Multiple sequence alignment - TraesCS1D01G307600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G307600 chr1D 100.000 3227 0 0 1 3227 403941844 403938618 0.000000e+00 5960
1 TraesCS1D01G307600 chr1D 95.072 629 21 5 31 651 62437083 62437709 0.000000e+00 981
2 TraesCS1D01G307600 chr1A 96.088 1508 48 5 888 2384 499617787 499616280 0.000000e+00 2447
3 TraesCS1D01G307600 chr1A 92.545 550 39 1 2680 3227 449755580 449756129 0.000000e+00 787
4 TraesCS1D01G307600 chr1A 89.474 247 19 5 2417 2657 499616291 499616046 4.040000e-79 305
5 TraesCS1D01G307600 chr1B 96.570 1341 43 1 894 2231 543429649 543428309 0.000000e+00 2218
6 TraesCS1D01G307600 chr2D 94.164 634 22 9 31 652 564120262 564119632 0.000000e+00 952
7 TraesCS1D01G307600 chr2D 94.277 629 21 9 31 647 11535694 11535069 0.000000e+00 948
8 TraesCS1D01G307600 chr2D 92.744 634 30 11 31 652 8641939 8642568 0.000000e+00 902
9 TraesCS1D01G307600 chr2D 96.147 545 19 1 2685 3227 460331019 460331563 0.000000e+00 889
10 TraesCS1D01G307600 chr2D 94.946 554 24 3 2676 3227 386723627 386724178 0.000000e+00 865
11 TraesCS1D01G307600 chr2D 87.363 546 66 2 2684 3226 236145387 236144842 9.830000e-175 623
12 TraesCS1D01G307600 chr4D 93.701 635 21 8 31 652 69136397 69137025 0.000000e+00 933
13 TraesCS1D01G307600 chr7A 93.641 629 21 12 32 653 549723848 549724464 0.000000e+00 922
14 TraesCS1D01G307600 chr7A 83.212 137 19 3 2448 2581 263716121 263715986 4.370000e-24 122
15 TraesCS1D01G307600 chr6D 93.196 632 29 7 31 649 354520361 354520991 0.000000e+00 917
16 TraesCS1D01G307600 chr4A 92.563 632 34 8 31 651 435036296 435035667 0.000000e+00 894
17 TraesCS1D01G307600 chr6B 92.552 631 32 9 31 649 695833633 695834260 0.000000e+00 891
18 TraesCS1D01G307600 chr2B 94.756 553 26 2 2677 3227 458085517 458086068 0.000000e+00 857
19 TraesCS1D01G307600 chr2B 83.544 79 13 0 2512 2590 490115293 490115371 1.240000e-09 75
20 TraesCS1D01G307600 chr7D 91.392 546 43 3 2685 3227 284670177 284669633 0.000000e+00 745
21 TraesCS1D01G307600 chr7D 80.000 165 30 2 2448 2610 246807661 246807498 5.660000e-23 119
22 TraesCS1D01G307600 chr2A 91.304 529 42 4 2686 3212 483448103 483447577 0.000000e+00 719
23 TraesCS1D01G307600 chr3B 90.110 546 48 5 2685 3226 477375170 477374627 0.000000e+00 704
24 TraesCS1D01G307600 chr3B 87.037 540 66 4 2684 3220 697142810 697143348 9.900000e-170 606
25 TraesCS1D01G307600 chr5D 80.235 511 77 16 1040 1532 384480365 384479861 2.370000e-96 363
26 TraesCS1D01G307600 chr5B 80.235 511 77 16 1040 1532 461305495 461304991 2.370000e-96 363
27 TraesCS1D01G307600 chr5B 80.040 506 75 23 1038 1527 461545929 461545434 5.120000e-93 351
28 TraesCS1D01G307600 chr5B 77.210 509 90 21 1040 1532 461491875 461491377 1.140000e-69 274
29 TraesCS1D01G307600 chr5A 79.764 509 80 12 1040 1532 485388322 485387821 6.630000e-92 348
30 TraesCS1D01G307600 chr5A 79.290 507 70 25 1035 1527 485469725 485469240 4.020000e-84 322
31 TraesCS1D01G307600 chr7B 82.581 155 25 2 2449 2602 223173235 223173082 5.620000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G307600 chr1D 403938618 403941844 3226 True 5960 5960 100.000 1 3227 1 chr1D.!!$R1 3226
1 TraesCS1D01G307600 chr1D 62437083 62437709 626 False 981 981 95.072 31 651 1 chr1D.!!$F1 620
2 TraesCS1D01G307600 chr1A 499616046 499617787 1741 True 1376 2447 92.781 888 2657 2 chr1A.!!$R1 1769
3 TraesCS1D01G307600 chr1A 449755580 449756129 549 False 787 787 92.545 2680 3227 1 chr1A.!!$F1 547
4 TraesCS1D01G307600 chr1B 543428309 543429649 1340 True 2218 2218 96.570 894 2231 1 chr1B.!!$R1 1337
5 TraesCS1D01G307600 chr2D 564119632 564120262 630 True 952 952 94.164 31 652 1 chr2D.!!$R3 621
6 TraesCS1D01G307600 chr2D 11535069 11535694 625 True 948 948 94.277 31 647 1 chr2D.!!$R1 616
7 TraesCS1D01G307600 chr2D 8641939 8642568 629 False 902 902 92.744 31 652 1 chr2D.!!$F1 621
8 TraesCS1D01G307600 chr2D 460331019 460331563 544 False 889 889 96.147 2685 3227 1 chr2D.!!$F3 542
9 TraesCS1D01G307600 chr2D 386723627 386724178 551 False 865 865 94.946 2676 3227 1 chr2D.!!$F2 551
10 TraesCS1D01G307600 chr2D 236144842 236145387 545 True 623 623 87.363 2684 3226 1 chr2D.!!$R2 542
11 TraesCS1D01G307600 chr4D 69136397 69137025 628 False 933 933 93.701 31 652 1 chr4D.!!$F1 621
12 TraesCS1D01G307600 chr7A 549723848 549724464 616 False 922 922 93.641 32 653 1 chr7A.!!$F1 621
13 TraesCS1D01G307600 chr6D 354520361 354520991 630 False 917 917 93.196 31 649 1 chr6D.!!$F1 618
14 TraesCS1D01G307600 chr4A 435035667 435036296 629 True 894 894 92.563 31 651 1 chr4A.!!$R1 620
15 TraesCS1D01G307600 chr6B 695833633 695834260 627 False 891 891 92.552 31 649 1 chr6B.!!$F1 618
16 TraesCS1D01G307600 chr2B 458085517 458086068 551 False 857 857 94.756 2677 3227 1 chr2B.!!$F1 550
17 TraesCS1D01G307600 chr7D 284669633 284670177 544 True 745 745 91.392 2685 3227 1 chr7D.!!$R2 542
18 TraesCS1D01G307600 chr2A 483447577 483448103 526 True 719 719 91.304 2686 3212 1 chr2A.!!$R1 526
19 TraesCS1D01G307600 chr3B 477374627 477375170 543 True 704 704 90.110 2685 3226 1 chr3B.!!$R1 541
20 TraesCS1D01G307600 chr3B 697142810 697143348 538 False 606 606 87.037 2684 3220 1 chr3B.!!$F1 536
21 TraesCS1D01G307600 chr5D 384479861 384480365 504 True 363 363 80.235 1040 1532 1 chr5D.!!$R1 492
22 TraesCS1D01G307600 chr5B 461304991 461305495 504 True 363 363 80.235 1040 1532 1 chr5B.!!$R1 492
23 TraesCS1D01G307600 chr5A 485387821 485388322 501 True 348 348 79.764 1040 1532 1 chr5A.!!$R1 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 687 0.107165 GCTCTAATCCACCGGCCTTT 60.107 55.0 0.0 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2657 2724 0.103572 GGCAATCCTCCGTAAGCGTA 59.896 55.0 0.0 0.0 36.15 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.352137 AGTTTTCACCATTGTTGATGATATCA 57.648 30.769 8.10 8.10 38.03 2.15
28 29 8.974238 AGTTTTCACCATTGTTGATGATATCAT 58.026 29.630 18.21 18.21 39.39 2.45
576 600 3.736732 TTTGGGTCGACGCGTTGGT 62.737 57.895 25.66 0.00 0.00 3.67
580 604 2.355481 GTCGACGCGTTGGTCCTT 60.355 61.111 25.66 0.00 33.30 3.36
