Multiple sequence alignment - TraesCS1D01G305800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G305800 chr1D 100.000 7320 0 0 1 7320 403067279 403059960 0.000000e+00 13518
1 TraesCS1D01G305800 chr3A 97.311 2008 52 2 3403 5409 634080008 634078002 0.000000e+00 3408
2 TraesCS1D01G305800 chr3A 91.451 1275 100 7 3409 4683 595774956 595776221 0.000000e+00 1742
3 TraesCS1D01G305800 chr3A 92.658 395 28 1 451 845 438357143 438357536 1.070000e-157 568
4 TraesCS1D01G305800 chr1A 96.811 2007 56 3 3404 5409 585643094 585641095 0.000000e+00 3345
5 TraesCS1D01G305800 chr1A 91.799 2012 159 6 3402 5409 590118726 590116717 0.000000e+00 2796
6 TraesCS1D01G305800 chr1A 97.123 1008 29 0 3641 4648 543489332 543490339 0.000000e+00 1701
7 TraesCS1D01G305800 chr1A 92.368 1153 56 15 959 2088 498180435 498179292 0.000000e+00 1613
8 TraesCS1D01G305800 chr1A 92.247 761 34 11 6564 7311 498176002 498175254 0.000000e+00 1055
9 TraesCS1D01G305800 chr1A 97.412 425 11 0 2092 2516 498179125 498178701 0.000000e+00 725
10 TraesCS1D01G305800 chr1A 94.348 460 19 4 1 453 498181265 498180806 0.000000e+00 699
11 TraesCS1D01G305800 chr1A 86.909 634 43 20 5928 6528 498176833 498176207 0.000000e+00 675
12 TraesCS1D01G305800 chr1A 91.759 449 25 5 2512 2948 498178594 498178146 1.350000e-171 614
13 TraesCS1D01G305800 chr1A 92.814 334 21 1 2985 3315 498178139 498177806 1.430000e-131 481
14 TraesCS1D01G305800 chr1A 83.551 535 38 15 5439 5929 498177485 498176957 8.660000e-124 455
15 TraesCS1D01G305800 chr1A 94.142 239 12 2 3401 3638 543488022 543488259 5.400000e-96 363
16 TraesCS1D01G305800 chr1A 90.722 97 7 2 3312 3406 498177567 498177471 2.140000e-25 128
17 TraesCS1D01G305800 chr3D 98.705 1853 23 1 3558 5409 591111238 591109386 0.000000e+00 3288
18 TraesCS1D01G305800 chr3D 93.384 393 25 1 450 842 213131330 213131721 1.370000e-161 580
19 TraesCS1D01G305800 chr3D 92.875 393 22 4 450 842 324642217 324642603 3.830000e-157 566
20 TraesCS1D01G305800 chr5B 95.497 2021 72 6 3397 5409 657199415 657201424 0.000000e+00 3210
21 TraesCS1D01G305800 chr5D 92.697 1561 101 9 3404 4962 527506759 527505210 0.000000e+00 2239
22 TraesCS1D01G305800 chr4D 84.791 2058 228 51 1314 3317 318496242 318494216 0.000000e+00 1988
23 TraesCS1D01G305800 chr4D 92.875 393 27 1 450 842 351223060 351223451 2.960000e-158 569
24 TraesCS1D01G305800 chr4D 83.249 197 20 9 1131 1325 318496458 318496273 1.260000e-37 169
25 TraesCS1D01G305800 chr1B 93.016 1217 54 13 846 2032 541019704 541018489 0.000000e+00 1748
26 TraesCS1D01G305800 chr1B 94.816 868 38 3 2086 2948 541018485 541017620 0.000000e+00 1347
27 TraesCS1D01G305800 chr1B 93.719 796 38 6 6531 7320 541012706 541011917 0.000000e+00 1182
28 TraesCS1D01G305800 chr1B 92.231 399 28 3 451 848 361133247 361132851 4.960000e-156 562
29 TraesCS1D01G305800 chr1B 92.749 331 24 0 2985 3315 541017613 541017283 5.140000e-131 479
30 TraesCS1D01G305800 chr1B 87.228 368 22 6 5626 5976 541016744 541016385 5.320000e-106 396
31 TraesCS1D01G305800 chr1B 91.288 264 14 3 6274 6528 541013144 541012881 1.170000e-92 351
32 TraesCS1D01G305800 chr1B 86.842 190 10 3 6037 6226 541016382 541016208 1.610000e-46 198
33 TraesCS1D01G305800 chr1B 85.437 103 6 7 3313 3406 541017052 541016950 1.680000e-16 99
34 TraesCS1D01G305800 chr4A 84.937 1341 142 40 1307 2608 155833509 155832190 0.000000e+00 1303
35 TraesCS1D01G305800 chr4A 80.678 1387 182 56 1512 2851 402711370 402710023 0.000000e+00 998
36 TraesCS1D01G305800 chr4A 87.539 642 64 7 2678 3317 155830430 155829803 0.000000e+00 728
37 TraesCS1D01G305800 chr4A 85.029 688 77 20 2181 2851 12695015 12694337 0.000000e+00 676
38 TraesCS1D01G305800 chr4A 79.972 714 99 31 1464 2145 12731819 12731118 3.070000e-133 486
39 TraesCS1D01G305800 chr4A 90.909 132 8 4 1115 1243 155833729 155833599 2.710000e-39 174
40 TraesCS1D01G305800 chr4B 86.182 1223 120 32 1307 2497 395820584 395819379 0.000000e+00 1277
41 TraesCS1D01G305800 chr4B 82.805 884 108 27 2522 3385 395819190 395818331 0.000000e+00 750
42 TraesCS1D01G305800 chr4B 82.095 525 63 21 1465 1963 223382327 223382846 3.160000e-113 420
43 TraesCS1D01G305800 chr4B 82.326 215 23 10 1113 1325 395820809 395820608 9.760000e-39 172
44 TraesCS1D01G305800 chr2B 79.132 1682 335 16 3735 5408 669239357 669241030 0.000000e+00 1147
45 TraesCS1D01G305800 chr2B 82.284 937 115 33 1465 2363 758095719 758096642 0.000000e+00 763
46 TraesCS1D01G305800 chr2B 92.231 399 29 2 444 842 168774404 168774008 1.380000e-156 564
47 TraesCS1D01G305800 chr7A 93.175 718 40 3 3406 4116 162774504 162775219 0.000000e+00 1046
48 TraesCS1D01G305800 chr2D 93.130 393 26 1 453 845 40642140 40641749 6.370000e-160 575
49 TraesCS1D01G305800 chr6D 93.095 391 25 2 455 845 396473581 396473193 8.240000e-159 571
50 TraesCS1D01G305800 chr6D 92.405 395 26 4 449 842 470881869 470882260 1.780000e-155 560
51 TraesCS1D01G305800 chr6B 85.856 403 49 7 1464 1861 264115 263716 8.780000e-114 422


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G305800 chr1D 403059960 403067279 7319 True 13518.000000 13518 100.000000 1 7320 1 chr1D.!!$R1 7319
1 TraesCS1D01G305800 chr3A 634078002 634080008 2006 True 3408.000000 3408 97.311000 3403 5409 1 chr3A.!!$R1 2006
2 TraesCS1D01G305800 chr3A 595774956 595776221 1265 False 1742.000000 1742 91.451000 3409 4683 1 chr3A.!!$F2 1274
3 TraesCS1D01G305800 chr1A 585641095 585643094 1999 True 3345.000000 3345 96.811000 3404 5409 1 chr1A.!!$R1 2005
4 TraesCS1D01G305800 chr1A 590116717 590118726 2009 True 2796.000000 2796 91.799000 3402 5409 1 chr1A.!!$R2 2007
5 TraesCS1D01G305800 chr1A 543488022 543490339 2317 False 1032.000000 1701 95.632500 3401 4648 2 chr1A.!!$F1 1247
6 TraesCS1D01G305800 chr1A 498175254 498181265 6011 True 716.111111 1613 91.347778 1 7311 9 chr1A.!!$R3 7310
7 TraesCS1D01G305800 chr3D 591109386 591111238 1852 True 3288.000000 3288 98.705000 3558 5409 1 chr3D.!!$R1 1851
8 TraesCS1D01G305800 chr5B 657199415 657201424 2009 False 3210.000000 3210 95.497000 3397 5409 1 chr5B.!!$F1 2012
9 TraesCS1D01G305800 chr5D 527505210 527506759 1549 True 2239.000000 2239 92.697000 3404 4962 1 chr5D.!!$R1 1558
10 TraesCS1D01G305800 chr4D 318494216 318496458 2242 True 1078.500000 1988 84.020000 1131 3317 2 chr4D.!!$R1 2186
11 TraesCS1D01G305800 chr1B 541011917 541019704 7787 True 725.000000 1748 90.636875 846 7320 8 chr1B.!!$R2 6474
12 TraesCS1D01G305800 chr4A 402710023 402711370 1347 True 998.000000 998 80.678000 1512 2851 1 chr4A.!!$R3 1339
13 TraesCS1D01G305800 chr4A 155829803 155833729 3926 True 735.000000 1303 87.795000 1115 3317 3 chr4A.!!$R4 2202
14 TraesCS1D01G305800 chr4A 12694337 12695015 678 True 676.000000 676 85.029000 2181 2851 1 chr4A.!!$R1 670
15 TraesCS1D01G305800 chr4A 12731118 12731819 701 True 486.000000 486 79.972000 1464 2145 1 chr4A.!!$R2 681
16 TraesCS1D01G305800 chr4B 395818331 395820809 2478 True 733.000000 1277 83.771000 1113 3385 3 chr4B.!!$R1 2272
17 TraesCS1D01G305800 chr4B 223382327 223382846 519 False 420.000000 420 82.095000 1465 1963 1 chr4B.!!$F1 498
18 TraesCS1D01G305800 chr2B 669239357 669241030 1673 False 1147.000000 1147 79.132000 3735 5408 1 chr2B.!!$F1 1673
19 TraesCS1D01G305800 chr2B 758095719 758096642 923 False 763.000000 763 82.284000 1465 2363 1 chr2B.!!$F2 898
20 TraesCS1D01G305800 chr7A 162774504 162775219 715 False 1046.000000 1046 93.175000 3406 4116 1 chr7A.!!$F1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 479 0.105709 AGGGGGTGTTTGTTTCCAGG 60.106 55.000 0.00 0.00 0.00 4.45 F
473 481 0.105913 GGGGTGTTTGTTTCCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20 F
844 852 0.260230 TGAACCAAACAGGGCCTCAA 59.740 50.000 0.95 0.00 43.89 3.02 F
890 898 0.395586 GCATATGGGCCAGGTTCACA 60.396 55.000 13.78 0.00 0.00 3.58 F
2063 2499 1.065647 TTCCGGGTATTTGGGACACA 58.934 50.000 0.00 0.00 39.29 3.72 F
2979 5579 0.109919 TGATGAACGGAGTGTCGACG 60.110 55.000 11.62 0.31 45.00 5.12 F
3160 5765 1.004044 CTCAGCACTGGTTTGAGGGAT 59.996 52.381 0.00 0.00 35.75 3.85 F
3229 5834 1.208165 AGGAGGCGGTGGAGGATTTT 61.208 55.000 0.00 0.00 0.00 1.82 F
5411 9364 0.538516 TTGCTCCTGCGCCCTTTAAA 60.539 50.000 4.18 0.00 43.34 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1310 1653 0.759436 GCTCCTCGTCCTTCCCCATA 60.759 60.000 0.00 0.00 0.00 2.74 R
2042 2478 1.814394 GTGTCCCAAATACCCGGAAAC 59.186 52.381 0.73 0.00 0.00 2.78 R
2739 5339 0.524862 AAGCTGCCTGAAATGCTTCG 59.475 50.000 0.00 0.00 41.21 3.79 R
