Multiple sequence alignment - TraesCS1D01G305700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G305700 chr1D 100.000 3100 0 0 1 3100 403061402 403058303 0.000000e+00 5725.0
1 TraesCS1D01G305700 chr1D 97.685 216 5 0 2560 2775 272614924 272615139 3.780000e-99 372.0
2 TraesCS1D01G305700 chr1D 97.248 218 6 0 2560 2777 459051289 459051506 1.360000e-98 370.0
3 TraesCS1D01G305700 chr1D 96.667 60 2 0 3041 3100 417198338 417198279 1.970000e-17 100.0
4 TraesCS1D01G305700 chr1B 92.000 1900 84 28 654 2511 541012706 541010833 0.000000e+00 2604.0
5 TraesCS1D01G305700 chr1B 91.288 264 14 3 397 651 541013144 541012881 4.920000e-93 351.0
6 TraesCS1D01G305700 chr1B 86.842 190 10 3 160 349 541016382 541016208 6.780000e-47 198.0
7 TraesCS1D01G305700 chr1B 91.000 100 5 2 1 99 541016481 541016385 6.980000e-27 132.0
8 TraesCS1D01G305700 chr1B 82.738 168 8 3 2793 2949 541010020 541009863 2.510000e-26 130.0
9 TraesCS1D01G305700 chr1A 92.004 1088 50 16 687 1754 498176002 498174932 0.000000e+00 1493.0
10 TraesCS1D01G305700 chr1A 86.326 724 55 17 1772 2468 498174815 498174109 0.000000e+00 749.0
11 TraesCS1D01G305700 chr1A 86.909 634 43 20 51 651 498176833 498176207 0.000000e+00 675.0
12 TraesCS1D01G305700 chr1A 96.639 119 1 1 2920 3038 498173542 498173427 8.770000e-46 195.0
13 TraesCS1D01G305700 chr1A 90.385 52 4 1 2773 2823 584643847 584643796 2.000000e-07 67.6
14 TraesCS1D01G305700 chr4D 98.148 216 4 0 2560 2775 111717997 111718212 8.110000e-101 377.0
15 TraesCS1D01G305700 chr4D 97.685 216 5 0 2560 2775 32130028 32130243 3.780000e-99 372.0
16 TraesCS1D01G305700 chr4D 97.685 216 5 0 2560 2775 368597813 368598028 3.780000e-99 372.0
17 TraesCS1D01G305700 chr3D 98.148 216 4 0 2560 2775 506225000 506225215 8.110000e-101 377.0
18 TraesCS1D01G305700 chr6D 97.685 216 5 0 2560 2775 279745703 279745918 3.780000e-99 372.0
19 TraesCS1D01G305700 chr6D 95.161 62 3 0 3039 3100 448351515 448351576 7.070000e-17 99.0
20 TraesCS1D01G305700 chr6D 100.000 31 0 0 2793 2823 456085880 456085850 1.200000e-04 58.4
21 TraesCS1D01G305700 chr7D 96.413 223 7 1 2560 2782 59727424 59727203 1.760000e-97 366.0
22 TraesCS1D01G305700 chr7A 91.353 266 13 8 2562 2821 95222305 95222044 3.800000e-94 355.0
23 TraesCS1D01G305700 chr7A 100.000 56 0 0 3045 3100 607604573 607604628 1.520000e-18 104.0
24 TraesCS1D01G305700 chr7A 93.651 63 4 0 3038 3100 36187495 36187433 9.150000e-16 95.3
25 TraesCS1D01G305700 chr7A 93.182 44 2 1 2781 2823 252189304 252189261 2.580000e-06 63.9
26 TraesCS1D01G305700 chr5D 98.246 57 1 0 3044 3100 396942711 396942767 1.970000e-17 100.0