653 677 3.217626 CCCATTGGAGTTGCTCTAATCC 58.782 50.000 3.62 0.00 39.14 3.01
654 678 3.371917 CCCATTGGAGTTGCTCTAATCCA 60.372 47.826 3.62 0.00 39.14 3.41
655 679 3.629398 CCATTGGAGTTGCTCTAATCCAC 59.371 47.826 0.00 0.00 39.14 4.02
656 680 3.350219 TTGGAGTTGCTCTAATCCACC 57.650 47.619 0.39 0.00 41.45 4.61
657 681 1.207089 TGGAGTTGCTCTAATCCACCG 59.793 52.381 0.00 0.00 36.92 4.94
658 682 1.473434 GGAGTTGCTCTAATCCACCGG 60.473 57.143 0.00 0.00 0.00 5.28
659 683 0.107654 AGTTGCTCTAATCCACCGGC 60.108 55.000 0.00 0.00 0.00 6.13
660 684 1.095807 GTTGCTCTAATCCACCGGCC 61.096 60.000 0.00 0.00 0.00 6.13
661 685 1.271840 TTGCTCTAATCCACCGGCCT 61.272 55.000 0.00 0.00 0.00 5.19
662 686 1.271840 TGCTCTAATCCACCGGCCTT 61.272 55.000 0.00 0.00 0.00 4.35
663 687 0.107165 GCTCTAATCCACCGGCCTTT 60.107 55.000 0.00 0.00 0.00 3.11
664 688 1.682087 GCTCTAATCCACCGGCCTTTT 60.682 52.381 0.00 0.00 0.00 2.27
665 689 2.723273 CTCTAATCCACCGGCCTTTTT 58.277 47.619 0.00 0.00 0.00 1.94
691 715 3.338818 CAAGCAGACGATTGTTGTTGT 57.661 42.857 0.00 0.00 33.77 3.32
692 716 3.038017 CAAGCAGACGATTGTTGTTGTG 58.962 45.455 0.00 0.00 33.77 3.33
693 717 1.002468 AGCAGACGATTGTTGTTGTGC 60.002 47.619 0.00 0.00 32.63 4.57
694 718 1.002468 GCAGACGATTGTTGTTGTGCT 60.002 47.619 0.00 0.00 30.88 4.40
695 719 2.908634 CAGACGATTGTTGTTGTGCTC 58.091 47.619 0.00 0.00 0.00 4.26
696 720 1.873591 AGACGATTGTTGTTGTGCTCC 59.126 47.619 0.00 0.00 0.00 4.70
697 721 0.951558 ACGATTGTTGTTGTGCTCCC 59.048 50.000 0.00 0.00 0.00 4.30
698 722 0.950836 CGATTGTTGTTGTGCTCCCA 59.049 50.000 0.00 0.00 0.00 4.37
699 723 1.336440 CGATTGTTGTTGTGCTCCCAA 59.664 47.619 0.00 0.00 0.00 4.12
700 724 2.223688 CGATTGTTGTTGTGCTCCCAAA 60.224 45.455 0.00 0.00 0.00 3.28
701 725 2.957491 TTGTTGTTGTGCTCCCAAAG 57.043 45.000 0.00 0.00 0.00 2.77
702 726 1.110442 TGTTGTTGTGCTCCCAAAGG 58.890 50.000 0.00 0.00 0.00 3.11
703 727 1.111277 GTTGTTGTGCTCCCAAAGGT 58.889 50.000 0.00 0.00 0.00 3.50
704 728 2.303175 GTTGTTGTGCTCCCAAAGGTA 58.697 47.619 0.00 0.00 0.00 3.08
705 729 2.691011 GTTGTTGTGCTCCCAAAGGTAA 59.309 45.455 0.00 0.00 0.00 2.85
706 730 3.019799 TGTTGTGCTCCCAAAGGTAAA 57.980 42.857 0.00 0.00 0.00 2.01
707 731 2.955660 TGTTGTGCTCCCAAAGGTAAAG 59.044 45.455 0.00 0.00 0.00 1.85
708 732 2.956333 GTTGTGCTCCCAAAGGTAAAGT 59.044 45.455 0.00 0.00 0.00 2.66
709 733 4.139038 GTTGTGCTCCCAAAGGTAAAGTA 58.861 43.478 0.00 0.00 0.00 2.24
710 734 4.440826 TGTGCTCCCAAAGGTAAAGTAA 57.559 40.909 0.00 0.00 0.00 2.24
711 735 4.794334 TGTGCTCCCAAAGGTAAAGTAAA 58.206 39.130 0.00 0.00 0.00 2.01
712 736 5.202004 TGTGCTCCCAAAGGTAAAGTAAAA 58.798 37.500 0.00 0.00 0.00 1.52
713 737 5.657302 TGTGCTCCCAAAGGTAAAGTAAAAA 59.343 36.000 0.00 0.00 0.00 1.94
735 759 6.459670 AAAAGTTGTCCCGATTTGTTTAGT 57.540 33.333 0.00 0.00 0.00 2.24
736 760 5.684550 AAGTTGTCCCGATTTGTTTAGTC 57.315 39.130 0.00 0.00 0.00 2.59
737 761 4.969484 AGTTGTCCCGATTTGTTTAGTCT 58.031 39.130 0.00 0.00 0.00 3.24
738 762 5.374071 AGTTGTCCCGATTTGTTTAGTCTT 58.626 37.500 0.00 0.00 0.00 3.01
739 763 5.238650 AGTTGTCCCGATTTGTTTAGTCTTG 59.761 40.000 0.00 0.00 0.00 3.02
740 764 4.963373 TGTCCCGATTTGTTTAGTCTTGA 58.037 39.130 0.00 0.00 0.00 3.02
741 765 4.994852 TGTCCCGATTTGTTTAGTCTTGAG 59.005 41.667 0.00 0.00 0.00 3.02
742 766 4.000988 TCCCGATTTGTTTAGTCTTGAGC 58.999 43.478 0.00 0.00 0.00 4.26
743 767 4.003648 CCCGATTTGTTTAGTCTTGAGCT 58.996 43.478 0.00 0.00 0.00 4.09
744 768 4.455877 CCCGATTTGTTTAGTCTTGAGCTT 59.544 41.667 0.00 0.00 0.00 3.74
745 769 5.642063 CCCGATTTGTTTAGTCTTGAGCTTA 59.358 40.000 0.00 0.00 0.00 3.09
746 770 6.183360 CCCGATTTGTTTAGTCTTGAGCTTAG 60.183 42.308 0.00 0.00 0.00 2.18
747 771 6.590292 CCGATTTGTTTAGTCTTGAGCTTAGA 59.410 38.462 0.00 0.00 0.00 2.10
748 772 7.117812 CCGATTTGTTTAGTCTTGAGCTTAGAA 59.882 37.037 1.49 0.00 0.00 2.10
749 773 8.495949 CGATTTGTTTAGTCTTGAGCTTAGAAA 58.504 33.333 1.49 0.00 0.00 2.52
750 774 9.818796 GATTTGTTTAGTCTTGAGCTTAGAAAG 57.181 33.333 1.49 0.00 0.00 2.62
751 775 8.732746 TTTGTTTAGTCTTGAGCTTAGAAAGT 57.267 30.769 1.49 0.00 0.00 2.66
752 776 8.732746 TTGTTTAGTCTTGAGCTTAGAAAGTT 57.267 30.769 1.49 0.00 0.00 2.66
753 777 8.366671 TGTTTAGTCTTGAGCTTAGAAAGTTC 57.633 34.615 1.49 0.00 38.98 3.01
754 778 7.441458 TGTTTAGTCTTGAGCTTAGAAAGTTCC 59.559 37.037 1.49 0.00 37.88 3.62
755 779 5.552870 AGTCTTGAGCTTAGAAAGTTCCA 57.447 39.130 1.49 0.00 37.88 3.53
756 780 5.546526 AGTCTTGAGCTTAGAAAGTTCCAG 58.453 41.667 1.49 0.88 37.88 3.86
757 781 5.305644 AGTCTTGAGCTTAGAAAGTTCCAGA 59.694 40.000 4.03 4.03 37.90 3.86
758 782 5.637387 GTCTTGAGCTTAGAAAGTTCCAGAG 59.363 44.000 7.31 1.93 39.82 3.35
759 783 5.305644 TCTTGAGCTTAGAAAGTTCCAGAGT 59.694 40.000 4.03 0.00 36.21 3.24
760 784 4.887748 TGAGCTTAGAAAGTTCCAGAGTG 58.112 43.478 0.00 0.00 37.88 3.51
761 785 4.345257 TGAGCTTAGAAAGTTCCAGAGTGT 59.655 41.667 0.00 0.00 37.88 3.55
762 786 5.163301 TGAGCTTAGAAAGTTCCAGAGTGTT 60.163 40.000 0.00 0.00 37.88 3.32
763 787 5.059833 AGCTTAGAAAGTTCCAGAGTGTTG 58.940 41.667 0.00 0.00 0.00 3.33
764 788 4.319839 GCTTAGAAAGTTCCAGAGTGTTGC 60.320 45.833 0.00 0.00 0.00 4.17
765 789 3.281727 AGAAAGTTCCAGAGTGTTGCA 57.718 42.857 0.00 0.00 0.00 4.08
766 790 3.620488 AGAAAGTTCCAGAGTGTTGCAA 58.380 40.909 0.00 0.00 0.00 4.08
767 791 4.210331 AGAAAGTTCCAGAGTGTTGCAAT 58.790 39.130 0.59 0.00 0.00 3.56
768 792 5.376625 AGAAAGTTCCAGAGTGTTGCAATA 58.623 37.500 0.59 0.00 0.00 1.90
769 793 5.827797 AGAAAGTTCCAGAGTGTTGCAATAA 59.172 36.000 0.59 0.00 0.00 1.40
770 794 6.321181 AGAAAGTTCCAGAGTGTTGCAATAAA 59.679 34.615 0.59 0.00 0.00 1.40
771 795 5.438761 AGTTCCAGAGTGTTGCAATAAAC 57.561 39.130 0.59 1.86 0.00 2.01
772 796 4.887071 AGTTCCAGAGTGTTGCAATAAACA 59.113 37.500 0.59 0.00 37.71 2.83
773 797 5.009010 AGTTCCAGAGTGTTGCAATAAACAG 59.991 40.000 0.59 0.00 40.60 3.16
774 798 4.713553 TCCAGAGTGTTGCAATAAACAGA 58.286 39.130 0.59 0.00 40.60 3.41
775 799 5.316167 TCCAGAGTGTTGCAATAAACAGAT 58.684 37.500 0.59 0.00 40.60 2.90
776 800 6.472016 TCCAGAGTGTTGCAATAAACAGATA 58.528 36.000 0.59 0.00 40.60 1.98
777 801 6.595326 TCCAGAGTGTTGCAATAAACAGATAG 59.405 38.462 0.59 0.00 40.60 2.08