2853 5453 0.529337 CTCCAGTGCCAGATACTGCG 60.529 60.000 0.00 0.00 43.19 5.18 R
3185 5790 1.191489 TCCTCCTCATCCACGTTGCA 61.191 55.000 0.00 0.00 0.00 4.08 R
4764 8716 0.177604 TTTGTGCAAGTGGCTTTGGG 59.822 50.000 0.00 0.00 45.15 4.12 R
5329 9282 7.148069 GGTGGCCTTTCTATATTACAATATGCC 60.148 40.741 3.32 9.92 35.32 4.40 R
5423 9376 3.465403 CGGGAGAGGGTGCAGGAG 61.465 72.222 0.00 0.00 0.00 3.69 R
6400 13560 0.043310 GTCATAACGAACGCGATGGC 60.043 55.000 15.93 1.76 41.64 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.148480 AGAGAGTTATTTGTGTGCTCATGTTC 59.852 38.462 0.00 0.00 0.00 3.18
67 68 1.742750 GCACCATCTACGGAAGAACCC 60.743 57.143 0.00 0.00 37.89 4.11
74 75 0.318120 TACGGAAGAACCCCAACGAC 59.682 55.000 0.00 0.00 34.64 4.34
99 100 5.751028 CCCTCTTTGACGAGATCTTTCATAC 59.249 44.000 8.40 0.00 32.74 2.39
135 138 0.391228 TGTCTAGTGACCAAAGCGCA 59.609 50.000 11.47 0.00 42.28 6.09
140 143 1.890876 AGTGACCAAAGCGCAATACA 58.109 45.000 11.47 0.00 0.00 2.29
154 157 0.817013 AATACATGGTGCCTTTGCCG 59.183 50.000 0.00 0.00 36.33 5.69
184 187 5.637810 TGTACTCGGCATAGTTCTTTTTCTG 59.362 40.000 0.00 0.00 0.00 3.02
219 222 5.870433 TCGGTAAAGCTTTCGTCATCATTTA 59.130 36.000 16.57 0.00 0.00 1.40
255 258 9.729281 AATCAATTATCCTTGCAAGAAAACAAT 57.271 25.926 28.05 14.92 0.00 2.71
294 301 4.944317 TCACCGCCAAATCACATACAATTA 59.056 37.500 0.00 0.00 0.00 1.40
304 311 8.453320 CAAATCACATACAATTACTCAAGCTCA 58.547 33.333 0.00 0.00 0.00 4.26
326 333 7.040892 GCTCAGAAAAGCATCATATATGGTCAA 60.041 37.037 12.78 0.00 42.05 3.18
364 371 0.808755 CACTAAACCCCAATGCGACC 59.191 55.000 0.00 0.00 0.00 4.79
417 425 4.397420 AGCAACACCACAGTTATGATGAA 58.603 39.130 0.00 0.00 0.00 2.57
447 455 7.106239 ACGAAGATTATGAAGTTCTTCACCAT 58.894 34.615 15.98 11.28 43.50 3.55
448 456 7.065085 ACGAAGATTATGAAGTTCTTCACCATG 59.935 37.037 15.98 5.56 43.50 3.66
453 461 3.405831 TGAAGTTCTTCACCATGCTCAG 58.594 45.455 10.67 0.00 0.00 3.35
454 462 2.486472 AGTTCTTCACCATGCTCAGG 57.514 50.000 0.00 0.00 0.00 3.86
455 463 1.004044 AGTTCTTCACCATGCTCAGGG 59.996 52.381 0.00 0.00 38.43 4.45
456 464 0.329261 TTCTTCACCATGCTCAGGGG 59.671 55.000 5.52 0.00 36.39 4.79
458 466 1.852157 TTCACCATGCTCAGGGGGT 60.852 57.895 2.56 0.00 36.92 4.95
459 467 2.044650 CACCATGCTCAGGGGGTG 60.045 66.667 5.52 4.94 44.17 4.61
460 468 2.532715 ACCATGCTCAGGGGGTGT 60.533 61.111 5.52 0.00 36.39 4.16
462 470 1.077265 CCATGCTCAGGGGGTGTTT 59.923 57.895 0.00 0.00 0.00 2.83
464 472 0.540365 CATGCTCAGGGGGTGTTTGT 60.540 55.000 0.00 0.00 0.00 2.83
465 473 0.188342 ATGCTCAGGGGGTGTTTGTT 59.812 50.000 0.00 0.00 0.00 2.83
467 475 0.673985 GCTCAGGGGGTGTTTGTTTC 59.326 55.000 0.00 0.00 0.00 2.78
468 476 1.328279 CTCAGGGGGTGTTTGTTTCC 58.672 55.000 0.00 0.00 0.00 3.13
469 477 0.631753 TCAGGGGGTGTTTGTTTCCA 59.368 50.000 0.00 0.00 0.00 3.53
470 478 1.039856 CAGGGGGTGTTTGTTTCCAG 58.960 55.000 0.00 0.00 0.00 3.86
471 479 0.105709 AGGGGGTGTTTGTTTCCAGG 60.106 55.000 0.00 0.00 0.00 4.45
472 480 1.118965 GGGGGTGTTTGTTTCCAGGG 61.119 60.000 0.00 0.00 0.00 4.45
473 481 0.105913 GGGGTGTTTGTTTCCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
474 482 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
475 483 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
476 484 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
477 485 2.764010 GGTGTTTGTTTCCAGGGACTTT 59.236 45.455 0.00 0.00 34.60 2.66
478 486 3.196901 GGTGTTTGTTTCCAGGGACTTTT 59.803 43.478 0.00 0.00 34.60 2.27
479 487 4.323180 GGTGTTTGTTTCCAGGGACTTTTT 60.323 41.667 0.00 0.00 34.60 1.94
480 488 4.629634 GTGTTTGTTTCCAGGGACTTTTTG 59.370 41.667 0.00 0.00 34.60 2.44
481 489 4.528596 TGTTTGTTTCCAGGGACTTTTTGA 59.471 37.500 0.00 0.00 34.60 2.69
482 490 5.188751 TGTTTGTTTCCAGGGACTTTTTGAT 59.811 36.000 0.00 0.00 34.60 2.57
483 491 4.935352 TGTTTCCAGGGACTTTTTGATG 57.065 40.909 0.00 0.00 34.60 3.07
484 492 4.285863 TGTTTCCAGGGACTTTTTGATGT 58.714 39.130 0.00 0.00 34.60 3.06
485 493 5.450453 TGTTTCCAGGGACTTTTTGATGTA 58.550 37.500 0.00 0.00 34.60 2.29
486 494 5.534654 TGTTTCCAGGGACTTTTTGATGTAG 59.465 40.000 0.00 0.00 34.60 2.74
487 495 4.301072 TCCAGGGACTTTTTGATGTAGG 57.699 45.455 0.00 0.00 34.60 3.18
488 496 3.010138 TCCAGGGACTTTTTGATGTAGGG 59.990 47.826 0.00 0.00 34.60 3.53
489 497 3.010138 CCAGGGACTTTTTGATGTAGGGA 59.990 47.826 0.00 0.00 34.60 4.20
490 498 4.010349 CAGGGACTTTTTGATGTAGGGAC 58.990 47.826 0.00 0.00 34.60 4.46
491 499 3.916989 AGGGACTTTTTGATGTAGGGACT 59.083 43.478 0.00 0.00 38.08 3.85
492 500 5.045869 CAGGGACTTTTTGATGTAGGGACTA 60.046 44.000 0.00 0.00 36.39 2.59
493 501 5.189934 AGGGACTTTTTGATGTAGGGACTAG 59.810 44.000 0.00 0.00 36.99 2.57
494 502 5.189145 GGGACTTTTTGATGTAGGGACTAGA 59.811 44.000 0.00 0.00 44.14 2.43
495 503 6.296259 GGGACTTTTTGATGTAGGGACTAGAA 60.296 42.308 0.00 0.00 44.14 2.10
496 504 7.166167 GGACTTTTTGATGTAGGGACTAGAAA 58.834 38.462 0.00 0.00 44.14 2.52
497 505 7.664318 GGACTTTTTGATGTAGGGACTAGAAAA 59.336 37.037 0.00 0.00 44.14 2.29
498 506 8.990163 ACTTTTTGATGTAGGGACTAGAAAAA 57.010 30.769 0.00 0.00 44.14 1.94
522 530 8.865420 AAATCCCTCTTAGAGACTTTTTAACC 57.135 34.615 11.32 0.00 0.00 2.85
523 531 7.569599 ATCCCTCTTAGAGACTTTTTAACCA 57.430 36.000 11.32 0.00 0.00 3.67
524 532 7.383156 TCCCTCTTAGAGACTTTTTAACCAA 57.617 36.000 11.32 0.00 0.00 3.67
525 533 7.808218 TCCCTCTTAGAGACTTTTTAACCAAA 58.192 34.615 11.32 0.00 0.00 3.28
526 534 8.445588 TCCCTCTTAGAGACTTTTTAACCAAAT 58.554 33.333 11.32 0.00 0.00 2.32
527 535 9.734984 CCCTCTTAGAGACTTTTTAACCAAATA 57.265 33.333 11.32 0.00 0.00 1.40
532 540 9.734984 TTAGAGACTTTTTAACCAAATAGGAGG 57.265 33.333 0.00 0.00 41.22 4.30
533 541 7.175797 AGAGACTTTTTAACCAAATAGGAGGG 58.824 38.462 0.00 0.00 41.22 4.30
534 542 7.018249 AGAGACTTTTTAACCAAATAGGAGGGA 59.982 37.037 0.00 0.00 41.22 4.20
535 543 6.946583 AGACTTTTTAACCAAATAGGAGGGAC 59.053 38.462 0.00 0.00 41.22 4.46
537 545 7.992295 ACTTTTTAACCAAATAGGAGGGACTA 58.008 34.615 0.00 0.00 41.55 2.59
538 546 7.886970 ACTTTTTAACCAAATAGGAGGGACTAC 59.113 37.037 0.00 0.00 41.55 2.73
549 557 4.533001 GGAGGGACTACTAGGGACTAAA 57.467 50.000 0.00 0.00 39.34 1.85
550 558 4.876580 GGAGGGACTACTAGGGACTAAAA 58.123 47.826 0.00 0.00 39.34 1.52
551 559 4.894705 GGAGGGACTACTAGGGACTAAAAG 59.105 50.000 0.00 0.00 39.34 2.27
552 560 5.517924 GAGGGACTACTAGGGACTAAAAGT 58.482 45.833 0.00 0.00 39.34 2.66
553 561 5.913277 AGGGACTACTAGGGACTAAAAGTT 58.087 41.667 0.00 0.00 37.45 2.66
554 562 5.720520 AGGGACTACTAGGGACTAAAAGTTG 59.279 44.000 0.00 0.00 37.45 3.16
555 563 5.417811 GGACTACTAGGGACTAAAAGTTGC 58.582 45.833 0.00 0.00 42.17 4.17
556 564 5.187381 GGACTACTAGGGACTAAAAGTTGCT 59.813 44.000 0.00 0.00 42.17 3.91
557 565 6.295745 GGACTACTAGGGACTAAAAGTTGCTT 60.296 42.308 0.00 0.00 42.17 3.91
558 566 7.075851 ACTACTAGGGACTAAAAGTTGCTTT 57.924 36.000 0.00 0.00 42.17 3.51
559 567 7.515586 ACTACTAGGGACTAAAAGTTGCTTTT 58.484 34.615 10.99 10.99 42.17 2.27
560 568 7.997223 ACTACTAGGGACTAAAAGTTGCTTTTT 59.003 33.333 11.39 0.00 42.17 1.94
561 569 7.039313 ACTAGGGACTAAAAGTTGCTTTTTG 57.961 36.000 11.39 11.68 42.17 2.44
562 570 5.276461 AGGGACTAAAAGTTGCTTTTTGG 57.724 39.130 11.39 8.20 40.23 3.28
563 571 4.100963 AGGGACTAAAAGTTGCTTTTTGGG 59.899 41.667 11.39 6.28 40.23 4.12
564 572 4.100344 GGGACTAAAAGTTGCTTTTTGGGA 59.900 41.667 11.39 0.00 40.23 4.37
565 573 5.047847 GGACTAAAAGTTGCTTTTTGGGAC 58.952 41.667 11.39 6.71 40.23 4.46
566 574 5.163447 GGACTAAAAGTTGCTTTTTGGGACT 60.163 40.000 11.39 0.00 40.23 3.85
567 575 6.040054 GGACTAAAAGTTGCTTTTTGGGACTA 59.960 38.462 11.39 0.00 40.23 2.59
568 576 7.412853 ACTAAAAGTTGCTTTTTGGGACTAA 57.587 32.000 11.39 0.00 40.23 2.24
569 577 7.842982 ACTAAAAGTTGCTTTTTGGGACTAAA 58.157 30.769 11.39 0.00 40.23 1.85
570 578 8.482943 ACTAAAAGTTGCTTTTTGGGACTAAAT 58.517 29.630 11.39 0.00 40.23 1.40
571 579 7.552458 AAAAGTTGCTTTTTGGGACTAAATG 57.448 32.000 1.46 0.00 40.23 2.32
572 580 6.478512 AAGTTGCTTTTTGGGACTAAATGA 57.521 33.333 0.00 0.00 0.00 2.57
573 581 6.478512 AGTTGCTTTTTGGGACTAAATGAA 57.521 33.333 0.00 0.00 0.00 2.57
574 582 6.515832 AGTTGCTTTTTGGGACTAAATGAAG 58.484 36.000 0.00 0.00 0.00 3.02
575 583 6.323739 AGTTGCTTTTTGGGACTAAATGAAGA 59.676 34.615 0.00 0.00 0.00 2.87
576 584 6.723298 TGCTTTTTGGGACTAAATGAAGAA 57.277 33.333 0.00 0.00 0.00 2.52
577 585 6.748132 TGCTTTTTGGGACTAAATGAAGAAG 58.252 36.000 0.00 0.00 0.00 2.85
578 586 6.549364 TGCTTTTTGGGACTAAATGAAGAAGA 59.451 34.615 0.00 0.00 0.00 2.87
579 587 6.863645 GCTTTTTGGGACTAAATGAAGAAGAC 59.136 38.462 0.00 0.00 0.00 3.01
