Multiple sequence alignment - TraesCS1D01G306600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G306600 chr1D 100.000 5209 0 0 1 5209 403560429 403555221 0.000000e+00 9620.0
1 TraesCS1D01G306600 chr1A 89.223 2895 189 60 386 3210 498806101 498803260 0.000000e+00 3504.0
2 TraesCS1D01G306600 chr1A 90.593 1063 76 16 3860 4898 498802828 498801766 0.000000e+00 1387.0
3 TraesCS1D01G306600 chr1A 83.316 989 122 17 4251 5207 498799178 498798201 0.000000e+00 872.0
4 TraesCS1D01G306600 chr1A 90.728 302 20 4 3486 3779 498803134 498802833 3.780000e-106 396.0
5 TraesCS1D01G306600 chr1A 95.238 231 10 1 63 293 498806338 498806109 1.070000e-96 364.0
6 TraesCS1D01G306600 chr1A 88.814 295 30 2 4902 5196 498800908 498800617 4.960000e-95 359.0
7 TraesCS1D01G306600 chr1A 97.778 45 1 0 16 60 498806496 498806452 1.560000e-10 78.7
8 TraesCS1D01G306600 chr1B 88.922 2383 162 47 304 2622 542925791 542923447 0.000000e+00 2844.0
9 TraesCS1D01G306600 chr1B 91.839 772 29 15 2675 3418 542923451 542922686 0.000000e+00 1046.0
10 TraesCS1D01G306600 chr1B 90.520 538 27 11 3860 4396 542922231 542921717 0.000000e+00 689.0
11 TraesCS1D01G306600 chr1B 89.600 375 31 3 3413 3779 542922610 542922236 2.200000e-128 470.0
12 TraesCS1D01G306600 chr1B 93.143 175 8 2 119 293 542926046 542925876 2.410000e-63 254.0
13 TraesCS1D01G306600 chr1B 83.158 95 16 0 4792 4886 542768992 542769086 2.580000e-13 87.9
14 TraesCS1D01G306600 chr7B 83.333 66 10 1 5024 5089 19941937 19941873 5.630000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G306600 chr1D 403555221 403560429 5208 True 9620.000000 9620 100.000000 1 5209 1 chr1D.!!$R1 5208
1 TraesCS1D01G306600 chr1A 498798201 498806496 8295 True 994.385714 3504 90.812857 16 5207 7 chr1A.!!$R1 5191
2 TraesCS1D01G306600 chr1B 542921717 542926046 4329 True 1060.600000 2844 90.804800 119 4396 5 chr1B.!!$R1 4277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 1210 0.179009 AAGCTGCTCTTTGGTGCTGA 60.179 50.0 1.00 0.00 34.40 4.26 F
1245 1459 0.467474 AGGTATCCATCTCCGACGCA 60.467 55.0 0.00 0.00 0.00 5.24 F
2245 2514 0.100682 GCTCTGCAATGTCAGCATGG 59.899 55.0 0.00 0.00 41.82 3.66 F
3525 3934 0.330604 ATTGCTCCTGGTGCAGATGT 59.669 50.0 21.12 8.41 41.71 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2226 2495 0.100682 CCATGCTGACATTGCAGAGC 59.899 55.0 10.89 4.33 44.04 4.09 R
2586 2859 0.250295 TTCAAGGACGAAGGTGCCAG 60.250 55.0 0.00 0.00 34.61 4.85 R
3784 4198 0.041488 GAGATACGCATTGCTGCTGC 60.041 55.0 8.89 8.89 46.65 5.25 R
5178 8884 0.036765 TTGGGTGTACGCCAGATCAC 60.037 55.0 26.20 8.83 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.670027 AGTAGAAAGTACCTGTTCCTCATGAT 59.330 38.462 0.00 0.00 0.00 2.45
60 61 7.244886 TCCTCATGATATCGATTACATGGTT 57.755 36.000 27.76 6.94 40.00 3.67
61 62 7.679783 TCCTCATGATATCGATTACATGGTTT 58.320 34.615 27.76 6.67 40.00 3.27
86 198 4.589216 TTGTTTCCTTGAGCAATCTTGG 57.411 40.909 0.00 0.00 0.00 3.61
108 220 7.938563 TGGTTAGTTTCATGCATAAACAAAC 57.061 32.000 22.46 17.53 38.92 2.93
130 242 4.202673 ACACCCCACTGTTATCTCCATTTT 60.203 41.667 0.00 0.00 0.00 1.82
358 544 2.877708 GCTATAGCTGATTTGGAGGGCC 60.878 54.545 17.75 0.00 38.21 5.80
507 698 4.757149 GTGAAGACCAAGTCAAAGTAGCAT 59.243 41.667 0.00 0.00 34.60 3.79
549 744 2.151202 ACCAGGTCAACACAATTAGCG 58.849 47.619 0.00 0.00 0.00 4.26
590 785 0.725686 CTGCTCTTGTCATCTTGCCG 59.274 55.000 0.00 0.00 0.00 5.69
637 832 3.258123 TGAGTTTATTCCCTTTTGCTGGC 59.742 43.478 0.00 0.00 0.00 4.85
677 872 0.684535 TTCTGCCGTCACAATCTCCA 59.315 50.000 0.00 0.00 0.00 3.86
692 888 2.033602 CCAACACCCCCTCCGTTC 59.966 66.667 0.00 0.00 0.00 3.95
710 906 5.127194 TCCGTTCTGCTCTCTGTATAATTGT 59.873 40.000 0.00 0.00 0.00 2.71
715 911 7.117285 TCTGCTCTCTGTATAATTGTCACAT 57.883 36.000 0.00 0.00 0.00 3.21
716 912 8.237811 TCTGCTCTCTGTATAATTGTCACATA 57.762 34.615 0.00 0.00 0.00 2.29
718 914 7.436933 TGCTCTCTGTATAATTGTCACATAGG 58.563 38.462 0.00 0.00 0.00 2.57
721 917 7.661968 TCTCTGTATAATTGTCACATAGGAGC 58.338 38.462 0.00 0.00 0.00 4.70
791 987 1.228245 TGCTCTGCTGTTCCCCAAC 60.228 57.895 0.00 0.00 0.00 3.77
802 998 0.845102 TTCCCCAACCTCCCTTCTCC 60.845 60.000 0.00 0.00 0.00 3.71
835 1035 4.283722 ACCTACGATCAGTTTGTTCTTCCT 59.716 41.667 0.00 0.00 0.00 3.36
843 1043 4.588951 TCAGTTTGTTCTTCCTCTAGCAGA 59.411 41.667 0.00 0.00 0.00 4.26
852 1052 1.064611 TCCTCTAGCAGAGCTTACCGT 60.065 52.381 0.00 0.00 40.98 4.83
870 1070 3.375922 ACCGTTTTTCATTTCTCGTGTGT 59.624 39.130 0.00 0.00 0.00 3.72
890 1104 2.281761 CAGGTTCACCGCCAGCTT 60.282 61.111 0.00 0.00 42.08 3.74
908 1122 4.785453 CGGTTGCTCCTGCCCTCC 62.785 72.222 0.00 0.00 38.71 4.30
996 1210 0.179009 AAGCTGCTCTTTGGTGCTGA 60.179 50.000 1.00 0.00 34.40 4.26
1086 1300 3.786635 CGGTTTCTCCATAGTCAGAAGG 58.213 50.000 0.00 0.00 35.57 3.46
1245 1459 0.467474 AGGTATCCATCTCCGACGCA 60.467 55.000 0.00 0.00 0.00 5.24
1254 1468 3.274455 CTCCGACGCACTGCTCACT 62.274 63.158 0.00 0.00 0.00 3.41
1347 1561 3.411418 CTACGAGGATGCGCACGGT 62.411 63.158 14.90 9.10 33.86 4.83
1482 1696 0.473755 TGAAGGCTCTTCACAAGGCA 59.526 50.000 12.03 0.00 41.51 4.75
1713 1927 9.403583 GTTGGGGTGATTCTGTATATTCTTTTA 57.596 33.333 0.00 0.00 0.00 1.52
1731 1945 4.571369 TTTATCCGGGTATGTTGGTCAA 57.429 40.909 0.00 0.00 0.00 3.18
1732 1946 4.781775 TTATCCGGGTATGTTGGTCAAT 57.218 40.909 0.00 0.00 0.00 2.57
1733 1947 2.411628 TCCGGGTATGTTGGTCAATG 57.588 50.000 0.00 0.00 0.00 2.82
1734 1948 1.065053 TCCGGGTATGTTGGTCAATGG 60.065 52.381 0.00 0.00 0.00 3.16
1735 1949 1.340600 CCGGGTATGTTGGTCAATGGT 60.341 52.381 0.00 0.00 0.00 3.55
1736 1950 2.014128 CGGGTATGTTGGTCAATGGTC 58.986 52.381 0.00 0.00 0.00 4.02
1737 1951 2.616765 CGGGTATGTTGGTCAATGGTCA 60.617 50.000 0.00 0.00 0.00 4.02
1771 1991 8.189119 TGTAGTAATTTCCTTGGCTTGATTTT 57.811 30.769 0.00 0.00 0.00 1.82
1904 2130 7.939039 TCTCAACTAACATCTGAGGAAAATGTT 59.061 33.333 0.00 5.42 43.83 2.71
1910 2136 6.814506 ACATCTGAGGAAAATGTTCTCTTG 57.185 37.500 0.00 0.00 33.92 3.02
1915 2141 8.066612 TCTGAGGAAAATGTTCTCTTGTTTTT 57.933 30.769 0.00 0.00 33.92 1.94
1948 2174 1.596603 TGTTGTGCAGTGGTGATCAG 58.403 50.000 0.00 0.00 0.00 2.90
1952 2178 2.247358 TGTGCAGTGGTGATCAGACTA 58.753 47.619 0.00 0.00 0.00 2.59