778 802 6.372659 CCAGAGTGTTGCAATAAACAGATAGT 59.627 38.462 0.59 0.00 40.60 2.12
779 803 7.549134 CCAGAGTGTTGCAATAAACAGATAGTA 59.451 37.037 0.59 0.00 40.60 1.82
780 804 8.383619 CAGAGTGTTGCAATAAACAGATAGTAC 58.616 37.037 0.59 0.00 40.60 2.73
781 805 7.275779 AGAGTGTTGCAATAAACAGATAGTACG 59.724 37.037 0.59 0.00 40.60 3.67
782 806 6.872020 AGTGTTGCAATAAACAGATAGTACGT 59.128 34.615 0.59 0.00 40.60 3.57
783 807 7.063074 AGTGTTGCAATAAACAGATAGTACGTC 59.937 37.037 0.59 0.00 40.60 4.34
784 808 6.311935 TGTTGCAATAAACAGATAGTACGTCC 59.688 38.462 0.59 0.00 35.16 4.79
785 809 6.216801 TGCAATAAACAGATAGTACGTCCT 57.783 37.500 0.00 0.00 0.00 3.85
786 810 7.337480 TGCAATAAACAGATAGTACGTCCTA 57.663 36.000 0.00 0.00 0.00 2.94
787 811 7.423199 TGCAATAAACAGATAGTACGTCCTAG 58.577 38.462 0.00 0.00 0.00 3.02
788 812 6.362820 GCAATAAACAGATAGTACGTCCTAGC 59.637 42.308 0.00 0.00 0.00 3.42
789 813 7.423199 CAATAAACAGATAGTACGTCCTAGCA 58.577 38.462 6.19 0.00 0.00 3.49
790 814 4.897025 AACAGATAGTACGTCCTAGCAC 57.103 45.455 6.19 0.00 0.00 4.40
791 815 4.153673 ACAGATAGTACGTCCTAGCACT 57.846 45.455 6.19 0.00 0.00 4.40
792 816 4.128643 ACAGATAGTACGTCCTAGCACTC 58.871 47.826 6.19 0.00 0.00 3.51
793 817 4.141665 ACAGATAGTACGTCCTAGCACTCT 60.142 45.833 6.19 0.00 0.00 3.24
794 818 4.817464 CAGATAGTACGTCCTAGCACTCTT 59.183 45.833 6.19 0.00 0.00 2.85
795 819 5.297278 CAGATAGTACGTCCTAGCACTCTTT 59.703 44.000 6.19 0.00 0.00 2.52
796 820 6.482641 CAGATAGTACGTCCTAGCACTCTTTA 59.517 42.308 6.19 0.00 0.00 1.85
797 821 4.961435 AGTACGTCCTAGCACTCTTTAC 57.039 45.455 0.00 0.00 0.00 2.01
798 822 3.693578 AGTACGTCCTAGCACTCTTTACC 59.306 47.826 0.00 0.00 0.00 2.85
799 823 2.805194 ACGTCCTAGCACTCTTTACCT 58.195 47.619 0.00 0.00 0.00 3.08
800 824 3.163467 ACGTCCTAGCACTCTTTACCTT 58.837 45.455 0.00 0.00 0.00 3.50
801 825 3.193056 ACGTCCTAGCACTCTTTACCTTC 59.807 47.826 0.00 0.00 0.00 3.46
802 826 3.731264 CGTCCTAGCACTCTTTACCTTCG 60.731 52.174 0.00 0.00 0.00 3.79
803 827 2.165845 TCCTAGCACTCTTTACCTTCGC 59.834 50.000 0.00 0.00 0.00 4.70
804 828 2.166664 CCTAGCACTCTTTACCTTCGCT 59.833 50.000 0.00 0.00 0.00 4.93
805 829 2.841442 AGCACTCTTTACCTTCGCTT 57.159 45.000 0.00 0.00 0.00 4.68
806 830 2.417719 AGCACTCTTTACCTTCGCTTG 58.582 47.619 0.00 0.00 0.00 4.01
807 831 2.143925 GCACTCTTTACCTTCGCTTGT 58.856 47.619 0.00 0.00 0.00 3.16
808 832 2.096218 GCACTCTTTACCTTCGCTTGTG 60.096 50.000 0.00 0.00 0.00 3.33
809 833 3.390135 CACTCTTTACCTTCGCTTGTGA 58.610 45.455 0.00 0.00 0.00 3.58
810 834 3.184581 CACTCTTTACCTTCGCTTGTGAC 59.815 47.826 0.00 0.00 0.00 3.67
811 835 2.400399 TCTTTACCTTCGCTTGTGACG 58.600 47.619 0.00 0.00 0.00 4.35
812 836 2.132762 CTTTACCTTCGCTTGTGACGT 58.867 47.619 0.00 0.00 0.00 4.34
813 837 2.228138 TTACCTTCGCTTGTGACGTT 57.772 45.000 0.00 0.00 0.00 3.99
814 838 2.228138 TACCTTCGCTTGTGACGTTT 57.772 45.000 0.00 0.00 0.00 3.60
815 839 2.228138 ACCTTCGCTTGTGACGTTTA 57.772 45.000 0.00 0.00 0.00 2.01
816 840 2.553086 ACCTTCGCTTGTGACGTTTAA 58.447 42.857 0.00 0.00 0.00 1.52
817 841 3.135994 ACCTTCGCTTGTGACGTTTAAT 58.864 40.909 0.00 0.00 0.00 1.40
818 842 3.562557 ACCTTCGCTTGTGACGTTTAATT 59.437 39.130 0.00 0.00 0.00 1.40
819 843 4.035909 ACCTTCGCTTGTGACGTTTAATTT 59.964 37.500 0.00 0.00 0.00 1.82
820 844 4.378616 CCTTCGCTTGTGACGTTTAATTTG 59.621 41.667 0.00 0.00 0.00 2.32
821 845 4.539509 TCGCTTGTGACGTTTAATTTGT 57.460 36.364 0.00 0.00 0.00 2.83
822 846 4.520078 TCGCTTGTGACGTTTAATTTGTC 58.480 39.130 0.00 0.00 0.00 3.18
823 847 4.034163 TCGCTTGTGACGTTTAATTTGTCA 59.966 37.500 0.00 1.99 40.12 3.58
824 848 4.731000 CGCTTGTGACGTTTAATTTGTCAA 59.269 37.500 6.53 0.00 43.58 3.18
825 849 5.108780 CGCTTGTGACGTTTAATTTGTCAAG 60.109 40.000 6.53 0.00 43.58 3.02
826 850 5.173131 GCTTGTGACGTTTAATTTGTCAAGG 59.827 40.000 6.53 3.07 43.58 3.61
827 851 5.176407 TGTGACGTTTAATTTGTCAAGGG 57.824 39.130 6.53 0.00 43.58 3.95
828 852 3.978855 GTGACGTTTAATTTGTCAAGGGC 59.021 43.478 6.53 0.00 43.58 5.19
829 853 3.632604 TGACGTTTAATTTGTCAAGGGCA 59.367 39.130 0.00 0.00 39.50 5.36
830 854 3.972403 ACGTTTAATTTGTCAAGGGCAC 58.028 40.909 0.00 0.00 0.00 5.01
831 855 3.381908 ACGTTTAATTTGTCAAGGGCACA 59.618 39.130 0.00 0.00 0.00 4.57
832 856 4.038642 ACGTTTAATTTGTCAAGGGCACAT 59.961 37.500 0.00 0.00 0.00 3.21
833 857 4.385447 CGTTTAATTTGTCAAGGGCACATG 59.615 41.667 0.00 0.00 0.00 3.21
834 858 5.296748 GTTTAATTTGTCAAGGGCACATGT 58.703 37.500 0.00 0.00 0.00 3.21
835 859 5.543507 TTAATTTGTCAAGGGCACATGTT 57.456 34.783 0.00 0.00 0.00 2.71
836 860 6.656632 TTAATTTGTCAAGGGCACATGTTA 57.343 33.333 0.00 0.00 0.00 2.41
837 861 5.543507 AATTTGTCAAGGGCACATGTTAA 57.456 34.783 0.00 0.00 0.00 2.01
838 862 5.543507 ATTTGTCAAGGGCACATGTTAAA 57.456 34.783 0.00 0.00 0.00 1.52
839 863 4.582701 TTGTCAAGGGCACATGTTAAAG 57.417 40.909 0.00 0.00 0.00 1.85
840 864 2.890311 TGTCAAGGGCACATGTTAAAGG 59.110 45.455 0.00 0.00 0.00 3.11
841 865 2.231235 GTCAAGGGCACATGTTAAAGGG 59.769 50.000 0.00 0.00 0.00 3.95
842 866 1.550072 CAAGGGCACATGTTAAAGGGG 59.450 52.381 0.00 0.00 0.00 4.79
843 867 0.783850 AGGGCACATGTTAAAGGGGT 59.216 50.000 0.00 0.00 0.00 4.95
844 868 0.894835 GGGCACATGTTAAAGGGGTG 59.105 55.000 0.00 0.00 0.00 4.61
845 869 0.894835 GGCACATGTTAAAGGGGTGG 59.105 55.000 0.00 0.00 0.00 4.61
846 870 0.246360 GCACATGTTAAAGGGGTGGC 59.754 55.000 0.00 0.00 0.00 5.01
847 871 0.525761 CACATGTTAAAGGGGTGGCG 59.474 55.000 0.00 0.00 0.00 5.69
848 872 0.610785 ACATGTTAAAGGGGTGGCGG 60.611 55.000 0.00 0.00 0.00 6.13
849 873 1.680989 ATGTTAAAGGGGTGGCGGC 60.681 57.895 0.00 0.00 0.00 6.53
850 874 2.035155 GTTAAAGGGGTGGCGGCT 59.965 61.111 11.43 0.00 0.00 5.52
851 875 1.605451 GTTAAAGGGGTGGCGGCTT 60.605 57.895 11.43 0.00 0.00 4.35
852 876 1.154221 TTAAAGGGGTGGCGGCTTT 59.846 52.632 11.43 4.36 0.00 3.51
853 877 1.182385 TTAAAGGGGTGGCGGCTTTG 61.182 55.000 11.43 0.00 0.00 2.77
854 878 2.070399 TAAAGGGGTGGCGGCTTTGA 62.070 55.000 11.43 0.00 0.00 2.69
855 879 2.730129 AAAGGGGTGGCGGCTTTGAT 62.730 55.000 11.43 0.00 0.00 2.57
856 880 1.858739 AAGGGGTGGCGGCTTTGATA 61.859 55.000 11.43 0.00 0.00 2.15