580 588 7.255625 GCTTTTTGGGACTAAATGAAGAAGACT 60.256 37.037 0.00 0.00 0.00 3.24
581 589 9.284968 CTTTTTGGGACTAAATGAAGAAGACTA 57.715 33.333 0.00 0.00 0.00 2.59
582 590 9.807921 TTTTTGGGACTAAATGAAGAAGACTAT 57.192 29.630 0.00 0.00 0.00 2.12
583 591 9.449719 TTTTGGGACTAAATGAAGAAGACTATC 57.550 33.333 0.00 0.00 0.00 2.08
584 592 7.733773 TGGGACTAAATGAAGAAGACTATCA 57.266 36.000 0.00 0.00 0.00 2.15
585 593 8.146053 TGGGACTAAATGAAGAAGACTATCAA 57.854 34.615 0.00 0.00 0.00 2.57
586 594 8.260818 TGGGACTAAATGAAGAAGACTATCAAG 58.739 37.037 0.00 0.00 0.00 3.02
587 595 7.713073 GGGACTAAATGAAGAAGACTATCAAGG 59.287 40.741 0.00 0.00 0.00 3.61
588 596 8.478877 GGACTAAATGAAGAAGACTATCAAGGA 58.521 37.037 0.00 0.00 0.00 3.36
589 597 9.877178 GACTAAATGAAGAAGACTATCAAGGAA 57.123 33.333 0.00 0.00 0.00 3.36
593 601 8.785329 AATGAAGAAGACTATCAAGGAAAGTC 57.215 34.615 0.00 0.00 39.95 3.01
594 602 6.702329 TGAAGAAGACTATCAAGGAAAGTCC 58.298 40.000 0.00 0.00 40.42 3.85
613 621 3.725634 TCCTTTTTGGGACTTTTTGGGA 58.274 40.909 0.00 0.00 36.20 4.37
614 622 3.452990 TCCTTTTTGGGACTTTTTGGGAC 59.547 43.478 0.00 0.00 36.20 4.46
615 623 3.454447 CCTTTTTGGGACTTTTTGGGACT 59.546 43.478 0.00 0.00 0.00 3.85
616 624 4.080582 CCTTTTTGGGACTTTTTGGGACTT 60.081 41.667 0.00 0.00 0.00 3.01
617 625 5.496556 CTTTTTGGGACTTTTTGGGACTTT 58.503 37.500 0.00 0.00 0.00 2.66
618 626 5.506730 TTTTGGGACTTTTTGGGACTTTT 57.493 34.783 0.00 0.00 0.00 2.27
619 627 4.746535 TTGGGACTTTTTGGGACTTTTC 57.253 40.909 0.00 0.00 0.00 2.29
620 628 3.035363 TGGGACTTTTTGGGACTTTTCC 58.965 45.455 0.00 0.00 41.95 3.13
621 629 3.035363 GGGACTTTTTGGGACTTTTCCA 58.965 45.455 0.00 0.00 44.98 3.53
622 630 3.452990 GGGACTTTTTGGGACTTTTCCAA 59.547 43.478 0.00 0.00 44.98 3.53
623 631 4.439057 GGACTTTTTGGGACTTTTCCAAC 58.561 43.478 0.00 0.00 44.98 3.77
624 632 4.081365 GGACTTTTTGGGACTTTTCCAACA 60.081 41.667 0.00 0.00 44.98 3.33
625 633 5.483811 GACTTTTTGGGACTTTTCCAACAA 58.516 37.500 0.00 0.00 44.98 2.83
626 634 6.061022 ACTTTTTGGGACTTTTCCAACAAT 57.939 33.333 0.00 0.00 44.98 2.71
627 635 5.879777 ACTTTTTGGGACTTTTCCAACAATG 59.120 36.000 0.00 0.00 44.98 2.82
628 636 3.467374 TTGGGACTTTTCCAACAATGC 57.533 42.857 0.00 0.00 44.98 3.56
629 637 1.691434 TGGGACTTTTCCAACAATGCC 59.309 47.619 0.00 0.00 44.98 4.40
630 638 1.001974 GGGACTTTTCCAACAATGCCC 59.998 52.381 0.00 0.00 44.98 5.36
631 639 1.001974 GGACTTTTCCAACAATGCCCC 59.998 52.381 0.00 0.00 42.30 5.80
632 640 1.970640 GACTTTTCCAACAATGCCCCT 59.029 47.619 0.00 0.00 0.00 4.79
633 641 1.970640 ACTTTTCCAACAATGCCCCTC 59.029 47.619 0.00 0.00 0.00 4.30
634 642 1.276138 CTTTTCCAACAATGCCCCTCC 59.724 52.381 0.00 0.00 0.00 4.30
635 643 0.544120 TTTCCAACAATGCCCCTCCC 60.544 55.000 0.00 0.00 0.00 4.30
636 644 1.442886 TTCCAACAATGCCCCTCCCT 61.443 55.000 0.00 0.00 0.00 4.20
637 645 1.683365 CCAACAATGCCCCTCCCTG 60.683 63.158 0.00 0.00 0.00 4.45
638 646 2.037847 AACAATGCCCCTCCCTGC 59.962 61.111 0.00 0.00 0.00 4.85
639 647 2.855770 AACAATGCCCCTCCCTGCA 61.856 57.895 0.00 0.00 42.52 4.41
640 648 2.757099 CAATGCCCCTCCCTGCAC 60.757 66.667 0.00 0.00 40.88 4.57
641 649 4.066139 AATGCCCCTCCCTGCACC 62.066 66.667 0.00 0.00 40.88 5.01
645 653 3.350163 CCCCTCCCTGCACCCATT 61.350 66.667 0.00 0.00 0.00 3.16
646 654 2.043652 CCCTCCCTGCACCCATTG 60.044 66.667 0.00 0.00 0.00 2.82
669 677 2.600173 CCGCCCCATGGTGTTGTT 60.600 61.111 11.73 0.00 40.77 2.83
670 678 2.206536 CCGCCCCATGGTGTTGTTT 61.207 57.895 11.73 0.00 40.77 2.83
671 679 1.006337 CGCCCCATGGTGTTGTTTG 60.006 57.895 11.73 0.00 37.37 2.93
672 680 1.370810 GCCCCATGGTGTTGTTTGG 59.629 57.895 11.73 2.83 0.00 3.28
673 681 1.406860 GCCCCATGGTGTTGTTTGGT 61.407 55.000 11.73 0.00 0.00 3.67
674 682 1.127343 CCCCATGGTGTTGTTTGGTT 58.873 50.000 11.73 0.00 0.00 3.67
675 683 1.202627 CCCCATGGTGTTGTTTGGTTG 60.203 52.381 11.73 0.00 0.00 3.77
676 684 1.580815 CCATGGTGTTGTTTGGTTGC 58.419 50.000 2.57 0.00 0.00 4.17
677 685 1.138661 CCATGGTGTTGTTTGGTTGCT 59.861 47.619 2.57 0.00 0.00 3.91
678 686 2.363680 CCATGGTGTTGTTTGGTTGCTA 59.636 45.455 2.57 0.00 0.00 3.49
679 687 3.006752 CCATGGTGTTGTTTGGTTGCTAT 59.993 43.478 2.57 0.00 0.00 2.97
680 688 4.502950 CCATGGTGTTGTTTGGTTGCTATT 60.503 41.667 2.57 0.00 0.00 1.73
681 689 4.744795 TGGTGTTGTTTGGTTGCTATTT 57.255 36.364 0.00 0.00 0.00 1.40
682 690 5.091261 TGGTGTTGTTTGGTTGCTATTTT 57.909 34.783 0.00 0.00 0.00 1.82
683 691 5.491982 TGGTGTTGTTTGGTTGCTATTTTT 58.508 33.333 0.00 0.00 0.00 1.94
706 714 7.513560 TTTTGTATACTAGGGGTAACATGGT 57.486 36.000 4.17 0.00 39.74 3.55
707 715 6.736110 TTGTATACTAGGGGTAACATGGTC 57.264 41.667 4.17 0.00 39.74 4.02
708 716 6.034442 TGTATACTAGGGGTAACATGGTCT 57.966 41.667 4.17 0.00 39.74 3.85
709 717 6.446451 TGTATACTAGGGGTAACATGGTCTT 58.554 40.000 4.17 0.00 39.74 3.01
710 718 6.904654 TGTATACTAGGGGTAACATGGTCTTT 59.095 38.462 4.17 0.00 39.74 2.52
711 719 6.903340 ATACTAGGGGTAACATGGTCTTTT 57.097 37.500 0.00 0.00 39.74 2.27
712 720 8.927411 GTATACTAGGGGTAACATGGTCTTTTA 58.073 37.037 0.00 0.00 39.74 1.52
713 721 6.058553 ACTAGGGGTAACATGGTCTTTTAC 57.941 41.667 0.00 0.00 39.74 2.01
714 722 5.548836 ACTAGGGGTAACATGGTCTTTTACA 59.451 40.000 0.00 0.00 39.74 2.41
715 723 5.530176 AGGGGTAACATGGTCTTTTACAT 57.470 39.130 0.00 0.00 39.74 2.29
725 733 7.488187 CATGGTCTTTTACATGTCATCTAGG 57.512 40.000 0.00 0.00 39.59 3.02
726 734 5.989477 TGGTCTTTTACATGTCATCTAGGG 58.011 41.667 0.00 0.00 0.00 3.53
727 735 5.724370 TGGTCTTTTACATGTCATCTAGGGA 59.276 40.000 0.00 0.00 0.00 4.20
728 736 6.127054 TGGTCTTTTACATGTCATCTAGGGAG 60.127 42.308 0.00 0.00 0.00 4.30
729 737 6.284459 GTCTTTTACATGTCATCTAGGGAGG 58.716 44.000 0.00 0.00 0.00 4.30
730 738 5.366768 TCTTTTACATGTCATCTAGGGAGGG 59.633 44.000 0.00 0.00 0.00 4.30
731 739 4.552883 TTACATGTCATCTAGGGAGGGA 57.447 45.455 0.00 0.00 0.00 4.20
732 740 2.683768 ACATGTCATCTAGGGAGGGAC 58.316 52.381 0.00 0.00 33.26 4.46
734 742 3.467483 ACATGTCATCTAGGGAGGGACTA 59.533 47.826 0.00 0.00 41.55 2.59
735 743 3.885976 TGTCATCTAGGGAGGGACTAG 57.114 52.381 0.00 0.00 41.55 2.57
736 744 2.447429 TGTCATCTAGGGAGGGACTAGG 59.553 54.545 0.00 0.00 41.55 3.02
737 745 2.074579 TCATCTAGGGAGGGACTAGGG 58.925 57.143 0.00 0.00 41.55 3.53
738 746 2.074579 CATCTAGGGAGGGACTAGGGA 58.925 57.143 0.00 0.00 41.55 4.20
739 747 1.532038 TCTAGGGAGGGACTAGGGAC 58.468 60.000 0.00 0.00 41.55 4.46
740 748 1.012302 TCTAGGGAGGGACTAGGGACT 59.988 57.143 0.00 0.00 41.55 3.85
741 749 1.860906 CTAGGGAGGGACTAGGGACTT 59.139 57.143 0.00 0.00 41.55 3.01
742 750 1.102938 AGGGAGGGACTAGGGACTTT 58.897 55.000 0.00 0.00 41.55 2.66
743 751 1.441553 AGGGAGGGACTAGGGACTTTT 59.558 52.381 0.00 0.00 41.55 2.27
744 752 2.157833 AGGGAGGGACTAGGGACTTTTT 60.158 50.000 0.00 0.00 41.55 1.94
745 753 3.080153 AGGGAGGGACTAGGGACTTTTTA 59.920 47.826 0.00 0.00 41.55 1.52
746 754 3.455177 GGGAGGGACTAGGGACTTTTTAG 59.545 52.174 0.00 0.00 41.55 1.85
747 755 4.102598 GGAGGGACTAGGGACTTTTTAGT 58.897 47.826 0.00 0.00 41.55 2.24
748 756 4.161942 GGAGGGACTAGGGACTTTTTAGTC 59.838 50.000 0.00 3.01 41.55 2.59
760 768 6.459670 GACTTTTTAGTCCCTGGAAACAAA 57.540 37.500 0.00 0.00 34.46 2.83
761 769 6.216801 ACTTTTTAGTCCCTGGAAACAAAC 57.783 37.500 0.00 0.00 42.06 2.93
762 770 5.717654 ACTTTTTAGTCCCTGGAAACAAACA 59.282 36.000 0.00 0.00 42.06 2.83
763 771 5.845391 TTTTAGTCCCTGGAAACAAACAG 57.155 39.130 0.00 0.00 42.06 3.16
769 777 1.620822 CTGGAAACAAACAGGGAGGG 58.379 55.000 0.00 0.00 42.06 4.30
770 778 1.144913 CTGGAAACAAACAGGGAGGGA 59.855 52.381 0.00 0.00 42.06 4.20
771 779 1.133606 TGGAAACAAACAGGGAGGGAC 60.134 52.381 0.00 0.00 37.44 4.46
772 780 3.504636 TGGAAACAAACAGGGAGGGACT 61.505 50.000 0.00 0.00 39.11 3.85
773 781 2.424379 GGAAACAAACAGGGAGGGACTT 60.424 50.000 0.00 0.00 41.55 3.01
774 782 3.296854 GAAACAAACAGGGAGGGACTTT 58.703 45.455 0.00 0.00 41.55 2.66
775 783 3.398318 AACAAACAGGGAGGGACTTTT 57.602 42.857 0.00 0.00 41.55 2.27
776 784 3.398318 ACAAACAGGGAGGGACTTTTT 57.602 42.857 0.00 0.00 41.55 1.94
777 785 4.529716 ACAAACAGGGAGGGACTTTTTA 57.470 40.909 0.00 0.00 41.55 1.52
778 786 4.874199 ACAAACAGGGAGGGACTTTTTAA 58.126 39.130 0.00 0.00 41.55 1.52
779 787 5.464069 ACAAACAGGGAGGGACTTTTTAAT 58.536 37.500 0.00 0.00 41.55 1.40
780 788 5.304357 ACAAACAGGGAGGGACTTTTTAATG 59.696 40.000 0.00 0.00 41.55 1.90
781 789 5.333566 AACAGGGAGGGACTTTTTAATGA 57.666 39.130 0.00 0.00 41.55 2.57
782 790 4.663334 ACAGGGAGGGACTTTTTAATGAC 58.337 43.478 0.00 0.00 41.55 3.06
783 791 4.354087 ACAGGGAGGGACTTTTTAATGACT 59.646 41.667 0.00 0.00 41.55 3.41