27 TraesCS1D01G305700 chr5A 96.667 60 2 0 3041 3100 597771119 597771060 1.970000e-17 100.0
28 TraesCS1D01G305700 chr3A 96.667 60 2 0 3041 3100 514535596 514535537 1.970000e-17 100.0
29 TraesCS1D01G305700 chr3A 92.424 66 4 1 3035 3100 194480139 194480075 3.290000e-15 93.5
30 TraesCS1D01G305700 chr2A 98.246 57 1 0 3044 3100 32486037 32485981 1.970000e-17 100.0
31 TraesCS1D01G305700 chr6B 95.000 40 1 1 2785 2823 359808129 359808168 9.280000e-06 62.1
32 TraesCS1D01G305700 chr6B 86.538 52 5 2 2773 2823 667355385 667355435 4.320000e-04 56.5
33 TraesCS1D01G305700 chr2D 97.059 34 1 0 2790 2823 576343087 576343120 1.200000e-04 58.4
34 TraesCS1D01G305700 chr6A 100.000 29 0 0 2795 2823 602804373 602804345 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G305700 chr1D 403058303 403061402 3099 True 5725 5725 100.0000 1 3100 1 chr1D.!!$R1 3099
1 TraesCS1D01G305700 chr1B 541009863 541016481 6618 True 683 2604 88.7736 1 2949 5 chr1B.!!$R1 2948
2 TraesCS1D01G305700 chr1A 498173427 498176833 3406 True 778 1493 90.4695 51 3038 4 chr1A.!!$R2 2987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 3506 0.247736 GCAAGAAGAAGAGCGGGAGA 59.752 55.0 0.0 0.0 0.0 3.71 F
651 3704 0.599204 ACAACACGTACTGGAAGGCG 60.599 55.0 0.0 0.0 39.3 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1487 4765 0.172352 CCACCTCAAGAGAGACTCGC 59.828 60.0 0.0 0.0 44.98 5.03 R
2565 6442 0.034337 AGTTAGCCTCGGAAAACGCA 59.966 50.0 0.0 0.0 43.86 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.618084 TCAATCCCATTCCCATCCCA 58.382 50.000 0.00 0.00 0.00 4.37
20 21 1.500303 TCAATCCCATTCCCATCCCAG 59.500 52.381 0.00 0.00 0.00 4.45
43 44 0.581529 TGAGCTGAAGTGTTTTCGCG 59.418 50.000 0.00 0.00 35.20 5.87
44 45 0.582005 GAGCTGAAGTGTTTTCGCGT 59.418 50.000 5.77 0.00 35.20 6.01
45 46 1.790623 GAGCTGAAGTGTTTTCGCGTA 59.209 47.619 5.77 0.00 35.20 4.42
100 102 2.200067 CAAACAAAACAATCAGCCGCA 58.800 42.857 0.00 0.00 0.00 5.69
101 103 2.138596 AACAAAACAATCAGCCGCAG 57.861 45.000 0.00 0.00 0.00 5.18
102 104 0.318955 ACAAAACAATCAGCCGCAGC 60.319 50.000 0.00 0.00 40.32 5.25
103 105 1.010419 CAAAACAATCAGCCGCAGCC 61.010 55.000 0.00 0.00 41.25 4.85
104 106 2.476534 AAAACAATCAGCCGCAGCCG 62.477 55.000 0.00 0.00 41.25 5.52
125 127 2.892374 CTGTGCCATCACTGTCGATAA 58.108 47.619 0.00 0.00 43.49 1.75
126 128 3.461061 CTGTGCCATCACTGTCGATAAT 58.539 45.455 0.00 0.00 43.49 1.28
127 129 3.872696 TGTGCCATCACTGTCGATAATT 58.127 40.909 0.00 0.00 43.49 1.40
128 130 5.017294 TGTGCCATCACTGTCGATAATTA 57.983 39.130 0.00 0.00 43.49 1.40
130 132 5.696270 TGTGCCATCACTGTCGATAATTATC 59.304 40.000 14.45 14.45 43.49 1.75