857 881 1.379309 GGGGTGGCGGCTTTGATAA 60.379 57.895 11.43 0.00 0.00 1.75
858 882 0.968393 GGGGTGGCGGCTTTGATAAA 60.968 55.000 11.43 0.00 0.00 1.40
859 883 0.892063 GGGTGGCGGCTTTGATAAAA 59.108 50.000 11.43 0.00 0.00 1.52
860 884 1.135112 GGGTGGCGGCTTTGATAAAAG 60.135 52.381 11.43 0.00 0.00 2.27
861 885 1.544246 GGTGGCGGCTTTGATAAAAGT 59.456 47.619 11.43 0.00 32.52 2.66
862 886 2.029380 GGTGGCGGCTTTGATAAAAGTT 60.029 45.455 11.43 0.00 32.52 2.66
863 887 3.191791 GGTGGCGGCTTTGATAAAAGTTA 59.808 43.478 11.43 0.00 32.52 2.24
864 888 4.321378 GGTGGCGGCTTTGATAAAAGTTAA 60.321 41.667 11.43 0.00 32.52 2.01
865 889 5.407502 GTGGCGGCTTTGATAAAAGTTAAT 58.592 37.500 11.43 0.00 32.52 1.40
866 890 5.515270 GTGGCGGCTTTGATAAAAGTTAATC 59.485 40.000 11.43 0.00 32.52 1.75
867 891 5.184096 TGGCGGCTTTGATAAAAGTTAATCA 59.816 36.000 11.43 0.00 32.52 2.57
868 892 6.096695 GGCGGCTTTGATAAAAGTTAATCAA 58.903 36.000 0.00 8.70 39.66 2.57
869 893 6.756542 GGCGGCTTTGATAAAAGTTAATCAAT 59.243 34.615 0.00 0.00 40.71 2.57
870 894 7.277760 GGCGGCTTTGATAAAAGTTAATCAATT 59.722 33.333 0.00 0.00 40.71 2.32
871 895 9.296400 GCGGCTTTGATAAAAGTTAATCAATTA 57.704 29.630 12.08 1.82 40.71 1.40
878 902 9.474313 TGATAAAAGTTAATCAATTAGGGCACT 57.526 29.630 0.00 0.00 0.00 4.40
879 903 9.952188 GATAAAAGTTAATCAATTAGGGCACTC 57.048 33.333 0.00 0.00 0.00 3.51
880 904 7.775053 AAAAGTTAATCAATTAGGGCACTCA 57.225 32.000 0.00 0.00 0.00 3.41
881 905 7.775053 AAAGTTAATCAATTAGGGCACTCAA 57.225 32.000 0.00 0.00 0.00 3.02
882 906 7.961326 AAGTTAATCAATTAGGGCACTCAAT 57.039 32.000 0.00 0.00 0.00 2.57
883 907 7.961326 AGTTAATCAATTAGGGCACTCAATT 57.039 32.000 0.00 0.00 0.00 2.32
884 908 8.000780 AGTTAATCAATTAGGGCACTCAATTC 57.999 34.615 0.00 0.00 0.00 2.17
885 909 5.859205 AATCAATTAGGGCACTCAATTCC 57.141 39.130 0.00 0.00 0.00 3.01
886 910 3.278574 TCAATTAGGGCACTCAATTCCG 58.721 45.455 0.00 0.00 0.00 4.30
977 1001 1.374758 GGAGAGCAACCGACCACAG 60.375 63.158 0.00 0.00 0.00 3.66
980 1005 2.281070 AGCAACCGACCACAGCAG 60.281 61.111 0.00 0.00 0.00 4.24
1507 1564 4.388499 TCAAGAAGGGCGCCGTCC 62.388 66.667 23.85 10.46 32.53 4.79
1614 1671 2.580326 GGCGCCAAATGCATCGTG 60.580 61.111 24.80 1.01 41.33 4.35
1716 1773 2.544685 CTGTACTGGAAGATCAAGCCG 58.455 52.381 0.00 0.00 37.43 5.52
1873 1930 3.636231 CCAACAGCCGGGACTGGA 61.636 66.667 18.39 0.00 42.21 3.86
1935 1992 2.190578 GAGGAGTTCATGCCGGGG 59.809 66.667 2.18 0.00 0.00 5.73
2079 2136 0.251787 GGTTCTCTGGGCATGGGTTT 60.252 55.000 0.00 0.00 0.00 3.27
2184 2241 3.763897 AGCTCCGGCACTTTAAAATCAAT 59.236 39.130 0.00 0.00 41.70 2.57
2220 2277 0.953960 CCACGGGTAACAGCAAGGAC 60.954 60.000 0.00 0.00 39.74 3.85
2227 2284 3.621715 GGGTAACAGCAAGGACGATTAAG 59.378 47.826 0.00 0.00 39.74 1.85
2272 2329 6.946340 TGTGAGGCTTTCATAAATCTCAGTA 58.054 36.000 0.00 0.00 38.29 2.74
2339 2403 5.518848 AAATGTGTGCTTCAACTTCATCA 57.481 34.783 0.00 0.00 0.00 3.07
2348 2412 8.980610 TGTGCTTCAACTTCATCAAAATTATTG 58.019 29.630 0.00 0.00 0.00 1.90
2351 2415 8.981647 GCTTCAACTTCATCAAAATTATTGTGT 58.018 29.630 0.00 0.00 0.00 3.72
2359 2423 8.648422 TCATCAAAATTATTGTGTTCGTTACG 57.352 30.769 0.00 0.00 0.00 3.18
2363 2427 9.926751 TCAAAATTATTGTGTTCGTTACGTTTA 57.073 25.926 4.24 0.00 0.00 2.01
2384 2448 7.359598 CGTTTACTAGCTTCATCCATTAGCATC 60.360 40.741 0.00 0.00 37.37 3.91
2385 2449 5.822132 ACTAGCTTCATCCATTAGCATCT 57.178 39.130 0.00 0.00 37.37 2.90
2386 2450 5.792741 ACTAGCTTCATCCATTAGCATCTC 58.207 41.667 0.00 0.00 37.37 2.75
2387 2451 3.661944 AGCTTCATCCATTAGCATCTCG 58.338 45.455 0.00 0.00 37.37 4.04
2388 2452 2.159234 GCTTCATCCATTAGCATCTCGC 59.841 50.000 0.00 0.00 42.91 5.03
2389 2453 3.396560 CTTCATCCATTAGCATCTCGCA 58.603 45.455 0.00 0.00 46.13 5.10
2390 2454 3.690475 TCATCCATTAGCATCTCGCAT 57.310 42.857 0.00 0.00 46.13 4.73
2391 2455 3.332034 TCATCCATTAGCATCTCGCATG 58.668 45.455 0.00 0.00 46.13 4.06
2392 2456 3.007182 TCATCCATTAGCATCTCGCATGA 59.993 43.478 0.00 0.00 46.13 3.07
2393 2457 3.036075 TCCATTAGCATCTCGCATGAG 57.964 47.619 0.00 0.00 46.13 2.90
2406 2470 4.849883 CTCGCATGAGAATACTCGTAAGT 58.150 43.478 0.00 0.00 45.57 2.24
2407 2471 4.598062 TCGCATGAGAATACTCGTAAGTG 58.402 43.478 0.00 0.00 45.25 3.16
2408 2472 3.731216 CGCATGAGAATACTCGTAAGTGG 59.269 47.826 0.00 0.00 45.25 4.00
2409 2473 4.051922 GCATGAGAATACTCGTAAGTGGG 58.948 47.826 0.00 0.00 45.25 4.61
2410 2474 3.795623 TGAGAATACTCGTAAGTGGGC 57.204 47.619 0.00 0.00 45.25 5.36
2411 2475 3.362706 TGAGAATACTCGTAAGTGGGCT 58.637 45.455 0.00 0.00 45.25 5.19
2412 2476 3.767673 TGAGAATACTCGTAAGTGGGCTT 59.232 43.478 0.00 0.00 45.25 4.35
2413 2477 4.222145 TGAGAATACTCGTAAGTGGGCTTT 59.778 41.667 0.00 0.00 45.25 3.51
2414 2478 5.419788 TGAGAATACTCGTAAGTGGGCTTTA 59.580 40.000 0.00 0.00 45.25 1.85
2415 2479 6.071221 TGAGAATACTCGTAAGTGGGCTTTAA 60.071 38.462 0.00 0.00 45.25 1.52
2416 2480 6.704310 AGAATACTCGTAAGTGGGCTTTAAA 58.296 36.000 0.00 0.00 36.92 1.52
2417 2481 7.336396 AGAATACTCGTAAGTGGGCTTTAAAT 58.664 34.615 0.00 0.00 36.92 1.40
2418 2482 7.494952 AGAATACTCGTAAGTGGGCTTTAAATC 59.505 37.037 0.00 0.00 36.92 2.17
2419 2483 4.901868 ACTCGTAAGTGGGCTTTAAATCA 58.098 39.130 0.00 0.00 36.22 2.57
2420 2484 4.694037 ACTCGTAAGTGGGCTTTAAATCAC 59.306 41.667 7.83 7.83 36.22 3.06
2421 2485 4.643463 TCGTAAGTGGGCTTTAAATCACA 58.357 39.130 14.59 4.90 36.22 3.58
2422 2486 5.250200 TCGTAAGTGGGCTTTAAATCACAT 58.750 37.500 14.59 8.39 36.22 3.21
2423 2487 5.708230 TCGTAAGTGGGCTTTAAATCACATT 59.292 36.000 14.59 2.35 36.22 2.71
2424 2488 5.799936 CGTAAGTGGGCTTTAAATCACATTG 59.200 40.000 14.59 0.00 36.22 2.82
2425 2489 4.192429 AGTGGGCTTTAAATCACATTGC 57.808 40.909 14.59 3.07 33.01 3.56
2426 2490 3.577848 AGTGGGCTTTAAATCACATTGCA 59.422 39.130 14.59 0.00 33.01 4.08
2427 2491 4.223477 AGTGGGCTTTAAATCACATTGCAT 59.777 37.500 14.59 0.00 33.01 3.96
2465 2529 6.667370 CACTACATTGCATTTTAGTGTGACA 58.333 36.000 19.67 0.00 37.65 3.58
2469 2533 4.581077 TTGCATTTTAGTGTGACATGCA 57.419 36.364 5.29 5.29 46.54 3.96
2521 2585 7.545265 TGGTTATGCAAATAATTCTCACAAAGC 59.455 33.333 0.00 0.00 0.00 3.51
2523 2587 8.801913 GTTATGCAAATAATTCTCACAAAGCTC 58.198 33.333 0.00 0.00 0.00 4.09