784 792 5.550403 ACAGGGAGGGACTTTTTAATGACTA 59.450 40.000 0.00 0.00 41.55 2.59
785 793 6.116126 CAGGGAGGGACTTTTTAATGACTAG 58.884 44.000 0.00 0.00 41.55 2.57
786 794 6.030082 AGGGAGGGACTTTTTAATGACTAGA 58.970 40.000 0.00 0.00 41.55 2.43
787 795 6.504279 AGGGAGGGACTTTTTAATGACTAGAA 59.496 38.462 0.00 0.00 41.55 2.10
788 796 7.018249 AGGGAGGGACTTTTTAATGACTAGAAA 59.982 37.037 0.00 0.00 41.55 2.52
789 797 7.834681 GGGAGGGACTTTTTAATGACTAGAAAT 59.165 37.037 0.00 0.00 41.55 2.17
790 798 9.244292 GGAGGGACTTTTTAATGACTAGAAATT 57.756 33.333 0.00 0.00 41.55 1.82
814 822 6.644248 TTTTAGTTGGGACTAGAAAAAGGC 57.356 37.500 0.00 0.00 39.43 4.35
815 823 3.876309 AGTTGGGACTAGAAAAAGGCA 57.124 42.857 0.00 0.00 33.32 4.75
816 824 4.388577 AGTTGGGACTAGAAAAAGGCAT 57.611 40.909 0.00 0.00 33.32 4.40
817 825 5.514500 AGTTGGGACTAGAAAAAGGCATA 57.486 39.130 0.00 0.00 33.32 3.14
818 826 5.501156 AGTTGGGACTAGAAAAAGGCATAG 58.499 41.667 0.00 0.00 33.32 2.23
819 827 4.503714 TGGGACTAGAAAAAGGCATAGG 57.496 45.455 0.00 0.00 0.00 2.57
820 828 4.108570 TGGGACTAGAAAAAGGCATAGGA 58.891 43.478 0.00 0.00 0.00 2.94
821 829 4.080526 TGGGACTAGAAAAAGGCATAGGAC 60.081 45.833 0.00 0.00 0.00 3.85
822 830 4.164413 GGGACTAGAAAAAGGCATAGGACT 59.836 45.833 0.00 0.00 0.00 3.85
824 832 6.126854 GGGACTAGAAAAAGGCATAGGACTTA 60.127 42.308 0.00 0.00 43.25 2.24
825 833 7.420330 GGGACTAGAAAAAGGCATAGGACTTAT 60.420 40.741 0.00 0.00 43.25 1.73
826 834 7.442666 GGACTAGAAAAAGGCATAGGACTTATG 59.557 40.741 0.00 0.28 43.25 1.90
827 835 8.090788 ACTAGAAAAAGGCATAGGACTTATGA 57.909 34.615 8.67 0.00 43.25 2.15
828 836 8.548877 ACTAGAAAAAGGCATAGGACTTATGAA 58.451 33.333 8.67 0.00 43.25 2.57
829 837 7.631717 AGAAAAAGGCATAGGACTTATGAAC 57.368 36.000 8.67 1.05 43.25 3.18
830 838 6.603599 AGAAAAAGGCATAGGACTTATGAACC 59.396 38.462 8.67 1.64 43.25 3.62
831 839 5.450818 AAAGGCATAGGACTTATGAACCA 57.549 39.130 8.67 0.00 43.25 3.67
832 840 5.450818 AAGGCATAGGACTTATGAACCAA 57.549 39.130 8.67 0.00 41.85 3.67
833 841 5.450818 AGGCATAGGACTTATGAACCAAA 57.549 39.130 8.67 0.00 41.45 3.28
834 842 5.193679 AGGCATAGGACTTATGAACCAAAC 58.806 41.667 8.67 0.00 41.45 2.93
835 843 4.947388 GGCATAGGACTTATGAACCAAACA 59.053 41.667 8.67 0.00 41.45 2.83
836 844 5.066505 GGCATAGGACTTATGAACCAAACAG 59.933 44.000 8.67 0.00 41.45 3.16
837 845 5.066505 GCATAGGACTTATGAACCAAACAGG 59.933 44.000 8.67 0.00 41.45 4.00
838 846 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
839 847 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
840 848 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
841 849 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
842 850 2.507407 TATGAACCAAACAGGGCCTC 57.493 50.000 0.95 0.00 43.89 4.70
843 851 0.482446 ATGAACCAAACAGGGCCTCA 59.518 50.000 0.95 0.00 43.89 3.86
844 852 0.260230 TGAACCAAACAGGGCCTCAA 59.740 50.000 0.95 0.00 43.89 3.02
845 853 1.342474 TGAACCAAACAGGGCCTCAAA 60.342 47.619 0.95 0.00 43.89 2.69
846 854 1.970640 GAACCAAACAGGGCCTCAAAT 59.029 47.619 0.95 0.00 43.89 2.32
890 898 0.395586 GCATATGGGCCAGGTTCACA 60.396 55.000 13.78 0.00 0.00 3.58
1232 1509 4.050934 CGCCCGCCAACCTTTTCC 62.051 66.667 0.00 0.00 0.00 3.13
1343 1686 2.496817 GAGCTCGCGGACTCCATT 59.503 61.111 15.69 0.00 0.00 3.16
1433 1776 3.799755 GCCGGTGCGCTCGATTTT 61.800 61.111 21.41 0.00 0.00 1.82
1455 1803 5.794687 TGTTCGCCACTATTCAATTACTG 57.205 39.130 0.00 0.00 0.00 2.74
1501 1850 1.732259 GCGAACCTGTGACATGTTAGG 59.268 52.381 18.01 18.01 36.39 2.69
1546 1900 2.999355 GGAAGCTTACTGTTCTGCTCTG 59.001 50.000 0.00 0.00 34.38 3.35
1643 1998 2.317609 CGTGCTCAACCTTGACCCG 61.318 63.158 0.00 0.00 32.90 5.28
1724 2079 3.713764 AGGAGGTGATGAAAGAGTATGGG 59.286 47.826 0.00 0.00 0.00 4.00
1796 2152 3.200825 AGTTTGATGAGGTACCCATCCTG 59.799 47.826 27.11 0.00 43.24 3.86
1804 2160 4.838423 TGAGGTACCCATCCTGTATGTATG 59.162 45.833 8.74 0.00 35.20 2.39
1832 2188 6.156748 ACGTCTAGAATGGTAATGTGCATA 57.843 37.500 0.00 0.00 0.00 3.14
1833 2189 6.216569 ACGTCTAGAATGGTAATGTGCATAG 58.783 40.000 0.00 0.00 0.00 2.23
1849 2205 5.181811 TGTGCATAGTTGAAATCCTCTGTTG 59.818 40.000 0.00 0.00 0.00 3.33
1863 2221 3.891366 CCTCTGTTGGGCTATAAAATGGG 59.109 47.826 0.00 0.00 0.00 4.00
1914 2298 9.474920 TCTTTTTGGTAATTGATTCATGTCAAC 57.525 29.630 1.17 0.00 40.60 3.18
2042 2478 3.244156 TCTGCAAAATTTGTATGCTGCG 58.756 40.909 13.07 5.69 40.66 5.18
2063 2499 1.065647 TTCCGGGTATTTGGGACACA 58.934 50.000 0.00 0.00 39.29 3.72
2584 3475 1.409064 CATTTGAGCTGCCATGCTGAT 59.591 47.619 0.00 0.00 44.17 2.90
2703 5301 7.234661 TCCTTCAAAGTTTTTGTAACTTGGT 57.765 32.000 3.88 0.00 40.10 3.67
2886 5486 3.676646 GCACTGGAGTTGATGCATTTTTC 59.323 43.478 0.00 0.00 38.00 2.29
2935 5535 7.331791 AGAATACATGGAGACTTACAGGTTTC 58.668 38.462 0.00 7.63 33.32 2.78
2953 5553 8.432805 ACAGGTTTCTCCCTTATGATATAGTTG 58.567 37.037 0.00 0.00 36.75 3.16
2955 5555 9.004231 AGGTTTCTCCCTTATGATATAGTTGTT 57.996 33.333 0.00 0.00 36.75 2.83
2978 5578 2.060326 TTGATGAACGGAGTGTCGAC 57.940 50.000 9.11 9.11 45.00 4.20
2979 5579 0.109919 TGATGAACGGAGTGTCGACG 60.110 55.000 11.62 0.31 45.00 5.12
2981 5581 2.804090 GAACGGAGTGTCGACGCC 60.804 66.667 24.75 17.14 45.00 5.68
3118 5723 6.024563 AGACTGAGGAGAGATATGGAGAAA 57.975 41.667 0.00 0.00 0.00 2.52
3156 5761 3.011085 TGCTCAGCACTGGTTTGAG 57.989 52.632 0.00 7.32 40.93 3.02
3160 5765 1.004044 CTCAGCACTGGTTTGAGGGAT 59.996 52.381 0.00 0.00 35.75 3.85
3185 5790 3.726557 TTCCTGCCTCAGAAATGATGT 57.273 42.857 0.00 0.00 32.44 3.06
3188 5793 2.089201 CTGCCTCAGAAATGATGTGCA 58.911 47.619 0.00 0.00 32.44 4.57
3229 5834 1.208165 AGGAGGCGGTGGAGGATTTT 61.208 55.000 0.00 0.00 0.00 1.82
3232 5837 1.209747 GAGGCGGTGGAGGATTTTAGT 59.790 52.381 0.00 0.00 0.00 2.24
3265 5870 6.869388 AGATTGATGACGATGATGATGAAGAG 59.131 38.462 0.00 0.00 0.00 2.85
3285 5893 2.167487 AGGAAGACGAAGGAGAAGATGC 59.833 50.000 0.00 0.00 0.00 3.91
3318 5926 8.658840 ACTCATTTTGGCCTTTAAGGTATTTA 57.341 30.769 13.03 0.00 37.80 1.40
3371 6223 6.466097 GCGCTTTAAAGATGTTGTCATTAGTC 59.534 38.462 19.48 0.00 34.06 2.59
3390 6249 5.127693 AGTCGAATATCTATCACAGCCAC 57.872 43.478 0.00 0.00 0.00 5.01
3394 6253 1.338107 TATCTATCACAGCCACCCGG 58.662 55.000 0.00 0.00 0.00 5.73
4552 8504 2.184533 GGGAAAACCAAACATAGGGGG 58.815 52.381 0.00 0.00 39.85 5.40
4764 8716 1.439644 CAGCCTCGTTCTCTAGCCC 59.560 63.158 0.00 0.00 0.00 5.19
5409 9362 1.377202 CTTGCTCCTGCGCCCTTTA 60.377 57.895 4.18 0.00 43.34 1.85
5410 9363 0.960364 CTTGCTCCTGCGCCCTTTAA 60.960 55.000 4.18 0.00 43.34 1.52
5411 9364 0.538516 TTGCTCCTGCGCCCTTTAAA 60.539 50.000 4.18 0.00 43.34 1.52
5412 9365 0.960364 TGCTCCTGCGCCCTTTAAAG 60.960 55.000 4.18 8.32 43.34 1.85
5413 9366 1.657751 GCTCCTGCGCCCTTTAAAGG 61.658 60.000 25.02 25.02 46.06 3.11
5427 9380 5.791336 CTTTAAAGGAAAACCTTGCTCCT 57.209 39.130 7.37 0.00 41.51 3.69
5428 9381 5.529581 TTTAAAGGAAAACCTTGCTCCTG 57.470 39.130 2.18 0.00 39.59 3.86
5429 9382 1.332195 AAGGAAAACCTTGCTCCTGC 58.668 50.000 0.00 0.00 39.59 4.85
5438 9391 3.005539 TGCTCCTGCACCCTCTCC 61.006 66.667 0.00 0.00 45.31 3.71
5439 9392 3.791586 GCTCCTGCACCCTCTCCC 61.792 72.222 0.00 0.00 39.41 4.30
5440 9393 3.465403 CTCCTGCACCCTCTCCCG 61.465 72.222 0.00 0.00 0.00 5.14
5491 9444 9.211410 ACATAATCATGAATTAAATGGGGTTCA 57.789 29.630 0.00 0.00 33.59 3.18
5540 9497 8.861086 ACATAGGCTATCTAATTCATATACGGG 58.139 37.037 3.47 0.00 0.00 5.28
5552 9509 2.389962 TATACGGGTTCACACTTGGC 57.610 50.000 0.00 0.00 0.00 4.52
5574 9531 5.348451 GGCGTGTAGATTCATTTTGCAAATT 59.652 36.000 13.65 6.74 0.00 1.82
5584 9541 9.257865 GATTCATTTTGCAAATTTGAAATCTCG 57.742 29.630 27.76 7.01 0.00 4.04
5585 9542 6.592166 TCATTTTGCAAATTTGAAATCTCGC 58.408 32.000 22.31 4.19 0.00 5.03
5595 9552 0.105039 GAAATCTCGCCGAGGGTGAT 59.895 55.000 15.08 0.00 41.66 3.06
5638 9626 9.565213 GAGATGACTTTAATGTTGATTTTCCTG 57.435 33.333 0.00 0.00 0.00 3.86
5660 9648 6.881065 CCTGTGAATGGAAAGAAGATTCTGTA 59.119 38.462 0.00 0.00 37.65 2.74
5677 9665 2.868583 CTGTAACTCCATTCTGATGCCG 59.131 50.000 0.00 0.00 31.67 5.69
5691 9679 1.398390 GATGCCGTTAAGCTGTCTTGG 59.602 52.381 0.00 0.00 33.85 3.61
5711 9699 1.815003 GCTCTTTGACAGGTTGATGGG 59.185 52.381 0.00 0.00 0.00 4.00
5716 9704 0.541392 TGACAGGTTGATGGGATCGG 59.459 55.000 0.00 0.00 0.00 4.18
5732 9720 2.125350 GGACAGAAGAGGGCGCTG 60.125 66.667 8.56 0.00 35.81 5.18
5737 9725 1.990060 AGAAGAGGGCGCTGGCTTA 60.990 57.895 8.56 0.00 39.81 3.09
5803 9807 3.003793 TGCTGTCGATATCACTCTGTAGC 59.996 47.826 3.12 5.81 0.00 3.58