131 133 5.696270 GTGCCATCACTGTCGATAATTATCA 59.304 40.000 22.22 9.20 40.03 2.15
141 144 6.707290 TGTCGATAATTATCATTGGTAGGGG 58.293 40.000 22.22 5.16 32.98 4.79
150 153 8.622572 ATTATCATTGGTAGGGGATTTTGTTT 57.377 30.769 0.00 0.00 0.00 2.83
154 157 3.309296 TGGTAGGGGATTTTGTTTGCAA 58.691 40.909 0.00 0.00 0.00 4.08
198 205 3.136750 CTCTCCCCTGATCTGCCG 58.863 66.667 0.00 0.00 0.00 5.69
246 254 0.744414 CGTGACGCCATTGATTCCCT 60.744 55.000 0.00 0.00 0.00 4.20
248 256 0.327924 TGACGCCATTGATTCCCTGT 59.672 50.000 0.00 0.00 0.00 4.00
290 299 6.317789 TCCACTCTGAAACTGCTATTTTTG 57.682 37.500 0.00 0.00 0.00 2.44
291 300 6.061441 TCCACTCTGAAACTGCTATTTTTGA 58.939 36.000 0.00 0.00 0.00 2.69
305 314 8.510243 TGCTATTTTTGAGCTTGATCTGAATA 57.490 30.769 0.00 0.00 40.76 1.75
317 326 0.249120 TCTGAATACCTGCCCGTGTG 59.751 55.000 0.00 0.00 0.00 3.82
318 327 0.249120 CTGAATACCTGCCCGTGTGA 59.751 55.000 0.00 0.00 0.00 3.58
319 328 0.249120 TGAATACCTGCCCGTGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
320 329 0.535335 GAATACCTGCCCGTGTGAGA 59.465 55.000 0.00 0.00 0.00 3.27
321 330 0.981183 AATACCTGCCCGTGTGAGAA 59.019 50.000 0.00 0.00 0.00 2.87
322 331 0.981183 ATACCTGCCCGTGTGAGAAA 59.019 50.000 0.00 0.00 0.00 2.52
356 371 2.360225 ACTGCCATGCACGCATCA 60.360 55.556 10.51 0.00 35.25 3.07
451 3488 0.317020 GCATTTATCGCCGGACAAGC 60.317 55.000 5.05 0.00 0.00 4.01
469 3506 0.247736 GCAAGAAGAAGAGCGGGAGA 59.752 55.000 0.00 0.00 0.00 3.71
470 3507 2.003196 CAAGAAGAAGAGCGGGAGAC 57.997 55.000 0.00 0.00 0.00 3.36
523 3561 1.486726 GGGAATGGCGGGATAGATAGG 59.513 57.143 0.00 0.00 0.00 2.57
604 3655 3.550842 GCTAACAACAAACAGCCTCCAAG 60.551 47.826 0.00 0.00 0.00 3.61
651 3704 0.599204 ACAACACGTACTGGAAGGCG 60.599 55.000 0.00 0.00 39.30 5.52
652 3705 1.005394 AACACGTACTGGAAGGCGG 60.005 57.895 0.00 0.00 39.96 6.13
701 3955 3.980646 TTCTCACCAAATTTCACGTGG 57.019 42.857 17.00 0.00 38.46 4.94
710 3964 4.261994 CCAAATTTCACGTGGAATTCCTGT 60.262 41.667 30.14 19.31 34.91 4.00
782 4038 4.824166 CCGGTCGCCACGTACTCG 62.824 72.222 0.00 0.00 43.34 4.18
874 4134 4.044484 CGCCTCCGATCCTAGCCG 62.044 72.222 0.00 0.00 36.29 5.52
908 4173 4.749310 CAAGCCGCACCGCTCTCT 62.749 66.667 0.00 0.00 38.44 3.10
913 4178 3.877357 CGCACCGCTCTCTCGCTA 61.877 66.667 0.00 0.00 0.00 4.26
914 4179 2.025441 GCACCGCTCTCTCGCTAG 59.975 66.667 0.00 0.00 0.00 3.42
915 4180 2.025441 CACCGCTCTCTCGCTAGC 59.975 66.667 4.06 4.06 35.33 3.42
916 4181 3.213402 ACCGCTCTCTCGCTAGCC 61.213 66.667 9.66 0.00 35.22 3.93
917 4182 3.212682 CCGCTCTCTCGCTAGCCA 61.213 66.667 9.66 0.00 35.22 4.75