2529 2593 8.866956 CAAATAATTCTCACAAAGCTCAAATCC 58.133 33.333 0.00 0.00 0.00 3.01
2541 2605 4.789807 AGCTCAAATCCTAATGACTGCAT 58.210 39.130 0.00 0.00 35.92 3.96
2554 2618 6.683974 AATGACTGCATTAGTATTCCACAC 57.316 37.500 0.00 0.00 42.73 3.82
2590 2654 9.533253 AAACTATATATCCAATTTTGCAGCAAC 57.467 29.630 7.54 0.00 0.00 4.17
2640 2707 8.090831 AGTAAGTTTAAAGTAGTCTTTACCCCG 58.909 37.037 0.00 0.00 43.20 5.73
2642 2709 7.066307 AGTTTAAAGTAGTCTTTACCCCGAA 57.934 36.000 0.00 0.00 43.20 4.30
2667 2734 6.875926 AAAAGTAGTATGTTACGCTTACGG 57.124 37.500 0.00 0.00 46.04 4.02
2668 2735 5.818136 AAGTAGTATGTTACGCTTACGGA 57.182 39.130 0.00 0.00 46.04 4.69
2669 2736 5.415415 AGTAGTATGTTACGCTTACGGAG 57.585 43.478 0.00 0.00 46.04 4.63
2670 2737 3.705043 AGTATGTTACGCTTACGGAGG 57.295 47.619 0.00 0.00 46.04 4.30
2671 2738 3.282021 AGTATGTTACGCTTACGGAGGA 58.718 45.455 0.00 0.00 46.04 3.71
2672 2739 3.887716 AGTATGTTACGCTTACGGAGGAT 59.112 43.478 0.00 0.00 46.04 3.24
2673 2740 3.814005 ATGTTACGCTTACGGAGGATT 57.186 42.857 0.00 0.00 46.04 3.01
2674 2741 2.883574 TGTTACGCTTACGGAGGATTG 58.116 47.619 0.00 0.00 46.04 2.67
2675 2742 1.591619 GTTACGCTTACGGAGGATTGC 59.408 52.381 0.00 0.00 46.04 3.56
2676 2743 0.103572 TACGCTTACGGAGGATTGCC 59.896 55.000 0.00 0.00 46.04 4.52
2677 2744 1.153449 CGCTTACGGAGGATTGCCA 60.153 57.895 0.00 0.00 33.77 4.92
2678 2745 0.742990 CGCTTACGGAGGATTGCCAA 60.743 55.000 0.00 0.00 33.77 4.52
2679 2746 0.733150 GCTTACGGAGGATTGCCAAC 59.267 55.000 0.00 0.00 36.29 3.77
2680 2747 1.948611 GCTTACGGAGGATTGCCAACA 60.949 52.381 0.00 0.00 36.29 3.33
2681 2748 2.432444 CTTACGGAGGATTGCCAACAA 58.568 47.619 0.00 0.00 40.87 2.83
3099 3170 3.270027 TGACCTGCATGATAAGGAAACG 58.730 45.455 14.46 0.00 37.01 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.059260 CAGTATGATATCATCAACAATGGTGAA 57.941 33.333 21.42 0.00 44.81 3.18
7 8 7.173735 GCAGTATGATATCATCAACAATGGTGA 59.826 37.037 21.42 2.44 45.44 4.02
8 9 7.303261 GCAGTATGATATCATCAACAATGGTG 58.697 38.462 21.42 10.03 43.50 4.17
9 10 6.148315 CGCAGTATGATATCATCAACAATGGT 59.852 38.462 21.42 0.00 43.50 3.55
10 11 6.402875 CCGCAGTATGATATCATCAACAATGG 60.403 42.308 21.42 12.98 43.50 3.16
11 12 6.369615 TCCGCAGTATGATATCATCAACAATG 59.630 38.462 21.42 14.04 43.50 2.82
12 13 6.466812 TCCGCAGTATGATATCATCAACAAT 58.533 36.000 21.42 0.86 43.50 2.71
13 14 5.852827 TCCGCAGTATGATATCATCAACAA 58.147 37.500 21.42 1.09 43.50 2.83
14 15 5.467035 TCCGCAGTATGATATCATCAACA 57.533 39.130 21.42 1.49 43.50 3.33
15 16 5.521735 GGATCCGCAGTATGATATCATCAAC 59.478 44.000 21.42 14.87 43.50 3.18
16 17 5.187576 TGGATCCGCAGTATGATATCATCAA 59.812 40.000 21.42 2.64 43.50 2.57
17 18 4.711355 TGGATCCGCAGTATGATATCATCA 59.289 41.667 21.42 6.86 44.55 3.07
18 19 5.068329 TCTGGATCCGCAGTATGATATCATC 59.932 44.000 21.42 12.96 39.69 2.92
19 20 4.958581 TCTGGATCCGCAGTATGATATCAT 59.041 41.667 21.50 21.50 39.69 2.45
20 21 4.344104 TCTGGATCCGCAGTATGATATCA 58.656 43.478 8.10 8.10 39.69 2.15
21 22 4.991153 TCTGGATCCGCAGTATGATATC 57.009 45.455 7.39 0.00 39.69 1.63
22 23 4.442612 GCATCTGGATCCGCAGTATGATAT 60.443 45.833 7.39 0.00 39.69 1.63
23 24 3.118992 GCATCTGGATCCGCAGTATGATA 60.119 47.826 7.39 0.00 39.69 2.15
24 25 2.354503 GCATCTGGATCCGCAGTATGAT 60.355 50.000 7.39 0.00 39.69 2.45
25 26 1.001293 GCATCTGGATCCGCAGTATGA 59.999 52.381 7.39 0.00 39.69 2.15
26 27 1.436600 GCATCTGGATCCGCAGTATG 58.563 55.000 7.39 7.18 40.87 2.39
27 28 0.322975 GGCATCTGGATCCGCAGTAT 59.677 55.000 7.39 0.00 0.00 2.12
28 29 1.048160 TGGCATCTGGATCCGCAGTA 61.048 55.000 7.39 0.00 0.00 2.74
29 30 1.913951 TTGGCATCTGGATCCGCAGT 61.914 55.000 7.39 0.00 0.00 4.40
176 180 3.787001 CGTGCTCCCCTTCCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
576 600 1.503818 GCGCGGACAAAAGTGAAGGA 61.504 55.000 8.83 0.00 0.00 3.36
580 604 1.820056 TTGGCGCGGACAAAAGTGA 60.820 52.632 8.83 0.00 0.00 3.41
662 686 8.132362 ACAACAATCGTCTGCTTGTTATAAAAA 58.868 29.630 0.00 0.00 41.19 1.94
663 687 7.644490 ACAACAATCGTCTGCTTGTTATAAAA 58.356 30.769 0.00 0.00 41.19 1.52
664 688 7.197071 ACAACAATCGTCTGCTTGTTATAAA 57.803 32.000 0.00 0.00 41.19 1.40
665 689 6.795098 ACAACAATCGTCTGCTTGTTATAA 57.205 33.333 0.00 0.00 41.19 0.98
666 690 6.203915 ACAACAACAATCGTCTGCTTGTTATA 59.796 34.615 13.64 0.00 41.19 0.98
667 691 5.008613 ACAACAACAATCGTCTGCTTGTTAT 59.991 36.000 13.64 6.41 41.19 1.89
668 692 4.334203 ACAACAACAATCGTCTGCTTGTTA 59.666 37.500 13.64 0.00 41.19 2.41
669 693 3.128589 ACAACAACAATCGTCTGCTTGTT 59.871 39.130 0.00 0.00 43.22 2.83
670 694 2.682856 ACAACAACAATCGTCTGCTTGT 59.317 40.909 0.00 0.00 36.05 3.16
671 695 3.038017 CACAACAACAATCGTCTGCTTG 58.962 45.455 0.00 0.00 0.00 4.01
672 696 2.541588 GCACAACAACAATCGTCTGCTT 60.542 45.455 0.00 0.00 0.00 3.91
673 697 1.002468 GCACAACAACAATCGTCTGCT 60.002 47.619 0.00 0.00 0.00 4.24
674 698 1.002468 AGCACAACAACAATCGTCTGC 60.002 47.619 0.00 0.00 0.00 4.26
675 699 2.349817 GGAGCACAACAACAATCGTCTG 60.350 50.000 0.00 0.00 0.00 3.51
676 700 1.873591 GGAGCACAACAACAATCGTCT 59.126 47.619 0.00 0.00 0.00 4.18
677 701 1.069227 GGGAGCACAACAACAATCGTC 60.069 52.381 0.00 0.00 0.00 4.20
678 702 0.951558 GGGAGCACAACAACAATCGT 59.048 50.000 0.00 0.00 0.00 3.73
679 703 0.950836 TGGGAGCACAACAACAATCG 59.049 50.000 0.00 0.00 0.00 3.34
680 704 3.383761 CTTTGGGAGCACAACAACAATC 58.616 45.455 0.00 0.00 0.00 2.67
681 705 2.102925 CCTTTGGGAGCACAACAACAAT 59.897 45.455 0.00 0.00 33.58 2.71
682 706 1.480137 CCTTTGGGAGCACAACAACAA 59.520 47.619 0.00 0.00 33.58 2.83
683 707 1.110442 CCTTTGGGAGCACAACAACA 58.890 50.000 0.00 0.00 33.58 3.33
684 708 1.111277 ACCTTTGGGAGCACAACAAC 58.889 50.000 0.00 0.00 36.25 3.32
685 709 2.738587 TACCTTTGGGAGCACAACAA 57.261 45.000 0.00 0.00 36.25 2.83
686 710 2.738587 TTACCTTTGGGAGCACAACA 57.261 45.000 0.00 0.00 36.25 3.33
687 711 2.956333 ACTTTACCTTTGGGAGCACAAC 59.044 45.455 0.00 0.00 36.25 3.32
688 712 3.306472 ACTTTACCTTTGGGAGCACAA 57.694 42.857 0.00 0.00 36.25 3.33
689 713 4.440826 TTACTTTACCTTTGGGAGCACA 57.559 40.909 0.00 0.00 36.25 4.57
