAGGTTTACATG 58.699 52.381 0.00 0.00 33.88 3.21
369 370 0.746659 GGATGCCCAGGTTTACATGC 59.253 55.000 0.00 0.00 0.00 4.06
370 371 1.473258 GATGCCCAGGTTTACATGCA 58.527 50.000 0.00 0.00 0.00 3.96
371 372 1.824230 GATGCCCAGGTTTACATGCAA 59.176 47.619 0.00 0.00 31.81 4.08
372 373 0.965439 TGCCCAGGTTTACATGCAAC 59.035 50.000 0.00 0.00 0.00 4.17
373 374 0.965439 GCCCAGGTTTACATGCAACA 59.035 50.000 9.86 0.00 0.00 3.33
374 375 1.550072 GCCCAGGTTTACATGCAACAT 59.450 47.619 9.86 0.96 0.00 2.71
375 376 2.674747 GCCCAGGTTTACATGCAACATG 60.675 50.000 13.47 13.47 36.03 3.21
376 377 3.235157 CCAGGTTTACATGCAACATGG 57.765 47.619 21.21 21.21 46.44 3.66
377 378 2.562298 CCAGGTTTACATGCAACATGGT 59.438 45.455 24.18 0.00 46.44 3.55
378 379 3.761218 CCAGGTTTACATGCAACATGGTA 59.239 43.478 24.18 0.00 46.44 3.25
379 380 4.402155 CCAGGTTTACATGCAACATGGTAT 59.598 41.667 24.18 0.00 46.44 2.73
380 381 5.450412 CCAGGTTTACATGCAACATGGTATC 60.450 44.000 24.18 3.40 46.44 2.24
381 382 4.644685 AGGTTTACATGCAACATGGTATCC 59.355 41.667 11.91 8.60 0.00 2.59
382 383 4.644685 GGTTTACATGCAACATGGTATCCT 59.355 41.667 11.91 0.00 0.00 3.24
383 384 5.127031 GGTTTACATGCAACATGGTATCCTT 59.873 40.000 11.91 0.00 0.00 3.36
384 385 6.265577 GTTTACATGCAACATGGTATCCTTC 58.734 40.000 11.91 0.00 0.00 3.46
385 386 4.240881 ACATGCAACATGGTATCCTTCT 57.759 40.909 11.91 0.00 0.00 2.85
386 387 3.949754 ACATGCAACATGGTATCCTTCTG 59.050 43.478 11.91 0.00 0.00 3.02
387 388 3.719268 TGCAACATGGTATCCTTCTGT 57.281 42.857 0.00 0.00 0.00 3.41
388 389 3.346315 TGCAACATGGTATCCTTCTGTG 58.654 45.455 0.00 0.00 0.00 3.66
389 390 3.244875 TGCAACATGGTATCCTTCTGTGT 60.245 43.478 0.00 0.00 0.00 3.72
390 391 3.127548 GCAACATGGTATCCTTCTGTGTG 59.872 47.826 0.00 0.00 0.00 3.82
391 392 2.991250 ACATGGTATCCTTCTGTGTGC 58.009 47.619 0.00 0.00 0.00 4.57
392 393 2.573462 ACATGGTATCCTTCTGTGTGCT 59.427 45.455 0.00 0.00 0.00 4.40
393 394 3.009473 ACATGGTATCCTTCTGTGTGCTT 59.991 43.478 0.00 0.00 0.00 3.91
394 395 3.788227 TGGTATCCTTCTGTGTGCTTT 57.212 42.857 0.00 0.00 0.00 3.51
395 396 4.098914 TGGTATCCTTCTGTGTGCTTTT 57.901 40.909 0.00 0.00 0.00 2.27
396 397 4.469657 TGGTATCCTTCTGTGTGCTTTTT 58.530 39.130 0.00 0.00 0.00 1.94
397 398 4.518970 TGGTATCCTTCTGTGTGCTTTTTC 59.481 41.667 0.00 0.00 0.00 2.29
398 399 4.082733 GGTATCCTTCTGTGTGCTTTTTCC 60.083 45.833 0.00 0.00 0.00 3.13
399 400 2.306847 TCCTTCTGTGTGCTTTTTCCC 58.693 47.619 0.00 0.00 0.00 3.97
400 401 2.091885 TCCTTCTGTGTGCTTTTTCCCT 60.092 45.455 0.00 0.00 0.00 4.20
401 402 2.695147 CCTTCTGTGTGCTTTTTCCCTT 59.305 45.455 0.00 0.00 0.00 3.95
402 403 3.132824 CCTTCTGTGTGCTTTTTCCCTTT 59.867 43.478 0.00 0.00 0.00 3.11
403 404 3.799281 TCTGTGTGCTTTTTCCCTTTG 57.201 42.857 0.00 0.00 0.00 2.77
404 405 3.096092 TCTGTGTGCTTTTTCCCTTTGT 58.904 40.909 0.00 0.00 0.00 2.83
405 406 4.274147 TCTGTGTGCTTTTTCCCTTTGTA 58.726 39.130 0.00 0.00 0.00 2.41
406 407 4.338118 TCTGTGTGCTTTTTCCCTTTGTAG 59.662 41.667 0.00 0.00 0.00 2.74
407 408 3.181480 TGTGTGCTTTTTCCCTTTGTAGC 60.181 43.478 0.00 0.00 0.00 3.58
408 409 3.027412 TGTGCTTTTTCCCTTTGTAGCA 58.973 40.909 0.00 0.00 36.38 3.49
409 410 3.726291 TGCTTTTTCCCTTTGTAGCAC 57.274 42.857 0.00 0.00 34.05 4.40
410 411 3.027412 TGCTTTTTCCCTTTGTAGCACA 58.973 40.909 0.00 0.00 34.05 4.57
411 412 3.181480 TGCTTTTTCCCTTTGTAGCACAC 60.181 43.478 0.00 0.00 34.05 3.82
412 413 3.068165 GCTTTTTCCCTTTGTAGCACACT 59.932 43.478 0.00 0.00 0.00 3.55
413 414 4.793028 GCTTTTTCCCTTTGTAGCACACTC 60.793 45.833 0.00 0.00 0.00 3.51
414 415 2.163818 TTCCCTTTGTAGCACACTCG 57.836 50.000 0.00 0.00 0.00 4.18
415 416 0.320421 TCCCTTTGTAGCACACTCGC 60.320 55.000 0.00 0.00 0.00 5.03
416 417 1.298859 CCCTTTGTAGCACACTCGCC 61.299 60.000 0.00 0.00 0.00 5.54
417 418 1.298859 CCTTTGTAGCACACTCGCCC 61.299 60.000 0.00 0.00 0.00 6.13
418 419 0.320771 CTTTGTAGCACACTCGCCCT 60.321 55.000 0.00 0.00 0.00 5.19
419 420 0.107831 TTTGTAGCACACTCGCCCTT 59.892 50.000 0.00 0.00 0.00 3.95
420 421 0.320421 TTGTAGCACACTCGCCCTTC 60.320 55.000 0.00 0.00 0.00 3.46
421 422 1.185618 TGTAGCACACTCGCCCTTCT 61.186 55.000 0.00 0.00 0.00 2.85
422 423 0.037232 GTAGCACACTCGCCCTTCTT 60.037 55.000 0.00 0.00 0.00 2.52
423 424 0.685097 TAGCACACTCGCCCTTCTTT 59.315 50.000 0.00 0.00 0.00 2.52
424 425 0.179018 AGCACACTCGCCCTTCTTTT 60.179 50.000 0.00 0.00 0.00 2.27
425 426 0.668535 GCACACTCGCCCTTCTTTTT 59.331 50.000 0.00 0.00 0.00 1.94
444 445 3.914426 TTTCCTTGGCTCTCTACATCC 57.086 47.619 0.00 0.00 0.00 3.51
445 446 2.856760 TCCTTGGCTCTCTACATCCT 57.143 50.000 0.00 0.00 0.00 3.24
446 447 3.121929 TCCTTGGCTCTCTACATCCTT 57.878 47.619 0.00 0.00 0.00 3.36
447 448 3.454858 TCCTTGGCTCTCTACATCCTTT 58.545 45.455 0.00 0.00 0.00 3.11
448 449 4.620723 TCCTTGGCTCTCTACATCCTTTA 58.379 43.478 0.00 0.00 0.00 1.85
449 450 4.651503 TCCTTGGCTCTCTACATCCTTTAG 59.348 45.833 0.00 0.00 0.00 1.85
450 451 4.202305 CCTTGGCTCTCTACATCCTTTAGG 60.202 50.000 0.00 0.00 0.00 2.69
465 466 5.464069 TCCTTTAGGATGCTCTATACACCA 58.536 41.667 0.00 0.00 39.78 4.17
466 467 6.084738 TCCTTTAGGATGCTCTATACACCAT 58.915 40.000 0.00 0.00 39.78 3.55
467 468 7.246027 TCCTTTAGGATGCTCTATACACCATA 58.754 38.462 0.00 0.00 39.78 2.74
468 469 7.733047 TCCTTTAGGATGCTCTATACACCATAA 59.267 37.037 0.00 0.00 39.78 1.90
469 470 7.819900 CCTTTAGGATGCTCTATACACCATAAC 59.180 40.741 0.00 0.00 37.39 1.89
470 471 7.849322 TTAGGATGCTCTATACACCATAACA 57.151 36.000 0.00 0.00 0.00 2.41
471 472 6.102897 AGGATGCTCTATACACCATAACAC 57.897 41.667 0.00 0.00 0.00 3.32
472 473 5.841237 AGGATGCTCTATACACCATAACACT 59.159 40.000 0.00 0.00 0.00 3.55
473 474 6.327626 AGGATGCTCTATACACCATAACACTT 59.672 38.462 0.00 0.00 0.00 3.16
474 475 6.992715 GGATGCTCTATACACCATAACACTTT 59.007 38.462 0.00 0.00 0.00 2.66
475 476 7.499232 GGATGCTCTATACACCATAACACTTTT 59.501 37.037 0.00 0.00 0.00 2.27
476 477 8.807948 ATGCTCTATACACCATAACACTTTTT 57.192 30.769 0.00 0.00 0.00 1.94
505 506 8.450578 TCATTGTTGAGGTGCTAAATAATAGG 57.549 34.615 0.00 0.00 0.00 2.57
506 507 7.502226 TCATTGTTGAGGTGCTAAATAATAGGG 59.498 37.037 0.00 0.00 0.00 3.53
507 508 6.569127 TGTTGAGGTGCTAAATAATAGGGA 57.431 37.500 0.00 0.00 0.00 4.20
508 509 6.354130 TGTTGAGGTGCTAAATAATAGGGAC 58.646 40.000 0.00 0.00 0.00 4.46
509 510 6.069905 TGTTGAGGTGCTAAATAATAGGGACA 60.070 38.462 0.00 0.00 0.00 4.02
510 511 6.569127 TGAGGTGCTAAATAATAGGGACAA 57.431 37.500 0.00 0.00 0.00 3.18