1960 2187 4.593206 AGTGGTGATCAGACTAGTTTGGAA 59.407 41.667 13.07 0.00 0.00 3.53
1966 2193 8.451748 GGTGATCAGACTAGTTTGGAATTTTAC 58.548 37.037 13.07 4.22 0.00 2.01
1971 2198 7.444183 TCAGACTAGTTTGGAATTTTACTGTGG 59.556 37.037 13.07 0.00 0.00 4.17
2003 2230 4.322198 GGGAAAATGTTGTGCAGTGATGAT 60.322 41.667 0.00 0.00 0.00 2.45
2029 2256 5.738118 ATTGGTTTGAAAATGTTGTGCAG 57.262 34.783 0.00 0.00 0.00 4.41
2066 2307 9.250624 GTTAGTATTTCTACAACCAGCTATGAG 57.749 37.037 0.00 0.00 0.00 2.90
2072 2313 5.907207 TCTACAACCAGCTATGAGAATGTC 58.093 41.667 0.00 0.00 0.00 3.06
2083 2324 5.693555 GCTATGAGAATGTCGATTGATCACA 59.306 40.000 0.00 0.00 0.00 3.58
2109 2350 3.139077 CACACTTGTAGTTGGAAGGGAC 58.861 50.000 0.00 0.00 0.00 4.46
2128 2393 7.277174 AGGGACTTAAATCAGTTTCACTTTG 57.723 36.000 0.00 0.00 27.25 2.77
2148 2413 6.265196 ACTTTGCTTATGAAACAGAATCACCA 59.735 34.615 0.00 0.00 0.00 4.17
2165 2430 4.071423 TCACCATGCCCGTGAATATAATG 58.929 43.478 1.31 0.00 37.31 1.90
2194 2462 6.094464 AGGTTTAAGTTTTGTACACGCTCTTT 59.906 34.615 0.00 0.00 0.00 2.52
2195 2463 7.280652 AGGTTTAAGTTTTGTACACGCTCTTTA 59.719 33.333 0.00 0.00 0.00 1.85
2196 2464 8.071967 GGTTTAAGTTTTGTACACGCTCTTTAT 58.928 33.333 0.00 0.00 0.00 1.40
2226 2495 2.309528 TGGGTGAGGAATTCGATTCG 57.690 50.000 0.00 0.00 40.17 3.34
2235 2504 2.289002 GGAATTCGATTCGCTCTGCAAT 59.711 45.455 0.00 0.00 40.17 3.56
2238 2507 1.280982 TCGATTCGCTCTGCAATGTC 58.719 50.000 0.00 0.00 0.00 3.06
2245 2514 0.100682 GCTCTGCAATGTCAGCATGG 59.899 55.000 0.00 0.00 41.82 3.66
2270 2539 1.517242 CACCTTCTGTCAGCTGGTTC 58.483 55.000 15.13 5.73 0.00 3.62
2338 2607 9.414295 TCATTGCTGAATTTTATTCTTCTGTTG 57.586 29.630 0.00 0.00 0.00 3.33
2345 2614 9.883142 TGAATTTTATTCTTCTGTTGGTTGTTT 57.117 25.926 0.00 0.00 0.00 2.83
2360 2629 3.552068 GGTTGTTTCCACTTGAATTCCGG 60.552 47.826 2.27 0.00 31.67 5.14
2401 2671 1.970640 GTTCCAAACTTCCAATGGGCT 59.029 47.619 0.00 0.00 34.89 5.19
2427 2697 7.275920 AGTTTCTTTGAGATGTGTAAGTCAGT 58.724 34.615 0.00 0.00 0.00 3.41
2428 2698 8.421784 AGTTTCTTTGAGATGTGTAAGTCAGTA 58.578 33.333 0.00 0.00 0.00 2.74
2429 2699 8.488764 GTTTCTTTGAGATGTGTAAGTCAGTAC 58.511 37.037 0.00 0.00 0.00 2.73
2449 2719 6.016610 CAGTACTAGCTAACTGGAGATTCCTC 60.017 46.154 15.17 0.00 39.55 3.71
2468 2738 3.678072 CCTCTGAGCATGCAAACAAAATG 59.322 43.478 21.98 5.49 0.00 2.32
2490 2760 8.738645 AATGTTTTCTTACAAGAGACAAGAGT 57.261 30.769 11.71 0.00 36.87 3.24
2491 2761 9.832445 AATGTTTTCTTACAAGAGACAAGAGTA 57.168 29.630 11.71 0.00 36.87 2.59
2492 2762 8.644318 TGTTTTCTTACAAGAGACAAGAGTAC 57.356 34.615 7.42 0.00 36.22 2.73
2494 2764 8.541312 GTTTTCTTACAAGAGACAAGAGTACAC 58.459 37.037 0.00 0.00 36.22 2.90
2495 2765 6.328641 TCTTACAAGAGACAAGAGTACACC 57.671 41.667 0.00 0.00 0.00 4.16
2496 2766 5.243283 TCTTACAAGAGACAAGAGTACACCC 59.757 44.000 0.00 0.00 0.00 4.61
2499 2769 4.058817 CAAGAGACAAGAGTACACCCAAC 58.941 47.826 0.00 0.00 0.00 3.77
2501 2771 3.069729 AGAGACAAGAGTACACCCAACAC 59.930 47.826 0.00 0.00 0.00 3.32
2502 2772 2.769663 AGACAAGAGTACACCCAACACA 59.230 45.455 0.00 0.00 0.00 3.72
2505 2775 3.275143 CAAGAGTACACCCAACACACAA 58.725 45.455 0.00 0.00 0.00 3.33
2506 2776 3.194005 AGAGTACACCCAACACACAAG 57.806 47.619 0.00 0.00 0.00 3.16
2518 2788 2.715046 ACACACAAGCTATGGATGTGG 58.285 47.619 17.43 10.12 46.67 4.17
2519 2789 2.040278 ACACACAAGCTATGGATGTGGT 59.960 45.455 17.43 10.63 46.67 4.16
2551 2824 3.867216 GCGGGTATTATGATGTGGGGTAC 60.867 52.174 0.00 0.00 0.00 3.34
2557 2830 5.930209 ATTATGATGTGGGGTACTTGGAT 57.070 39.130 0.00 0.00 0.00 3.41
2558 2831 5.725551 TTATGATGTGGGGTACTTGGATT 57.274 39.130 0.00 0.00 0.00 3.01
2570 2843 6.379988 GGGGTACTTGGATTTTGTGTCATAAT 59.620 38.462 0.00 0.00 0.00 1.28
2584 2857 6.548321 TGTGTCATAATCCACTAAAAAGGGT 58.452 36.000 0.00 0.00 32.76 4.34
2586 2859 7.608761 TGTGTCATAATCCACTAAAAAGGGTAC 59.391 37.037 0.00 0.00 32.76 3.34
2589 2862 7.282450 GTCATAATCCACTAAAAAGGGTACTGG 59.718 40.741 0.00 0.00 0.00 4.00
2596 2869 2.287977 AAAAGGGTACTGGCACCTTC 57.712 50.000 7.49 0.00 43.49 3.46
2600 2875 1.079336 GGTACTGGCACCTTCGTCC 60.079 63.158 0.00 0.00 35.55 4.79
2608 2883 1.339151 GGCACCTTCGTCCTTGAAGAT 60.339 52.381 5.12 0.00 46.64 2.40
2618 2893 3.617263 CGTCCTTGAAGATTTAAGTCCCG 59.383 47.826 0.00 0.00 0.00 5.14
2631 2906 7.991460 AGATTTAAGTCCCGAAAACTAATAGGG 59.009 37.037 0.00 0.00 43.32 3.53
2632 2907 6.625532 TTAAGTCCCGAAAACTAATAGGGT 57.374 37.500 0.00 0.00 42.57 4.34
2633 2908 4.482952 AGTCCCGAAAACTAATAGGGTG 57.517 45.455 0.00 0.00 42.57 4.61
2637 2912 4.041938 TCCCGAAAACTAATAGGGTGTGTT 59.958 41.667 0.00 0.00 42.57 3.32
2642 2917 6.854381 CGAAAACTAATAGGGTGTGTTTGAAC 59.146 38.462 0.00 0.00 32.20 3.18
2648 2923 7.994334 ACTAATAGGGTGTGTTTGAACAACTTA 59.006 33.333 0.00 0.00 41.21 2.24
2655 2930 5.511729 GTGTGTTTGAACAACTTAAGCACTC 59.488 40.000 1.29 0.00 41.21 3.51
2686 2961 7.118101 GTCTACACTCTATACGAATACTCCTGG 59.882 44.444 0.00 0.00 0.00 4.45
2694 2969 4.546829 ACGAATACTCCTGGTTGCTTAA 57.453 40.909 0.00 0.00 0.00 1.85
2711 2986 7.339953 GTTGCTTAATTGCTTCAACAAAGAAG 58.660 34.615 0.00 0.00 46.06 2.85
2719 2994 4.326504 CTTCAACAAAGAAGCCACCAAT 57.673 40.909 0.00 0.00 38.64 3.16
2720 2995 4.301628 CTTCAACAAAGAAGCCACCAATC 58.698 43.478 0.00 0.00 38.64 2.67
2721 2996 3.565307 TCAACAAAGAAGCCACCAATCT 58.435 40.909 0.00 0.00 0.00 2.40
2729 3004 2.226962 AGCCACCAATCTTCTTGCAT 57.773 45.000 0.00 0.00 0.00 3.96
2737 3012 4.946157 ACCAATCTTCTTGCATTAGTCAGG 59.054 41.667 0.00 0.00 0.00 3.86
2741 3020 3.055094 TCTTCTTGCATTAGTCAGGGTCC 60.055 47.826 0.00 0.00 0.00 4.46
2753 3032 4.104086 AGTCAGGGTCCAATCTAATGTCA 58.896 43.478 0.00 0.00 0.00 3.58
2762 3041 6.311200 GGTCCAATCTAATGTCATTTGTTTGC 59.689 38.462 17.99 10.17 0.00 3.68
2771 3050 3.119209 TGTCATTTGTTTGCTGTGCTTCA 60.119 39.130 0.00 0.00 0.00 3.02
2800 3079 4.540824 GTGAATTCAGTTTTCAGGAGCAC 58.459 43.478 8.80 0.00 33.95 4.40
2857 3136 4.315803 TGATTTCCAGTCTTCTTTCCGTC 58.684 43.478 0.00 0.00 0.00 4.79
2897 3176 1.153745 GCAAGCGATGTCCGTCTCT 60.154 57.895 0.00 0.00 41.15 3.10
3021 3312 2.310309 CGCCAAGCAAGATCGCATA 58.690 52.632 0.00 0.00 0.00 3.14
3226 3519 2.216898 GAGTTAGCTGCTATGGGCTTG 58.783 52.381 10.64 0.00 42.39 4.01