1091 4363 1.539157 TCACTCTCACTCTCATGCGT 58.461 50.000 0.00 0.00 0.00 5.24
1439 4717 3.793559 CCTGCGCAGGTAGTAAACTAAT 58.206 45.455 42.09 0.00 43.61 1.73
1459 4737 3.132801 GAGCCCTTCTGCTGCAGC 61.133 66.667 31.89 31.89 42.95 5.25
1462 4740 2.991076 GCCCTTCTGCTGCAGCTTG 61.991 63.158 36.61 27.98 42.66 4.01
1487 4765 2.548904 GCTGGATTTGCTGCTCTATGAG 59.451 50.000 0.00 0.00 0.00 2.90
1550 4828 2.754552 TCTTGCAGCAATGGGATACAAC 59.245 45.455 8.67 0.00 39.74 3.32
1565 4843 4.675029 AACGTTCGTCTGGGCCCG 62.675 66.667 19.37 12.57 0.00 6.13
1628 4906 4.426313 GGCAGCCCACAGTACCCC 62.426 72.222 0.00 0.00 0.00 4.95
1670 4951 3.496155 GCAGTAGCAGAATTTCAGTTGC 58.504 45.455 0.00 0.31 41.58 4.17
1850 5240 6.072119 CCATATGTATGCTCGTAGGTACAGAA 60.072 42.308 1.24 0.00 31.35 3.02
1851 5241 4.895224 TGTATGCTCGTAGGTACAGAAG 57.105 45.455 0.00 0.00 0.00 2.85
1852 5242 4.267536 TGTATGCTCGTAGGTACAGAAGT 58.732 43.478 0.00 0.00 0.00 3.01
1853 5243 5.430886 TGTATGCTCGTAGGTACAGAAGTA 58.569 41.667 0.00 0.00 0.00 2.24
1932 5343 6.989169 CCGAGTACTGTAGTGGTATAGTAGTT 59.011 42.308 0.00 0.00 36.91 2.24
1933 5344 7.042187 CCGAGTACTGTAGTGGTATAGTAGTTG 60.042 44.444 0.00 0.00 36.91 3.16
1934 5345 7.493971 CGAGTACTGTAGTGGTATAGTAGTTGT 59.506 40.741 0.00 0.00 36.91 3.32
2218 5634 8.670490 AGTACTCCAGTATGATGATTCTAGGTA 58.330 37.037 0.00 0.00 39.69 3.08
2219 5635 8.952278 GTACTCCAGTATGATGATTCTAGGTAG 58.048 40.741 0.00 0.00 39.69 3.18
2220 5636 7.760607 ACTCCAGTATGATGATTCTAGGTAGA 58.239 38.462 0.00 0.00 39.69 2.59
2221 5637 8.397957 ACTCCAGTATGATGATTCTAGGTAGAT 58.602 37.037 0.00 0.00 39.69 1.98
2222 5638 9.913310 CTCCAGTATGATGATTCTAGGTAGATA 57.087 37.037 0.00 0.00 39.69 1.98
2311 5733 3.571571 TCACTGATAAACTCGTTCGTGG 58.428 45.455 0.00 0.00 0.00 4.94
2328 5750 1.218875 TGGCGTGAAGTGTAGCAACG 61.219 55.000 0.00 0.00 0.00 4.10
2333 5755 1.457303 GTGAAGTGTAGCAACGCTCAG 59.543 52.381 0.00 0.00 45.71 3.35
2356 5778 2.327343 ATTGTCGTGTGCGCATGCT 61.327 52.632 15.91 0.00 43.34 3.79
2435 5880 3.622060 CTCCCGTCCGGTTGCCATT 62.622 63.158 0.00 0.00 0.00 3.16
2511 6388 9.102757 GTATGAGTGTTCATATCACAAAGTCAT 57.897 33.333 1.06 0.00 45.44 3.06
2514 6391 8.314021 TGAGTGTTCATATCACAAAGTCATACT 58.686 33.333 0.00 0.00 38.16 2.12
2518 6395 9.936759 TGTTCATATCACAAAGTCATACTAACA 57.063 29.630 0.00 0.00 0.00 2.41
2565 6442 8.630278 CGTATATATCGCAAAGTTAGCCTAAT 57.370 34.615 0.00 0.00 0.00 1.73
2566 6443 8.532341 CGTATATATCGCAAAGTTAGCCTAATG 58.468 37.037 0.00 0.00 0.00 1.90
2567 6444 3.971032 ATCGCAAAGTTAGCCTAATGC 57.029 42.857 0.00 0.00 41.71 3.56