511 512 6.354130 TGAGGTGCTAAATAATAGGGACAAC 58.646 40.000 0.00 0.00 0.00 3.32
512 513 5.691896 AGGTGCTAAATAATAGGGACAACC 58.308 41.667 0.00 0.00 40.67 3.77
523 524 2.286365 GGGACAACCTTTCATGACCA 57.714 50.000 0.00 0.00 33.79 4.02
524 525 2.807676 GGGACAACCTTTCATGACCAT 58.192 47.619 0.00 0.00 33.79 3.55
525 526 2.755103 GGGACAACCTTTCATGACCATC 59.245 50.000 0.00 0.00 33.79 3.51
526 527 3.420893 GGACAACCTTTCATGACCATCA 58.579 45.455 0.00 0.00 32.64 3.07
527 528 4.019174 GGACAACCTTTCATGACCATCAT 58.981 43.478 0.00 0.00 37.65 2.45
528 529 7.123218 GGGACAACCTTTCATGACCATCATG 62.123 48.000 11.78 11.78 44.80 3.07
539 540 6.782298 CATGACCATCATGTATCAACTCTC 57.218 41.667 10.11 0.00 46.80 3.20
540 541 5.937975 TGACCATCATGTATCAACTCTCA 57.062 39.130 0.00 0.00 0.00 3.27
541 542 5.664457 TGACCATCATGTATCAACTCTCAC 58.336 41.667 0.00 0.00 0.00 3.51
542 543 5.028549 ACCATCATGTATCAACTCTCACC 57.971 43.478 0.00 0.00 0.00 4.02
543 544 4.471025 ACCATCATGTATCAACTCTCACCA 59.529 41.667 0.00 0.00 0.00 4.17
544 545 5.131642 ACCATCATGTATCAACTCTCACCAT 59.868 40.000 0.00 0.00 0.00 3.55
545 546 5.469084 CCATCATGTATCAACTCTCACCATG 59.531 44.000 0.00 0.00 0.00 3.66
546 547 5.027293 TCATGTATCAACTCTCACCATGG 57.973 43.478 11.19 11.19 31.49 3.66
547 548 3.266510 TGTATCAACTCTCACCATGGC 57.733 47.619 13.04 0.00 0.00 4.40
548 549 2.205074 GTATCAACTCTCACCATGGCG 58.795 52.381 13.04 1.26 0.00 5.69
549 550 0.107508 ATCAACTCTCACCATGGCGG 60.108 55.000 13.04 4.40 42.50 6.13
550 551 2.045926 AACTCTCACCATGGCGGC 60.046 61.111 13.04 0.00 39.03 6.53
551 552 3.628646 AACTCTCACCATGGCGGCC 62.629 63.158 13.04 13.32 39.03 6.13
573 574 3.523606 CTGCACTCAGCTCTCATTACT 57.476 47.619 0.00 0.00 45.94 2.24
574 575 4.645762 CTGCACTCAGCTCTCATTACTA 57.354 45.455 0.00 0.00 45.94 1.82
575 576 5.003692 CTGCACTCAGCTCTCATTACTAA 57.996 43.478 0.00 0.00 45.94 2.24
576 577 5.003692 TGCACTCAGCTCTCATTACTAAG 57.996 43.478 0.00 0.00 45.94 2.18
577 578 4.464244 TGCACTCAGCTCTCATTACTAAGT 59.536 41.667 0.00 0.00 45.94 2.24
578 579 5.040635 GCACTCAGCTCTCATTACTAAGTC 58.959 45.833 0.00 0.00 41.15 3.01
579 580 5.163561 GCACTCAGCTCTCATTACTAAGTCT 60.164 44.000 0.00 0.00 41.15 3.24
580 581 6.627065 GCACTCAGCTCTCATTACTAAGTCTT 60.627 42.308 0.00 0.00 41.15 3.01
581 582 7.319646 CACTCAGCTCTCATTACTAAGTCTTT 58.680 38.462 0.00 0.00 0.00 2.52
582 583 7.816995 CACTCAGCTCTCATTACTAAGTCTTTT 59.183 37.037 0.00 0.00 0.00 2.27
583 584 8.371699 ACTCAGCTCTCATTACTAAGTCTTTTT 58.628 33.333 0.00 0.00 0.00 1.94
584 585 8.764524 TCAGCTCTCATTACTAAGTCTTTTTC 57.235 34.615 0.00 0.00 0.00 2.29
585 586 8.589338 TCAGCTCTCATTACTAAGTCTTTTTCT 58.411 33.333 0.00 0.00 0.00 2.52
586 587 9.213799 CAGCTCTCATTACTAAGTCTTTTTCTT 57.786 33.333 0.00 0.00 0.00 2.52
587 588 9.430623 AGCTCTCATTACTAAGTCTTTTTCTTC 57.569 33.333 0.00 0.00 0.00 2.87
588 589 9.430623 GCTCTCATTACTAAGTCTTTTTCTTCT 57.569 33.333 0.00 0.00 0.00 2.85
595 596 6.949449 ACTAAGTCTTTTTCTTCTTCTTGCG 58.051 36.000 0.00 0.00 0.00 4.85
596 597 6.761714 ACTAAGTCTTTTTCTTCTTCTTGCGA 59.238 34.615 0.00 0.00 0.00 5.10
597 598 6.436843 AAGTCTTTTTCTTCTTCTTGCGAA 57.563 33.333 0.00 0.00 0.00 4.70
598 599 6.625873 AGTCTTTTTCTTCTTCTTGCGAAT 57.374 33.333 0.00 0.00 0.00 3.34
599 600 7.730364 AGTCTTTTTCTTCTTCTTGCGAATA 57.270 32.000 0.00 0.00 0.00 1.75
605 606 7.672983 TTTCTTCTTCTTGCGAATACTCATT 57.327 32.000 0.00 0.00 0.00 2.57
606 607 6.653273 TCTTCTTCTTGCGAATACTCATTG 57.347 37.500 0.00 0.00 0.00 2.82
673 678 4.287067 TCAGAACTCAATGGAGCCTAAAGT 59.713 41.667 0.00 0.00 45.42 2.66
674 679 5.483937 TCAGAACTCAATGGAGCCTAAAGTA 59.516 40.000 0.00 0.00 45.42 2.24
719 728 6.208599 ACAAGAATAAACATGGAAACCATCGT 59.791 34.615 0.00 1.15 43.15 3.73
723 732 0.521291 ACATGGAAACCATCGTTGCG 59.479 50.000 0.00 0.00 43.15 4.85
745 754 3.876914 GCAATCGAGTATGAATGGAACCA 59.123 43.478 0.00 0.00 0.00 3.67
834 843 0.448990 GATACAAAACCGGCGGTTCC 59.551 55.000 40.86 22.16 46.20 3.62
861 871 0.532196 CTTCCCCCTCGTTAATCGCC 60.532 60.000 0.00 0.00 39.67 5.54
863 873 1.523032 CCCCCTCGTTAATCGCCAC 60.523 63.158 0.00 0.00 39.67 5.01
941 953 3.493334 CCCCGTTTATTATTCCCCTTCC 58.507 50.000 0.00 0.00 0.00 3.46
981 994 3.843240 CGCGCACCTTCTCGAAGC 61.843 66.667 8.75 0.00 37.11 3.86
982 995 3.491652 GCGCACCTTCTCGAAGCC 61.492 66.667 0.30 0.00 37.11 4.35
983 996 2.262915 CGCACCTTCTCGAAGCCT 59.737 61.111 1.13 0.00 37.11 4.58
984 997 1.807573 CGCACCTTCTCGAAGCCTC 60.808 63.158 1.13 0.00 37.11 4.70
985 998 1.448717 GCACCTTCTCGAAGCCTCC 60.449 63.158 1.13 0.00 37.11 4.30
986 999 1.893919 GCACCTTCTCGAAGCCTCCT 61.894 60.000 1.13 0.00 37.11 3.69
987 1000 0.174617 CACCTTCTCGAAGCCTCCTC 59.825 60.000 1.13 0.00 37.11 3.71
988 1001 0.973496 ACCTTCTCGAAGCCTCCTCC 60.973 60.000 1.13 0.00 37.11 4.30
989 1002 1.681486 CCTTCTCGAAGCCTCCTCCC 61.681 65.000 1.13 0.00 37.11 4.30
990 1003 0.686112 CTTCTCGAAGCCTCCTCCCT 60.686 60.000 0.00 0.00 0.00 4.20
991 1004 0.684805 TTCTCGAAGCCTCCTCCCTC 60.685 60.000 0.00 0.00 0.00 4.30
1100 1136 2.641746 CCCCCTCTCCCCTGTCTCT 61.642 68.421 0.00 0.00 0.00 3.10
1102 1138 1.589399 CCCCTCTCCCCTGTCTCTCT 61.589 65.000 0.00 0.00 0.00 3.10
1104 1140 0.926293 CCTCTCCCCTGTCTCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
1157 1692 1.534729 ATTGGGTTTTGTCTCGGAGC 58.465 50.000 0.00 0.00 0.00 4.70
1169 1704 0.886938 CTCGGAGCGCTCTAGATCCA 60.887 60.000 34.46 13.31 46.36 3.41
1216 1751 3.117663 TCTCTTTAGGCCTTTGGTGTTGT 60.118 43.478 12.58 0.00 0.00 3.32
1219 1754 1.989706 TAGGCCTTTGGTGTTGTTCC 58.010 50.000 12.58 0.00 0.00 3.62
1409 3315 2.987821 GAGCTGTAGAGTGTTTCGGAAC 59.012 50.000 0.00 0.00 36.29 3.62
1415 3321 6.395426 TGTAGAGTGTTTCGGAACTTCTAA 57.605 37.500 17.46 9.42 35.95 2.10
1425 3331 7.093727 TGTTTCGGAACTTCTAATGAGAGAGAT 60.094 37.037 8.32 0.00 36.70 2.75
1518 3733 4.202305 GGACTAGATGGAGAATTGGAGGTG 60.202 50.000 0.00 0.00 0.00 4.00
1519 3734 4.366267 ACTAGATGGAGAATTGGAGGTGT 58.634 43.478 0.00 0.00 0.00 4.16
1621 3883 5.010922 AGCTTCTGATGATAGCCTAGAAGTG 59.989 44.000 13.78 0.00 43.76 3.16
1656 3918 7.175293 AGTCTTAACTGTGTAGTCTAAGACCAG 59.825 40.741 21.87 3.52 44.94 4.00
1687 3949 9.658799 TGATTTGTAGATTCCTCTTTTCTAGTG 57.341 33.333 0.00 0.00 32.66 2.74
1689 3951 9.660180 ATTTGTAGATTCCTCTTTTCTAGTGTC 57.340 33.333 0.00 0.00 32.66 3.67
1690 3952 7.776618 TGTAGATTCCTCTTTTCTAGTGTCA 57.223 36.000 0.00 0.00 32.66 3.58
1692 3954 9.475620 TGTAGATTCCTCTTTTCTAGTGTCATA 57.524 33.333 0.00 0.00 32.66 2.15