3324 3639 7.862372 ACTATTGTTAATTTGTGAACACAGCAG 59.138 33.333 7.67 0.00 42.94 4.24
3439 3835 1.745232 AGGAACTTGCACACAACGAA 58.255 45.000 0.00 0.00 27.25 3.85
3442 3838 3.042887 GGAACTTGCACACAACGAATTC 58.957 45.455 0.00 0.00 0.00 2.17
3453 3849 6.128391 GCACACAACGAATTCTAAAGGATGTA 60.128 38.462 3.52 0.00 0.00 2.29
3525 3934 0.330604 ATTGCTCCTGGTGCAGATGT 59.669 50.000 21.12 8.41 41.71 3.06
3591 4000 4.012374 TGAAAGCAATGAAGATGGACTCC 58.988 43.478 0.00 0.00 0.00 3.85
3615 4024 0.394488 TCCCTCTAGCTCCTCGTGTG 60.394 60.000 0.00 0.00 0.00 3.82
3706 4115 3.998672 GGAACTCGCGGGGTGACA 61.999 66.667 12.42 0.00 0.00 3.58
3708 4117 1.375523 GAACTCGCGGGGTGACAAT 60.376 57.895 12.42 0.00 0.00 2.71
3714 4123 2.109126 GCGGGGTGACAATGCTCTC 61.109 63.158 0.00 0.00 0.00 3.20
3717 4126 1.596934 GGGTGACAATGCTCTCCGA 59.403 57.895 0.00 0.00 0.00 4.55
3735 4144 2.289444 CCGACTCTGCTTCCAGGTAAAA 60.289 50.000 0.00 0.00 39.61 1.52
3736 4145 2.996621 CGACTCTGCTTCCAGGTAAAAG 59.003 50.000 0.00 0.00 39.61 2.27
3745 4154 4.686091 GCTTCCAGGTAAAAGCAAAATCAC 59.314 41.667 6.50 0.00 45.67 3.06
3754 4163 1.882912 AGCAAAATCACTGCGACTCA 58.117 45.000 0.00 0.00 44.75 3.41
3778 4192 7.913674 AAGAAGGTTCTTGTAATGATCTGAC 57.086 36.000 4.13 0.00 45.27 3.51
3779 4193 7.009179 AGAAGGTTCTTGTAATGATCTGACA 57.991 36.000 0.00 0.00 32.55 3.58
3780 4194 7.102346 AGAAGGTTCTTGTAATGATCTGACAG 58.898 38.462 0.00 0.00 32.55 3.51
3781 4195 6.611613 AGGTTCTTGTAATGATCTGACAGA 57.388 37.500 7.80 7.80 0.00 3.41
3782 4196 7.192852 AGGTTCTTGTAATGATCTGACAGAT 57.807 36.000 17.98 17.98 37.73 2.90
3783 4197 7.628234 AGGTTCTTGTAATGATCTGACAGATT 58.372 34.615 18.89 7.17 34.53 2.40
3784 4198 7.551974 AGGTTCTTGTAATGATCTGACAGATTG 59.448 37.037 18.89 3.70 34.53 2.67
3785 4199 6.915544 TCTTGTAATGATCTGACAGATTGC 57.084 37.500 18.89 8.62 34.53 3.56
3786 4200 6.408869 TCTTGTAATGATCTGACAGATTGCA 58.591 36.000 18.89 13.37 34.53 4.08
3787 4201 6.537660 TCTTGTAATGATCTGACAGATTGCAG 59.462 38.462 18.89 8.75 34.53 4.41
3788 4202 4.573607 TGTAATGATCTGACAGATTGCAGC 59.426 41.667 18.89 6.76 34.53 5.25
3789 4203 2.773993 TGATCTGACAGATTGCAGCA 57.226 45.000 18.89 9.23 34.53 4.41
3790 4204 2.629051 TGATCTGACAGATTGCAGCAG 58.371 47.619 18.89 0.00 34.53 4.24
3791 4205 1.331138 GATCTGACAGATTGCAGCAGC 59.669 52.381 18.89 0.00 34.53 5.25
3801 4215 4.603216 GCAGCAGCAATGCGTATC 57.397 55.556 0.00 0.00 41.58 2.24
3802 4216 2.020131 GCAGCAGCAATGCGTATCT 58.980 52.632 0.00 0.00 41.58 1.98
3803 4217 0.041488 GCAGCAGCAATGCGTATCTC 60.041 55.000 0.00 0.00 41.58 2.75
3804 4218 1.292992 CAGCAGCAATGCGTATCTCA 58.707 50.000 0.00 0.00 40.27 3.27
3805 4219 1.667212 CAGCAGCAATGCGTATCTCAA 59.333 47.619 0.00 0.00 40.27 3.02
3806 4220 2.289820 CAGCAGCAATGCGTATCTCAAT 59.710 45.455 0.00 0.00 40.27 2.57
3807 4221 3.495753 CAGCAGCAATGCGTATCTCAATA 59.504 43.478 0.00 0.00 40.27 1.90
3808 4222 3.744942 AGCAGCAATGCGTATCTCAATAG 59.255 43.478 0.00 0.00 40.27 1.73
3809 4223 3.742882 GCAGCAATGCGTATCTCAATAGA 59.257 43.478 0.00 0.00 35.80 1.98
3810 4224 4.391216 GCAGCAATGCGTATCTCAATAGAT 59.609 41.667 0.00 0.00 44.80 1.98
3811 4225 5.106791 GCAGCAATGCGTATCTCAATAGATT 60.107 40.000 0.00 0.00 39.55 2.40
3812 4226 6.091305 GCAGCAATGCGTATCTCAATAGATTA 59.909 38.462 0.00 0.00 39.55 1.75
3813 4227 7.201591 GCAGCAATGCGTATCTCAATAGATTAT 60.202 37.037 0.00 0.00 39.55 1.28
3814 4228 8.663025 CAGCAATGCGTATCTCAATAGATTATT 58.337 33.333 0.00 0.00 39.55 1.40
3815 4229 9.875691 AGCAATGCGTATCTCAATAGATTATTA 57.124 29.630 0.00 0.00 39.55 0.98
3838 4252 9.906660 ATTAAATTTTCACAAGACGCTATTCAA 57.093 25.926 0.00 0.00 0.00 2.69
3839 4253 7.623268 AAATTTTCACAAGACGCTATTCAAC 57.377 32.000 0.00 0.00 0.00 3.18
3840 4254 5.743026 TTTTCACAAGACGCTATTCAACA 57.257 34.783 0.00 0.00 0.00 3.33
3841 4255 5.940192 TTTCACAAGACGCTATTCAACAT 57.060 34.783 0.00 0.00 0.00 2.71
3842 4256 5.530519 TTCACAAGACGCTATTCAACATC 57.469 39.130 0.00 0.00 0.00 3.06
3843 4257 4.820897 TCACAAGACGCTATTCAACATCT 58.179 39.130 0.00 0.00 0.00 2.90
3844 4258 4.627035 TCACAAGACGCTATTCAACATCTG 59.373 41.667 0.00 0.00 0.00 2.90
3845 4259 4.627035 CACAAGACGCTATTCAACATCTGA 59.373 41.667 0.00 0.00 0.00 3.27
3846 4260 4.627467 ACAAGACGCTATTCAACATCTGAC 59.373 41.667 0.00 0.00 32.21 3.51
3847 4261 4.727507 AGACGCTATTCAACATCTGACT 57.272 40.909 0.00 0.00 32.21 3.41
3848 4262 4.428209 AGACGCTATTCAACATCTGACTG 58.572 43.478 0.00 0.00 32.21 3.51
3849 4263 4.158579 AGACGCTATTCAACATCTGACTGA 59.841 41.667 0.00 0.00 32.21 3.41
3850 4264 4.820897 ACGCTATTCAACATCTGACTGAA 58.179 39.130 2.35 2.35 32.21 3.02
3851 4265 5.237815 ACGCTATTCAACATCTGACTGAAA 58.762 37.500 3.63 0.00 33.08 2.69
3852 4266 5.700832 ACGCTATTCAACATCTGACTGAAAA 59.299 36.000 3.63 0.00 33.08 2.29
3853 4267 6.017933 CGCTATTCAACATCTGACTGAAAAC 58.982 40.000 3.63 0.00 33.08 2.43
3854 4268 6.347644 CGCTATTCAACATCTGACTGAAAACA 60.348 38.462 3.63 0.00 33.08 2.83
3855 4269 6.798959 GCTATTCAACATCTGACTGAAAACAC 59.201 38.462 3.63 0.00 33.08 3.32
3856 4270 4.794248 TCAACATCTGACTGAAAACACG 57.206 40.909 0.00 0.00 0.00 4.49
3857 4271 4.438148 TCAACATCTGACTGAAAACACGA 58.562 39.130 0.00 0.00 0.00 4.35
3858 4272 5.056480 TCAACATCTGACTGAAAACACGAT 58.944 37.500 0.00 0.00 0.00 3.73
3867 4281 5.693104 TGACTGAAAACACGATAACACTACC 59.307 40.000 0.00 0.00 0.00 3.18
3868 4282 5.603596 ACTGAAAACACGATAACACTACCA 58.396 37.500 0.00 0.00 0.00 3.25
3880 4294 8.421784 ACGATAACACTACCATTTCAGATGTAT 58.578 33.333 0.00 0.00 0.00 2.29
4006 4420 6.201517 AGATCAAATTGTTGTTCTGAACACG 58.798 36.000 21.95 6.05 40.65 4.49
4023 4440 0.593128 ACGAAGTTGCTGTGATTGGC 59.407 50.000 0.00 0.00 37.78 4.52
4193 4610 2.107953 GTCCTCTCATCCCTGCGC 59.892 66.667 0.00 0.00 0.00 6.09
4226 4644 3.645687 AGTAGGCTTCTCCATTCAGATCC 59.354 47.826 0.00 0.00 37.29 3.36
4318 4737 3.319972 GGGAAGGGGAACAAAAACAGTAC 59.680 47.826 0.00 0.00 0.00 2.73
4344 4763 1.749153 CGCCGTTTGTGGTTAAACAG 58.251 50.000 0.00 0.00 39.84 3.16
4405 4825 0.325933 CATCTGGTCTGGTGCCTGAA 59.674 55.000 0.00 0.00 37.48 3.02
4427 4847 0.250295 CGTTCTTCAACCTCCAGCCA 60.250 55.000 0.00 0.00 0.00 4.75
4428 4848 1.239347 GTTCTTCAACCTCCAGCCAC 58.761 55.000 0.00 0.00 0.00 5.01
4429 4849 0.110486 TTCTTCAACCTCCAGCCACC 59.890 55.000 0.00 0.00 0.00 4.61