2568 6445 2.091152 CGCAAAGTTAGCCTAATGCG 57.909 50.000 14.32 14.32 46.36 4.73
2571 6448 3.669557 CGCAAAGTTAGCCTAATGCGTTT 60.670 43.478 18.16 1.98 46.37 3.60
2572 6449 5.138573 CGCAAAGTTAGCCTAATGCGTTTT 61.139 41.667 18.16 0.93 46.37 2.43
2573 6450 6.889249 CGCAAAGTTAGCCTAATGCGTTTTC 61.889 44.000 18.16 0.00 46.37 2.29
2577 6454 3.897819 GCCTAATGCGTTTTCCGAG 57.102 52.632 0.00 0.00 39.56 4.63
2579 6456 0.377203 CCTAATGCGTTTTCCGAGGC 59.623 55.000 0.00 0.00 39.56 4.70
2580 6457 1.369625 CTAATGCGTTTTCCGAGGCT 58.630 50.000 0.00 0.00 39.56 4.58
2581 6458 2.546778 CTAATGCGTTTTCCGAGGCTA 58.453 47.619 0.00 0.00 39.56 3.93
2582 6459 1.816074 AATGCGTTTTCCGAGGCTAA 58.184 45.000 0.00 0.00 39.56 3.09
2583 6460 1.084289 ATGCGTTTTCCGAGGCTAAC 58.916 50.000 0.00 0.00 39.56 2.34
2585 6462 1.154197 GCGTTTTCCGAGGCTAACTT 58.846 50.000 0.00 0.00 39.56 2.66
2586 6463 1.534163 GCGTTTTCCGAGGCTAACTTT 59.466 47.619 0.00 0.00 39.56 2.66
2587 6464 2.664698 GCGTTTTCCGAGGCTAACTTTG 60.665 50.000 0.00 0.00 39.56 2.77
2588 6465 2.803956 CGTTTTCCGAGGCTAACTTTGA 59.196 45.455 0.00 0.00 39.56 2.69
2590 6467 2.467566 TTCCGAGGCTAACTTTGACC 57.532 50.000 0.00 0.00 0.00 4.02
2591 6468 1.344065 TCCGAGGCTAACTTTGACCA 58.656 50.000 0.00 0.00 0.00 4.02
2593 6470 2.105134 TCCGAGGCTAACTTTGACCAAA 59.895 45.455 0.00 0.00 0.00 3.28
2594 6471 3.081804 CCGAGGCTAACTTTGACCAAAT 58.918 45.455 0.00 0.00 0.00 2.32
2595 6472 4.020039 TCCGAGGCTAACTTTGACCAAATA 60.020 41.667 0.00 0.00 0.00 1.40
2596 6473 4.881850 CCGAGGCTAACTTTGACCAAATAT 59.118 41.667 0.00 0.00 0.00 1.28
2598 6475 6.540914 CCGAGGCTAACTTTGACCAAATATTA 59.459 38.462 0.00 0.00 0.00 0.98
2599 6476 7.254795 CCGAGGCTAACTTTGACCAAATATTAG 60.255 40.741 15.32 15.32 34.88 1.73
2600 6477 7.494625 CGAGGCTAACTTTGACCAAATATTAGA 59.505 37.037 19.82 0.15 34.31 2.10
2601 6478 8.738645 AGGCTAACTTTGACCAAATATTAGAG 57.261 34.615 19.82 7.39 34.31 2.43
2602 6479 7.283354 AGGCTAACTTTGACCAAATATTAGAGC 59.717 37.037 19.82 13.12 34.31 4.09
2604 6481 8.458843 GCTAACTTTGACCAAATATTAGAGCAA 58.541 33.333 19.82 0.00 34.31 3.91
2623 6500 8.859236 AGAGCAATAATATATGACATGCAACT 57.141 30.769 10.78 7.52 34.89 3.16
2624 6501 9.293404 AGAGCAATAATATATGACATGCAACTT 57.707 29.630 10.78 0.00 34.89 2.66
2635 6512 3.705604 ACATGCAACTTACACAAAGCAC 58.294 40.909 0.00 0.00 38.93 4.40
2636 6513 3.130164 ACATGCAACTTACACAAAGCACA 59.870 39.130 0.00 0.00 38.93 4.57
2639 6516 2.715268 CAACTTACACAAAGCACACCG 58.285 47.619 0.00 0.00 38.93 4.94
2640 6517 2.032680 ACTTACACAAAGCACACCGT 57.967 45.000 0.00 0.00 38.93 4.83
2641 6518 2.361789 ACTTACACAAAGCACACCGTT 58.638 42.857 0.00 0.00 38.93 4.44