1695 3957 8.691797 AGATTCCTCTTTTCTAGTGTCATAGTC 58.308 37.037 0.00 0.00 0.00 2.59
1878 4143 7.988737 TCATATGTTAAATGGACAGCAAGAAG 58.011 34.615 1.90 0.00 0.00 2.85
1994 4753 8.246180 TCTTCAGCTGTTCATAAATTGATTTCC 58.754 33.333 14.67 0.00 33.34 3.13
2167 5018 9.155975 GGAGGTATTATGACATATCATGTGTTC 57.844 37.037 0.00 0.00 45.54 3.18
2179 5030 9.770097 ACATATCATGTGTTCTTAGGACAATAG 57.230 33.333 0.00 0.00 43.01 1.73
2180 5031 9.987272 CATATCATGTGTTCTTAGGACAATAGA 57.013 33.333 0.00 0.00 0.00 1.98
2182 5033 8.723942 ATCATGTGTTCTTAGGACAATAGAAC 57.276 34.615 0.00 0.00 44.97 3.01
2188 5039 7.117956 GTGTTCTTAGGACAATAGAACCAACTC 59.882 40.741 0.00 0.00 44.42 3.01
2193 5044 4.020128 AGGACAATAGAACCAACTCAGTCC 60.020 45.833 0.00 0.00 42.43 3.85
2240 5091 4.941263 CGAACAGACCAATCTTAAATCCCA 59.059 41.667 0.00 0.00 30.42 4.37
2289 5171 4.238761 AGCGCTAGATAACGAATGCTTA 57.761 40.909 8.99 0.00 0.00 3.09
2291 5173 4.859798 AGCGCTAGATAACGAATGCTTATC 59.140 41.667 8.99 0.00 32.73 1.75
2695 5577 2.583441 CCAAGTGAGGTGGCGAGGA 61.583 63.158 0.00 0.00 0.00 3.71
2696 5578 1.374758 CAAGTGAGGTGGCGAGGAC 60.375 63.158 0.00 0.00 0.00 3.85
2723 5610 2.017049 CCCTCCCACGAAATAAGCTTG 58.983 52.381 9.86 0.00 0.00 4.01
2772 5659 0.035317 ATGCCAGACAGACTCGCAAA 59.965 50.000 0.00 0.00 44.83 3.68
2791 5678 5.443170 CGCAAAGTTGTATTTTGTGCTATGC 60.443 40.000 0.00 0.00 38.64 3.14
2792 5679 5.443170 GCAAAGTTGTATTTTGTGCTATGCG 60.443 40.000 0.46 0.00 37.73 4.73
2793 5680 3.758300 AGTTGTATTTTGTGCTATGCGC 58.242 40.909 0.00 0.00 39.75 6.09
2794 5681 2.842208 TGTATTTTGTGCTATGCGCC 57.158 45.000 4.18 0.00 38.39 6.53
2795 5682 2.364632 TGTATTTTGTGCTATGCGCCT 58.635 42.857 4.18 0.00 38.39 5.52
2796 5683 2.097304 TGTATTTTGTGCTATGCGCCTG 59.903 45.455 4.18 0.00 38.39 4.85
2797 5684 1.176527 ATTTTGTGCTATGCGCCTGT 58.823 45.000 4.18 0.00 38.39 4.00
2911 5808 1.885887 TGGTTGTGGCACTTATCTTGC 59.114 47.619 19.83 0.18 39.41 4.01
2960 5857 1.720781 AGGGGCTTTGTGCAAATCTT 58.279 45.000 0.00 0.00 45.15 2.40
2966 5864 3.248363 GGCTTTGTGCAAATCTTGGTTTC 59.752 43.478 0.00 0.00 45.15 2.78
2975 5873 0.323725 ATCTTGGTTTCGCCCTGCAT 60.324 50.000 0.00 0.00 36.04 3.96
2979 5877 1.621992 TGGTTTCGCCCTGCATTTTA 58.378 45.000 0.00 0.00 36.04 1.52
2980 5878 1.964223 TGGTTTCGCCCTGCATTTTAA 59.036 42.857 0.00 0.00 36.04 1.52
2981 5879 2.365617 TGGTTTCGCCCTGCATTTTAAA 59.634 40.909 0.00 0.00 36.04 1.52
3001 5899 5.590530 AAATGTCTGCTTGGTTTGTGTTA 57.409 34.783 0.00 0.00 0.00 2.41
3025 5938 4.578928 GCCGGAAGTACATTGTATGGATTT 59.421 41.667 5.05 0.00 33.60 2.17
3043 5956 3.488778 TTTCATTTGGCATGCTTGGTT 57.511 38.095 18.92 0.00 0.00 3.67
3044 5957 3.488778 TTCATTTGGCATGCTTGGTTT 57.511 38.095 18.92 0.00 0.00 3.27
3045 5958 3.042871 TCATTTGGCATGCTTGGTTTC 57.957 42.857 18.92 0.00 0.00 2.78
3048 5961 0.033781 TTGGCATGCTTGGTTTCTGC 59.966 50.000 18.92 0.00 0.00 4.26
3050 5963 1.580942 GCATGCTTGGTTTCTGCGA 59.419 52.632 11.37 0.00 0.00 5.10
3051 5964 0.039256 GCATGCTTGGTTTCTGCGAA 60.039 50.000 11.37 0.00 0.00 4.70
3052 5965 1.689959 CATGCTTGGTTTCTGCGAAC 58.310 50.000 0.00 0.00 0.00 3.95
3053 5966 1.267806 CATGCTTGGTTTCTGCGAACT 59.732 47.619 0.00 0.00 0.00 3.01
3054 5967 1.388547 TGCTTGGTTTCTGCGAACTT 58.611 45.000 0.00 0.00 0.00 2.66
3055 5968 1.748493 TGCTTGGTTTCTGCGAACTTT 59.252 42.857 0.00 0.00 0.00 2.66
3056 5969 2.119457 GCTTGGTTTCTGCGAACTTTG 58.881 47.619 0.00 0.00 0.00 2.77
3057 5970 2.479560 GCTTGGTTTCTGCGAACTTTGT 60.480 45.455 0.00 0.00 0.00 2.83
3058 5971 3.242936 GCTTGGTTTCTGCGAACTTTGTA 60.243 43.478 0.00 0.00 0.00 2.41
3059 5972 3.955771 TGGTTTCTGCGAACTTTGTAC 57.044 42.857 0.00 0.00 0.00 2.90
3094 6010 0.174389 GATCTCTGAACTGCGCTGGA 59.826 55.000 18.98 5.25 0.00 3.86
3133 6049 1.662122 AGTTGTTGGACGACGAAACAC 59.338 47.619 0.00 4.99 37.57 3.32
3187 6245 5.118510 GCATTGTATTTGCAACTTGTACCAC 59.881 40.000 0.00 0.00 39.90 4.16
3201 6259 8.896744 CAACTTGTACCACATCTTATGATTGAT 58.103 33.333 0.00 0.00 0.00 2.57
3257 6357 4.038282 TGCTATGATGATCAATTGTTGGGC 59.962 41.667 5.13 0.00 0.00 5.36
3289 6393 3.123804 CGCCAGCTCGTTGAACTATTAT 58.876 45.455 0.00 0.00 0.00 1.28
3290 6394 3.555956 CGCCAGCTCGTTGAACTATTATT 59.444 43.478 0.00 0.00 0.00 1.40
3291 6395 4.318121 CGCCAGCTCGTTGAACTATTATTC 60.318 45.833 0.00 0.00 0.00 1.75
3313 6417 5.020132 TCTTTTTCCCTTTTCAACCTGTCA 58.980 37.500 0.00 0.00 0.00 3.58
3321 6425 5.126384 CCCTTTTCAACCTGTCAGTTGTTTA 59.874 40.000 12.12 0.00 45.90 2.01
3344 6448 4.158394 ACATCAAAGCATAAGCCGTTGATT 59.842 37.500 13.76 6.39 46.00 2.57
3462 6642 8.481314 AGTTGTCATTGCTTATGATCTCTCTTA 58.519 33.333 5.57 0.00 44.75 2.10
3572 6753 5.252863 TCAATCAGTCCATTTCTTTCCCCTA 59.747 40.000 0.00 0.00 0.00 3.53
3585 6766 0.343372 TCCCCTATCCCTTCAGCAGT 59.657 55.000 0.00 0.00 0.00 4.40
3605 6786 2.418368 TCAGCTCTCTCTGGTCTCTC 57.582 55.000 0.00 0.00 34.91 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.565896 ACTAGCAAGATTACATGTTTCATTGA 57.434 30.769 2.30 0.00 0.00 2.57
1 2 9.069078 CAACTAGCAAGATTACATGTTTCATTG 57.931 33.333 2.30 6.43 0.00 2.82
2 3 8.796475 ACAACTAGCAAGATTACATGTTTCATT 58.204 29.630 2.30 0.00 0.00 2.57
3 4 8.340618 ACAACTAGCAAGATTACATGTTTCAT 57.659 30.769 2.30 0.00 0.00 2.57
4 5 7.744087 ACAACTAGCAAGATTACATGTTTCA 57.256 32.000 2.30 0.00 0.00 2.69
5 6 7.478667 CGAACAACTAGCAAGATTACATGTTTC 59.521 37.037 2.30 1.66 0.00 2.78
6 7 7.298122 CGAACAACTAGCAAGATTACATGTTT 58.702 34.615 2.30 0.00 0.00 2.83
7 8 6.128282 CCGAACAACTAGCAAGATTACATGTT 60.128 38.462 2.30 0.00 0.00 2.71
8 9 5.351465 CCGAACAACTAGCAAGATTACATGT 59.649 40.000 2.69 2.69 0.00 3.21
9 10 5.351465 ACCGAACAACTAGCAAGATTACATG 59.649 40.000 0.00 0.00 0.00 3.21
10 11 5.488341 ACCGAACAACTAGCAAGATTACAT 58.512 37.500 0.00 0.00 0.00 2.29
11 12 4.890088 ACCGAACAACTAGCAAGATTACA 58.110 39.130 0.00 0.00 0.00 2.41
12 13 5.857822 AACCGAACAACTAGCAAGATTAC 57.142 39.130 0.00 0.00 0.00 1.89
13 14 6.592607 CCTTAACCGAACAACTAGCAAGATTA 59.407 38.462 0.00 0.00 0.00 1.75
14 15 5.411669 CCTTAACCGAACAACTAGCAAGATT 59.588 40.000 0.00 0.00 0.00 2.40
15 16 4.935808 CCTTAACCGAACAACTAGCAAGAT 59.064 41.667 0.00 0.00 0.00 2.40
16 17 4.039488 TCCTTAACCGAACAACTAGCAAGA 59.961 41.667 0.00 0.00 0.00 3.02
17 18 4.312443 TCCTTAACCGAACAACTAGCAAG 58.688 43.478 0.00 0.00 0.00 4.01
18 19 4.339872 TCCTTAACCGAACAACTAGCAA 57.660 40.909 0.00 0.00 0.00 3.91
19 20 4.060205 GTTCCTTAACCGAACAACTAGCA 58.940 43.478 6.00 0.00 39.54 3.49