4430 4850 0.768221 TCTTCAACCTCCAGCCACCT 60.768 55.000 0.00 0.00 0.00 4.00
4457 4877 2.294791 CTGGTCTACCTTCTAGCATCGG 59.705 54.545 0.02 0.00 36.82 4.18
4459 4879 1.000052 GTCTACCTTCTAGCATCGGCC 60.000 57.143 0.00 0.00 42.56 6.13
4460 4880 0.039074 CTACCTTCTAGCATCGGCCG 60.039 60.000 22.12 22.12 42.56 6.13
4461 4881 2.083835 TACCTTCTAGCATCGGCCGC 62.084 60.000 23.51 6.64 42.56 6.53
4462 4882 2.663188 CTTCTAGCATCGGCCGCC 60.663 66.667 23.51 11.44 42.56 6.13
4463 4883 3.154473 TTCTAGCATCGGCCGCCT 61.154 61.111 23.51 18.43 42.56 5.52
4464 4884 3.151958 TTCTAGCATCGGCCGCCTC 62.152 63.158 23.51 11.40 42.56 4.70
4465 4885 4.671569 CTAGCATCGGCCGCCTCC 62.672 72.222 23.51 8.61 42.56 4.30
4486 4906 3.386237 GACCACCTCGCTGCCTCT 61.386 66.667 0.00 0.00 0.00 3.69
4509 4945 1.448540 CTCGTTCTGATGCCGCCTT 60.449 57.895 0.00 0.00 0.00 4.35
4522 4958 1.472662 CCGCCTTCGACCATCCCTAT 61.473 60.000 0.00 0.00 38.10 2.57
4526 4962 3.400255 GCCTTCGACCATCCCTATAAAC 58.600 50.000 0.00 0.00 0.00 2.01
4543 4979 0.677842 AACCTGTACACCGACCAGAC 59.322 55.000 0.00 0.00 0.00 3.51
4576 5012 3.020237 GCACCCTCTCCTTCGACCC 62.020 68.421 0.00 0.00 0.00 4.46
4581 5017 0.466555 CCTCTCCTTCGACCCGAGAT 60.467 60.000 5.90 0.00 37.14 2.75
4598 5034 1.483424 GATGTCGCGGCTTACTCTGC 61.483 60.000 13.81 0.00 35.08 4.26
4625 5061 2.389715 CTCCGACCATCCCTCTAAACT 58.610 52.381 0.00 0.00 0.00 2.66
4628 5064 2.280628 CGACCATCCCTCTAAACTTGC 58.719 52.381 0.00 0.00 0.00 4.01
4630 5066 3.686016 GACCATCCCTCTAAACTTGCAA 58.314 45.455 0.00 0.00 0.00 4.08
4635 5071 1.271163 CCCTCTAAACTTGCAACCCGA 60.271 52.381 0.00 0.00 0.00 5.14
4645 5081 2.787473 TGCAACCCGATCAGATTTCT 57.213 45.000 0.00 0.00 0.00 2.52
4688 5124 0.402887 TCCTCGACCCACACTAGTCA 59.597 55.000 0.00 0.00 33.08 3.41
4692 5128 2.755655 CTCGACCCACACTAGTCAATCT 59.244 50.000 0.00 0.00 33.08 2.40
4719 5155 3.691342 CCTCCGCTTGGGACGTCA 61.691 66.667 18.91 0.00 40.94 4.35
4720 5156 2.432628 CTCCGCTTGGGACGTCAC 60.433 66.667 18.91 15.66 40.94 3.67
4721 5157 3.220999 CTCCGCTTGGGACGTCACA 62.221 63.158 18.52 18.52 40.94 3.58
4722 5158 2.280524 CCGCTTGGGACGTCACAA 60.281 61.111 30.10 30.10 36.83 3.33
4732 5179 1.000955 GGACGTCACAACTCAGACCAT 59.999 52.381 18.91 0.00 0.00 3.55
4735 5182 1.673033 CGTCACAACTCAGACCATCCC 60.673 57.143 0.00 0.00 0.00 3.85
4743 5190 3.108376 ACTCAGACCATCCCTCTAAACC 58.892 50.000 0.00 0.00 0.00 3.27
4748 5195 1.282157 ACCATCCCTCTAAACCTGCAC 59.718 52.381 0.00 0.00 0.00 4.57
4765 5212 1.728971 GCACTGTGACCAGATTTCTCG 59.271 52.381 12.86 0.00 41.50 4.04
4768 5215 2.028930 ACTGTGACCAGATTTCTCGGAC 60.029 50.000 0.00 0.00 41.50 4.79
4771 5218 2.100197 TGACCAGATTTCTCGGACGAT 58.900 47.619 0.00 0.00 0.00 3.73
4775 5222 2.464865 CAGATTTCTCGGACGATCCAC 58.535 52.381 0.00 0.00 35.91 4.02
4781 5228 4.157120 CGGACGATCCACACCCCC 62.157 72.222 0.00 0.00 35.91 5.40
4790 5237 2.356780 CCACACCCCCTACCTCGAC 61.357 68.421 0.00 0.00 0.00 4.20
4848 5295 1.442769 CTCCCTTCGACAACACATGG 58.557 55.000 0.00 0.00 0.00 3.66
4851 5298 1.586154 CCTTCGACAACACATGGGCC 61.586 60.000 0.00 0.00 0.00 5.80
4854 5301 3.061848 GACAACACATGGGCCGGG 61.062 66.667 2.18 0.00 0.00 5.73
4877 5324 1.214589 GGTGTACGCCACATCGAGT 59.785 57.895 20.74 0.00 46.44 4.18
4898 5345 5.605534 AGTGATGCTTGCTATAAGTACCAG 58.394 41.667 0.00 0.00 0.00 4.00
4899 5346 4.752101 GTGATGCTTGCTATAAGTACCAGG 59.248 45.833 0.00 0.00 0.00 4.45
4900 5347 4.653801 TGATGCTTGCTATAAGTACCAGGA 59.346 41.667 0.00 0.00 0.00 3.86
4912 6213 2.299297 AGTACCAGGAAAGGAGACAACG 59.701 50.000 0.00 0.00 0.00 4.10
4913 6214 1.129058 ACCAGGAAAGGAGACAACGT 58.871 50.000 0.00 0.00 0.00 3.99
4915 6216 2.036862 ACCAGGAAAGGAGACAACGTAC 59.963 50.000 0.00 0.00 0.00 3.67
4917 6218 3.493699 CCAGGAAAGGAGACAACGTACAA 60.494 47.826 0.00 0.00 0.00 2.41
4946 6247 0.169009 GCTTGGATCAGAACGGCAAC 59.831 55.000 0.00 0.00 0.00 4.17
4958 6259 3.909662 GGCAACGGCATGACATCT 58.090 55.556 0.00 0.00 43.71 2.90
4964 6265 3.751621 CAACGGCATGACATCTTCTTTC 58.248 45.455 0.00 0.00 0.00 2.62
4996 6297 7.334090 TCTTTCCAAATTGTATCAGAGAGAGG 58.666 38.462 0.00 0.00 0.00 3.69
5010 6311 5.063204 CAGAGAGAGGTAGAGGTGTATCTG 58.937 50.000 0.00 0.00 0.00 2.90
5015 6316 4.228666 AGAGGTAGAGGTGTATCTGTGAGT 59.771 45.833 0.00 0.00 0.00 3.41
5024 6325 7.067615 AGAGGTGTATCTGTGAGTGTAATACAG 59.932 40.741 0.00 0.00 42.34 2.74
5031 6332 6.455647 TCTGTGAGTGTAATACAGAAAGTGG 58.544 40.000 0.00 0.00 45.47 4.00
5057 6358 5.220521 TCCACACCCTAACATCATGGTATA 58.779 41.667 0.00 0.00 0.00 1.47
5078 6379 0.546988 GAGACCACCTACCACCCCTT 60.547 60.000 0.00 0.00 0.00 3.95
5080 6381 0.327259 GACCACCTACCACCCCTTTC 59.673 60.000 0.00 0.00 0.00 2.62
5110 6411 1.093159 GCACTGGAAATCTGGCTCTG 58.907 55.000 0.00 0.00 0.00 3.35
5116 6417 3.114606 TGGAAATCTGGCTCTGATACCA 58.885 45.455 12.06 12.06 31.86 3.25
5123 6424 5.178096 TCTGGCTCTGATACCATTTTCAA 57.822 39.130 0.56 0.00 34.82 2.69
5129 6430 3.631686 TCTGATACCATTTTCAATGCCCG 59.368 43.478 0.00 0.00 0.00 6.13
5153 6454 4.801516 GCTAGTCTTTTCGATGTCTCCTTC 59.198 45.833 0.00 0.00 0.00 3.46
5154 6455 4.873746 AGTCTTTTCGATGTCTCCTTCA 57.126 40.909 0.00 0.00 0.00 3.02
5178 8884 3.244078 TGGTACTTATAGCAAGCATCGGG 60.244 47.826 0.00 0.00 35.87 5.14
5179 8885 3.244112 GGTACTTATAGCAAGCATCGGGT 60.244 47.826 0.00 0.00 0.00 5.28
5183 8889 2.175878 ATAGCAAGCATCGGGTGATC 57.824 50.000 0.00 0.00 30.49 2.92
5193 8899 1.518572 CGGGTGATCTGGCGTACAC 60.519 63.158 0.00 0.00 0.00 2.90
5196 8902 1.594833 GTGATCTGGCGTACACCCA 59.405 57.895 0.00 0.00 0.00 4.51
5197 8903 0.036765 GTGATCTGGCGTACACCCAA 60.037 55.000 0.00 0.00 30.66 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.941919 TCTACTACTAGATGCGATGACAATTT 58.058 34.615 0.00 0.00 0.00 1.82
1 2 7.511959 TCTACTACTAGATGCGATGACAATT 57.488 36.000 0.00 0.00 0.00 2.32
2 3 7.511959 TTCTACTACTAGATGCGATGACAAT 57.488 36.000 0.00 0.00 0.00 2.71
3 4 6.937436 TTCTACTACTAGATGCGATGACAA 57.063 37.500 0.00 0.00 0.00 3.18
4 5 6.542735 ACTTTCTACTACTAGATGCGATGACA 59.457 38.462 0.00 0.00 0.00 3.58
5 6 6.961576 ACTTTCTACTACTAGATGCGATGAC 58.038 40.000 0.00 0.00 0.00 3.06
6 7 7.172875 GGTACTTTCTACTACTAGATGCGATGA 59.827 40.741 0.00 0.00 0.00 2.92