690 714 5.777850 TTTTACTTTACCTTTGGGAGCAC 57.222 39.130 0.00 0.00 36.25 4.40
711 735 6.869695 ACTAAACAAATCGGGACAACTTTTT 58.130 32.000 0.00 0.00 0.00 1.94
712 736 6.320418 AGACTAAACAAATCGGGACAACTTTT 59.680 34.615 0.00 0.00 0.00 2.27
713 737 5.826208 AGACTAAACAAATCGGGACAACTTT 59.174 36.000 0.00 0.00 0.00 2.66
714 738 5.374071 AGACTAAACAAATCGGGACAACTT 58.626 37.500 0.00 0.00 0.00 2.66
715 739 4.969484 AGACTAAACAAATCGGGACAACT 58.031 39.130 0.00 0.00 0.00 3.16
716 740 5.237779 TCAAGACTAAACAAATCGGGACAAC 59.762 40.000 0.00 0.00 0.00 3.32
717 741 5.369833 TCAAGACTAAACAAATCGGGACAA 58.630 37.500 0.00 0.00 0.00 3.18
718 742 4.963373 TCAAGACTAAACAAATCGGGACA 58.037 39.130 0.00 0.00 0.00 4.02
719 743 4.142881 GCTCAAGACTAAACAAATCGGGAC 60.143 45.833 0.00 0.00 0.00 4.46
720 744 4.000988 GCTCAAGACTAAACAAATCGGGA 58.999 43.478 0.00 0.00 0.00 5.14
721 745 4.003648 AGCTCAAGACTAAACAAATCGGG 58.996 43.478 0.00 0.00 0.00 5.14
722 746 5.613358 AAGCTCAAGACTAAACAAATCGG 57.387 39.130 0.00 0.00 0.00 4.18
723 747 7.582435 TCTAAGCTCAAGACTAAACAAATCG 57.418 36.000 0.00 0.00 0.00 3.34
724 748 9.818796 CTTTCTAAGCTCAAGACTAAACAAATC 57.181 33.333 0.00 0.00 0.00 2.17
725 749 9.343539 ACTTTCTAAGCTCAAGACTAAACAAAT 57.656 29.630 0.00 0.00 0.00 2.32
726 750 8.732746 ACTTTCTAAGCTCAAGACTAAACAAA 57.267 30.769 0.00 0.00 0.00 2.83
727 751 8.732746 AACTTTCTAAGCTCAAGACTAAACAA 57.267 30.769 0.00 0.00 0.00 2.83
728 752 7.441458 GGAACTTTCTAAGCTCAAGACTAAACA 59.559 37.037 0.00 0.00 0.00 2.83
729 753 7.441458 TGGAACTTTCTAAGCTCAAGACTAAAC 59.559 37.037 0.00 0.00 0.00 2.01
730 754 7.506114 TGGAACTTTCTAAGCTCAAGACTAAA 58.494 34.615 0.00 0.00 0.00 1.85
731 755 7.015292 TCTGGAACTTTCTAAGCTCAAGACTAA 59.985 37.037 0.00 0.00 30.58 2.24
732 756 6.493802 TCTGGAACTTTCTAAGCTCAAGACTA 59.506 38.462 0.00 0.00 30.58 2.59
733 757 5.305644 TCTGGAACTTTCTAAGCTCAAGACT 59.694 40.000 0.00 0.00 30.58 3.24
734 758 5.542779 TCTGGAACTTTCTAAGCTCAAGAC 58.457 41.667 0.00 0.00 30.58 3.01
735 759 5.305644 ACTCTGGAACTTTCTAAGCTCAAGA 59.694 40.000 0.00 0.00 32.58 3.02
736 760 5.407995 CACTCTGGAACTTTCTAAGCTCAAG 59.592 44.000 0.00 0.00 0.00 3.02
737 761 5.163301 ACACTCTGGAACTTTCTAAGCTCAA 60.163 40.000 0.00 0.00 0.00 3.02
738 762 4.345257 ACACTCTGGAACTTTCTAAGCTCA 59.655 41.667 0.00 0.00 0.00 4.26
739 763 4.888917 ACACTCTGGAACTTTCTAAGCTC 58.111 43.478 0.00 0.00 0.00 4.09
740 764 4.965200 ACACTCTGGAACTTTCTAAGCT 57.035 40.909 0.00 0.00 0.00 3.74
741 765 4.319839 GCAACACTCTGGAACTTTCTAAGC 60.320 45.833 0.00 0.00 0.00 3.09
742 766 4.816385 TGCAACACTCTGGAACTTTCTAAG 59.184 41.667 0.00 0.00 0.00 2.18
743 767 4.776349 TGCAACACTCTGGAACTTTCTAA 58.224 39.130 0.00 0.00 0.00 2.10
744 768 4.415881 TGCAACACTCTGGAACTTTCTA 57.584 40.909 0.00 0.00 0.00 2.10
745 769 3.281727 TGCAACACTCTGGAACTTTCT 57.718 42.857 0.00 0.00 0.00 2.52
746 770 4.574599 ATTGCAACACTCTGGAACTTTC 57.425 40.909 0.00 0.00 28.69 2.62
747 771 6.127479 TGTTTATTGCAACACTCTGGAACTTT 60.127 34.615 0.00 0.00 31.48 2.66
748 772 5.359576 TGTTTATTGCAACACTCTGGAACTT 59.640 36.000 0.00 0.00 31.48 2.66
749 773 4.887071 TGTTTATTGCAACACTCTGGAACT 59.113 37.500 0.00 0.00 31.48 3.01
750 774 5.008613 TCTGTTTATTGCAACACTCTGGAAC 59.991 40.000 0.00 0.00 33.04 3.62
751 775 5.129634 TCTGTTTATTGCAACACTCTGGAA 58.870 37.500 0.00 0.00 33.04 3.53
752 776 4.713553 TCTGTTTATTGCAACACTCTGGA 58.286 39.130 0.00 0.00 33.04 3.86
753 777 5.633830 ATCTGTTTATTGCAACACTCTGG 57.366 39.130 0.00 0.00 33.04 3.86
754 778 7.369803 ACTATCTGTTTATTGCAACACTCTG 57.630 36.000 0.00 0.00 33.04 3.35
755 779 7.275779 CGTACTATCTGTTTATTGCAACACTCT 59.724 37.037 0.00 0.00 33.04 3.24
756 780 7.063074 ACGTACTATCTGTTTATTGCAACACTC 59.937 37.037 0.00 0.00 33.04 3.51
757 781 6.872020 ACGTACTATCTGTTTATTGCAACACT 59.128 34.615 0.00 0.00 33.04 3.55
758 782 7.057149 ACGTACTATCTGTTTATTGCAACAC 57.943 36.000 0.00 0.00 33.04 3.32
759 783 6.311935 GGACGTACTATCTGTTTATTGCAACA 59.688 38.462 0.00 0.00 35.33 3.33
760 784 6.534079 AGGACGTACTATCTGTTTATTGCAAC 59.466 38.462 0.00 0.00 0.00 4.17
761 785 6.636705 AGGACGTACTATCTGTTTATTGCAA 58.363 36.000 0.00 0.00 0.00 4.08
762 786 6.216801 AGGACGTACTATCTGTTTATTGCA 57.783 37.500 0.00 0.00 0.00 4.08
763 787 6.362820 GCTAGGACGTACTATCTGTTTATTGC 59.637 42.308 8.25 0.08 0.00 3.56
764 788 7.378995 GTGCTAGGACGTACTATCTGTTTATTG 59.621 40.741 8.25 0.00 0.00 1.90
765 789 7.284944 AGTGCTAGGACGTACTATCTGTTTATT 59.715 37.037 8.25 0.00 0.00 1.40
766 790 6.771749 AGTGCTAGGACGTACTATCTGTTTAT 59.228 38.462 8.25 0.00 0.00 1.40
767 791 6.118170 AGTGCTAGGACGTACTATCTGTTTA 58.882 40.000 8.25 0.00 0.00 2.01
768 792 4.948621 AGTGCTAGGACGTACTATCTGTTT 59.051 41.667 8.25 0.00 0.00 2.83
769 793 4.525024 AGTGCTAGGACGTACTATCTGTT 58.475 43.478 8.25 0.00 0.00 3.16
770 794 4.128643 GAGTGCTAGGACGTACTATCTGT 58.871 47.826 8.25 0.00 29.74 3.41
771 795 4.382291 AGAGTGCTAGGACGTACTATCTG 58.618 47.826 8.25 0.00 29.74 2.90
772 796 4.693042 AGAGTGCTAGGACGTACTATCT 57.307 45.455 8.25 5.37 29.74 1.98
773 797 5.754543 AAAGAGTGCTAGGACGTACTATC 57.245 43.478 8.25 4.63 29.74 2.08
774 798 5.530543 GGTAAAGAGTGCTAGGACGTACTAT 59.469 44.000 8.25 0.00 29.74 2.12
775 799 4.878397 GGTAAAGAGTGCTAGGACGTACTA 59.122 45.833 7.43 7.43 29.74 1.82
776 800 3.693578 GGTAAAGAGTGCTAGGACGTACT 59.306 47.826 5.18 5.18 32.36 2.73
777 801 3.693578 AGGTAAAGAGTGCTAGGACGTAC 59.306 47.826 8.90 9.66 0.00 3.67
778 802 3.960571 AGGTAAAGAGTGCTAGGACGTA 58.039 45.455 8.90 0.00 0.00 3.57
779 803 2.805194 AGGTAAAGAGTGCTAGGACGT 58.195 47.619 8.90 0.00 0.00 4.34
780 804 3.731264 CGAAGGTAAAGAGTGCTAGGACG 60.731 52.174 8.90 0.00 0.00 4.79
781 805 3.771798 CGAAGGTAAAGAGTGCTAGGAC 58.228 50.000 6.22 6.22 0.00 3.85
782 806 2.165845 GCGAAGGTAAAGAGTGCTAGGA 59.834 50.000 0.00 0.00 0.00 2.94
783 807 2.166664 AGCGAAGGTAAAGAGTGCTAGG 59.833 50.000 0.00 0.00 35.08 3.02
784 808 3.512033 AGCGAAGGTAAAGAGTGCTAG 57.488 47.619 0.00 0.00 35.08 3.42
785 809 3.006537 ACAAGCGAAGGTAAAGAGTGCTA 59.993 43.478 0.00 0.00 37.06 3.49
786 810 2.224305 ACAAGCGAAGGTAAAGAGTGCT 60.224 45.455 0.00 0.00 37.06 4.40
787 811 2.096218 CACAAGCGAAGGTAAAGAGTGC 60.096 50.000 0.00 0.00 37.06 4.40