20 21 4.313282 AGTTCCTTAACCGAACAACTAGC 58.687 43.478 11.42 0.00 41.72 3.42
21 22 4.928020 GGAGTTCCTTAACCGAACAACTAG 59.072 45.833 11.42 0.00 41.72 2.57
22 23 4.344679 TGGAGTTCCTTAACCGAACAACTA 59.655 41.667 11.42 3.33 41.72 2.24
23 24 3.135167 TGGAGTTCCTTAACCGAACAACT 59.865 43.478 11.42 0.00 41.72 3.16
24 25 3.469739 TGGAGTTCCTTAACCGAACAAC 58.530 45.455 11.42 5.92 41.72 3.32
25 26 3.842007 TGGAGTTCCTTAACCGAACAA 57.158 42.857 11.42 0.00 41.72 2.83
26 27 4.360951 AATGGAGTTCCTTAACCGAACA 57.639 40.909 11.42 0.00 41.72 3.18
27 28 4.328169 CGTAATGGAGTTCCTTAACCGAAC 59.672 45.833 0.00 3.45 39.96 3.95
28 29 4.021192 ACGTAATGGAGTTCCTTAACCGAA 60.021 41.667 0.00 0.00 36.15 4.30
29 30 3.511146 ACGTAATGGAGTTCCTTAACCGA 59.489 43.478 0.00 0.00 36.15 4.69
30 31 3.615496 CACGTAATGGAGTTCCTTAACCG 59.385 47.826 0.00 0.42 36.15 4.44
31 32 3.373130 GCACGTAATGGAGTTCCTTAACC 59.627 47.826 0.00 0.00 36.15 2.85
32 33 3.998341 TGCACGTAATGGAGTTCCTTAAC 59.002 43.478 0.00 0.00 36.82 2.01
33 34 4.274602 TGCACGTAATGGAGTTCCTTAA 57.725 40.909 0.00 0.00 36.82 1.85
34 35 3.965379 TGCACGTAATGGAGTTCCTTA 57.035 42.857 0.00 0.00 36.82 2.69
35 36 2.812011 GTTGCACGTAATGGAGTTCCTT 59.188 45.455 0.00 0.00 36.82 3.36
36 37 2.038557 AGTTGCACGTAATGGAGTTCCT 59.961 45.455 0.00 0.00 36.82 3.36
37 38 2.423577 AGTTGCACGTAATGGAGTTCC 58.576 47.619 0.00 0.00 0.00 3.62
38 39 4.326548 GTCTAGTTGCACGTAATGGAGTTC 59.673 45.833 0.00 0.00 0.00 3.01
39 40 4.243270 GTCTAGTTGCACGTAATGGAGTT 58.757 43.478 0.00 0.00 0.00 3.01
40 41 3.368116 GGTCTAGTTGCACGTAATGGAGT 60.368 47.826 0.00 0.00 0.00 3.85
41 42 3.187700 GGTCTAGTTGCACGTAATGGAG 58.812 50.000 0.00 0.00 0.00 3.86
42 43 2.093869 GGGTCTAGTTGCACGTAATGGA 60.094 50.000 0.00 0.00 0.00 3.41
43 44 2.093658 AGGGTCTAGTTGCACGTAATGG 60.094 50.000 0.00 0.00 0.00 3.16
44 45 2.930040 CAGGGTCTAGTTGCACGTAATG 59.070 50.000 0.00 0.00 0.00 1.90
45 46 2.093658 CCAGGGTCTAGTTGCACGTAAT 60.094 50.000 0.00 0.00 0.00 1.89
46 47 1.274167 CCAGGGTCTAGTTGCACGTAA 59.726 52.381 0.00 0.00 0.00 3.18
47 48 0.892755 CCAGGGTCTAGTTGCACGTA 59.107 55.000 0.00 0.00 0.00 3.57
48 49 1.671742 CCAGGGTCTAGTTGCACGT 59.328 57.895 0.00 0.00 0.00 4.49
49 50 1.741770 GCCAGGGTCTAGTTGCACG 60.742 63.158 0.00 0.00 0.00 5.34
50 51 0.035056 ATGCCAGGGTCTAGTTGCAC 60.035 55.000 0.00 0.00 0.00 4.57
51 52 0.035152 CATGCCAGGGTCTAGTTGCA 60.035 55.000 0.00 0.00 0.00 4.08
52 53 0.749454 CCATGCCAGGGTCTAGTTGC 60.749 60.000 0.00 0.00 0.00 4.17
53 54 0.911769 TCCATGCCAGGGTCTAGTTG 59.088 55.000 0.00 0.00 0.00 3.16
54 55 1.898863 ATCCATGCCAGGGTCTAGTT 58.101 50.000 0.00 0.00 0.00 2.24
55 56 2.614259 CTATCCATGCCAGGGTCTAGT 58.386 52.381 0.00 0.00 0.00 2.57
56 57 1.277557 GCTATCCATGCCAGGGTCTAG 59.722 57.143 0.00 0.00 0.00 2.43
57 58 1.352083 GCTATCCATGCCAGGGTCTA 58.648 55.000 0.00 0.00 0.00 2.59
58 59 2.149530 GCTATCCATGCCAGGGTCT 58.850 57.895 0.00 0.00 0.00 3.85
59 60 4.809070 GCTATCCATGCCAGGGTC 57.191 61.111 0.00 0.00 0.00 4.46
67 68 4.704833 CGGGCCGGGCTATCCATG 62.705 72.222 28.80 5.41 34.36 3.66
84 85 4.344865 TTTCGGGCCAGGCTGTCC 62.345 66.667 12.43 10.42 0.00 4.02
85 86 2.747855 CTTTCGGGCCAGGCTGTC 60.748 66.667 12.43 0.00 0.00 3.51
87 88 4.729918 AGCTTTCGGGCCAGGCTG 62.730 66.667 12.43 7.75 31.68 4.85
88 89 4.729918 CAGCTTTCGGGCCAGGCT 62.730 66.667 12.43 1.45 0.00 4.58
89 90 4.722700 TCAGCTTTCGGGCCAGGC 62.723 66.667 4.39 1.26 0.00 4.85
90 91 2.747855 GTCAGCTTTCGGGCCAGG 60.748 66.667 4.39 0.00 0.00 4.45
91 92 2.032528 TGTCAGCTTTCGGGCCAG 59.967 61.111 4.39 0.00 0.00 4.85
92 93 2.281484 GTGTCAGCTTTCGGGCCA 60.281 61.111 4.39 0.00 0.00 5.36
93 94 3.056328 GGTGTCAGCTTTCGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
94 95 3.423154 CGGTGTCAGCTTTCGGGC 61.423 66.667 0.00 0.00 0.00 6.13
95 96 2.742372 CCGGTGTCAGCTTTCGGG 60.742 66.667 0.00 0.00 37.35 5.14
96 97 2.742372 CCCGGTGTCAGCTTTCGG 60.742 66.667 0.00 0.00 40.32 4.30
97 98 3.423154 GCCCGGTGTCAGCTTTCG 61.423 66.667 0.00 0.00 0.00 3.46
98 99 3.056328 GGCCCGGTGTCAGCTTTC 61.056 66.667 0.00 0.00 0.00 2.62
114 115 3.645268 AAGCTAAGCCCAAGCCCGG 62.645 63.158 0.00 0.00 41.02 5.73
115 116 1.250840 AAAAGCTAAGCCCAAGCCCG 61.251 55.000 0.00 0.00 41.02 6.13
116 117 0.976641 AAAAAGCTAAGCCCAAGCCC 59.023 50.000 0.00 0.00 41.02 5.19
117 118 1.402852 CGAAAAAGCTAAGCCCAAGCC 60.403 52.381 0.00 0.00 41.02 4.35
118 119 1.982612 CGAAAAAGCTAAGCCCAAGC 58.017 50.000 0.00 0.00 40.40 4.01
119 120 1.402852 GGCGAAAAAGCTAAGCCCAAG 60.403 52.381 6.58 0.00 41.81 3.61
120 121 0.601057 GGCGAAAAAGCTAAGCCCAA 59.399 50.000 6.58 0.00 41.81 4.12
121 122 2.263153 GGCGAAAAAGCTAAGCCCA 58.737 52.632 6.58 0.00 41.81 5.36
123 124 1.136774 CGGGCGAAAAAGCTAAGCC 59.863 57.895 8.69 8.69 46.51 4.35
124 125 0.519961 TTCGGGCGAAAAAGCTAAGC 59.480 50.000 0.00 0.00 37.29 3.09
125 126 1.465856 GCTTCGGGCGAAAAAGCTAAG 60.466 52.381 0.00 0.00 41.66 2.18
126 127 0.519961 GCTTCGGGCGAAAAAGCTAA 59.480 50.000 0.00 0.00 41.66 3.09
127 128 1.303091 GGCTTCGGGCGAAAAAGCTA 61.303 55.000 6.32 0.00 43.80 3.32
128 129 2.626780 GGCTTCGGGCGAAAAAGCT 61.627 57.895 6.32 0.00 43.80 3.74
129 130 2.126463 GGCTTCGGGCGAAAAAGC 60.126 61.111 0.00 0.00 43.63 3.51
130 131 2.566529 GGGCTTCGGGCGAAAAAG 59.433 61.111 0.00 0.00 42.94 2.27
131 132 3.358707 CGGGCTTCGGGCGAAAAA 61.359 61.111 0.00 0.00 42.94 1.94
140 141 3.188786 CTTTCGAGCCGGGCTTCG 61.189 66.667 24.71 24.95 39.88 3.79
141 142 3.500642 GCTTTCGAGCCGGGCTTC 61.501 66.667 24.71 14.91 39.88 3.86
142 143 4.329545 TGCTTTCGAGCCGGGCTT 62.330 61.111 24.71 6.85 39.88 4.35
145 146 4.735132 TCGTGCTTTCGAGCCGGG 62.735 66.667 2.18 0.00 34.85 5.73
146 147 1.837538 TTTTCGTGCTTTCGAGCCGG 61.838 55.000 0.00 0.00 40.86 6.13
147 148 0.041663 TTTTTCGTGCTTTCGAGCCG 60.042 50.000 0.00 0.21 40.86 5.52
148 149 1.674908 CTTTTTCGTGCTTTCGAGCC 58.325 50.000 0.00 0.00 40.86 4.70
149 150 1.045477 GCTTTTTCGTGCTTTCGAGC 58.955 50.000 0.00 0.00 40.86 5.03
150 151 1.663161 GGGCTTTTTCGTGCTTTCGAG 60.663 52.381 0.00 0.00 40.86 4.04
151 152 0.309612 GGGCTTTTTCGTGCTTTCGA 59.690 50.000 0.00 0.00 38.08 3.71
152 153 0.996727 CGGGCTTTTTCGTGCTTTCG 60.997 55.000 0.00 0.00 0.00 3.46
153 154 0.663269 CCGGGCTTTTTCGTGCTTTC 60.663 55.000 0.00 0.00 0.00 2.62
154 155 1.104577 TCCGGGCTTTTTCGTGCTTT 61.105 50.000 0.00 0.00 0.00 3.51
155 156 1.527380 TCCGGGCTTTTTCGTGCTT 60.527 52.632 0.00 0.00 0.00 3.91
156 157 2.112297 TCCGGGCTTTTTCGTGCT 59.888 55.556 0.00 0.00 0.00 4.40