7 8 7.173562 AGGTACTTTCTACTACTAGATGCGATG 59.826 40.741 0.00 0.00 27.25 3.84
8 9 7.173562 CAGGTACTTTCTACTACTAGATGCGAT 59.826 40.741 0.00 0.00 34.60 4.58
9 10 6.482641 CAGGTACTTTCTACTACTAGATGCGA 59.517 42.308 0.00 0.00 34.60 5.10
10 11 6.260493 ACAGGTACTTTCTACTACTAGATGCG 59.740 42.308 0.00 0.00 34.60 4.73
11 12 7.571080 ACAGGTACTTTCTACTACTAGATGC 57.429 40.000 0.00 0.00 34.60 3.91
12 13 8.623030 GGAACAGGTACTTTCTACTACTAGATG 58.377 40.741 0.00 0.00 34.60 2.90
13 14 8.559175 AGGAACAGGTACTTTCTACTACTAGAT 58.441 37.037 0.00 0.00 34.60 1.98
14 15 7.926705 AGGAACAGGTACTTTCTACTACTAGA 58.073 38.462 0.00 0.00 34.60 2.43
45 46 9.834628 GAAACAAAGAAAACCATGTAATCGATA 57.165 29.630 0.00 0.00 0.00 2.92
60 61 6.469782 AGATTGCTCAAGGAAACAAAGAAA 57.530 33.333 0.00 0.00 0.00 2.52
61 62 6.275335 CAAGATTGCTCAAGGAAACAAAGAA 58.725 36.000 0.00 0.00 0.00 2.52
86 198 7.095816 GGGTGTTTGTTTATGCATGAAACTAAC 60.096 37.037 27.34 27.34 45.01 2.34
108 220 3.652057 AATGGAGATAACAGTGGGGTG 57.348 47.619 0.00 0.00 0.00 4.61
130 242 5.556915 ACTACTGGCAATGCTGTACTAAAA 58.443 37.500 4.82 0.00 0.00 1.52
225 337 2.749621 CCACTTTGCAGTTGGTCTATCC 59.250 50.000 2.82 0.00 0.00 2.59
293 405 3.927555 GGACAATTGACCGTCCTCA 57.072 52.632 13.59 0.00 46.83 3.86
297 409 5.622770 AATTTACTGGACAATTGACCGTC 57.377 39.130 19.72 4.09 32.50 4.79
298 410 7.392113 TCATAAATTTACTGGACAATTGACCGT 59.608 33.333 19.72 20.19 32.50 4.83
331 517 2.487805 CCAAATCAGCTATAGCAGGCCA 60.488 50.000 26.07 3.54 45.16 5.36
483 674 3.498777 GCTACTTTGACTTGGTCTTCACC 59.501 47.826 0.00 0.00 44.10 4.02
549 744 4.100808 AGAGCAGATAATGGTTGAGGAGAC 59.899 45.833 0.00 0.00 40.53 3.36
590 785 3.883489 AGGTACTTCCTTTTTGTGCAGAC 59.117 43.478 0.00 0.00 45.67 3.51
637 832 1.270550 GAAAGGGACATGTGCCAACAG 59.729 52.381 34.48 0.00 44.28 3.16
677 872 3.157680 CAGAACGGAGGGGGTGTT 58.842 61.111 0.00 0.00 0.00 3.32
692 888 7.598118 CCTATGTGACAATTATACAGAGAGCAG 59.402 40.741 10.38 0.00 36.13 4.24
715 911 9.032624 GGGACTTGTATATATAAACAGCTCCTA 57.967 37.037 0.00 0.00 0.00 2.94
716 912 7.735321 AGGGACTTGTATATATAAACAGCTCCT 59.265 37.037 0.00 0.29 27.25 3.69
718 914 8.368668 ACAGGGACTTGTATATATAAACAGCTC 58.631 37.037 0.00 0.00 34.60 4.09
721 917 9.698309 CTGACAGGGACTTGTATATATAAACAG 57.302 37.037 0.00 0.00 34.60 3.16
734 930 0.321122 GTGGAGCTGACAGGGACTTG 60.321 60.000 4.26 0.00 34.60 3.16
791 987 1.383803 CTCTGGGGGAGAAGGGAGG 60.384 68.421 0.00 0.00 44.45 4.30
802 998 1.033574 GATCGTAGGTGTCTCTGGGG 58.966 60.000 0.00 0.00 0.00 4.96
835 1035 3.955650 AAAACGGTAAGCTCTGCTAGA 57.044 42.857 0.00 0.00 38.25 2.43
843 1043 4.514066 ACGAGAAATGAAAAACGGTAAGCT 59.486 37.500 0.00 0.00 0.00 3.74
852 1052 5.277779 CCTGCTACACACGAGAAATGAAAAA 60.278 40.000 0.00 0.00 0.00 1.94
870 1070 2.662596 CTGGCGGTGAACCTGCTA 59.337 61.111 13.39 8.50 36.36 3.49
889 1103 3.249189 AGGGCAGGAGCAACCGAA 61.249 61.111 0.00 0.00 44.61 4.30
890 1104 3.706373 GAGGGCAGGAGCAACCGA 61.706 66.667 0.00 0.00 44.61 4.69
996 1210 7.624360 TCTACTTTCAGTTGTTGACATTGTT 57.376 32.000 0.00 0.00 34.94 2.83
1017 1231 0.322277 AGTCGTCGGACAGCCTTCTA 60.322 55.000 9.10 0.00 45.92 2.10
1086 1300 1.002430 TCATCAGACTTGCTCACACCC 59.998 52.381 0.00 0.00 0.00 4.61
1158 1372 3.482232 CTGCATCCCCATCCCCGTC 62.482 68.421 0.00 0.00 0.00 4.79
1159 1373 3.492353 CTGCATCCCCATCCCCGT 61.492 66.667 0.00 0.00 0.00 5.28
1160 1374 4.962836 GCTGCATCCCCATCCCCG 62.963 72.222 0.00 0.00 0.00 5.73
1161 1375 3.804638 CTGCTGCATCCCCATCCCC 62.805 68.421 1.31 0.00 0.00 4.81
1162 1376 2.203451 CTGCTGCATCCCCATCCC 60.203 66.667 1.31 0.00 0.00 3.85
1163 1377 2.203451 CCTGCTGCATCCCCATCC 60.203 66.667 1.31 0.00 0.00 3.51
1245 1459 4.021894 ACAAGAATCTCGTTAGTGAGCAGT 60.022 41.667 0.00 0.00 35.90 4.40
1254 1468 5.163509 CCTCCTCATGACAAGAATCTCGTTA 60.164 44.000 0.00 0.00 0.00 3.18
1347 1561 2.596338 TCGAGGACGAGGTGCACA 60.596 61.111 20.43 0.00 43.81 4.57
1482 1696 5.241403 TCAAGTCCCTGTGTATGATGTTT 57.759 39.130 0.00 0.00 0.00 2.83
1713 1927 2.422803 CCATTGACCAACATACCCGGAT 60.423 50.000 0.73 0.00 0.00 4.18
1731 1945 6.814954 ATTACTACAAGACAGGATGACCAT 57.185 37.500 0.00 0.00 39.69 3.55
1732 1946 6.620877 AATTACTACAAGACAGGATGACCA 57.379 37.500 0.00 0.00 39.69 4.02
1733 1947 6.539103 GGAAATTACTACAAGACAGGATGACC 59.461 42.308 0.00 0.00 39.69 4.02
1734 1948 7.331791 AGGAAATTACTACAAGACAGGATGAC 58.668 38.462 0.00 0.00 39.69 3.06
1735 1949 7.496346 AGGAAATTACTACAAGACAGGATGA 57.504 36.000 0.00 0.00 39.69 2.92
1736 1950 7.066284 CCAAGGAAATTACTACAAGACAGGATG 59.934 40.741 0.00 0.00 46.00 3.51
1737 1951 7.112779 CCAAGGAAATTACTACAAGACAGGAT 58.887 38.462 0.00 0.00 0.00 3.24
1915 2141 4.836825 TGCACAACATTTTCCTTTTCCAA 58.163 34.783 0.00 0.00 0.00 3.53
1916 2142 4.081198 ACTGCACAACATTTTCCTTTTCCA 60.081 37.500 0.00 0.00 0.00 3.53
1918 2144 4.270808 CCACTGCACAACATTTTCCTTTTC 59.729 41.667 0.00 0.00 0.00 2.29
1922 2148 2.101249 CACCACTGCACAACATTTTCCT 59.899 45.455 0.00 0.00 0.00 3.36
1933 2159 2.232452 ACTAGTCTGATCACCACTGCAC 59.768 50.000 11.41 0.00 0.00 4.57
1948 2174 7.506328 ACCACAGTAAAATTCCAAACTAGTC 57.494 36.000 0.00 0.00 0.00 2.59
1952 2178 6.783708 TGAACCACAGTAAAATTCCAAACT 57.216 33.333 0.00 0.00 0.00 2.66
1960 2187 6.086011 TCCCCATATGAACCACAGTAAAAT 57.914 37.500 3.65 0.00 0.00 1.82
1966 2193 4.711355 ACATTTTCCCCATATGAACCACAG 59.289 41.667 3.65 0.00 0.00 3.66
1971 2198 4.869861 GCACAACATTTTCCCCATATGAAC 59.130 41.667 3.65 0.00 0.00 3.18
2066 2307 5.961843 GTGTCAATGTGATCAATCGACATTC 59.038 40.000 16.77 6.35 36.91 2.67
2072 2313 4.934075 AGTGTGTCAATGTGATCAATCG 57.066 40.909 0.00 0.00 0.00 3.34
2083 2324 4.821805 CCTTCCAACTACAAGTGTGTCAAT 59.178 41.667 0.00 0.00 39.30 2.57
2123 2364 6.265196 TGGTGATTCTGTTTCATAAGCAAAGT 59.735 34.615 0.00 0.00 0.00 2.66
2128 2393 5.039333 GCATGGTGATTCTGTTTCATAAGC 58.961 41.667 0.00 0.00 0.00 3.09
2148 2413 4.761739 CCTCAACATTATATTCACGGGCAT 59.238 41.667 0.00 0.00 0.00 4.40
2165 2430 5.453266 GCGTGTACAAAACTTAAACCTCAAC 59.547 40.000 0.00 0.00 0.00 3.18
2195 2463 9.231297 CGAATTCCTCACCCATAATTTATACAT 57.769 33.333 0.00 0.00 0.00 2.29
2196 2464 8.433599 TCGAATTCCTCACCCATAATTTATACA 58.566 33.333 0.00 0.00 0.00 2.29
2216 2484 2.679837 ACATTGCAGAGCGAATCGAATT 59.320 40.909 6.91 0.00 0.00 2.17