5804 9808 3.003793 GCTGTCGATATCACTCTGTAGCA 59.996 47.826 3.12 0.00 0.00 3.49
5805 9809 4.782156 CTGTCGATATCACTCTGTAGCAG 58.218 47.826 3.12 0.00 0.00 4.24
5806 9810 4.200092 TGTCGATATCACTCTGTAGCAGT 58.800 43.478 3.12 0.00 32.61 4.40
5829 9833 1.924320 GCTGACCGTCTGACGCTAGT 61.924 60.000 23.87 16.38 40.91 2.57
5897 9901 1.500303 TCAATCCCATTCCCATCCCAG 59.500 52.381 0.00 0.00 0.00 4.45
5977 10108 2.200067 CAAACAAAACAATCAGCCGCA 58.800 42.857 0.00 0.00 0.00 5.69
5978 10109 2.138596 AACAAAACAATCAGCCGCAG 57.861 45.000 0.00 0.00 0.00 5.18
5979 10110 0.318955 ACAAAACAATCAGCCGCAGC 60.319 50.000 0.00 0.00 40.32 5.25
5980 10111 1.010419 CAAAACAATCAGCCGCAGCC 61.010 55.000 0.00 0.00 41.25 4.85
5981 10112 2.476534 AAAACAATCAGCCGCAGCCG 62.477 55.000 0.00 0.00 41.25 5.52
6002 10133 2.892374 CTGTGCCATCACTGTCGATAA 58.108 47.619 0.00 0.00 43.49 1.75
6003 10134 3.461061 CTGTGCCATCACTGTCGATAAT 58.539 45.455 0.00 0.00 43.49 1.28
6004 10135 3.872696 TGTGCCATCACTGTCGATAATT 58.127 40.909 0.00 0.00 43.49 1.40
6005 10136 5.017294 TGTGCCATCACTGTCGATAATTA 57.983 39.130 0.00 0.00 43.49 1.40
6007 10138 5.696270 TGTGCCATCACTGTCGATAATTATC 59.304 40.000 14.45 14.45 43.49 1.75
6008 10139 5.696270 GTGCCATCACTGTCGATAATTATCA 59.304 40.000 22.22 9.20 40.03 2.15
6018 10150 6.707290 TGTCGATAATTATCATTGGTAGGGG 58.293 40.000 22.22 5.16 32.98 4.79
6027 10159 8.622572 ATTATCATTGGTAGGGGATTTTGTTT 57.377 30.769 0.00 0.00 0.00 2.83
6031 10163 3.309296 TGGTAGGGGATTTTGTTTGCAA 58.691 40.909 0.00 0.00 0.00 4.08
6075 10211 3.136750 CTCTCCCCTGATCTGCCG 58.863 66.667 0.00 0.00 0.00 5.69
6123 10260 0.744414 CGTGACGCCATTGATTCCCT 60.744 55.000 0.00 0.00 0.00 4.20
6125 10262 0.327924 TGACGCCATTGATTCCCTGT 59.672 50.000 0.00 0.00 0.00 4.00
6167 10304 6.317789 TCCACTCTGAAACTGCTATTTTTG 57.682 37.500 0.00 0.00 0.00 2.44
6168 10305 6.061441 TCCACTCTGAAACTGCTATTTTTGA 58.939 36.000 0.00 0.00 0.00 2.69
6182 10319 8.510243 TGCTATTTTTGAGCTTGATCTGAATA 57.490 30.769 0.00 0.00 40.76 1.75
6197 10334 0.535335 GAATACCTGCCCGTGTGAGA 59.465 55.000 0.00 0.00 0.00 3.27
6233 10370 2.360225 ACTGCCATGCACGCATCA 60.360 55.556 10.51 0.00 35.25 3.07
6328 13487 0.317020 GCATTTATCGCCGGACAAGC 60.317 55.000 5.05 0.00 0.00 4.01
6346 13505 0.247736 GCAAGAAGAAGAGCGGGAGA 59.752 55.000 0.00 0.00 0.00 3.71
6347 13506 2.003196 CAAGAAGAAGAGCGGGAGAC 57.997 55.000 0.00 0.00 0.00 3.36
6400 13560 1.486726 GGGAATGGCGGGATAGATAGG 59.513 57.143 0.00 0.00 0.00 2.57
6481 13654 3.550842 GCTAACAACAAACAGCCTCCAAG 60.551 47.826 0.00 0.00 0.00 3.61
6528 13703 0.599204 ACAACACGTACTGGAAGGCG 60.599 55.000 0.00 0.00 39.30 5.52
6578 13954 3.980646 TTCTCACCAAATTTCACGTGG 57.019 42.857 17.00 0.00 38.46 4.94
6587 13963 4.261994 CCAAATTTCACGTGGAATTCCTGT 60.262 41.667 30.14 19.31 34.91 4.00
6659 14037 4.824166 CCGGTCGCCACGTACTCG 62.824 72.222 0.00 0.00 43.34 4.18
6751 14133 4.044484 CGCCTCCGATCCTAGCCG 62.044 72.222 0.00 0.00 36.29 5.52
6785 14172 4.749310 CAAGCCGCACCGCTCTCT 62.749 66.667 0.00 0.00 38.44 3.10
6790 14177 3.877357 CGCACCGCTCTCTCGCTA 61.877 66.667 0.00 0.00 0.00 4.26
6791 14178 2.025441 GCACCGCTCTCTCGCTAG 59.975 66.667 0.00 0.00 0.00 3.42
6792 14179 2.025441 CACCGCTCTCTCGCTAGC 59.975 66.667 4.06 4.06 35.33 3.42
6793 14180 3.213402 ACCGCTCTCTCGCTAGCC 61.213 66.667 9.66 0.00 35.22 3.93
6794 14181 3.212682 CCGCTCTCTCGCTAGCCA 61.213 66.667 9.66 0.00 35.22 4.75
6968 14362 1.539157 TCACTCTCACTCTCATGCGT 58.461 50.000 0.00 0.00 0.00 5.24
7316 14716 3.793559 CCTGCGCAGGTAGTAAACTAAT 58.206 45.455 42.09 0.00 43.61 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.515952 CTGAGTTCCAGCTCTCGCG 60.516 63.158 0.00 0.00 42.32 5.87
67 68 0.949105 CGTCAAAGAGGGGTCGTTGG 60.949 60.000 2.02 0.00 31.64 3.77
74 75 3.055819 TGAAAGATCTCGTCAAAGAGGGG 60.056 47.826 0.00 0.00 38.71 4.79
99 100 0.535102 ACAGGCTTTGTCAAGACCCG 60.535 55.000 0.00 0.00 39.16 5.28
135 138 0.817013 CGGCAAAGGCACCATGTATT 59.183 50.000 0.00 0.00 43.71 1.89
140 143 1.228552 AACTCGGCAAAGGCACCAT 60.229 52.632 0.00 0.00 43.71 3.55
294 301 3.748083 TGATGCTTTTCTGAGCTTGAGT 58.252 40.909 0.00 0.00 43.11 3.41
304 311 8.523915 TGTTTGACCATATATGATGCTTTTCT 57.476 30.769 14.54 0.00 0.00 2.52
326 333 4.655963 AGTGACTTGGTATGATGCTTGTT 58.344 39.130 0.00 0.00 0.00 2.83
400 407 6.312672 TCGTACAATTCATCATAACTGTGGTG 59.687 38.462 0.00 0.00 0.00 4.17
401 408 6.403049 TCGTACAATTCATCATAACTGTGGT 58.597 36.000 0.00 0.00 0.00 4.16
402 409 6.902224 TCGTACAATTCATCATAACTGTGG 57.098 37.500 0.00 0.00 0.00 4.17
447 455 0.032615 AAACAAACACCCCCTGAGCA 60.033 50.000 0.00 0.00 0.00 4.26
448 456 0.673985 GAAACAAACACCCCCTGAGC 59.326 55.000 0.00 0.00 0.00 4.26
453 461 1.118965 CCCTGGAAACAAACACCCCC 61.119 60.000 0.00 0.00 42.06 5.40
454 462 0.105913 TCCCTGGAAACAAACACCCC 60.106 55.000 0.00 0.00 42.06 4.95
455 463 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
456 464 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
458 466 4.528596 TCAAAAAGTCCCTGGAAACAAACA 59.471 37.500 0.00 0.00 42.06 2.83
459 467 5.079689 TCAAAAAGTCCCTGGAAACAAAC 57.920 39.130 0.00 0.00 42.06 2.93
460 468 5.188751 ACATCAAAAAGTCCCTGGAAACAAA 59.811 36.000 0.00 0.00 42.06 2.83
462 470 4.285863 ACATCAAAAAGTCCCTGGAAACA 58.714 39.130 0.00 0.00 39.59 2.83
464 472 5.076873 CCTACATCAAAAAGTCCCTGGAAA 58.923 41.667 0.00 0.00 0.00 3.13
465 473 4.508405 CCCTACATCAAAAAGTCCCTGGAA 60.508 45.833 0.00 0.00 0.00 3.53
467 475 3.010138 TCCCTACATCAAAAAGTCCCTGG 59.990 47.826 0.00 0.00 0.00 4.45
468 476 4.010349 GTCCCTACATCAAAAAGTCCCTG 58.990 47.826 0.00 0.00 0.00 4.45
469 477 3.916989 AGTCCCTACATCAAAAAGTCCCT 59.083 43.478 0.00 0.00 0.00 4.20
470 478 4.302559 AGTCCCTACATCAAAAAGTCCC 57.697 45.455 0.00 0.00 0.00 4.46
471 479 6.295719 TCTAGTCCCTACATCAAAAAGTCC 57.704 41.667 0.00 0.00 0.00 3.85
472 480 8.617290 TTTTCTAGTCCCTACATCAAAAAGTC 57.383 34.615 0.00 0.00 0.00 3.01
473 481 8.990163 TTTTTCTAGTCCCTACATCAAAAAGT 57.010 30.769 0.00 0.00 0.00 2.66
496 504 9.298250 GGTTAAAAAGTCTCTAAGAGGGATTTT 57.702 33.333 0.00 0.00 0.00 1.82
497 505 8.445588 TGGTTAAAAAGTCTCTAAGAGGGATTT 58.554 33.333 0.00 0.00 0.00 2.17
498 506 7.985589 TGGTTAAAAAGTCTCTAAGAGGGATT 58.014 34.615 0.00 0.00 0.00 3.01
499 507 7.569599 TGGTTAAAAAGTCTCTAAGAGGGAT 57.430 36.000 0.00 0.00 0.00 3.85
500 508 7.383156 TTGGTTAAAAAGTCTCTAAGAGGGA 57.617 36.000 0.00 0.00 0.00 4.20
501 509 8.637196 ATTTGGTTAAAAAGTCTCTAAGAGGG 57.363 34.615 0.00 0.00 0.00 4.30
506 514 9.734984 CCTCCTATTTGGTTAAAAAGTCTCTAA 57.265 33.333 0.00 0.00 37.07 2.10
507 515 8.326529 CCCTCCTATTTGGTTAAAAAGTCTCTA 58.673 37.037 0.00 0.00 37.07 2.43
508 516 7.018249 TCCCTCCTATTTGGTTAAAAAGTCTCT 59.982 37.037 0.00 0.00 37.07 3.10
509 517 7.120873 GTCCCTCCTATTTGGTTAAAAAGTCTC 59.879 40.741 0.00 0.00 37.07 3.36
510 518 6.946583 GTCCCTCCTATTTGGTTAAAAAGTCT 59.053 38.462 0.00 0.00 37.07 3.24
511 519 6.946583 AGTCCCTCCTATTTGGTTAAAAAGTC 59.053 38.462 0.00 0.00 37.07 3.01
512 520 6.860034 AGTCCCTCCTATTTGGTTAAAAAGT 58.140 36.000 0.00 0.00 37.07 2.66
513 521 8.107729 AGTAGTCCCTCCTATTTGGTTAAAAAG 58.892 37.037 0.00 0.00 37.07 2.27
514 522 7.992295 AGTAGTCCCTCCTATTTGGTTAAAAA 58.008 34.615 0.00 0.00 37.07 1.94
515 523 7.578458 AGTAGTCCCTCCTATTTGGTTAAAA 57.422 36.000 0.00 0.00 37.07 1.52
516 524 7.346436 CCTAGTAGTCCCTCCTATTTGGTTAAA 59.654 40.741 0.00 0.00 37.07 1.52
517 525 6.842807 CCTAGTAGTCCCTCCTATTTGGTTAA 59.157 42.308 0.00 0.00 37.07 2.01
518 526 6.379579 CCTAGTAGTCCCTCCTATTTGGTTA 58.620 44.000 0.00 0.00 37.07 2.85
519 527 5.217400 CCTAGTAGTCCCTCCTATTTGGTT 58.783 45.833 0.00 0.00 37.07 3.67
520 528 4.388804 CCCTAGTAGTCCCTCCTATTTGGT 60.389 50.000 0.00 0.00 37.07 3.67
521 529 4.140758 TCCCTAGTAGTCCCTCCTATTTGG 60.141 50.000 0.00 0.00 37.10 3.28
522 530 4.833938 GTCCCTAGTAGTCCCTCCTATTTG 59.166 50.000 0.00 0.00 0.00 2.32
523 531 4.738132 AGTCCCTAGTAGTCCCTCCTATTT 59.262 45.833 0.00 0.00 0.00 1.40
524 532 4.326610 AGTCCCTAGTAGTCCCTCCTATT 58.673 47.826 0.00 0.00 0.00 1.73
525 533 3.970514 AGTCCCTAGTAGTCCCTCCTAT 58.029 50.000 0.00 0.00 0.00 2.57
526 534 3.451677 AGTCCCTAGTAGTCCCTCCTA 57.548 52.381 0.00 0.00 0.00 2.94
527 535 2.307032 AGTCCCTAGTAGTCCCTCCT 57.693 55.000 0.00 0.00 0.00 3.69
528 536 4.533001 TTTAGTCCCTAGTAGTCCCTCC 57.467 50.000 0.00 0.00 0.00 4.30
529 537 5.517924 ACTTTTAGTCCCTAGTAGTCCCTC 58.482 45.833 0.00 0.00 0.00 4.30
530 538 5.549229 ACTTTTAGTCCCTAGTAGTCCCT 57.451 43.478 0.00 0.00 0.00 4.20
531 539 5.626347 GCAACTTTTAGTCCCTAGTAGTCCC 60.626 48.000 0.00 0.00 0.00 4.46