157 158 1.862602 ATGTCCGGGCTTTTTCGTGC 61.863 55.000 7.97 0.00 0.00 5.34
158 159 0.109781 CATGTCCGGGCTTTTTCGTG 60.110 55.000 7.97 0.00 0.00 4.35
159 160 1.241315 CCATGTCCGGGCTTTTTCGT 61.241 55.000 7.97 0.00 0.00 3.85
160 161 1.506262 CCATGTCCGGGCTTTTTCG 59.494 57.895 7.97 0.00 0.00 3.46
168 169 3.486383 AGTTATTTATGCCATGTCCGGG 58.514 45.455 0.00 0.00 0.00 5.73
169 170 5.305585 AGTAGTTATTTATGCCATGTCCGG 58.694 41.667 0.00 0.00 0.00 5.14
170 171 6.861065 AAGTAGTTATTTATGCCATGTCCG 57.139 37.500 0.00 0.00 0.00 4.79
246 247 9.593134 ACATGAACAGTGCACTTTTAAAATTAA 57.407 25.926 18.94 0.00 0.00 1.40
247 248 9.029243 CACATGAACAGTGCACTTTTAAAATTA 57.971 29.630 18.94 1.15 0.00 1.40
248 249 7.548780 ACACATGAACAGTGCACTTTTAAAATT 59.451 29.630 18.94 2.97 40.59 1.82
249 250 7.041107 ACACATGAACAGTGCACTTTTAAAAT 58.959 30.769 18.94 9.18 40.59 1.82
250 251 6.393990 ACACATGAACAGTGCACTTTTAAAA 58.606 32.000 18.94 7.15 40.59 1.52
251 252 5.960113 ACACATGAACAGTGCACTTTTAAA 58.040 33.333 18.94 9.75 40.59 1.52
252 253 5.574891 ACACATGAACAGTGCACTTTTAA 57.425 34.783 18.94 11.40 40.59 1.52
253 254 5.574891 AACACATGAACAGTGCACTTTTA 57.425 34.783 18.94 12.01 40.59 1.52
254 255 4.454728 AACACATGAACAGTGCACTTTT 57.545 36.364 18.94 18.35 40.59 2.27
255 256 4.423732 GAAACACATGAACAGTGCACTTT 58.576 39.130 18.94 14.79 40.59 2.66
256 257 3.487376 CGAAACACATGAACAGTGCACTT 60.487 43.478 18.94 2.95 40.59 3.16
257 258 2.032054 CGAAACACATGAACAGTGCACT 59.968 45.455 15.25 15.25 40.59 4.40
258 259 2.375110 CGAAACACATGAACAGTGCAC 58.625 47.619 9.40 9.40 40.59 4.57
259 260 1.333308 CCGAAACACATGAACAGTGCA 59.667 47.619 0.00 0.00 40.59 4.57
260 261 1.334960 CCCGAAACACATGAACAGTGC 60.335 52.381 0.00 0.00 40.59 4.40
261 262 1.334960 GCCCGAAACACATGAACAGTG 60.335 52.381 0.00 0.00 42.56 3.66
262 263 0.951558 GCCCGAAACACATGAACAGT 59.048 50.000 0.00 0.00 0.00 3.55
263 264 1.197721 GAGCCCGAAACACATGAACAG 59.802 52.381 0.00 0.00 0.00 3.16
264 265 1.234821 GAGCCCGAAACACATGAACA 58.765 50.000 0.00 0.00 0.00 3.18
265 266 0.165944 CGAGCCCGAAACACATGAAC 59.834 55.000 0.00 0.00 38.22 3.18
266 267 0.953471 CCGAGCCCGAAACACATGAA 60.953 55.000 0.00 0.00 38.22 2.57
267 268 1.375396 CCGAGCCCGAAACACATGA 60.375 57.895 0.00 0.00 38.22 3.07
268 269 2.398554 CCCGAGCCCGAAACACATG 61.399 63.158 0.00 0.00 38.22 3.21
269 270 2.046314 CCCGAGCCCGAAACACAT 60.046 61.111 0.00 0.00 38.22 3.21
270 271 2.119484 ATTCCCGAGCCCGAAACACA 62.119 55.000 0.00 0.00 38.22 3.72
271 272 1.376812 ATTCCCGAGCCCGAAACAC 60.377 57.895 0.00 0.00 38.22 3.32
272 273 1.376683 CATTCCCGAGCCCGAAACA 60.377 57.895 0.00 0.00 38.22 2.83
273 274 2.112815 CCATTCCCGAGCCCGAAAC 61.113 63.158 0.00 0.00 38.22 2.78
274 275 2.270850 CCATTCCCGAGCCCGAAA 59.729 61.111 0.00 0.00 38.22 3.46
275 276 3.792736 CCCATTCCCGAGCCCGAA 61.793 66.667 0.00 0.00 38.22 4.30
276 277 4.789173 TCCCATTCCCGAGCCCGA 62.789 66.667 0.00 0.00 38.22 5.14
277 278 3.120086 AATCCCATTCCCGAGCCCG 62.120 63.158 0.00 0.00 0.00 6.13
278 279 1.529244 CAATCCCATTCCCGAGCCC 60.529 63.158 0.00 0.00 0.00 5.19
279 280 1.529244 CCAATCCCATTCCCGAGCC 60.529 63.158 0.00 0.00 0.00 4.70
280 281 1.529244 CCCAATCCCATTCCCGAGC 60.529 63.158 0.00 0.00 0.00 5.03
281 282 0.109342 CTCCCAATCCCATTCCCGAG 59.891 60.000 0.00 0.00 0.00 4.63
282 283 0.623324 ACTCCCAATCCCATTCCCGA 60.623 55.000 0.00 0.00 0.00 5.14
283 284 0.258774 AACTCCCAATCCCATTCCCG 59.741 55.000 0.00 0.00 0.00 5.14
284 285 2.110578 CAAACTCCCAATCCCATTCCC 58.889 52.381 0.00 0.00 0.00 3.97
285 286 3.026694 CTCAAACTCCCAATCCCATTCC 58.973 50.000 0.00 0.00 0.00 3.01
286 287 3.026694 CCTCAAACTCCCAATCCCATTC 58.973 50.000 0.00 0.00 0.00 2.67
287 288 2.383338 ACCTCAAACTCCCAATCCCATT 59.617 45.455 0.00 0.00 0.00 3.16
288 289 2.003072 ACCTCAAACTCCCAATCCCAT 58.997 47.619 0.00 0.00 0.00 4.00
289 290 1.455822 ACCTCAAACTCCCAATCCCA 58.544 50.000 0.00 0.00 0.00 4.37
290 291 2.171003 CAACCTCAAACTCCCAATCCC 58.829 52.381 0.00 0.00 0.00 3.85
291 292 2.171003 CCAACCTCAAACTCCCAATCC 58.829 52.381 0.00 0.00 0.00 3.01
292 293 2.171003 CCCAACCTCAAACTCCCAATC 58.829 52.381 0.00 0.00 0.00 2.67
293 294 1.827245 GCCCAACCTCAAACTCCCAAT 60.827 52.381 0.00 0.00 0.00 3.16
294 295 0.469144 GCCCAACCTCAAACTCCCAA 60.469 55.000 0.00 0.00 0.00 4.12
295 296 1.152830 GCCCAACCTCAAACTCCCA 59.847 57.895 0.00 0.00 0.00 4.37
296 297 0.178961 AAGCCCAACCTCAAACTCCC 60.179 55.000 0.00 0.00 0.00 4.30
297 298 1.341209 CAAAGCCCAACCTCAAACTCC 59.659 52.381 0.00 0.00 0.00 3.85
298 299 2.031870 ACAAAGCCCAACCTCAAACTC 58.968 47.619 0.00 0.00 0.00 3.01
299 300 2.159179 ACAAAGCCCAACCTCAAACT 57.841 45.000 0.00 0.00 0.00 2.66
300 301 4.368315 CTTTACAAAGCCCAACCTCAAAC 58.632 43.478 0.00 0.00 0.00 2.93
301 302 4.664150 CTTTACAAAGCCCAACCTCAAA 57.336 40.909 0.00 0.00 0.00 2.69
313 314 1.165270 CCGGGTCAGGCTTTACAAAG 58.835 55.000 0.00 0.00 39.03 2.77
314 315 0.766131 TCCGGGTCAGGCTTTACAAA 59.234 50.000 0.00 0.00 0.00 2.83
315 316 0.035739 GTCCGGGTCAGGCTTTACAA 59.964 55.000 0.00 0.00 0.00 2.41
316 317 0.834687 AGTCCGGGTCAGGCTTTACA 60.835 55.000 0.00 0.00 0.00 2.41
317 318 1.136500 CTAGTCCGGGTCAGGCTTTAC 59.864 57.143 0.00 0.00 0.00 2.01
318 319 1.481871 CTAGTCCGGGTCAGGCTTTA 58.518 55.000 0.00 0.00 0.00 1.85
319 320 1.265454 CCTAGTCCGGGTCAGGCTTT 61.265 60.000 0.00 0.00 0.00 3.51
320 321 1.686110 CCTAGTCCGGGTCAGGCTT 60.686 63.158 0.00 0.00 0.00 4.35
321 322 2.042843 CCTAGTCCGGGTCAGGCT 60.043 66.667 0.00 0.00 0.00 4.58
322 323 3.851128 GCCTAGTCCGGGTCAGGC 61.851 72.222 20.50 20.50 46.21 4.85
323 324 3.155167 GGCCTAGTCCGGGTCAGG 61.155 72.222 0.00 6.70 0.00 3.86
324 325 3.155167 GGGCCTAGTCCGGGTCAG 61.155 72.222 0.84 0.00 0.00 3.51
325 326 4.791069 GGGGCCTAGTCCGGGTCA 62.791 72.222 0.84 0.00 0.00 4.02
345 346 1.632018 TAAACCTGGGCATCCTCCGG 61.632 60.000 0.00 0.00 0.00 5.14
346 347 0.463833 GTAAACCTGGGCATCCTCCG 60.464 60.000 0.00 0.00 0.00 4.63
347 348 0.623723 TGTAAACCTGGGCATCCTCC 59.376 55.000 0.00 0.00 0.00 4.30
348 349 2.301346 CATGTAAACCTGGGCATCCTC 58.699 52.381 0.00 0.00 0.00 3.71
349 350 1.686115 GCATGTAAACCTGGGCATCCT 60.686 52.381 0.00 0.00 0.00 3.24
350 351 0.746659 GCATGTAAACCTGGGCATCC 59.253 55.000 0.00 0.00 0.00 3.51
351 352 1.473258 TGCATGTAAACCTGGGCATC 58.527 50.000 0.00 0.00 0.00 3.91
352 353 1.550072 GTTGCATGTAAACCTGGGCAT 59.450 47.619 0.00 0.00 0.00 4.40
353 354 0.965439 GTTGCATGTAAACCTGGGCA 59.035 50.000 0.00 0.00 0.00 5.36