2220 2488 1.001624 TGACATTGCAGAGCGAATCG 58.998 50.000 0.00 0.00 0.00 3.34
2226 2495 0.100682 CCATGCTGACATTGCAGAGC 59.899 55.000 10.89 4.33 44.04 4.09
2235 2504 1.073025 GTGGACACCCATGCTGACA 59.927 57.895 0.00 0.00 45.68 3.58
2270 2539 3.941483 ACTATTCAAGGTCAATTGCTCCG 59.059 43.478 0.00 0.00 0.00 4.63
2338 2607 3.552068 CCGGAATTCAAGTGGAAACAACC 60.552 47.826 7.93 0.00 46.06 3.77
2345 2614 2.882137 GACAAACCGGAATTCAAGTGGA 59.118 45.455 9.46 0.00 0.00 4.02
2360 2629 6.092807 GGAACTGGACATCAGATAAGACAAAC 59.907 42.308 0.00 0.00 46.18 2.93
2401 2671 8.421784 ACTGACTTACACATCTCAAAGAAACTA 58.578 33.333 0.00 0.00 0.00 2.24
2427 2697 6.065374 CAGAGGAATCTCCAGTTAGCTAGTA 58.935 44.000 0.00 0.00 39.61 1.82
2428 2698 4.892934 CAGAGGAATCTCCAGTTAGCTAGT 59.107 45.833 0.00 0.00 39.61 2.57
2429 2699 5.136828 TCAGAGGAATCTCCAGTTAGCTAG 58.863 45.833 0.00 0.00 39.61 3.42
2468 2738 8.541312 GTGTACTCTTGTCTCTTGTAAGAAAAC 58.459 37.037 0.00 0.00 34.03 2.43
2474 2744 4.897076 TGGGTGTACTCTTGTCTCTTGTAA 59.103 41.667 0.00 0.00 0.00 2.41
2475 2745 4.476297 TGGGTGTACTCTTGTCTCTTGTA 58.524 43.478 0.00 0.00 0.00 2.41
2476 2746 3.305720 TGGGTGTACTCTTGTCTCTTGT 58.694 45.455 0.00 0.00 0.00 3.16
2477 2747 4.058817 GTTGGGTGTACTCTTGTCTCTTG 58.941 47.826 0.00 0.00 0.00 3.02
2478 2748 3.709653 TGTTGGGTGTACTCTTGTCTCTT 59.290 43.478 0.00 0.00 0.00 2.85
2479 2749 3.069729 GTGTTGGGTGTACTCTTGTCTCT 59.930 47.826 0.00 0.00 0.00 3.10
2480 2750 3.181469 TGTGTTGGGTGTACTCTTGTCTC 60.181 47.826 0.00 0.00 0.00 3.36
2481 2751 2.769663 TGTGTTGGGTGTACTCTTGTCT 59.230 45.455 0.00 0.00 0.00 3.41
2482 2752 2.870411 GTGTGTTGGGTGTACTCTTGTC 59.130 50.000 0.00 0.00 0.00 3.18
2483 2753 2.237643 TGTGTGTTGGGTGTACTCTTGT 59.762 45.455 0.00 0.00 0.00 3.16
2485 2755 3.541632 CTTGTGTGTTGGGTGTACTCTT 58.458 45.455 0.00 0.00 0.00 2.85
2490 2760 3.407698 CATAGCTTGTGTGTTGGGTGTA 58.592 45.455 0.00 0.00 0.00 2.90
2491 2761 2.229792 CATAGCTTGTGTGTTGGGTGT 58.770 47.619 0.00 0.00 0.00 4.16
2492 2762 1.541147 CCATAGCTTGTGTGTTGGGTG 59.459 52.381 0.00 0.00 0.00 4.61
2494 2764 2.198827 TCCATAGCTTGTGTGTTGGG 57.801 50.000 0.00 0.00 0.00 4.12
2495 2765 3.084039 ACATCCATAGCTTGTGTGTTGG 58.916 45.455 0.00 0.00 0.00 3.77
2496 2766 3.119743 CCACATCCATAGCTTGTGTGTTG 60.120 47.826 13.08 6.04 39.23 3.33
2499 2769 2.715046 ACCACATCCATAGCTTGTGTG 58.285 47.619 13.08 10.70 39.23 3.82
2501 2771 4.789012 AAAACCACATCCATAGCTTGTG 57.211 40.909 8.26 8.26 40.29 3.33
2557 2830 8.364142 CCCTTTTTAGTGGATTATGACACAAAA 58.636 33.333 0.00 0.00 39.99 2.44
2558 2831 7.507616 ACCCTTTTTAGTGGATTATGACACAAA 59.492 33.333 0.00 0.00 39.99 2.83
2570 2843 2.712087 TGCCAGTACCCTTTTTAGTGGA 59.288 45.455 7.32 0.00 41.07 4.02
2581 2854 1.079336 GACGAAGGTGCCAGTACCC 60.079 63.158 0.85 0.00 41.83 3.69
2584 2857 0.320374 CAAGGACGAAGGTGCCAGTA 59.680 55.000 0.00 0.00 34.61 2.74
2586 2859 0.250295 TTCAAGGACGAAGGTGCCAG 60.250 55.000 0.00 0.00 34.61 4.85
2589 2862 2.100605 ATCTTCAAGGACGAAGGTGC 57.899 50.000 0.00 0.00 42.27 5.01
2596 2869 3.617263 CGGGACTTAAATCTTCAAGGACG 59.383 47.826 0.00 0.00 0.00 4.79
2600 2875 7.203255 AGTTTTCGGGACTTAAATCTTCAAG 57.797 36.000 0.00 0.00 0.00 3.02
2608 2883 6.880529 CACCCTATTAGTTTTCGGGACTTAAA 59.119 38.462 0.00 0.00 38.30 1.52
2618 2893 7.708998 TGTTCAAACACACCCTATTAGTTTTC 58.291 34.615 0.00 0.00 33.17 2.29
2631 2906 5.399013 AGTGCTTAAGTTGTTCAAACACAC 58.601 37.500 4.02 0.00 38.92 3.82
2632 2907 5.636837 GAGTGCTTAAGTTGTTCAAACACA 58.363 37.500 4.02 0.00 38.92 3.72
2633 2908 4.728608 CGAGTGCTTAAGTTGTTCAAACAC 59.271 41.667 4.02 0.52 38.92 3.32
2637 2912 4.270084 CACTCGAGTGCTTAAGTTGTTCAA 59.730 41.667 31.00 0.00 39.39 2.69
2665 2940 6.439599 CAACCAGGAGTATTCGTATAGAGTG 58.560 44.000 0.00 0.00 0.00 3.51
2667 2942 5.241949 AGCAACCAGGAGTATTCGTATAGAG 59.758 44.000 0.00 0.00 0.00 2.43
2668 2943 5.138276 AGCAACCAGGAGTATTCGTATAGA 58.862 41.667 0.00 0.00 0.00 1.98
2669 2944 5.455056 AGCAACCAGGAGTATTCGTATAG 57.545 43.478 0.00 0.00 0.00 1.31
2670 2945 5.864418 AAGCAACCAGGAGTATTCGTATA 57.136 39.130 0.00 0.00 0.00 1.47
2671 2946 4.755266 AAGCAACCAGGAGTATTCGTAT 57.245 40.909 0.00 0.00 0.00 3.06
2672 2947 5.664294 TTAAGCAACCAGGAGTATTCGTA 57.336 39.130 0.00 0.00 0.00 3.43
2674 2949 5.730568 GCAATTAAGCAACCAGGAGTATTCG 60.731 44.000 0.00 0.00 0.00 3.34
2675 2950 5.358160 AGCAATTAAGCAACCAGGAGTATTC 59.642 40.000 0.00 0.00 36.85 1.75
2676 2951 5.264395 AGCAATTAAGCAACCAGGAGTATT 58.736 37.500 0.00 0.00 36.85 1.89
2677 2952 4.860022 AGCAATTAAGCAACCAGGAGTAT 58.140 39.130 0.00 0.00 36.85 2.12
2678 2953 4.301072 AGCAATTAAGCAACCAGGAGTA 57.699 40.909 0.00 0.00 36.85 2.59
2679 2954 3.160679 AGCAATTAAGCAACCAGGAGT 57.839 42.857 0.00 0.00 36.85 3.85
2680 2955 3.507233 TGAAGCAATTAAGCAACCAGGAG 59.493 43.478 0.00 0.00 36.85 3.69
2681 2956 3.495331 TGAAGCAATTAAGCAACCAGGA 58.505 40.909 0.00 0.00 36.85 3.86
2686 2961 6.826893 TCTTTGTTGAAGCAATTAAGCAAC 57.173 33.333 0.00 0.00 39.29 4.17
2711 2986 3.445096 ACTAATGCAAGAAGATTGGTGGC 59.555 43.478 0.00 0.00 0.00 5.01
2719 2994 3.055094 GGACCCTGACTAATGCAAGAAGA 60.055 47.826 0.00 0.00 0.00 2.87
2720 2995 3.274288 GGACCCTGACTAATGCAAGAAG 58.726 50.000 0.00 0.00 0.00 2.85
2721 2996 2.642311 TGGACCCTGACTAATGCAAGAA 59.358 45.455 0.00 0.00 0.00 2.52
2729 3004 5.724370 TGACATTAGATTGGACCCTGACTAA 59.276 40.000 0.00 0.00 0.00 2.24
2737 3012 6.311200 GCAAACAAATGACATTAGATTGGACC 59.689 38.462 15.67 0.00 0.00 4.46
2741 3020 7.620600 GCACAGCAAACAAATGACATTAGATTG 60.621 37.037 0.00 7.96 0.00 2.67
2753 3032 4.695396 TGAATGAAGCACAGCAAACAAAT 58.305 34.783 0.00 0.00 0.00 2.32
2762 3041 2.189594 TCACCCTGAATGAAGCACAG 57.810 50.000 0.00 0.00 0.00 3.66
2800 3079 7.062605 GCTGATGAAGTTATTGTTTTCCATGTG 59.937 37.037 0.00 0.00 0.00 3.21
2897 3176 4.315803 CGAAGAAGTAGAAAAGGGAGCAA 58.684 43.478 0.00 0.00 0.00 3.91
3021 3312 0.393132 TCGAGACGACCTCTGCATCT 60.393 55.000 0.00 0.00 39.78 2.90
3301 3594 6.572519 ACTGCTGTGTTCACAAATTAACAAT 58.427 32.000 7.07 0.00 37.35 2.71
3302 3595 5.960113 ACTGCTGTGTTCACAAATTAACAA 58.040 33.333 7.07 0.00 37.35 2.83
3303 3596 5.574891 ACTGCTGTGTTCACAAATTAACA 57.425 34.783 7.07 0.00 33.35 2.41