788 812 3.184581 GTCACAAGCGAAGGTAAAGAGTG 59.815 47.826 0.00 0.00 37.06 3.51
789 813 3.391049 GTCACAAGCGAAGGTAAAGAGT 58.609 45.455 0.00 0.00 37.06 3.24
790 814 2.408704 CGTCACAAGCGAAGGTAAAGAG 59.591 50.000 0.00 0.00 37.06 2.85
791 815 2.223876 ACGTCACAAGCGAAGGTAAAGA 60.224 45.455 0.00 0.00 37.06 2.52
792 816 2.132762 ACGTCACAAGCGAAGGTAAAG 58.867 47.619 0.00 0.00 37.06 1.85
793 817 2.228138 ACGTCACAAGCGAAGGTAAA 57.772 45.000 0.00 0.00 37.06 2.01
794 818 2.228138 AACGTCACAAGCGAAGGTAA 57.772 45.000 0.00 0.00 37.06 2.85
795 819 2.228138 AAACGTCACAAGCGAAGGTA 57.772 45.000 0.00 0.00 37.06 3.08
796 820 2.228138 TAAACGTCACAAGCGAAGGT 57.772 45.000 0.00 0.00 44.60 3.50
797 821 3.806316 ATTAAACGTCACAAGCGAAGG 57.194 42.857 0.00 0.00 0.00 3.46
798 822 4.967575 ACAAATTAAACGTCACAAGCGAAG 59.032 37.500 0.00 0.00 0.00 3.79
799 823 4.911053 ACAAATTAAACGTCACAAGCGAA 58.089 34.783 0.00 0.00 0.00 4.70
800 824 4.034163 TGACAAATTAAACGTCACAAGCGA 59.966 37.500 0.00 0.00 34.83 4.93
801 825 4.275662 TGACAAATTAAACGTCACAAGCG 58.724 39.130 0.00 0.00 34.83 4.68
802 826 5.173131 CCTTGACAAATTAAACGTCACAAGC 59.827 40.000 0.00 0.00 39.29 4.01
803 827 5.685511 CCCTTGACAAATTAAACGTCACAAG 59.314 40.000 0.00 0.00 39.29 3.16
804 828 5.583495 CCCTTGACAAATTAAACGTCACAA 58.417 37.500 4.89 0.00 39.29 3.33
805 829 4.498345 GCCCTTGACAAATTAAACGTCACA 60.498 41.667 4.89 0.00 39.29 3.58
806 830 3.978855 GCCCTTGACAAATTAAACGTCAC 59.021 43.478 4.89 0.00 39.29 3.67
807 831 3.632604 TGCCCTTGACAAATTAAACGTCA 59.367 39.130 0.00 1.95 37.87 4.35
808 832 3.978855 GTGCCCTTGACAAATTAAACGTC 59.021 43.478 0.00 0.00 0.00 4.34
809 833 3.381908 TGTGCCCTTGACAAATTAAACGT 59.618 39.130 0.00 0.00 0.00 3.99
810 834 3.971150 TGTGCCCTTGACAAATTAAACG 58.029 40.909 0.00 0.00 0.00 3.60
811 835 5.296748 ACATGTGCCCTTGACAAATTAAAC 58.703 37.500 0.00 0.00 0.00 2.01
812 836 5.543507 ACATGTGCCCTTGACAAATTAAA 57.456 34.783 0.00 0.00 0.00 1.52
813 837 5.543507 AACATGTGCCCTTGACAAATTAA 57.456 34.783 0.00 0.00 0.00 1.40
814 838 6.656632 TTAACATGTGCCCTTGACAAATTA 57.343 33.333 0.00 0.00 0.00 1.40
815 839 5.543507 TTAACATGTGCCCTTGACAAATT 57.456 34.783 0.00 0.00 0.00 1.82
816 840 5.511202 CCTTTAACATGTGCCCTTGACAAAT 60.511 40.000 0.00 0.00 0.00 2.32
817 841 4.202202 CCTTTAACATGTGCCCTTGACAAA 60.202 41.667 0.00 0.00 0.00 2.83
818 842 3.320541 CCTTTAACATGTGCCCTTGACAA 59.679 43.478 0.00 0.00 0.00 3.18
819 843 2.890311 CCTTTAACATGTGCCCTTGACA 59.110 45.455 0.00 0.00 0.00 3.58
820 844 2.231235 CCCTTTAACATGTGCCCTTGAC 59.769 50.000 0.00 0.00 0.00 3.18
821 845 2.524306 CCCTTTAACATGTGCCCTTGA 58.476 47.619 0.00 0.00 0.00 3.02
822 846 1.550072 CCCCTTTAACATGTGCCCTTG 59.450 52.381 0.00 0.00 0.00 3.61
823 847 1.149077 ACCCCTTTAACATGTGCCCTT 59.851 47.619 0.00 0.00 0.00 3.95
824 848 0.783850 ACCCCTTTAACATGTGCCCT 59.216 50.000 0.00 0.00 0.00 5.19
825 849 0.894835 CACCCCTTTAACATGTGCCC 59.105 55.000 0.00 0.00 0.00 5.36
826 850 0.894835 CCACCCCTTTAACATGTGCC 59.105 55.000 0.00 0.00 0.00 5.01
827 851 0.246360 GCCACCCCTTTAACATGTGC 59.754 55.000 0.00 0.00 0.00 4.57
828 852 0.525761 CGCCACCCCTTTAACATGTG 59.474 55.000 0.00 0.00 0.00 3.21
829 853 0.610785 CCGCCACCCCTTTAACATGT 60.611 55.000 0.00 0.00 0.00 3.21
830 854 1.944234 GCCGCCACCCCTTTAACATG 61.944 60.000 0.00 0.00 0.00 3.21
831 855 1.680989 GCCGCCACCCCTTTAACAT 60.681 57.895 0.00 0.00 0.00 2.71
832 856 2.282603 GCCGCCACCCCTTTAACA 60.283 61.111 0.00 0.00 0.00 2.41
833 857 1.183030 AAAGCCGCCACCCCTTTAAC 61.183 55.000 0.00 0.00 0.00 2.01
834 858 1.154221 AAAGCCGCCACCCCTTTAA 59.846 52.632 0.00 0.00 0.00 1.52
835 859 1.605165 CAAAGCCGCCACCCCTTTA 60.605 57.895 0.00 0.00 0.00 1.85
836 860 2.730129 ATCAAAGCCGCCACCCCTTT 62.730 55.000 0.00 0.00 0.00 3.11
837 861 1.858739 TATCAAAGCCGCCACCCCTT 61.859 55.000 0.00 0.00 0.00 3.95
838 862 1.858739 TTATCAAAGCCGCCACCCCT 61.859 55.000 0.00 0.00 0.00 4.79
839 863 0.968393 TTTATCAAAGCCGCCACCCC 60.968 55.000 0.00 0.00 0.00 4.95
840 864 0.892063 TTTTATCAAAGCCGCCACCC 59.108 50.000 0.00 0.00 0.00 4.61
841 865 1.544246 ACTTTTATCAAAGCCGCCACC 59.456 47.619 0.00 0.00 43.03 4.61
842 866 3.297830 AACTTTTATCAAAGCCGCCAC 57.702 42.857 0.00 0.00 43.03 5.01
843 867 5.184096 TGATTAACTTTTATCAAAGCCGCCA 59.816 36.000 0.00 0.00 43.03 5.69
844 868 5.646606 TGATTAACTTTTATCAAAGCCGCC 58.353 37.500 0.00 0.00 43.03 6.13
845 869 7.755582 ATTGATTAACTTTTATCAAAGCCGC 57.244 32.000 7.31 0.00 43.03 6.53
852 876 9.474313 AGTGCCCTAATTGATTAACTTTTATCA 57.526 29.630 0.00 0.00 0.00 2.15
853 877 9.952188 GAGTGCCCTAATTGATTAACTTTTATC 57.048 33.333 0.00 0.00 0.00 1.75
854 878 9.474313 TGAGTGCCCTAATTGATTAACTTTTAT 57.526 29.630 0.00 0.00 0.00 1.40
855 879 8.871629 TGAGTGCCCTAATTGATTAACTTTTA 57.128 30.769 0.00 0.00 0.00 1.52
856 880 7.775053 TGAGTGCCCTAATTGATTAACTTTT 57.225 32.000 0.00 0.00 0.00 2.27
857 881 7.775053 TTGAGTGCCCTAATTGATTAACTTT 57.225 32.000 0.00 0.00 0.00 2.66
858 882 7.961326 ATTGAGTGCCCTAATTGATTAACTT 57.039 32.000 0.00 0.00 0.00 2.66
859 883 7.068716 GGAATTGAGTGCCCTAATTGATTAACT 59.931 37.037 0.00 0.00 0.00 2.24
860 884 7.203218 GGAATTGAGTGCCCTAATTGATTAAC 58.797 38.462 0.00 0.00 0.00 2.01
861 885 6.039270 CGGAATTGAGTGCCCTAATTGATTAA 59.961 38.462 0.00 0.00 0.00 1.40
862 886 5.530915 CGGAATTGAGTGCCCTAATTGATTA 59.469 40.000 0.00 0.00 0.00 1.75
863 887 4.339247 CGGAATTGAGTGCCCTAATTGATT 59.661 41.667 0.00 0.00 0.00 2.57
864 888 3.885297 CGGAATTGAGTGCCCTAATTGAT 59.115 43.478 0.00 0.00 0.00 2.57
865 889 3.278574 CGGAATTGAGTGCCCTAATTGA 58.721 45.455 0.00 0.00 0.00 2.57
866 890 2.223572 GCGGAATTGAGTGCCCTAATTG 60.224 50.000 0.00 0.00 0.00 2.32
867 891 2.024414 GCGGAATTGAGTGCCCTAATT 58.976 47.619 0.00 0.00 0.00 1.40
868 892 1.212935 AGCGGAATTGAGTGCCCTAAT 59.787 47.619 0.00 0.00 0.00 1.73
869 893 0.618458 AGCGGAATTGAGTGCCCTAA 59.382 50.000 0.00 0.00 0.00 2.69
870 894 1.138266 GTAGCGGAATTGAGTGCCCTA 59.862 52.381 0.00 0.00 0.00 3.53
871 895 0.107654 GTAGCGGAATTGAGTGCCCT 60.108 55.000 0.00 0.00 0.00 5.19
872 896 0.392461 TGTAGCGGAATTGAGTGCCC 60.392 55.000 0.00 0.00 0.00 5.36