354 355 0.965439 TGTTGCATGTAAACCTGGGC 59.035 50.000 0.00 0.00 0.00 5.36
355 356 2.094078 CCATGTTGCATGTAAACCTGGG 60.094 50.000 20.24 11.87 38.76 4.45
356 357 2.562298 ACCATGTTGCATGTAAACCTGG 59.438 45.455 23.47 23.47 44.36 4.45
357 358 3.940209 ACCATGTTGCATGTAAACCTG 57.060 42.857 0.00 5.00 0.00 4.00
358 359 4.644685 GGATACCATGTTGCATGTAAACCT 59.355 41.667 0.00 0.00 0.00 3.50
359 360 4.644685 AGGATACCATGTTGCATGTAAACC 59.355 41.667 0.00 6.49 37.17 3.27
360 361 5.835113 AGGATACCATGTTGCATGTAAAC 57.165 39.130 0.00 2.17 37.17 2.01
361 362 6.095300 CAGAAGGATACCATGTTGCATGTAAA 59.905 38.462 0.00 0.00 37.17 2.01
362 363 5.589855 CAGAAGGATACCATGTTGCATGTAA 59.410 40.000 8.11 0.00 37.17 2.41
363 364 5.125356 CAGAAGGATACCATGTTGCATGTA 58.875 41.667 8.11 0.00 37.17 2.29
364 365 3.949754 CAGAAGGATACCATGTTGCATGT 59.050 43.478 8.11 0.53 37.17 3.21
365 366 3.949754 ACAGAAGGATACCATGTTGCATG 59.050 43.478 2.38 2.38 37.17 4.06
366 367 3.949754 CACAGAAGGATACCATGTTGCAT 59.050 43.478 0.00 0.00 37.17 3.96
367 368 3.244875 ACACAGAAGGATACCATGTTGCA 60.245 43.478 0.00 0.00 37.17 4.08
368 369 3.127548 CACACAGAAGGATACCATGTTGC 59.872 47.826 0.00 0.00 37.17 4.17
369 370 3.127548 GCACACAGAAGGATACCATGTTG 59.872 47.826 0.00 0.00 37.17 3.33
370 371 3.009473 AGCACACAGAAGGATACCATGTT 59.991 43.478 0.00 0.00 37.17 2.71
371 372 2.573462 AGCACACAGAAGGATACCATGT 59.427 45.455 0.00 0.00 37.17 3.21
372 373 3.272574 AGCACACAGAAGGATACCATG 57.727 47.619 0.00 0.00 37.17 3.66
373 374 4.307032 AAAGCACACAGAAGGATACCAT 57.693 40.909 0.00 0.00 37.17 3.55
374 375 3.788227 AAAGCACACAGAAGGATACCA 57.212 42.857 0.00 0.00 37.17 3.25
375 376 4.082733 GGAAAAAGCACACAGAAGGATACC 60.083 45.833 0.00 0.00 37.17 2.73
376 377 4.082733 GGGAAAAAGCACACAGAAGGATAC 60.083 45.833 0.00 0.00 0.00 2.24
377 378 4.079253 GGGAAAAAGCACACAGAAGGATA 58.921 43.478 0.00 0.00 0.00 2.59
378 379 2.893489 GGGAAAAAGCACACAGAAGGAT 59.107 45.455 0.00 0.00 0.00 3.24
379 380 2.091885 AGGGAAAAAGCACACAGAAGGA 60.092 45.455 0.00 0.00 0.00 3.36
380 381 2.310538 AGGGAAAAAGCACACAGAAGG 58.689 47.619 0.00 0.00 0.00 3.46
381 382 4.114794 CAAAGGGAAAAAGCACACAGAAG 58.885 43.478 0.00 0.00 0.00 2.85
382 383 3.513515 ACAAAGGGAAAAAGCACACAGAA 59.486 39.130 0.00 0.00 0.00 3.02
383 384 3.096092 ACAAAGGGAAAAAGCACACAGA 58.904 40.909 0.00 0.00 0.00 3.41
384 385 3.525268 ACAAAGGGAAAAAGCACACAG 57.475 42.857 0.00 0.00 0.00 3.66
385 386 3.181480 GCTACAAAGGGAAAAAGCACACA 60.181 43.478 0.00 0.00 0.00 3.72
386 387 3.181480 TGCTACAAAGGGAAAAAGCACAC 60.181 43.478 0.00 0.00 35.20 3.82
387 388 3.027412 TGCTACAAAGGGAAAAAGCACA 58.973 40.909 0.00 0.00 35.20 4.57
388 389 3.726291 TGCTACAAAGGGAAAAAGCAC 57.274 42.857 0.00 0.00 35.20 4.40
389 390 3.027412 TGTGCTACAAAGGGAAAAAGCA 58.973 40.909 0.00 0.00 37.62 3.91
390 391 3.068165 AGTGTGCTACAAAGGGAAAAAGC 59.932 43.478 0.00 0.00 0.00 3.51
391 392 4.554723 CGAGTGTGCTACAAAGGGAAAAAG 60.555 45.833 0.00 0.00 0.00 2.27
392 393 3.314080 CGAGTGTGCTACAAAGGGAAAAA 59.686 43.478 0.00 0.00 0.00 1.94
393 394 2.875933 CGAGTGTGCTACAAAGGGAAAA 59.124 45.455 0.00 0.00 0.00 2.29
394 395 2.489971 CGAGTGTGCTACAAAGGGAAA 58.510 47.619 0.00 0.00 0.00 3.13
395 396 1.876416 GCGAGTGTGCTACAAAGGGAA 60.876 52.381 0.00 0.00 0.00 3.97
396 397 0.320421 GCGAGTGTGCTACAAAGGGA 60.320 55.000 0.00 0.00 0.00 4.20
397 398 1.298859 GGCGAGTGTGCTACAAAGGG 61.299 60.000 0.00 0.00 34.52 3.95
398 399 1.298859 GGGCGAGTGTGCTACAAAGG 61.299 60.000 0.00 0.00 34.52 3.11
399 400 0.320771 AGGGCGAGTGTGCTACAAAG 60.321 55.000 0.00 0.00 34.52 2.77
400 401 0.107831 AAGGGCGAGTGTGCTACAAA 59.892 50.000 0.00 0.00 34.52 2.83
401 402 0.320421 GAAGGGCGAGTGTGCTACAA 60.320 55.000 0.00 0.00 34.52 2.41
402 403 1.185618 AGAAGGGCGAGTGTGCTACA 61.186 55.000 0.00 0.00 34.52 2.74
403 404 0.037232 AAGAAGGGCGAGTGTGCTAC 60.037 55.000 0.00 0.00 34.52 3.58
404 405 0.685097 AAAGAAGGGCGAGTGTGCTA 59.315 50.000 0.00 0.00 34.52 3.49
405 406 0.179018 AAAAGAAGGGCGAGTGTGCT 60.179 50.000 0.00 0.00 34.52 4.40
406 407 0.668535 AAAAAGAAGGGCGAGTGTGC 59.331 50.000 0.00 0.00 0.00 4.57
422 423 4.289672 AGGATGTAGAGAGCCAAGGAAAAA 59.710 41.667 0.00 0.00 0.00 1.94
423 424 3.846588 AGGATGTAGAGAGCCAAGGAAAA 59.153 43.478 0.00 0.00 0.00 2.29
424 425 3.454858 AGGATGTAGAGAGCCAAGGAAA 58.545 45.455 0.00 0.00 0.00 3.13
425 426 3.121929 AGGATGTAGAGAGCCAAGGAA 57.878 47.619 0.00 0.00 0.00 3.36
426 427 2.856760 AGGATGTAGAGAGCCAAGGA 57.143 50.000 0.00 0.00 0.00 3.36
427 428 3.922171 AAAGGATGTAGAGAGCCAAGG 57.078 47.619 0.00 0.00 0.00 3.61
428 429 4.651503 TCCTAAAGGATGTAGAGAGCCAAG 59.348 45.833 0.00 0.00 39.78 3.61
429 430 4.620723 TCCTAAAGGATGTAGAGAGCCAA 58.379 43.478 0.00 0.00 39.78 4.52
430 431 4.265856 TCCTAAAGGATGTAGAGAGCCA 57.734 45.455 0.00 0.00 39.78 4.75
443 444 5.808366 TGGTGTATAGAGCATCCTAAAGG 57.192 43.478 0.00 0.00 33.66 3.11
444 445 8.367911 TGTTATGGTGTATAGAGCATCCTAAAG 58.632 37.037 16.91 0.00 35.67 1.85
445 446 8.148351 GTGTTATGGTGTATAGAGCATCCTAAA 58.852 37.037 16.91 4.66 35.67 1.85
446 447 7.509318 AGTGTTATGGTGTATAGAGCATCCTAA 59.491 37.037 16.91 4.99 35.67 2.69
447 448 7.010771 AGTGTTATGGTGTATAGAGCATCCTA 58.989 38.462 16.91 3.52 35.67 2.94
448 449 5.841237 AGTGTTATGGTGTATAGAGCATCCT 59.159 40.000 16.91 7.49 35.67 3.24
449 450 6.102897 AGTGTTATGGTGTATAGAGCATCC 57.897 41.667 16.91 10.29 35.67 3.51
450 451 8.438676 AAAAGTGTTATGGTGTATAGAGCATC 57.561 34.615 16.91 5.94 35.67 3.91
451 452 8.807948 AAAAAGTGTTATGGTGTATAGAGCAT 57.192 30.769 17.46 17.46 37.76 3.79
479 480 9.071276 CCTATTATTTAGCACCTCAACAATGAT 57.929 33.333 0.00 0.00 34.37 2.45
480 481 7.502226 CCCTATTATTTAGCACCTCAACAATGA 59.498 37.037 0.00 0.00 0.00 2.57
481 482 7.502226 TCCCTATTATTTAGCACCTCAACAATG 59.498 37.037 0.00 0.00 0.00 2.82
482 483 7.502561 GTCCCTATTATTTAGCACCTCAACAAT 59.497 37.037 0.00 0.00 0.00 2.71
483 484 6.826741 GTCCCTATTATTTAGCACCTCAACAA 59.173 38.462 0.00 0.00 0.00 2.83
484 485 6.069905 TGTCCCTATTATTTAGCACCTCAACA 60.070 38.462 0.00 0.00 0.00 3.33
485 486 6.354130 TGTCCCTATTATTTAGCACCTCAAC 58.646 40.000 0.00 0.00 0.00 3.18
486 487 6.569127 TGTCCCTATTATTTAGCACCTCAA 57.431 37.500 0.00 0.00 0.00 3.02
487 488 6.354130 GTTGTCCCTATTATTTAGCACCTCA 58.646 40.000 0.00 0.00 0.00 3.86
488 489 5.763698 GGTTGTCCCTATTATTTAGCACCTC 59.236 44.000 0.00 0.00 0.00 3.85
489 490 5.432060 AGGTTGTCCCTATTATTTAGCACCT 59.568 40.000 0.00 0.00 43.87 4.00