3304 3597 5.804979 ACAACTGCTGTGTTCACAAATTAAC 59.195 36.000 7.07 0.00 36.69 2.01
3305 3598 5.960113 ACAACTGCTGTGTTCACAAATTAA 58.040 33.333 7.07 0.00 36.69 1.40
3306 3599 5.574891 ACAACTGCTGTGTTCACAAATTA 57.425 34.783 7.07 0.00 36.69 1.40
3307 3600 4.454728 ACAACTGCTGTGTTCACAAATT 57.545 36.364 7.07 0.00 36.69 1.82
3308 3601 4.082300 TGAACAACTGCTGTGTTCACAAAT 60.082 37.500 24.03 0.00 44.47 2.32
3309 3602 3.254411 TGAACAACTGCTGTGTTCACAAA 59.746 39.130 24.03 11.65 44.47 2.83
3310 3603 2.816672 TGAACAACTGCTGTGTTCACAA 59.183 40.909 24.03 11.88 44.47 3.33
3313 3606 4.511617 TTTTGAACAACTGCTGTGTTCA 57.488 36.364 24.03 24.03 46.65 3.18
3314 3607 4.864247 ACATTTTGAACAACTGCTGTGTTC 59.136 37.500 21.10 21.10 38.67 3.18
3324 3639 6.791303 TGAGACTTACCACATTTTGAACAAC 58.209 36.000 0.00 0.00 0.00 3.32
3410 3725 4.406001 GTGCAAGTTCCTTTACTAGCAC 57.594 45.455 0.00 0.00 43.27 4.40
3439 3835 8.552296 ACTCCAGAAACATACATCCTTTAGAAT 58.448 33.333 0.00 0.00 0.00 2.40
3442 3838 7.493971 CAGACTCCAGAAACATACATCCTTTAG 59.506 40.741 0.00 0.00 0.00 1.85
3453 3849 4.692625 CGAATGAACAGACTCCAGAAACAT 59.307 41.667 0.00 0.00 0.00 2.71
3500 3909 2.557924 CTGCACCAGGAGCAATTTGTAA 59.442 45.455 13.11 0.00 42.17 2.41
3507 3916 0.607217 CACATCTGCACCAGGAGCAA 60.607 55.000 13.11 4.81 42.17 3.91
3525 3934 2.258591 GCGTTCTCTCCGTCTGCA 59.741 61.111 0.00 0.00 0.00 4.41
3591 4000 1.886222 CGAGGAGCTAGAGGGATCAGG 60.886 61.905 0.00 0.00 0.00 3.86
3702 4111 1.203287 CAGAGTCGGAGAGCATTGTCA 59.797 52.381 0.00 0.00 36.95 3.58
3706 4115 0.901124 AAGCAGAGTCGGAGAGCATT 59.099 50.000 0.00 0.00 36.95 3.56
3708 4117 1.599606 GGAAGCAGAGTCGGAGAGCA 61.600 60.000 0.00 0.00 36.95 4.26
3714 4123 0.895530 TTACCTGGAAGCAGAGTCGG 59.104 55.000 0.00 0.00 0.00 4.79
3717 4126 2.784347 GCTTTTACCTGGAAGCAGAGT 58.216 47.619 12.31 0.00 45.74 3.24
3735 4144 1.882912 TGAGTCGCAGTGATTTTGCT 58.117 45.000 0.00 0.00 39.38 3.91
3736 4145 2.224079 TCTTGAGTCGCAGTGATTTTGC 59.776 45.455 0.00 0.00 38.18 3.68
3738 4147 3.499918 CCTTCTTGAGTCGCAGTGATTTT 59.500 43.478 0.00 0.00 0.00 1.82
3742 4151 1.040646 ACCTTCTTGAGTCGCAGTGA 58.959 50.000 0.00 0.00 0.00 3.41
3745 4154 2.447244 AGAACCTTCTTGAGTCGCAG 57.553 50.000 0.00 0.00 32.55 5.18
3768 4182 3.617284 TGCTGCAATCTGTCAGATCATT 58.383 40.909 15.75 0.00 32.89 2.57
3783 4197 0.745486 AGATACGCATTGCTGCTGCA 60.745 50.000 14.93 14.93 46.65 4.41
3784 4198 0.041488 GAGATACGCATTGCTGCTGC 60.041 55.000 8.89 8.89 46.65 5.25
3785 4199 1.292992 TGAGATACGCATTGCTGCTG 58.707 50.000 7.12 0.00 46.65 4.41
3786 4200 2.028420 TTGAGATACGCATTGCTGCT 57.972 45.000 7.12 0.00 46.65 4.24
3787 4201 3.742882 TCTATTGAGATACGCATTGCTGC 59.257 43.478 7.12 0.00 45.31 5.25
3788 4202 6.477669 AATCTATTGAGATACGCATTGCTG 57.522 37.500 7.12 3.15 41.87 4.41
3789 4203 8.783833 AATAATCTATTGAGATACGCATTGCT 57.216 30.769 7.12 0.00 41.87 3.91
3812 4226 9.906660 TTGAATAGCGTCTTGTGAAAATTTAAT 57.093 25.926 0.00 0.00 0.00 1.40
3813 4227 9.176181 GTTGAATAGCGTCTTGTGAAAATTTAA 57.824 29.630 0.00 0.00 0.00 1.52
3814 4228 8.346300 TGTTGAATAGCGTCTTGTGAAAATTTA 58.654 29.630 0.00 0.00 0.00 1.40
3815 4229 7.199766 TGTTGAATAGCGTCTTGTGAAAATTT 58.800 30.769 0.00 0.00 0.00 1.82
3816 4230 6.734137 TGTTGAATAGCGTCTTGTGAAAATT 58.266 32.000 0.00 0.00 0.00 1.82
3817 4231 6.312399 TGTTGAATAGCGTCTTGTGAAAAT 57.688 33.333 0.00 0.00 0.00 1.82
3818 4232 5.743026 TGTTGAATAGCGTCTTGTGAAAA 57.257 34.783 0.00 0.00 0.00 2.29
3819 4233 5.700832 AGATGTTGAATAGCGTCTTGTGAAA 59.299 36.000 0.00 0.00 30.24 2.69
3820 4234 5.120674 CAGATGTTGAATAGCGTCTTGTGAA 59.879 40.000 0.00 0.00 31.88 3.18
3821 4235 4.627035 CAGATGTTGAATAGCGTCTTGTGA 59.373 41.667 0.00 0.00 31.88 3.58
3822 4236 4.627035 TCAGATGTTGAATAGCGTCTTGTG 59.373 41.667 0.00 0.00 31.88 3.33
3823 4237 4.627467 GTCAGATGTTGAATAGCGTCTTGT 59.373 41.667 0.00 0.00 37.61 3.16
3824 4238 4.867047 AGTCAGATGTTGAATAGCGTCTTG 59.133 41.667 0.00 0.00 37.61 3.02
3825 4239 4.867047 CAGTCAGATGTTGAATAGCGTCTT 59.133 41.667 0.00 0.00 37.61 3.01
3826 4240 4.158579 TCAGTCAGATGTTGAATAGCGTCT 59.841 41.667 0.00 0.00 37.61 4.18
3827 4241 4.424626 TCAGTCAGATGTTGAATAGCGTC 58.575 43.478 0.00 0.00 37.61 5.19
3828 4242 4.456280 TCAGTCAGATGTTGAATAGCGT 57.544 40.909 0.00 0.00 37.61 5.07
3829 4243 5.784750 TTTCAGTCAGATGTTGAATAGCG 57.215 39.130 4.31 0.00 37.61 4.26
3830 4244 6.798959 GTGTTTTCAGTCAGATGTTGAATAGC 59.201 38.462 4.31 0.00 37.61 2.97
3831 4245 7.011773 CGTGTTTTCAGTCAGATGTTGAATAG 58.988 38.462 4.31 0.00 37.61 1.73
3832 4246 6.704050 TCGTGTTTTCAGTCAGATGTTGAATA 59.296 34.615 4.31 0.00 37.61 1.75
3833 4247 5.527214 TCGTGTTTTCAGTCAGATGTTGAAT 59.473 36.000 4.31 0.00 37.61 2.57
3834 4248 4.873259 TCGTGTTTTCAGTCAGATGTTGAA 59.127 37.500 0.00 0.59 37.61 2.69
3835 4249 4.438148 TCGTGTTTTCAGTCAGATGTTGA 58.562 39.130 0.00 0.00 0.00 3.18
3836 4250 4.794248 TCGTGTTTTCAGTCAGATGTTG 57.206 40.909 0.00 0.00 0.00 3.33
3837 4251 6.481976 TGTTATCGTGTTTTCAGTCAGATGTT 59.518 34.615 0.00 0.00 0.00 2.71
3838 4252 5.989168 TGTTATCGTGTTTTCAGTCAGATGT 59.011 36.000 0.00 0.00 0.00 3.06
3839 4253 6.146184 AGTGTTATCGTGTTTTCAGTCAGATG 59.854 38.462 0.00 0.00 0.00 2.90
3840 4254 6.223852 AGTGTTATCGTGTTTTCAGTCAGAT 58.776 36.000 0.00 0.00 0.00 2.90
3841 4255 5.597806 AGTGTTATCGTGTTTTCAGTCAGA 58.402 37.500 0.00 0.00 0.00 3.27
3842 4256 5.907197 AGTGTTATCGTGTTTTCAGTCAG 57.093 39.130 0.00 0.00 0.00 3.51
3843 4257 5.693104 GGTAGTGTTATCGTGTTTTCAGTCA 59.307 40.000 0.00 0.00 0.00 3.41
3844 4258 5.693104 TGGTAGTGTTATCGTGTTTTCAGTC 59.307 40.000 0.00 0.00 0.00 3.51
3845 4259 5.603596 TGGTAGTGTTATCGTGTTTTCAGT 58.396 37.500 0.00 0.00 0.00 3.41
3846 4260 6.721571 ATGGTAGTGTTATCGTGTTTTCAG 57.278 37.500 0.00 0.00 0.00 3.02
3847 4261 7.226918 TGAAATGGTAGTGTTATCGTGTTTTCA 59.773 33.333 0.00 0.00 0.00 2.69
3848 4262 7.577979 TGAAATGGTAGTGTTATCGTGTTTTC 58.422 34.615 0.00 0.00 0.00 2.29
3849 4263 7.442969 TCTGAAATGGTAGTGTTATCGTGTTTT 59.557 33.333 0.00 0.00 0.00 2.43
3850 4264 6.932400 TCTGAAATGGTAGTGTTATCGTGTTT 59.068 34.615 0.00 0.00 0.00 2.83
3851 4265 6.460781 TCTGAAATGGTAGTGTTATCGTGTT 58.539 36.000 0.00 0.00 0.00 3.32
3852 4266 6.032956 TCTGAAATGGTAGTGTTATCGTGT 57.967 37.500 0.00 0.00 0.00 4.49
3853 4267 6.535150 ACATCTGAAATGGTAGTGTTATCGTG 59.465 38.462 0.00 0.00 0.00 4.35