532 540 5.187381 AGCAACTTTTAGTCCCTAGTAGTCC 59.813 44.000 0.00 0.00 0.00 3.85
533 541 6.283544 AGCAACTTTTAGTCCCTAGTAGTC 57.716 41.667 0.00 0.00 0.00 2.59
534 542 6.683312 AAGCAACTTTTAGTCCCTAGTAGT 57.317 37.500 0.00 0.00 0.00 2.73
535 543 7.981102 AAAAGCAACTTTTAGTCCCTAGTAG 57.019 36.000 3.57 0.00 41.17 2.57
536 544 7.229907 CCAAAAAGCAACTTTTAGTCCCTAGTA 59.770 37.037 5.79 0.00 41.98 1.82
537 545 6.040504 CCAAAAAGCAACTTTTAGTCCCTAGT 59.959 38.462 5.79 0.00 41.98 2.57
538 546 6.447162 CCAAAAAGCAACTTTTAGTCCCTAG 58.553 40.000 5.79 0.00 41.98 3.02
539 547 5.303333 CCCAAAAAGCAACTTTTAGTCCCTA 59.697 40.000 5.79 0.00 41.98 3.53
540 548 4.100963 CCCAAAAAGCAACTTTTAGTCCCT 59.899 41.667 5.79 0.00 41.98 4.20
541 549 4.100344 TCCCAAAAAGCAACTTTTAGTCCC 59.900 41.667 5.79 0.00 41.98 4.46
542 550 5.047847 GTCCCAAAAAGCAACTTTTAGTCC 58.952 41.667 5.79 0.00 41.98 3.85
543 551 5.902681 AGTCCCAAAAAGCAACTTTTAGTC 58.097 37.500 5.79 0.00 41.98 2.59
544 552 5.932619 AGTCCCAAAAAGCAACTTTTAGT 57.067 34.783 5.79 0.00 41.98 2.24
545 553 8.764287 CATTTAGTCCCAAAAAGCAACTTTTAG 58.236 33.333 5.79 1.81 41.98 1.85
546 554 8.478877 TCATTTAGTCCCAAAAAGCAACTTTTA 58.521 29.630 5.79 0.00 41.98 1.52
547 555 7.334858 TCATTTAGTCCCAAAAAGCAACTTTT 58.665 30.769 0.00 0.00 44.27 2.27
548 556 6.883744 TCATTTAGTCCCAAAAAGCAACTTT 58.116 32.000 0.00 0.00 34.94 2.66
549 557 6.478512 TCATTTAGTCCCAAAAAGCAACTT 57.521 33.333 0.00 0.00 0.00 2.66
550 558 6.323739 TCTTCATTTAGTCCCAAAAAGCAACT 59.676 34.615 0.00 0.00 0.00 3.16
551 559 6.512297 TCTTCATTTAGTCCCAAAAAGCAAC 58.488 36.000 0.00 0.00 0.00 4.17
552 560 6.723298 TCTTCATTTAGTCCCAAAAAGCAA 57.277 33.333 0.00 0.00 0.00 3.91
553 561 6.549364 TCTTCTTCATTTAGTCCCAAAAAGCA 59.451 34.615 0.00 0.00 0.00 3.91
554 562 6.863645 GTCTTCTTCATTTAGTCCCAAAAAGC 59.136 38.462 0.00 0.00 0.00 3.51
555 563 8.171164 AGTCTTCTTCATTTAGTCCCAAAAAG 57.829 34.615 0.00 0.00 0.00 2.27
556 564 9.807921 ATAGTCTTCTTCATTTAGTCCCAAAAA 57.192 29.630 0.00 0.00 0.00 1.94
557 565 9.449719 GATAGTCTTCTTCATTTAGTCCCAAAA 57.550 33.333 0.00 0.00 0.00 2.44
558 566 8.602424 TGATAGTCTTCTTCATTTAGTCCCAAA 58.398 33.333 0.00 0.00 0.00 3.28
559 567 8.146053 TGATAGTCTTCTTCATTTAGTCCCAA 57.854 34.615 0.00 0.00 0.00 4.12
560 568 7.733773 TGATAGTCTTCTTCATTTAGTCCCA 57.266 36.000 0.00 0.00 0.00 4.37
561 569 7.713073 CCTTGATAGTCTTCTTCATTTAGTCCC 59.287 40.741 0.00 0.00 0.00 4.46
562 570 8.478877 TCCTTGATAGTCTTCTTCATTTAGTCC 58.521 37.037 0.00 0.00 0.00 3.85
563 571 9.877178 TTCCTTGATAGTCTTCTTCATTTAGTC 57.123 33.333 0.00 0.00 0.00 2.59
567 575 9.225436 GACTTTCCTTGATAGTCTTCTTCATTT 57.775 33.333 7.24 0.00 37.55 2.32
568 576 7.826744 GGACTTTCCTTGATAGTCTTCTTCATT 59.173 37.037 12.34 0.00 39.42 2.57
569 577 7.181845 AGGACTTTCCTTGATAGTCTTCTTCAT 59.818 37.037 12.34 0.00 46.91 2.57
570 578 6.498651 AGGACTTTCCTTGATAGTCTTCTTCA 59.501 38.462 12.34 0.00 46.91 3.02
571 579 6.941857 AGGACTTTCCTTGATAGTCTTCTTC 58.058 40.000 12.34 0.00 46.91 2.87
572 580 6.943899 AGGACTTTCCTTGATAGTCTTCTT 57.056 37.500 12.34 0.00 46.91 2.52
592 600 3.452990 GTCCCAAAAAGTCCCAAAAAGGA 59.547 43.478 0.00 0.00 41.22 3.36
593 601 3.454447 AGTCCCAAAAAGTCCCAAAAAGG 59.546 43.478 0.00 0.00 37.03 3.11
594 602 4.753516 AGTCCCAAAAAGTCCCAAAAAG 57.246 40.909 0.00 0.00 0.00 2.27
595 603 5.506730 AAAGTCCCAAAAAGTCCCAAAAA 57.493 34.783 0.00 0.00 0.00 1.94
596 604 5.492895 GAAAAGTCCCAAAAAGTCCCAAAA 58.507 37.500 0.00 0.00 0.00 2.44
597 605 4.080807 GGAAAAGTCCCAAAAAGTCCCAAA 60.081 41.667 0.00 0.00 38.08 3.28
598 606 3.452990 GGAAAAGTCCCAAAAAGTCCCAA 59.547 43.478 0.00 0.00 38.08 4.12
599 607 3.035363 GGAAAAGTCCCAAAAAGTCCCA 58.965 45.455 0.00 0.00 38.08 4.37
600 608 3.035363 TGGAAAAGTCCCAAAAAGTCCC 58.965 45.455 0.00 0.00 44.23 4.46
601 609 4.081365 TGTTGGAAAAGTCCCAAAAAGTCC 60.081 41.667 0.00 0.00 44.41 3.85
602 610 5.079689 TGTTGGAAAAGTCCCAAAAAGTC 57.920 39.130 0.00 0.00 44.41 3.01
603 611 5.491323 TTGTTGGAAAAGTCCCAAAAAGT 57.509 34.783 0.00 0.00 44.41 2.66
604 612 5.220835 GCATTGTTGGAAAAGTCCCAAAAAG 60.221 40.000 0.00 0.00 42.35 2.27
605 613 4.637977 GCATTGTTGGAAAAGTCCCAAAAA 59.362 37.500 0.00 0.00 44.41 1.94
606 614 4.195416 GCATTGTTGGAAAAGTCCCAAAA 58.805 39.130 0.00 0.00 44.41 2.44
607 615 3.432890 GGCATTGTTGGAAAAGTCCCAAA 60.433 43.478 0.00 0.00 44.41 3.28
608 616 2.103941 GGCATTGTTGGAAAAGTCCCAA 59.896 45.455 0.00 0.00 44.23 4.12
609 617 1.691434 GGCATTGTTGGAAAAGTCCCA 59.309 47.619 0.00 0.00 44.23 4.37
610 618 1.001974 GGGCATTGTTGGAAAAGTCCC 59.998 52.381 0.00 0.00 44.23 4.46
611 619 1.001974 GGGGCATTGTTGGAAAAGTCC 59.998 52.381 0.00 0.00 45.21 3.85
612 620 1.970640 AGGGGCATTGTTGGAAAAGTC 59.029 47.619 0.00 0.00 0.00 3.01
613 621 1.970640 GAGGGGCATTGTTGGAAAAGT 59.029 47.619 0.00 0.00 0.00 2.66
614 622 1.276138 GGAGGGGCATTGTTGGAAAAG 59.724 52.381 0.00 0.00 0.00 2.27
615 623 1.347062 GGAGGGGCATTGTTGGAAAA 58.653 50.000 0.00 0.00 0.00 2.29
616 624 0.544120 GGGAGGGGCATTGTTGGAAA 60.544 55.000 0.00 0.00 0.00 3.13
617 625 1.078347 GGGAGGGGCATTGTTGGAA 59.922 57.895 0.00 0.00 0.00 3.53
618 626 1.856873 AGGGAGGGGCATTGTTGGA 60.857 57.895 0.00 0.00 0.00 3.53
619 627 1.683365 CAGGGAGGGGCATTGTTGG 60.683 63.158 0.00 0.00 0.00 3.77
620 628 2.353610 GCAGGGAGGGGCATTGTTG 61.354 63.158 0.00 0.00 0.00 3.33
621 629 2.037847 GCAGGGAGGGGCATTGTT 59.962 61.111 0.00 0.00 0.00 2.83
622 630 3.267233 TGCAGGGAGGGGCATTGT 61.267 61.111 0.00 0.00 34.58 2.71
623 631 2.757099 GTGCAGGGAGGGGCATTG 60.757 66.667 0.00 0.00 42.75 2.82
624 632 4.066139 GGTGCAGGGAGGGGCATT 62.066 66.667 0.00 0.00 42.75 3.56
628 636 3.350163 AATGGGTGCAGGGAGGGG 61.350 66.667 0.00 0.00 0.00 4.79
629 637 2.043652 CAATGGGTGCAGGGAGGG 60.044 66.667 0.00 0.00 0.00 4.30
652 660 2.206536 AAACAACACCATGGGGCGG 61.207 57.895 15.93 9.17 37.90 6.13
653 661 1.006337 CAAACAACACCATGGGGCG 60.006 57.895 15.93 8.39 37.90 6.13
654 662 1.370810 CCAAACAACACCATGGGGC 59.629 57.895 15.93 0.00 37.90 5.80
655 663 1.127343 AACCAAACAACACCATGGGG 58.873 50.000 14.08 14.08 37.26 4.96
656 664 1.809651 GCAACCAAACAACACCATGGG 60.810 52.381 18.09 7.72 37.26 4.00
657 665 1.138661 AGCAACCAAACAACACCATGG 59.861 47.619 11.19 11.19 38.91 3.66
658 666 2.600470 AGCAACCAAACAACACCATG 57.400 45.000 0.00 0.00 0.00 3.66
659 667 4.953940 AATAGCAACCAAACAACACCAT 57.046 36.364 0.00 0.00 0.00 3.55
660 668 4.744795 AAATAGCAACCAAACAACACCA 57.255 36.364 0.00 0.00 0.00 4.17
681 689 7.931046 ACCATGTTACCCCTAGTATACAAAAA 58.069 34.615 5.50 0.00 30.80 1.94
682 690 7.403813 AGACCATGTTACCCCTAGTATACAAAA 59.596 37.037 5.50 0.00 30.80 2.44
683 691 6.904654 AGACCATGTTACCCCTAGTATACAAA 59.095 38.462 5.50 0.00 30.80 2.83
684 692 6.446451 AGACCATGTTACCCCTAGTATACAA 58.554 40.000 5.50 0.00 30.80 2.41
685 693 6.034442 AGACCATGTTACCCCTAGTATACA 57.966 41.667 5.50 0.00 0.00 2.29
686 694 6.990908 AAGACCATGTTACCCCTAGTATAC 57.009 41.667 0.00 0.00 0.00 1.47
687 695 8.927411 GTAAAAGACCATGTTACCCCTAGTATA 58.073 37.037 0.00 0.00 0.00 1.47
688 696 6.903340 AAAAGACCATGTTACCCCTAGTAT 57.097 37.500 0.00 0.00 0.00 2.12
689 697 6.730038 TGTAAAAGACCATGTTACCCCTAGTA 59.270 38.462 0.00 0.00 0.00 1.82
690 698 5.548836 TGTAAAAGACCATGTTACCCCTAGT 59.451 40.000 0.00 0.00 0.00 2.57
691 699 6.057321 TGTAAAAGACCATGTTACCCCTAG 57.943 41.667 0.00 0.00 0.00 3.02
692 700 6.419791 CATGTAAAAGACCATGTTACCCCTA 58.580 40.000 0.00 0.00 34.97 3.53
693 701 5.261216 CATGTAAAAGACCATGTTACCCCT 58.739 41.667 0.00 0.00 34.97 4.79
694 702 5.576447 CATGTAAAAGACCATGTTACCCC 57.424 43.478 0.00 0.00 34.97 4.95
701 709 6.484643 CCCTAGATGACATGTAAAAGACCATG 59.515 42.308 0.00 0.00 43.21 3.66
702 710 6.386927 TCCCTAGATGACATGTAAAAGACCAT 59.613 38.462 0.00 0.00 0.00 3.55
703 711 5.724370 TCCCTAGATGACATGTAAAAGACCA 59.276 40.000 0.00 0.00 0.00 4.02
704 712 6.235231 TCCCTAGATGACATGTAAAAGACC 57.765 41.667 0.00 0.00 0.00 3.85
705 713 6.284459 CCTCCCTAGATGACATGTAAAAGAC 58.716 44.000 0.00 0.00 0.00 3.01
706 714 5.366768 CCCTCCCTAGATGACATGTAAAAGA 59.633 44.000 0.00 0.00 0.00 2.52
707 715 5.366768 TCCCTCCCTAGATGACATGTAAAAG 59.633 44.000 0.00 0.00 0.00 2.27
708 716 5.130477 GTCCCTCCCTAGATGACATGTAAAA 59.870 44.000 0.00 0.00 0.00 1.52
709 717 4.654262 GTCCCTCCCTAGATGACATGTAAA 59.346 45.833 0.00 0.00 0.00 2.01
710 718 4.078571 AGTCCCTCCCTAGATGACATGTAA 60.079 45.833 0.00 0.00 30.82 2.41
711 719 3.467483 AGTCCCTCCCTAGATGACATGTA 59.533 47.826 0.00 0.00 30.82 2.29
712 720 2.248686 AGTCCCTCCCTAGATGACATGT 59.751 50.000 0.00 0.00 30.82 3.21
713 721 2.969628 AGTCCCTCCCTAGATGACATG 58.030 52.381 0.00 0.00 30.82 3.21