873 897 1.599542 GATGTAGCGGAATTGAGTGCC 59.400 52.381 0.00 0.00 0.00 5.01
874 898 2.555199 AGATGTAGCGGAATTGAGTGC 58.445 47.619 0.00 0.00 0.00 4.40
883 907 8.188799 GCAAACAGTATATATAGATGTAGCGGA 58.811 37.037 9.77 0.00 0.00 5.54
884 908 7.435488 GGCAAACAGTATATATAGATGTAGCGG 59.565 40.741 17.85 9.21 0.00 5.52
885 909 7.973944 TGGCAAACAGTATATATAGATGTAGCG 59.026 37.037 17.85 10.07 0.00 4.26
886 910 9.088512 GTGGCAAACAGTATATATAGATGTAGC 57.911 37.037 17.09 17.09 0.00 3.58
905 929 3.181455 TGCTCTAGTTGAAGAGTGGCAAA 60.181 43.478 0.00 0.00 44.13 3.68
1507 1564 1.002544 GACCTCCTTGTTGTCCCTGAG 59.997 57.143 0.00 0.00 0.00 3.35
1873 1930 3.771160 GTCGCCACCACCGGAGAT 61.771 66.667 9.46 0.00 37.20 2.75
2079 2136 2.364579 ACCGCCGGTCCCATCTTA 60.365 61.111 1.02 0.00 0.00 2.10
2220 2277 9.559958 AATTGAATTAGCAAACTGACTTAATCG 57.440 29.630 0.00 0.00 0.00 3.34
2227 2284 9.282247 CTCACATAATTGAATTAGCAAACTGAC 57.718 33.333 3.83 0.00 0.00 3.51
2272 2329 9.326413 CACTCGGAATGTAATCTTATTTAGGTT 57.674 33.333 0.00 0.00 0.00 3.50
2339 2403 9.934190 AGTAAACGTAACGAACACAATAATTTT 57.066 25.926 0.00 0.00 0.00 1.82
2348 2412 5.399301 TGAAGCTAGTAAACGTAACGAACAC 59.601 40.000 0.00 0.00 0.00 3.32
2351 2415 5.801947 GGATGAAGCTAGTAAACGTAACGAA 59.198 40.000 0.00 0.00 0.00 3.85
2359 2423 7.659390 AGATGCTAATGGATGAAGCTAGTAAAC 59.341 37.037 0.00 0.00 37.16 2.01
2363 2427 5.566429 CGAGATGCTAATGGATGAAGCTAGT 60.566 44.000 0.00 0.00 37.16 2.57
2384 2448 4.672862 CACTTACGAGTATTCTCATGCGAG 59.327 45.833 0.00 0.00 40.44 5.03
2385 2449 4.497507 CCACTTACGAGTATTCTCATGCGA 60.498 45.833 0.00 0.00 40.44 5.10
2386 2450 3.731216 CCACTTACGAGTATTCTCATGCG 59.269 47.826 0.00 0.00 40.44 4.73
2387 2451 4.051922 CCCACTTACGAGTATTCTCATGC 58.948 47.826 0.00 0.00 40.44 4.06
2388 2452 4.051922 GCCCACTTACGAGTATTCTCATG 58.948 47.826 0.00 0.00 40.44 3.07
2389 2453 3.961408 AGCCCACTTACGAGTATTCTCAT 59.039 43.478 0.00 0.00 40.44 2.90
2390 2454 3.362706 AGCCCACTTACGAGTATTCTCA 58.637 45.455 0.00 0.00 40.44 3.27
2391 2455 4.388378 AAGCCCACTTACGAGTATTCTC 57.612 45.455 0.00 0.00 33.13 2.87
2392 2456 4.820894 AAAGCCCACTTACGAGTATTCT 57.179 40.909 0.00 0.00 34.05 2.40
2393 2457 6.973229 TTTAAAGCCCACTTACGAGTATTC 57.027 37.500 0.00 0.00 34.05 1.75
2394 2458 7.065443 GTGATTTAAAGCCCACTTACGAGTATT 59.935 37.037 0.17 0.00 34.05 1.89
2395 2459 6.537660 GTGATTTAAAGCCCACTTACGAGTAT 59.462 38.462 0.17 0.00 34.05 2.12
2396 2460 5.870978 GTGATTTAAAGCCCACTTACGAGTA 59.129 40.000 0.17 0.00 34.05 2.59
2397 2461 4.694037 GTGATTTAAAGCCCACTTACGAGT 59.306 41.667 0.17 0.00 34.05 4.18
2398 2462 4.693566 TGTGATTTAAAGCCCACTTACGAG 59.306 41.667 14.89 0.00 34.05 4.18
2399 2463 4.643463 TGTGATTTAAAGCCCACTTACGA 58.357 39.130 14.89 0.00 34.05 3.43
2400 2464 5.560966 ATGTGATTTAAAGCCCACTTACG 57.439 39.130 14.89 0.00 34.05 3.18
2401 2465 5.576774 GCAATGTGATTTAAAGCCCACTTAC 59.423 40.000 14.89 2.39 34.05 2.34
2402 2466 5.244851 TGCAATGTGATTTAAAGCCCACTTA 59.755 36.000 14.89 2.26 34.05 2.24
2403 2467 4.040217 TGCAATGTGATTTAAAGCCCACTT 59.960 37.500 14.89 8.95 37.90 3.16
2404 2468 3.577848 TGCAATGTGATTTAAAGCCCACT 59.422 39.130 14.89 0.00 0.00 4.00
2405 2469 3.924144 TGCAATGTGATTTAAAGCCCAC 58.076 40.909 0.17 6.18 0.00 4.61
2406 2470 4.822685 ATGCAATGTGATTTAAAGCCCA 57.177 36.364 0.17 0.00 0.00 5.36
2407 2471 6.149142 TCAAAATGCAATGTGATTTAAAGCCC 59.851 34.615 0.17 0.00 0.00 5.19
2408 2472 7.017055 GTCAAAATGCAATGTGATTTAAAGCC 58.983 34.615 0.00 0.00 0.00 4.35
2409 2473 7.017055 GGTCAAAATGCAATGTGATTTAAAGC 58.983 34.615 0.00 0.00 0.00 3.51
2410 2474 7.361116 GGGGTCAAAATGCAATGTGATTTAAAG 60.361 37.037 0.00 0.00 0.00 1.85
2411 2475 6.429385 GGGGTCAAAATGCAATGTGATTTAAA 59.571 34.615 0.00 0.00 0.00 1.52
2412 2476 5.936956 GGGGTCAAAATGCAATGTGATTTAA 59.063 36.000 0.00 0.00 0.00 1.52
2413 2477 5.012458 TGGGGTCAAAATGCAATGTGATTTA 59.988 36.000 0.00 0.00 0.00 1.40
2414 2478 4.202440 TGGGGTCAAAATGCAATGTGATTT 60.202 37.500 0.00 0.00 0.00 2.17
2415 2479 3.327172 TGGGGTCAAAATGCAATGTGATT 59.673 39.130 0.00 0.00 0.00 2.57
2416 2480 2.905085 TGGGGTCAAAATGCAATGTGAT 59.095 40.909 0.00 0.00 0.00 3.06
2417 2481 2.323599 TGGGGTCAAAATGCAATGTGA 58.676 42.857 0.00 0.00 0.00 3.58
2418 2482 2.835580 TGGGGTCAAAATGCAATGTG 57.164 45.000 0.00 0.00 0.00 3.21
2419 2483 3.853355 TTTGGGGTCAAAATGCAATGT 57.147 38.095 0.00 0.00 39.64 2.71
2427 2491 5.665459 CAATGTAGTGTTTTGGGGTCAAAA 58.335 37.500 0.78 0.78 46.81 2.44
2441 2505 6.667370 TGTCACACTAAAATGCAATGTAGTG 58.333 36.000 24.64 24.64 44.86 2.74
2443 2507 6.252015 GCATGTCACACTAAAATGCAATGTAG 59.748 38.462 0.00 0.00 42.48 2.74
2445 2509 4.925054 GCATGTCACACTAAAATGCAATGT 59.075 37.500 0.00 0.00 42.48 2.71
2575 2639 1.258458 CACACGTTGCTGCAAAATTGG 59.742 47.619 17.80 7.80 0.00 3.16
2583 2647 1.927174 CTATACCTCACACGTTGCTGC 59.073 52.381 0.00 0.00 0.00 5.25
2648 2715 4.273480 TCCTCCGTAAGCGTAACATACTAC 59.727 45.833 0.00 0.00 36.15 2.73
2649 2716 4.450976 TCCTCCGTAAGCGTAACATACTA 58.549 43.478 0.00 0.00 36.15 1.82
2650 2717 3.282021 TCCTCCGTAAGCGTAACATACT 58.718 45.455 0.00 0.00 36.15 2.12
2651 2718 3.698029 TCCTCCGTAAGCGTAACATAC 57.302 47.619 0.00 0.00 36.15 2.39
2652 2719 4.613944 CAATCCTCCGTAAGCGTAACATA 58.386 43.478 0.00 0.00 36.15 2.29
2653 2720 3.454375 CAATCCTCCGTAAGCGTAACAT 58.546 45.455 0.00 0.00 36.15 2.71
2657 2724 0.103572 GGCAATCCTCCGTAAGCGTA 59.896 55.000 0.00 0.00 36.15 4.42
2658 2725 1.153429 GGCAATCCTCCGTAAGCGT 60.153 57.895 0.00 0.00 36.15 5.07
2659 2726 0.742990 TTGGCAATCCTCCGTAAGCG 60.743 55.000 0.00 0.00 37.95 4.68
2660 2727 0.733150 GTTGGCAATCCTCCGTAAGC 59.267 55.000 1.92 0.00 0.00 3.09
2661 2728 2.107950 TGTTGGCAATCCTCCGTAAG 57.892 50.000 1.92 0.00 0.00 2.34
2662 2729 2.570415 TTGTTGGCAATCCTCCGTAA 57.430 45.000 1.92 0.00 0.00 3.18
2663 2730 2.799126 ATTGTTGGCAATCCTCCGTA 57.201 45.000 1.92 0.00 41.08 4.02
2664 2731 1.923356 AATTGTTGGCAATCCTCCGT 58.077 45.000 1.92 0.00 43.89 4.69
2665 2732 3.317603 AAAATTGTTGGCAATCCTCCG 57.682 42.857 1.92 0.00 43.89 4.63
3099 3170 1.802069 GAGAGAAGTCTGGCACCAAC 58.198 55.000 0.00 0.00 30.97 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.