490 491 5.691896 AGGTTGTCCCTATTATTTAGCACC 58.308 41.667 0.00 0.00 43.87 5.01
491 492 7.338449 TGAAAGGTTGTCCCTATTATTTAGCAC 59.662 37.037 0.00 0.00 45.47 4.40
492 493 7.406916 TGAAAGGTTGTCCCTATTATTTAGCA 58.593 34.615 0.00 0.00 45.47 3.49
493 494 7.875327 TGAAAGGTTGTCCCTATTATTTAGC 57.125 36.000 0.00 0.00 45.47 3.09
494 495 9.627123 TCATGAAAGGTTGTCCCTATTATTTAG 57.373 33.333 0.00 0.00 45.47 1.85
495 496 9.403583 GTCATGAAAGGTTGTCCCTATTATTTA 57.596 33.333 0.00 0.00 45.47 1.40
496 497 7.342026 GGTCATGAAAGGTTGTCCCTATTATTT 59.658 37.037 0.00 0.00 45.47 1.40
497 498 6.833933 GGTCATGAAAGGTTGTCCCTATTATT 59.166 38.462 0.00 0.00 45.47 1.40
498 499 6.069088 TGGTCATGAAAGGTTGTCCCTATTAT 60.069 38.462 0.00 0.00 45.47 1.28
499 500 5.251932 TGGTCATGAAAGGTTGTCCCTATTA 59.748 40.000 0.00 0.00 45.47 0.98
500 501 4.044065 TGGTCATGAAAGGTTGTCCCTATT 59.956 41.667 0.00 0.00 45.47 1.73
501 502 3.591527 TGGTCATGAAAGGTTGTCCCTAT 59.408 43.478 0.00 0.00 45.47 2.57
502 503 2.983192 TGGTCATGAAAGGTTGTCCCTA 59.017 45.455 0.00 0.00 45.47 3.53
503 504 7.295089 ATGATGGTCATGAAAGGTTGTCCCT 62.295 44.000 0.00 0.00 39.75 4.20
504 505 2.286365 TGGTCATGAAAGGTTGTCCC 57.714 50.000 0.00 0.00 0.00 4.46
505 506 3.420893 TGATGGTCATGAAAGGTTGTCC 58.579 45.455 0.00 0.00 0.00 4.02
517 518 6.286758 GTGAGAGTTGATACATGATGGTCAT 58.713 40.000 0.00 0.00 37.65 3.06
518 519 5.395657 GGTGAGAGTTGATACATGATGGTCA 60.396 44.000 0.00 0.00 0.00 4.02
519 520 5.053145 GGTGAGAGTTGATACATGATGGTC 58.947 45.833 0.00 0.00 0.00 4.02
520 521 4.471025 TGGTGAGAGTTGATACATGATGGT 59.529 41.667 0.00 0.00 0.00 3.55
521 522 5.027293 TGGTGAGAGTTGATACATGATGG 57.973 43.478 0.00 0.00 0.00 3.51
522 523 5.469084 CCATGGTGAGAGTTGATACATGATG 59.531 44.000 2.57 0.00 37.10 3.07
523 524 5.618236 CCATGGTGAGAGTTGATACATGAT 58.382 41.667 2.57 0.00 37.10 2.45
524 525 4.684214 GCCATGGTGAGAGTTGATACATGA 60.684 45.833 14.67 0.00 37.10 3.07
525 526 3.562973 GCCATGGTGAGAGTTGATACATG 59.437 47.826 14.67 0.00 35.31 3.21
526 527 3.742327 CGCCATGGTGAGAGTTGATACAT 60.742 47.826 21.19 0.00 0.00 2.29
527 528 2.418609 CGCCATGGTGAGAGTTGATACA 60.419 50.000 21.19 0.00 0.00 2.29
528 529 2.205074 CGCCATGGTGAGAGTTGATAC 58.795 52.381 21.19 0.00 0.00 2.24
529 530 1.138859 CCGCCATGGTGAGAGTTGATA 59.861 52.381 27.12 0.00 0.00 2.15
530 531 0.107508 CCGCCATGGTGAGAGTTGAT 60.108 55.000 27.12 0.00 0.00 2.57
531 532 1.296392 CCGCCATGGTGAGAGTTGA 59.704 57.895 27.12 0.00 0.00 3.18
532 533 2.401766 GCCGCCATGGTGAGAGTTG 61.402 63.158 27.12 9.66 41.21 3.16
533 534 2.045926 GCCGCCATGGTGAGAGTT 60.046 61.111 27.12 0.00 41.21 3.01
534 535 4.101448 GGCCGCCATGGTGAGAGT 62.101 66.667 27.12 0.00 41.21 3.24
553 554 3.523606 AGTAATGAGAGCTGAGTGCAG 57.476 47.619 0.00 0.00 45.94 4.41
554 555 4.464244 ACTTAGTAATGAGAGCTGAGTGCA 59.536 41.667 0.00 0.00 45.94 4.57
555 556 5.004922 ACTTAGTAATGAGAGCTGAGTGC 57.995 43.478 0.00 0.00 43.29 4.40
556 557 6.449635 AGACTTAGTAATGAGAGCTGAGTG 57.550 41.667 0.00 0.00 30.79 3.51
557 558 7.475137 AAAGACTTAGTAATGAGAGCTGAGT 57.525 36.000 0.00 0.00 32.84 3.41
558 559 8.770438 AAAAAGACTTAGTAATGAGAGCTGAG 57.230 34.615 0.00 0.00 0.00 3.35
559 560 8.589338 AGAAAAAGACTTAGTAATGAGAGCTGA 58.411 33.333 0.00 0.00 0.00 4.26
560 561 8.770438 AGAAAAAGACTTAGTAATGAGAGCTG 57.230 34.615 0.00 0.00 0.00 4.24
561 562 9.430623 GAAGAAAAAGACTTAGTAATGAGAGCT 57.569 33.333 0.00 0.00 0.00 4.09
562 563 9.430623 AGAAGAAAAAGACTTAGTAATGAGAGC 57.569 33.333 0.00 0.00 0.00 4.09
569 570 8.548721 CGCAAGAAGAAGAAAAAGACTTAGTAA 58.451 33.333 0.00 0.00 43.02 2.24
570 571 8.073355 CGCAAGAAGAAGAAAAAGACTTAGTA 57.927 34.615 0.00 0.00 43.02 1.82
571 572 6.949449 CGCAAGAAGAAGAAAAAGACTTAGT 58.051 36.000 0.00 0.00 43.02 2.24
590 591 5.521735 AGACTTAGCAATGAGTATTCGCAAG 59.478 40.000 0.00 0.00 0.00 4.01
591 592 5.419542 AGACTTAGCAATGAGTATTCGCAA 58.580 37.500 0.00 0.00 0.00 4.85
592 593 5.011090 AGACTTAGCAATGAGTATTCGCA 57.989 39.130 0.00 0.00 0.00 5.10
593 594 5.975410 AAGACTTAGCAATGAGTATTCGC 57.025 39.130 0.00 0.00 0.00 4.70
625 626 9.745880 GAGGTATCTTTTGTTTGAGTATATCGA 57.254 33.333 0.00 0.00 0.00 3.59
630 631 9.220767 GTTCTGAGGTATCTTTTGTTTGAGTAT 57.779 33.333 0.00 0.00 0.00 2.12
631 632 8.429641 AGTTCTGAGGTATCTTTTGTTTGAGTA 58.570 33.333 0.00 0.00 0.00 2.59
632 633 7.283329 AGTTCTGAGGTATCTTTTGTTTGAGT 58.717 34.615 0.00 0.00 0.00 3.41
633 634 7.442364 TGAGTTCTGAGGTATCTTTTGTTTGAG 59.558 37.037 0.00 0.00 0.00 3.02
635 636 7.496529 TGAGTTCTGAGGTATCTTTTGTTTG 57.503 36.000 0.00 0.00 0.00 2.93
636 637 8.571336 CATTGAGTTCTGAGGTATCTTTTGTTT 58.429 33.333 0.00 0.00 0.00 2.83
637 638 7.175641 CCATTGAGTTCTGAGGTATCTTTTGTT 59.824 37.037 0.00 0.00 0.00 2.83
638 639 6.656693 CCATTGAGTTCTGAGGTATCTTTTGT 59.343 38.462 0.00 0.00 0.00 2.83
646 651 2.501723 GGCTCCATTGAGTTCTGAGGTA 59.498 50.000 0.00 0.00 40.95 3.08
653 658 9.646427 CTATATACTTTAGGCTCCATTGAGTTC 57.354 37.037 0.00 0.00 40.95 3.01
688 693 6.968263 TTCCATGTTTATTCTTGTGTGGAA 57.032 33.333 0.00 0.00 40.92 3.53
719 728 2.287644 CCATTCATACTCGATTGCGCAA 59.712 45.455 27.24 27.24 37.46 4.85
723 732 3.876914 TGGTTCCATTCATACTCGATTGC 59.123 43.478 0.00 0.00 0.00 3.56
745 754 3.723681 TCCTTGGATCCTTGGCAATCTAT 59.276 43.478 14.23 0.00 0.00 1.98
776 785 4.552883 TCTTTTTCCCTTCCTTTTCCCT 57.447 40.909 0.00 0.00 0.00 4.20
779 788 6.884832 TCCTTTTCTTTTTCCCTTCCTTTTC 58.115 36.000 0.00 0.00 0.00 2.29
782 791 6.126768 CCTTTCCTTTTCTTTTTCCCTTCCTT 60.127 38.462 0.00 0.00 0.00 3.36
783 792 5.366768 CCTTTCCTTTTCTTTTTCCCTTCCT 59.633 40.000 0.00 0.00 0.00 3.36
784 793 5.454755 CCCTTTCCTTTTCTTTTTCCCTTCC 60.455 44.000 0.00 0.00 0.00 3.46
785 794 5.454755 CCCCTTTCCTTTTCTTTTTCCCTTC 60.455 44.000 0.00 0.00 0.00 3.46
786 795 4.412199 CCCCTTTCCTTTTCTTTTTCCCTT 59.588 41.667 0.00 0.00 0.00 3.95
787 796 3.973973 CCCCTTTCCTTTTCTTTTTCCCT 59.026 43.478 0.00 0.00 0.00 4.20
791 800 4.141801 CGGTTCCCCTTTCCTTTTCTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
834 843 1.675641 CGAGGGGGAAGGTTTGCTG 60.676 63.158 0.00 0.00 0.00 4.41
861 871 2.285977 GCTGGGTTTTATAGACCGGTG 58.714 52.381 14.63 0.00 38.08 4.94
863 873 1.476291 GGGCTGGGTTTTATAGACCGG 60.476 57.143 0.00 0.00 38.08 5.28
964 977 3.843240 GCTTCGAGAAGGTGCGCG 61.843 66.667 13.92 0.00 38.80 6.86
981 994 4.179599 GGGGAGGGAGGGAGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
982 995 4.179599 GGGGGAGGGAGGGAGGAG 62.180 77.778 0.00 0.00 0.00 3.69