714 722 3.076785 CCTAGTCCCTCCCTAGATGACAT 59.923 52.174 0.00 0.00 35.01 3.06
715 723 2.447429 CCTAGTCCCTCCCTAGATGACA 59.553 54.545 0.00 0.00 35.01 3.58
716 724 2.225167 CCCTAGTCCCTCCCTAGATGAC 60.225 59.091 0.00 0.00 35.01 3.06
717 725 2.074579 CCCTAGTCCCTCCCTAGATGA 58.925 57.143 0.00 0.00 35.01 2.92
718 726 2.074579 TCCCTAGTCCCTCCCTAGATG 58.925 57.143 0.00 0.00 35.01 2.90
719 727 2.075383 GTCCCTAGTCCCTCCCTAGAT 58.925 57.143 0.00 0.00 35.01 1.98
720 728 1.012302 AGTCCCTAGTCCCTCCCTAGA 59.988 57.143 0.00 0.00 35.01 2.43
721 729 1.536644 AGTCCCTAGTCCCTCCCTAG 58.463 60.000 0.00 0.00 33.23 3.02
722 730 2.012168 AAGTCCCTAGTCCCTCCCTA 57.988 55.000 0.00 0.00 0.00 3.53
723 731 1.102938 AAAGTCCCTAGTCCCTCCCT 58.897 55.000 0.00 0.00 0.00 4.20
724 732 1.968278 AAAAGTCCCTAGTCCCTCCC 58.032 55.000 0.00 0.00 0.00 4.30
725 733 4.102598 ACTAAAAAGTCCCTAGTCCCTCC 58.897 47.826 0.00 0.00 0.00 4.30
726 734 5.341872 GACTAAAAAGTCCCTAGTCCCTC 57.658 47.826 0.00 0.00 36.91 4.30
737 745 6.127563 TGTTTGTTTCCAGGGACTAAAAAGTC 60.128 38.462 0.00 0.00 36.02 3.01
738 746 5.717654 TGTTTGTTTCCAGGGACTAAAAAGT 59.282 36.000 0.00 0.00 36.02 2.66
739 747 6.215495 TGTTTGTTTCCAGGGACTAAAAAG 57.785 37.500 0.00 0.00 36.02 2.27
740 748 5.128008 CCTGTTTGTTTCCAGGGACTAAAAA 59.872 40.000 0.00 0.00 43.74 1.94
741 749 4.647399 CCTGTTTGTTTCCAGGGACTAAAA 59.353 41.667 0.00 0.00 43.74 1.52
742 750 4.211920 CCTGTTTGTTTCCAGGGACTAAA 58.788 43.478 0.00 0.00 43.74 1.85
743 751 3.827722 CCTGTTTGTTTCCAGGGACTAA 58.172 45.455 0.00 0.00 43.74 2.24
744 752 3.502123 CCTGTTTGTTTCCAGGGACTA 57.498 47.619 0.00 0.00 43.74 2.59
745 753 2.364972 CCTGTTTGTTTCCAGGGACT 57.635 50.000 0.00 0.00 43.74 3.85
749 757 1.620822 CCTCCCTGTTTGTTTCCAGG 58.379 55.000 0.00 0.00 46.43 4.45
750 758 1.144913 TCCCTCCCTGTTTGTTTCCAG 59.855 52.381 0.00 0.00 0.00 3.86
751 759 1.133606 GTCCCTCCCTGTTTGTTTCCA 60.134 52.381 0.00 0.00 0.00 3.53
752 760 1.145119 AGTCCCTCCCTGTTTGTTTCC 59.855 52.381 0.00 0.00 0.00 3.13
753 761 2.658807 AGTCCCTCCCTGTTTGTTTC 57.341 50.000 0.00 0.00 0.00 2.78
754 762 3.398318 AAAGTCCCTCCCTGTTTGTTT 57.602 42.857 0.00 0.00 0.00 2.83
755 763 3.398318 AAAAGTCCCTCCCTGTTTGTT 57.602 42.857 0.00 0.00 0.00 2.83
756 764 3.398318 AAAAAGTCCCTCCCTGTTTGT 57.602 42.857 0.00 0.00 0.00 2.83
757 765 5.538433 TCATTAAAAAGTCCCTCCCTGTTTG 59.462 40.000 0.00 0.00 0.00 2.93
758 766 5.538813 GTCATTAAAAAGTCCCTCCCTGTTT 59.461 40.000 0.00 0.00 0.00 2.83
759 767 5.077564 GTCATTAAAAAGTCCCTCCCTGTT 58.922 41.667 0.00 0.00 0.00 3.16
760 768 4.354087 AGTCATTAAAAAGTCCCTCCCTGT 59.646 41.667 0.00 0.00 0.00 4.00
761 769 4.923415 AGTCATTAAAAAGTCCCTCCCTG 58.077 43.478 0.00 0.00 0.00 4.45
762 770 6.030082 TCTAGTCATTAAAAAGTCCCTCCCT 58.970 40.000 0.00 0.00 0.00 4.20
763 771 6.309389 TCTAGTCATTAAAAAGTCCCTCCC 57.691 41.667 0.00 0.00 0.00 4.30
764 772 8.809468 ATTTCTAGTCATTAAAAAGTCCCTCC 57.191 34.615 0.00 0.00 0.00 4.30
790 798 6.608002 TGCCTTTTTCTAGTCCCAACTAAAAA 59.392 34.615 0.00 0.00 37.53 1.94
791 799 6.130569 TGCCTTTTTCTAGTCCCAACTAAAA 58.869 36.000 0.00 0.00 37.53 1.52
792 800 5.697067 TGCCTTTTTCTAGTCCCAACTAAA 58.303 37.500 0.00 0.00 37.53 1.85
793 801 5.313280 TGCCTTTTTCTAGTCCCAACTAA 57.687 39.130 0.00 0.00 37.53 2.24
794 802 4.986054 TGCCTTTTTCTAGTCCCAACTA 57.014 40.909 0.00 0.00 36.92 2.24
795 803 3.876309 TGCCTTTTTCTAGTCCCAACT 57.124 42.857 0.00 0.00 39.66 3.16
796 804 4.640647 CCTATGCCTTTTTCTAGTCCCAAC 59.359 45.833 0.00 0.00 0.00 3.77
797 805 4.538490 TCCTATGCCTTTTTCTAGTCCCAA 59.462 41.667 0.00 0.00 0.00 4.12
798 806 4.080526 GTCCTATGCCTTTTTCTAGTCCCA 60.081 45.833 0.00 0.00 0.00 4.37
799 807 4.164413 AGTCCTATGCCTTTTTCTAGTCCC 59.836 45.833 0.00 0.00 0.00 4.46
800 808 5.360649 AGTCCTATGCCTTTTTCTAGTCC 57.639 43.478 0.00 0.00 0.00 3.85
801 809 8.204836 TCATAAGTCCTATGCCTTTTTCTAGTC 58.795 37.037 0.00 0.00 37.84 2.59
802 810 8.090788 TCATAAGTCCTATGCCTTTTTCTAGT 57.909 34.615 0.00 0.00 37.84 2.57
803 811 8.831550 GTTCATAAGTCCTATGCCTTTTTCTAG 58.168 37.037 0.00 0.00 37.84 2.43
804 812 7.773690 GGTTCATAAGTCCTATGCCTTTTTCTA 59.226 37.037 0.00 0.00 37.84 2.10
805 813 6.603599 GGTTCATAAGTCCTATGCCTTTTTCT 59.396 38.462 0.00 0.00 37.84 2.52
806 814 6.377146 TGGTTCATAAGTCCTATGCCTTTTTC 59.623 38.462 0.00 0.00 37.84 2.29
807 815 6.252995 TGGTTCATAAGTCCTATGCCTTTTT 58.747 36.000 0.00 0.00 37.84 1.94
808 816 5.826643 TGGTTCATAAGTCCTATGCCTTTT 58.173 37.500 0.00 0.00 37.84 2.27
809 817 5.450818 TGGTTCATAAGTCCTATGCCTTT 57.549 39.130 0.00 0.00 37.84 3.11
810 818 5.450818 TTGGTTCATAAGTCCTATGCCTT 57.549 39.130 0.00 0.00 37.84 4.35
811 819 5.193679 GTTTGGTTCATAAGTCCTATGCCT 58.806 41.667 0.00 0.00 37.84 4.75
812 820 4.947388 TGTTTGGTTCATAAGTCCTATGCC 59.053 41.667 0.00 0.00 37.84 4.40
813 821 5.066505 CCTGTTTGGTTCATAAGTCCTATGC 59.933 44.000 0.00 0.00 37.84 3.14
814 822 5.590259 CCCTGTTTGGTTCATAAGTCCTATG 59.410 44.000 0.00 0.00 39.11 2.23
815 823 5.755849 CCCTGTTTGGTTCATAAGTCCTAT 58.244 41.667 0.00 0.00 0.00 2.57
816 824 4.566907 GCCCTGTTTGGTTCATAAGTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
817 825 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
818 826 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
819 827 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
820 828 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
821 829 2.755103 GAGGCCCTGTTTGGTTCATAAG 59.245 50.000 0.00 0.00 0.00 1.73
822 830 2.109128 TGAGGCCCTGTTTGGTTCATAA 59.891 45.455 0.00 0.00 0.00 1.90
823 831 1.707989 TGAGGCCCTGTTTGGTTCATA 59.292 47.619 0.00 0.00 0.00 2.15
824 832 0.482446 TGAGGCCCTGTTTGGTTCAT 59.518 50.000 0.00 0.00 0.00 2.57
825 833 0.260230 TTGAGGCCCTGTTTGGTTCA 59.740 50.000 0.00 0.00 0.00 3.18
826 834 1.408969 TTTGAGGCCCTGTTTGGTTC 58.591 50.000 0.00 0.00 0.00 3.62
827 835 1.693606 CATTTGAGGCCCTGTTTGGTT 59.306 47.619 0.00 0.00 0.00 3.67
828 836 1.133199 TCATTTGAGGCCCTGTTTGGT 60.133 47.619 0.00 0.00 0.00 3.67
829 837 1.547372 CTCATTTGAGGCCCTGTTTGG 59.453 52.381 0.00 0.00 38.48 3.28
830 838 2.029649 CACTCATTTGAGGCCCTGTTTG 60.030 50.000 11.99 0.00 46.13 2.93
831 839 2.242043 CACTCATTTGAGGCCCTGTTT 58.758 47.619 11.99 0.00 46.13 2.83
832 840 1.915141 CACTCATTTGAGGCCCTGTT 58.085 50.000 11.99 0.00 46.13 3.16
833 841 0.610232 GCACTCATTTGAGGCCCTGT 60.610 55.000 11.99 0.00 46.13 4.00
834 842 0.609957 TGCACTCATTTGAGGCCCTG 60.610 55.000 11.99 2.65 46.13 4.45
835 843 0.112995 TTGCACTCATTTGAGGCCCT 59.887 50.000 11.99 0.00 46.13 5.19
836 844 0.529378 CTTGCACTCATTTGAGGCCC 59.471 55.000 11.99 0.00 46.13 5.80
837 845 0.108945 GCTTGCACTCATTTGAGGCC 60.109 55.000 11.99 0.00 46.13 5.19
838 846 0.599558 TGCTTGCACTCATTTGAGGC 59.400 50.000 11.99 11.82 46.13 4.70
839 847 2.034939 TGTTGCTTGCACTCATTTGAGG 59.965 45.455 11.99 2.80 46.13 3.86
841 849 3.119209 TGTTGTTGCTTGCACTCATTTGA 60.119 39.130 0.00 0.00 0.00 2.69
842 850 3.188492 TGTTGTTGCTTGCACTCATTTG 58.812 40.909 0.00 0.00 0.00 2.32
843 851 3.523606 TGTTGTTGCTTGCACTCATTT 57.476 38.095 0.00 0.00 0.00 2.32
844 852 3.738830 ATGTTGTTGCTTGCACTCATT 57.261 38.095 0.00 0.00 0.00 2.57
845 853 3.738830 AATGTTGTTGCTTGCACTCAT 57.261 38.095 0.00 0.00 0.00 2.90
846 854 3.523606 AAATGTTGTTGCTTGCACTCA 57.476 38.095 0.00 0.00 0.00 3.41
969 991 3.163594 GAGTTCGATCCGTTGCATTTTG 58.836 45.455 0.00 0.00 0.00 2.44
1085 1353 4.452733 CGAGGAGGTTGACGGGGC 62.453 72.222 0.00 0.00 0.00 5.80
1310 1653 0.759436 GCTCCTCGTCCTTCCCCATA 60.759 60.000 0.00 0.00 0.00 2.74
1312 1655 2.683933 GCTCCTCGTCCTTCCCCA 60.684 66.667 0.00 0.00 0.00 4.96
1343 1686 2.217038 GGCGATGGATAGGCTCCCA 61.217 63.158 10.45 10.45 44.23 4.37
1433 1776 4.094294 GCAGTAATTGAATAGTGGCGAACA 59.906 41.667 0.00 0.00 0.00 3.18
1455 1803 2.287915 CCATCCGTGCTACTGTAATTGC 59.712 50.000 0.00 0.00 0.00 3.56
1501 1850 4.853924 TCCCAAAATCTCTCAGCAAAAC 57.146 40.909 0.00 0.00 0.00 2.43
1546 1900 3.936772 TTCCCCGTCCCTGCATTGC 62.937 63.158 0.46 0.46 0.00 3.56
1724 2079 2.438434 CCACCATTGGGACCGAGC 60.438 66.667 7.78 0.00 39.57 5.03
1796 2152 7.014115 CCATTCTAGACGTACGACATACATAC 58.986 42.308 24.41 1.78 32.79 2.39
1804 2160 5.680229 CACATTACCATTCTAGACGTACGAC 59.320 44.000 24.41 16.77 0.00 4.34
1832 2188 2.108952 AGCCCAACAGAGGATTTCAACT 59.891 45.455 0.00 0.00 0.00 3.16
1833 2189 2.519013 AGCCCAACAGAGGATTTCAAC 58.481 47.619 0.00 0.00 0.00 3.18
1849 2205 6.779860 TCAGTTATCTCCCATTTTATAGCCC 58.220 40.000 0.00 0.00 0.00 5.19
1863 2221 7.426929 ACACATGAAACAGTTCAGTTATCTC 57.573 36.000 0.00 0.00 46.75 2.75