3854 4268 6.640518 ACATCTGAAATGGTAGTGTTATCGT 58.359 36.000 0.00 0.00 0.00 3.73
3855 4269 8.703336 CATACATCTGAAATGGTAGTGTTATCG 58.297 37.037 0.00 0.00 0.00 2.92
3856 4270 9.764363 TCATACATCTGAAATGGTAGTGTTATC 57.236 33.333 0.00 0.00 0.00 1.75
3858 4272 9.546428 CATCATACATCTGAAATGGTAGTGTTA 57.454 33.333 0.00 0.00 0.00 2.41
3867 4281 5.445540 CGATCGGCATCATACATCTGAAATG 60.446 44.000 7.38 0.00 0.00 2.32
3868 4282 4.628766 CGATCGGCATCATACATCTGAAAT 59.371 41.667 7.38 0.00 0.00 2.17
4006 4420 1.068055 CCTGCCAATCACAGCAACTTC 60.068 52.381 0.00 0.00 38.82 3.01
4175 4592 2.818132 CGCAGGGATGAGAGGACC 59.182 66.667 0.00 0.00 0.00 4.46
4209 4626 5.126707 ACAAATTGGATCTGAATGGAGAAGC 59.873 40.000 0.00 0.00 0.00 3.86
4226 4644 5.743467 TGCACGTTCAACTAGTACAAATTG 58.257 37.500 0.00 0.00 0.00 2.32
4344 4763 8.827677 AGAAATAATATCGTGCAGGAGTTTAAC 58.172 33.333 15.18 10.09 0.00 2.01
4405 4825 1.947456 GCTGGAGGTTGAAGAACGTTT 59.053 47.619 0.46 0.00 32.28 3.60
4427 4847 3.335484 AGAAGGTAGACCAGAGAAGAGGT 59.665 47.826 0.66 0.00 41.83 3.85
4428 4848 3.976015 AGAAGGTAGACCAGAGAAGAGG 58.024 50.000 0.66 0.00 38.89 3.69
4429 4849 4.578928 GCTAGAAGGTAGACCAGAGAAGAG 59.421 50.000 0.66 0.00 38.89 2.85
4430 4850 4.018324 TGCTAGAAGGTAGACCAGAGAAGA 60.018 45.833 0.66 0.00 38.89 2.87
4460 4880 4.459089 GAGGTGGTCGCAGGAGGC 62.459 72.222 0.00 0.00 39.90 4.70
4461 4881 4.135153 CGAGGTGGTCGCAGGAGG 62.135 72.222 0.00 0.00 43.03 4.30
4484 4904 0.532573 GCATCAGAACGAGTGGGAGA 59.467 55.000 0.00 0.00 0.00 3.71
4486 4906 1.596934 GGCATCAGAACGAGTGGGA 59.403 57.895 0.00 0.00 0.00 4.37
4509 4945 3.649843 ACAGGTTTATAGGGATGGTCGA 58.350 45.455 0.00 0.00 0.00 4.20
4522 4958 2.297033 GTCTGGTCGGTGTACAGGTTTA 59.703 50.000 0.00 0.00 33.19 2.01
4526 4962 0.966920 AAGTCTGGTCGGTGTACAGG 59.033 55.000 0.00 0.00 33.19 4.00
4543 4979 1.457346 GGTGCAGGTCATCAAGGAAG 58.543 55.000 0.00 0.00 0.00 3.46
4576 5012 0.930742 GAGTAAGCCGCGACATCTCG 60.931 60.000 8.23 0.00 43.28 4.04
4581 5017 2.126071 GCAGAGTAAGCCGCGACA 60.126 61.111 8.23 0.00 0.00 4.35
4598 5034 4.570663 GATGGTCGGAGGCGACGG 62.571 72.222 0.00 0.00 39.56 4.79
4602 5038 2.978298 TAGAGGGATGGTCGGAGGCG 62.978 65.000 0.00 0.00 0.00 5.52
4611 5047 2.755103 GGTTGCAAGTTTAGAGGGATGG 59.245 50.000 0.00 0.00 0.00 3.51
4625 5061 3.009723 GAGAAATCTGATCGGGTTGCAA 58.990 45.455 8.31 0.00 0.00 4.08
4628 5064 3.868077 GTCAGAGAAATCTGATCGGGTTG 59.132 47.826 10.87 0.00 46.81 3.77
4630 5066 3.099905 TGTCAGAGAAATCTGATCGGGT 58.900 45.455 10.87 0.00 46.81 5.28
4635 5071 2.169352 CGGGGTGTCAGAGAAATCTGAT 59.831 50.000 10.87 0.00 46.81 2.90
4688 5124 1.524482 GGAGGCGAGGAAGCAGATT 59.476 57.895 0.00 0.00 39.27 2.40
4708 5144 1.068588 TCTGAGTTGTGACGTCCCAAG 59.931 52.381 13.96 2.47 0.00 3.61
4717 5153 1.902508 GAGGGATGGTCTGAGTTGTGA 59.097 52.381 0.00 0.00 0.00 3.58
4718 5154 1.905215 AGAGGGATGGTCTGAGTTGTG 59.095 52.381 0.00 0.00 0.00 3.33
4719 5155 2.334006 AGAGGGATGGTCTGAGTTGT 57.666 50.000 0.00 0.00 0.00 3.32
4720 5156 4.508662 GTTTAGAGGGATGGTCTGAGTTG 58.491 47.826 0.00 0.00 0.00 3.16
4721 5157 3.519913 GGTTTAGAGGGATGGTCTGAGTT 59.480 47.826 0.00 0.00 0.00 3.01
4722 5158 3.108376 GGTTTAGAGGGATGGTCTGAGT 58.892 50.000 0.00 0.00 0.00 3.41
4732 5179 1.347707 CACAGTGCAGGTTTAGAGGGA 59.652 52.381 0.00 0.00 0.00 4.20
4735 5182 2.224281 TGGTCACAGTGCAGGTTTAGAG 60.224 50.000 0.00 0.00 0.00 2.43
4743 5190 2.740981 GAGAAATCTGGTCACAGTGCAG 59.259 50.000 0.00 0.00 45.14 4.41
4748 5195 2.611518 GTCCGAGAAATCTGGTCACAG 58.388 52.381 0.00 0.00 46.30 3.66
4765 5212 1.382146 TAGGGGGTGTGGATCGTCC 60.382 63.158 0.00 0.00 36.96 4.79
4768 5215 1.382695 AGGTAGGGGGTGTGGATCG 60.383 63.158 0.00 0.00 0.00 3.69
4771 5218 2.038329 CGAGGTAGGGGGTGTGGA 59.962 66.667 0.00 0.00 0.00 4.02
4775 5222 0.680921 TAACGTCGAGGTAGGGGGTG 60.681 60.000 11.72 0.00 0.00 4.61
4781 5228 0.100146 GCCACCTAACGTCGAGGTAG 59.900 60.000 18.89 14.18 45.93 3.18
4797 5244 4.471747 TGTACCAACATATTACAGGAGCCA 59.528 41.667 0.00 0.00 0.00 4.75
4814 5261 2.679342 GGAGCAGGCCCATGTACCA 61.679 63.158 0.00 0.00 0.00 3.25
4861 5308 0.815095 ATCACTCGATGTGGCGTACA 59.185 50.000 12.89 0.00 46.20 2.90
4877 5324 4.653801 TCCTGGTACTTATAGCAAGCATCA 59.346 41.667 0.00 0.00 38.31 3.07
4898 5345 2.479275 GCTTGTACGTTGTCTCCTTTCC 59.521 50.000 0.00 0.00 0.00 3.13
4899 5346 3.391049 AGCTTGTACGTTGTCTCCTTTC 58.609 45.455 0.00 0.00 0.00 2.62
4900 5347 3.470645 AGCTTGTACGTTGTCTCCTTT 57.529 42.857 0.00 0.00 0.00 3.11
4946 6247 4.394300 AGAAAGAAAGAAGATGTCATGCCG 59.606 41.667 0.00 0.00 0.00 5.69
4951 6252 8.624776 GGAAAGAAAGAAAGAAAGAAGATGTCA 58.375 33.333 0.00 0.00 0.00 3.58
4958 6259 9.942850 ACAATTTGGAAAGAAAGAAAGAAAGAA 57.057 25.926 0.78 0.00 0.00 2.52
4987 6288 5.063204 CAGATACACCTCTACCTCTCTCTG 58.937 50.000 0.00 0.00 0.00 3.35
4996 6297 6.754702 TTACACTCACAGATACACCTCTAC 57.245 41.667 0.00 0.00 0.00 2.59
5010 6311 5.790593 TCCCACTTTCTGTATTACACTCAC 58.209 41.667 0.00 0.00 0.00 3.51
5031 6332 3.480470 CATGATGTTAGGGTGTGGATCC 58.520 50.000 4.20 4.20 0.00 3.36
5038 6339 7.155328 GTCTCTTATACCATGATGTTAGGGTG 58.845 42.308 0.00 0.00 35.20 4.61
5057 6358 0.546988 GGGGTGGTAGGTGGTCTCTT 60.547 60.000 0.00 0.00 0.00 2.85
5088 6389 3.056313 GCCAGATTTCCAGTGCGGC 62.056 63.158 0.00 0.00 33.14 6.53
5101 6402 4.842531 TGAAAATGGTATCAGAGCCAGA 57.157 40.909 3.27 0.00 38.27 3.86
5110 6411 2.545742 GCCGGGCATTGAAAATGGTATC 60.546 50.000 15.62 0.00 0.00 2.24
5116 6417 2.024414 GACTAGCCGGGCATTGAAAAT 58.976 47.619 23.09 0.00 0.00 1.82
5123 6424 0.462047 CGAAAAGACTAGCCGGGCAT 60.462 55.000 23.09 5.91 0.00 4.40
5129 6430 3.131400 AGGAGACATCGAAAAGACTAGCC 59.869 47.826 0.00 0.00 0.00 3.93
5153 6454 5.106948 CCGATGCTTGCTATAAGTACCAATG 60.107 44.000 0.00 0.00 0.00 2.82
5154 6455 4.997395 CCGATGCTTGCTATAAGTACCAAT 59.003 41.667 0.00 0.00 0.00 3.16
5173 8879 1.040893 TGTACGCCAGATCACCCGAT 61.041 55.000 0.00 0.00 33.31 4.18
5178 8884 0.036765 TTGGGTGTACGCCAGATCAC 60.037 55.000 26.20 8.83 0.00 3.06
5179 8885 0.249120 CTTGGGTGTACGCCAGATCA 59.751 55.000 26.20 12.44 0.00 2.92
5183 8889 1.375523 GGACTTGGGTGTACGCCAG 60.376 63.158 26.20 17.91 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.