984 997 3.795924 ATGGGGGAGGGAGGGAGG 61.796 72.222 0.00 0.00 0.00 4.30
985 998 2.449322 CATGGGGGAGGGAGGGAG 60.449 72.222 0.00 0.00 0.00 4.30
986 999 4.122670 CCATGGGGGAGGGAGGGA 62.123 72.222 2.85 0.00 40.01 4.20
1157 1692 0.309302 CACCGACTGGATCTAGAGCG 59.691 60.000 13.73 14.63 39.21 5.03
1169 1704 2.224159 AACCCAGGCATCACCGACT 61.224 57.895 0.00 0.00 46.52 4.18
1275 2357 1.407437 CCTTAACAGAGCAATCCGCCT 60.407 52.381 0.00 0.00 44.04 5.52
1409 3315 9.687210 CTGATTCTCAATCTCTCTCATTAGAAG 57.313 37.037 0.00 0.00 38.72 2.85
1415 3321 6.156602 ACAACCTGATTCTCAATCTCTCTCAT 59.843 38.462 0.00 0.00 38.72 2.90
1425 3331 6.204688 GTGTATGACAACAACCTGATTCTCAA 59.795 38.462 0.00 0.00 0.00 3.02
1518 3733 3.866651 AGTACATCACAGCCAGATCAAC 58.133 45.455 0.00 0.00 0.00 3.18
1519 3734 4.711846 ACTAGTACATCACAGCCAGATCAA 59.288 41.667 0.00 0.00 0.00 2.57
1561 3776 5.353394 ACTGTCACCAAAAAGTCTCACTA 57.647 39.130 0.00 0.00 0.00 2.74
1562 3777 4.222124 ACTGTCACCAAAAAGTCTCACT 57.778 40.909 0.00 0.00 0.00 3.41
1563 3778 4.272748 GGTACTGTCACCAAAAAGTCTCAC 59.727 45.833 0.00 0.00 38.55 3.51
1564 3779 4.080807 TGGTACTGTCACCAAAAAGTCTCA 60.081 41.667 6.65 0.00 45.65 3.27
1621 3883 6.829811 ACTACACAGTTAAGACTAGATCTCCC 59.170 42.308 0.00 0.00 36.27 4.30
1656 3918 6.749923 AAGAGGAATCTACAAATCAAGTGC 57.250 37.500 0.00 0.00 0.00 4.40
1687 3949 3.190079 TGCAGAAATGAGCGACTATGAC 58.810 45.455 0.00 0.00 0.00 3.06
1689 3951 3.805971 TGATGCAGAAATGAGCGACTATG 59.194 43.478 0.00 0.00 0.00 2.23
1690 3952 4.063998 TGATGCAGAAATGAGCGACTAT 57.936 40.909 0.00 0.00 0.00 2.12
1692 3954 2.391616 TGATGCAGAAATGAGCGACT 57.608 45.000 0.00 0.00 0.00 4.18
1695 3957 7.358066 ACTATTAAATGATGCAGAAATGAGCG 58.642 34.615 0.00 0.00 0.00 5.03
1994 4753 8.017373 ACGTTCATTTCAACATACTGAATTCTG 58.983 33.333 10.51 10.51 35.31 3.02
2114 4965 1.573829 ATGTTGGGCACTTACACGCG 61.574 55.000 3.53 3.53 0.00 6.01
2167 5018 6.702329 ACTGAGTTGGTTCTATTGTCCTAAG 58.298 40.000 0.00 0.00 0.00 2.18
2179 5030 2.554032 CAATGTGGGACTGAGTTGGTTC 59.446 50.000 0.00 0.00 0.00 3.62
2180 5031 2.586425 CAATGTGGGACTGAGTTGGTT 58.414 47.619 0.00 0.00 0.00 3.67
2182 5033 1.538047 CCAATGTGGGACTGAGTTGG 58.462 55.000 0.00 0.00 32.67 3.77
2193 5044 5.708948 CCGCATATAAAATACCCAATGTGG 58.291 41.667 0.00 0.00 38.29 4.17
2289 5171 3.379372 CCTGCAGGAAATTCAACATCGAT 59.621 43.478 29.88 0.00 37.39 3.59
2291 5173 2.489329 ACCTGCAGGAAATTCAACATCG 59.511 45.455 39.19 7.55 38.94 3.84
2723 5610 5.047802 TCCAATCCACTTGAGAGCAAATTTC 60.048 40.000 0.00 0.00 36.97 2.17
2911 5808 4.386867 TGATAAGACGAAGCCTAACAGG 57.613 45.455 0.00 0.00 38.80 4.00
2912 5809 4.747108 CCATGATAAGACGAAGCCTAACAG 59.253 45.833 0.00 0.00 0.00 3.16
2913 5810 4.404394 TCCATGATAAGACGAAGCCTAACA 59.596 41.667 0.00 0.00 0.00 2.41
2914 5811 4.945246 TCCATGATAAGACGAAGCCTAAC 58.055 43.478 0.00 0.00 0.00 2.34
2915 5812 5.607939 TTCCATGATAAGACGAAGCCTAA 57.392 39.130 0.00 0.00 0.00 2.69
2916 5813 5.808366 ATTCCATGATAAGACGAAGCCTA 57.192 39.130 0.00 0.00 0.00 3.93
2917 5814 4.696479 ATTCCATGATAAGACGAAGCCT 57.304 40.909 0.00 0.00 0.00 4.58
2918 5815 5.757850 AAATTCCATGATAAGACGAAGCC 57.242 39.130 0.00 0.00 0.00 4.35
2919 5816 6.073003 CCCTAAATTCCATGATAAGACGAAGC 60.073 42.308 0.00 0.00 0.00 3.86
2920 5817 6.428159 CCCCTAAATTCCATGATAAGACGAAG 59.572 42.308 0.00 0.00 0.00 3.79
2960 5857 1.621992 TAAAATGCAGGGCGAAACCA 58.378 45.000 0.00 0.00 42.05 3.67
2966 5864 3.181397 CAGACATTTAAAATGCAGGGCG 58.819 45.455 0.00 0.00 0.00 6.13
2975 5873 6.402222 ACACAAACCAAGCAGACATTTAAAA 58.598 32.000 0.00 0.00 0.00 1.52
2979 5877 4.470334 AACACAAACCAAGCAGACATTT 57.530 36.364 0.00 0.00 0.00 2.32
2980 5878 4.499696 GCTAACACAAACCAAGCAGACATT 60.500 41.667 0.00 0.00 33.38 2.71
2981 5879 3.004734 GCTAACACAAACCAAGCAGACAT 59.995 43.478 0.00 0.00 33.38 3.06
3001 5899 2.769663 TCCATACAATGTACTTCCGGCT 59.230 45.455 0.00 0.00 0.00 5.52
3025 5938 2.633967 AGAAACCAAGCATGCCAAATGA 59.366 40.909 15.66 0.00 0.00 2.57
3043 5956 4.260051 CGAAGTTGTACAAAGTTCGCAGAA 60.260 41.667 27.86 0.00 45.90 3.02
3044 5957 3.244345 CGAAGTTGTACAAAGTTCGCAGA 59.756 43.478 27.86 0.00 34.47 4.26
3045 5958 3.531982 CGAAGTTGTACAAAGTTCGCAG 58.468 45.455 27.86 12.73 34.47 5.18
3048 5961 3.302870 CCACCGAAGTTGTACAAAGTTCG 60.303 47.826 29.98 29.98 38.09 3.95
3050 5963 3.613030 ACCACCGAAGTTGTACAAAGTT 58.387 40.909 10.51 7.02 0.00 2.66
3051 5964 3.271055 ACCACCGAAGTTGTACAAAGT 57.729 42.857 10.51 0.39 0.00 2.66
3052 5965 4.210537 CACTACCACCGAAGTTGTACAAAG 59.789 45.833 10.51 2.52 0.00 2.77
3053 5966 4.121317 CACTACCACCGAAGTTGTACAAA 58.879 43.478 10.51 0.00 0.00 2.83
3054 5967 3.384146 TCACTACCACCGAAGTTGTACAA 59.616 43.478 3.59 3.59 0.00 2.41
3055 5968 2.957680 TCACTACCACCGAAGTTGTACA 59.042 45.455 0.00 0.00 0.00 2.90
3056 5969 3.648339 TCACTACCACCGAAGTTGTAC 57.352 47.619 0.00 0.00 0.00 2.90
3057 5970 4.084287 AGATCACTACCACCGAAGTTGTA 58.916 43.478 0.00 0.00 0.00 2.41
3058 5971 2.897969 AGATCACTACCACCGAAGTTGT 59.102 45.455 0.00 0.00 0.00 3.32
3059 5972 3.193691 AGAGATCACTACCACCGAAGTTG 59.806 47.826 0.00 0.00 0.00 3.16
3094 6010 1.812571 CTGTACCAAGGCGAATTTGCT 59.187 47.619 17.19 0.00 34.52 3.91
3133 6049 1.487482 TTCGCTGTCGACTTGAGTTG 58.513 50.000 17.92 3.62 45.43 3.16
3187 6245 9.177304 CATTTGGTTTCGATCAATCATAAGATG 57.823 33.333 0.00 0.00 33.90 2.90
3257 6357 4.424566 GCTGGCGCCAACCATGTG 62.425 66.667 32.09 17.97 39.54 3.21
3289 6393 5.482175 TGACAGGTTGAAAAGGGAAAAAGAA 59.518 36.000 0.00 0.00 0.00 2.52
3290 6394 5.020132 TGACAGGTTGAAAAGGGAAAAAGA 58.980 37.500 0.00 0.00 0.00 2.52
3291 6395 5.105351 ACTGACAGGTTGAAAAGGGAAAAAG 60.105 40.000 7.51 0.00 0.00 2.27
3313 6417 6.389906 GGCTTATGCTTTGATGTAAACAACT 58.610 36.000 0.13 0.00 39.59 3.16
3321 6425 3.081061 TCAACGGCTTATGCTTTGATGT 58.919 40.909 11.55 0.00 36.76 3.06
3369 6493 6.058833 TGCCGATTTTAGCATCTTTATGGTA 58.941 36.000 0.00 0.00 41.96 3.25
3378 6502 3.623060 TGAACTCTGCCGATTTTAGCATC 59.377 43.478 0.00 0.00 38.56 3.91
3383 6507 3.120338 CGCTTTGAACTCTGCCGATTTTA 60.120 43.478 0.00 0.00 0.00 1.52
3389 6513 0.798776 AATCGCTTTGAACTCTGCCG 59.201 50.000 0.00 0.00 0.00 5.69
3504 6684 1.136336 GTTCGTCACGATGAAGCAACC 60.136 52.381 0.00 0.00 37.04 3.77
3572 6753 0.990374 AGCTGAACTGCTGAAGGGAT 59.010 50.000 5.47 0.00 42.33 3.85
3585 6766 2.620367 GGAGAGACCAGAGAGAGCTGAA 60.620 54.545 0.00 0.00 38.14 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.