1914 2298 7.538678 GCAACAGTTTACATTGAATGGTAGAAG 59.461 37.037 10.27 0.00 33.60 2.85
2042 2478 1.814394 GTGTCCCAAATACCCGGAAAC 59.186 52.381 0.73 0.00 0.00 2.78
2063 2499 8.319881 GGTACTACAAGAATAGAGGGAAAAGTT 58.680 37.037 0.00 0.00 0.00 2.66
2236 2839 3.401182 TGGAAATGTTGATGCAAAAGCC 58.599 40.909 0.00 0.00 0.00 4.35
2465 3068 4.576463 AGTAGCTAAATGCAATACCAGTGC 59.424 41.667 0.00 0.00 45.94 4.40
2584 3475 9.887629 TTATTCGATAAACCTAAACCATACACA 57.112 29.630 0.00 0.00 0.00 3.72
2739 5339 0.524862 AAGCTGCCTGAAATGCTTCG 59.475 50.000 0.00 0.00 41.21 3.79
2853 5453 0.529337 CTCCAGTGCCAGATACTGCG 60.529 60.000 0.00 0.00 43.19 5.18
2856 5456 2.540383 TCAACTCCAGTGCCAGATACT 58.460 47.619 0.00 0.00 0.00 2.12
2955 5555 2.993220 CGACACTCCGTTCATCAATTGA 59.007 45.455 11.26 11.26 0.00 2.57
2962 5562 1.443872 GCGTCGACACTCCGTTCAT 60.444 57.895 17.16 0.00 0.00 2.57
2967 5567 1.492319 TTTTTGGCGTCGACACTCCG 61.492 55.000 17.16 1.71 28.76 4.63
3118 5723 2.958355 CACCACAGTTTGTCCTTTGGAT 59.042 45.455 0.66 0.00 36.10 3.41
3156 5761 2.975489 TCTGAGGCAGGAATTCTATCCC 59.025 50.000 5.23 1.58 40.59 3.85
3160 5765 5.698741 TCATTTCTGAGGCAGGAATTCTA 57.301 39.130 5.23 0.00 37.57 2.10
3185 5790 1.191489 TCCTCCTCATCCACGTTGCA 61.191 55.000 0.00 0.00 0.00 4.08
3188 5793 1.938585 TCTTCCTCCTCATCCACGTT 58.061 50.000 0.00 0.00 0.00 3.99
3229 5834 5.716094 TCGTCATCAATCTCGGAAAAACTA 58.284 37.500 0.00 0.00 0.00 2.24
3232 5837 5.175127 TCATCGTCATCAATCTCGGAAAAA 58.825 37.500 0.00 0.00 0.00 1.94
3265 5870 2.167487 AGCATCTTCTCCTTCGTCTTCC 59.833 50.000 0.00 0.00 0.00 3.46
3285 5893 3.152341 AGGCCAAAATGAGTCACTTCAG 58.848 45.455 5.01 0.00 0.00 3.02
3333 6185 7.792374 TCTTTAAAGCGCATTATGAAGAGAT 57.208 32.000 11.47 0.00 0.00 2.75
3340 6192 6.746822 TGACAACATCTTTAAAGCGCATTATG 59.253 34.615 11.47 7.25 0.00 1.90
3371 6223 3.589988 GGGTGGCTGTGATAGATATTCG 58.410 50.000 0.00 0.00 0.00 3.34
3390 6249 4.670896 AAAAGAATAATCAATGGCCGGG 57.329 40.909 2.18 0.00 0.00 5.73
3394 6253 8.131100 TCTCATCGAAAAAGAATAATCAATGGC 58.869 33.333 0.00 0.00 0.00 4.40
3395 6254 9.661187 CTCTCATCGAAAAAGAATAATCAATGG 57.339 33.333 0.00 0.00 0.00 3.16
3396 6255 9.661187 CCTCTCATCGAAAAAGAATAATCAATG 57.339 33.333 0.00 0.00 0.00 2.82
3397 6256 8.844244 CCCTCTCATCGAAAAAGAATAATCAAT 58.156 33.333 0.00 0.00 0.00 2.57
3398 6257 7.283127 CCCCTCTCATCGAAAAAGAATAATCAA 59.717 37.037 0.00 0.00 0.00 2.57
3399 6258 6.767902 CCCCTCTCATCGAAAAAGAATAATCA 59.232 38.462 0.00 0.00 0.00 2.57
3400 6259 6.293680 GCCCCTCTCATCGAAAAAGAATAATC 60.294 42.308 0.00 0.00 0.00 1.75
3401 6260 5.532779 GCCCCTCTCATCGAAAAAGAATAAT 59.467 40.000 0.00 0.00 0.00 1.28
3402 6261 4.881850 GCCCCTCTCATCGAAAAAGAATAA 59.118 41.667 0.00 0.00 0.00 1.40
4473 8425 0.949105 CGCGAAGGTGTTTAGCCAGT 60.949 55.000 0.00 0.00 34.32 4.00
4552 8504 5.181433 GGAGGATGTTTGGTTAAGAGACAAC 59.819 44.000 0.00 0.00 0.00 3.32
4764 8716 0.177604 TTTGTGCAAGTGGCTTTGGG 59.822 50.000 0.00 0.00 45.15 4.12
5329 9282 7.148069 GGTGGCCTTTCTATATTACAATATGCC 60.148 40.741 3.32 9.92 35.32 4.40
5422 9375 3.791586 GGGAGAGGGTGCAGGAGC 61.792 72.222 0.00 0.00 42.57 4.70
5423 9376 3.465403 CGGGAGAGGGTGCAGGAG 61.465 72.222 0.00 0.00 0.00 3.69
5432 9385 0.764890 TAATCAATGCCCGGGAGAGG 59.235 55.000 29.31 10.82 0.00 3.69
5433 9386 2.430465 CATAATCAATGCCCGGGAGAG 58.570 52.381 29.31 10.80 0.00 3.20
5434 9387 2.566833 CATAATCAATGCCCGGGAGA 57.433 50.000 29.31 16.43 0.00 3.71
5491 9444 7.466804 TGTATATCCCTTGAGAAAAACCACTT 58.533 34.615 0.00 0.00 0.00 3.16
5531 9488 2.612212 GCCAAGTGTGAACCCGTATATG 59.388 50.000 0.00 0.00 0.00 1.78
5552 9509 8.005662 TCAAATTTGCAAAATGAATCTACACG 57.994 30.769 21.80 0.00 0.00 4.49
5559 9516 7.747357 GCGAGATTTCAAATTTGCAAAATGAAT 59.253 29.630 29.16 22.40 31.95 2.57
5574 9531 0.391130 CACCCTCGGCGAGATTTCAA 60.391 55.000 36.47 0.00 0.00 2.69
5584 9541 2.755650 CACTATAACATCACCCTCGGC 58.244 52.381 0.00 0.00 0.00 5.54
5585 9542 2.548067 GGCACTATAACATCACCCTCGG 60.548 54.545 0.00 0.00 0.00 4.63
5595 9552 1.828595 TCTCAAGCCGGCACTATAACA 59.171 47.619 31.54 0.63 0.00 2.41
5638 9626 8.329203 AGTTACAGAATCTTCTTTCCATTCAC 57.671 34.615 0.00 0.00 34.74 3.18
5660 9648 2.496899 AACGGCATCAGAATGGAGTT 57.503 45.000 0.00 0.00 36.16 3.01
5677 9665 3.815401 TCAAAGAGCCAAGACAGCTTAAC 59.185 43.478 0.00 0.00 41.75 2.01
5691 9679 1.815003 CCCATCAACCTGTCAAAGAGC 59.185 52.381 0.00 0.00 0.00 4.09
5711 9699 1.066587 CGCCCTCTTCTGTCCGATC 59.933 63.158 0.00 0.00 0.00 3.69
5716 9704 2.125350 CCAGCGCCCTCTTCTGTC 60.125 66.667 2.29 0.00 0.00 3.51
5732 9720 0.470341 GACAGGGTCCTCCATAAGCC 59.530 60.000 0.00 0.00 38.24 4.35
5737 9725 1.476165 ACCTGACAGGGTCCTCCAT 59.524 57.895 25.34 0.00 40.58 3.41
5804 9808 1.897137 TCAGACGGTCAGCGACACT 60.897 57.895 11.27 0.00 33.68 3.55
5805 9809 1.729838 GTCAGACGGTCAGCGACAC 60.730 63.158 11.27 0.00 33.68 3.67
5806 9810 2.643272 GTCAGACGGTCAGCGACA 59.357 61.111 11.27 0.00 33.68 4.35
5818 9822 2.093075 ACAGGCTACTACTAGCGTCAGA 60.093 50.000 0.00 0.00 45.82 3.27
5829 9833 5.642063 GTGCAAGTTGATTTACAGGCTACTA 59.358 40.000 7.16 0.00 0.00 1.82
5897 9901 2.723010 CGAAAACACTTCAGCTCATCGC 60.723 50.000 0.00 0.00 39.57 4.58
5910 9914 3.826466 ACCTAGTACTACGCGAAAACAC 58.174 45.455 15.93 3.64 0.00 3.32
5982 10113 8.425429 TGATAATTATCGACAGTGATGGCACAG 61.425 40.741 18.35 0.00 40.24 3.66
5983 10114 6.685116 TGATAATTATCGACAGTGATGGCACA 60.685 38.462 18.35 0.00 40.24 4.57
5984 10115 5.696270 TGATAATTATCGACAGTGATGGCAC 59.304 40.000 18.35 0.00 39.15 5.01
6002 10133 8.485392 CAAACAAAATCCCCTACCAATGATAAT 58.515 33.333 0.00 0.00 0.00 1.28
6003 10134 7.580495 GCAAACAAAATCCCCTACCAATGATAA 60.580 37.037 0.00 0.00 0.00 1.75
6004 10135 6.127196 GCAAACAAAATCCCCTACCAATGATA 60.127 38.462 0.00 0.00 0.00 2.15
6005 10136 5.338300 GCAAACAAAATCCCCTACCAATGAT 60.338 40.000 0.00 0.00 0.00 2.45
6007 10138 4.252878 GCAAACAAAATCCCCTACCAATG 58.747 43.478 0.00 0.00 0.00 2.82
6008 10139 3.906846 TGCAAACAAAATCCCCTACCAAT 59.093 39.130 0.00 0.00 0.00 3.16
6018 10150 2.472488 CACGGAGCTTGCAAACAAAATC 59.528 45.455 0.00 0.00 34.74 2.17
6031 10163 2.583441 TTACAGGCTGCACGGAGCT 61.583 57.895 15.89 0.00 45.94 4.09
6075 10211 3.418068 GTGCACAGCTGAGGCGAC 61.418 66.667 23.35 17.95 44.37 5.19
6123 10260 1.221466 CGCGTGCCTTCTTTCTCACA 61.221 55.000 0.00 0.00 0.00 3.58
6125 10262 2.317609 GCGCGTGCCTTCTTTCTCA 61.318 57.895 10.56 0.00 33.98 3.27
6150 10287 6.441274 TCAAGCTCAAAAATAGCAGTTTCAG 58.559 36.000 0.00 0.00 42.62 3.02
6167 10304 3.137533 GGCAGGTATTCAGATCAAGCTC 58.862 50.000 0.00 0.00 0.00 4.09
6168 10305 2.158696 GGGCAGGTATTCAGATCAAGCT 60.159 50.000 0.00 0.00 0.00 3.74
6182 10319 1.071471 CTTTCTCACACGGGCAGGT 59.929 57.895 0.00 0.00 0.00 4.00
6197 10334 2.017049 GTCCACACACAGCTGTTCTTT 58.983 47.619 18.94 0.00 0.00 2.52
6233 10370 1.032014 AGTTTGACTTTGGCATGCGT 58.968 45.000 12.44 3.26 0.00 5.24
6299 13458 1.540607 CGATAAATGCGCTCGCGACT 61.541 55.000 16.26 0.00 45.51 4.18
6301 13460 3.221008 CGATAAATGCGCTCGCGA 58.779 55.556 16.26 9.26 45.51 5.87
6328 13487 1.734047 CGTCTCCCGCTCTTCTTCTTG 60.734 57.143 0.00 0.00 0.00 3.02
6346 13505 0.531200 GGAACGTCCATCTTCTCCGT 59.469 55.000 0.00 0.00 36.28 4.69
6347 13506 0.530744 TGGAACGTCCATCTTCTCCG 59.469 55.000 3.02 0.00 42.67 4.63
6371 13530 1.202927 CCCGCCATTCCCATTACTGAT 60.203 52.381 0.00 0.00 0.00 2.90
6400 13560 0.043310 GTCATAACGAACGCGATGGC 60.043 55.000 15.93 1.76 41.64 4.40
6481 13654 2.498078 GGATGGTGTCCTATAGCTAGCC 59.502 54.545 12.13 0.00 44.16 3.93
6528 13703 1.463674 ATGAAACAGCGTGAATCCCC 58.536 50.000 0.00 0.00 0.00 4.81
6587 13963 8.918116 GGCATGTACATATCTATCTAGGATTCA 58.082 37.037 8.32 0.00 0.00 2.57
6604 13980 2.230992 GTGCATTTCAAGGGCATGTACA 59.769 45.455 0.00 0.00 40.05 2.90
6605 13981 2.417243 GGTGCATTTCAAGGGCATGTAC 60.417 50.000 0.00 0.00 40.05 2.90
6659 14037 2.896854 TGCGCCATCGAATGAGCC 60.897 61.111 4.18 0.00 38.10 4.70
6783 14170 2.442272 GGGAGGTGGCTAGCGAGA 60.442 66.667 9.00 0.00 0.00 4.04
6785 14172 2.442272 GAGGGAGGTGGCTAGCGA 60.442 66.667 9.00 0.68 0.00 4.93
6789 14176 1.076923 GACGAGAGGGAGGTGGCTA 60.077 63.158 0.00 0.00 0.00 3.93
6790 14177 2.363147 GACGAGAGGGAGGTGGCT 60.363 66.667 0.00 0.00 0.00 4.75
6791 14178 3.462678 GGACGAGAGGGAGGTGGC 61.463 72.222 0.00 0.00 0.00 5.01
6792 14179 3.141488 CGGACGAGAGGGAGGTGG 61.141 72.222 0.00 0.00 0.00 4.61
6793 14180 3.827898 GCGGACGAGAGGGAGGTG 61.828 72.222 0.00 0.00 0.00 4.00
6942 14336 2.822561 TGAGAGTGAGAGTGAAAGCGAT 59.177 45.455 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.