2642 6519 3.533547 ACTTACACAAAGCACACCGTTA 58.466 40.909 0.00 0.00 38.93 3.18
2643 6520 3.940221 ACTTACACAAAGCACACCGTTAA 59.060 39.130 0.00 0.00 38.93 2.01
2644 6521 4.395542 ACTTACACAAAGCACACCGTTAAA 59.604 37.500 0.00 0.00 38.93 1.52
2646 6523 4.379339 ACACAAAGCACACCGTTAAATT 57.621 36.364 0.00 0.00 0.00 1.82
2648 6525 3.420576 CACAAAGCACACCGTTAAATTCG 59.579 43.478 0.00 0.00 0.00 3.34
2649 6526 3.065648 ACAAAGCACACCGTTAAATTCGT 59.934 39.130 0.00 0.00 0.00 3.85
2650 6527 2.961522 AGCACACCGTTAAATTCGTG 57.038 45.000 0.00 0.00 0.00 4.35
2652 6529 2.032377 AGCACACCGTTAAATTCGTGTG 60.032 45.455 13.39 13.39 40.02 3.82
2653 6530 2.286536 GCACACCGTTAAATTCGTGTGT 60.287 45.455 17.54 12.66 40.37 3.72
2654 6531 3.284914 CACACCGTTAAATTCGTGTGTG 58.715 45.455 17.05 17.05 44.50 3.82
2655 6532 3.196463 ACACCGTTAAATTCGTGTGTGA 58.804 40.909 9.71 0.00 39.31 3.58
2656 6533 3.622163 ACACCGTTAAATTCGTGTGTGAA 59.378 39.130 9.71 0.00 39.31 3.18
2657 6534 4.094590 ACACCGTTAAATTCGTGTGTGAAA 59.905 37.500 9.71 0.00 39.31 2.69
2660 6537 4.024725 CCGTTAAATTCGTGTGTGAAAGGA 60.025 41.667 0.00 0.00 0.00 3.36
2662 6539 3.626028 AAATTCGTGTGTGAAAGGAGC 57.374 42.857 0.00 0.00 0.00 4.70
2663 6540 2.550830 ATTCGTGTGTGAAAGGAGCT 57.449 45.000 0.00 0.00 0.00 4.09
2664 6541 2.325583 TTCGTGTGTGAAAGGAGCTT 57.674 45.000 0.00 0.00 0.00 3.74
2665 6542 1.865865 TCGTGTGTGAAAGGAGCTTC 58.134 50.000 0.00 0.00 0.00 3.86
2666 6543 0.868406 CGTGTGTGAAAGGAGCTTCC 59.132 55.000 0.00 0.00 36.58 3.46
2667 6544 1.810031 CGTGTGTGAAAGGAGCTTCCA 60.810 52.381 5.21 0.00 39.61 3.53
2668 6545 2.297701 GTGTGTGAAAGGAGCTTCCAA 58.702 47.619 5.21 0.00 39.61 3.53
2669 6546 2.887152 GTGTGTGAAAGGAGCTTCCAAT 59.113 45.455 5.21 0.00 39.61 3.16
2671 6548 3.149196 GTGTGAAAGGAGCTTCCAATGA 58.851 45.455 5.21 0.00 39.61 2.57
2672 6549 3.760684 GTGTGAAAGGAGCTTCCAATGAT 59.239 43.478 5.21 0.00 39.61 2.45
2673 6550 4.943705 GTGTGAAAGGAGCTTCCAATGATA 59.056 41.667 5.21 0.00 39.61 2.15
2675 6552 6.767902 GTGTGAAAGGAGCTTCCAATGATATA 59.232 38.462 5.21 0.00 39.61 0.86
2676 6553 7.283127 GTGTGAAAGGAGCTTCCAATGATATAA 59.717 37.037 5.21 0.00 39.61 0.98
2677 6554 8.000709 TGTGAAAGGAGCTTCCAATGATATAAT 58.999 33.333 5.21 0.00 39.61 1.28
2678 6555 8.854117 GTGAAAGGAGCTTCCAATGATATAATT 58.146 33.333 5.21 0.00 39.61 1.40
2679 6556 9.425248 TGAAAGGAGCTTCCAATGATATAATTT 57.575 29.630 5.21 0.00 39.61 1.82
2682 6559 9.425248 AAGGAGCTTCCAATGATATAATTTTCA 57.575 29.630 5.21 0.00 39.61 2.69
2684 6561 8.632679 GGAGCTTCCAATGATATAATTTTCACA 58.367 33.333 0.00 0.00 36.28 3.58
2690 6567 9.531942 TCCAATGATATAATTTTCACATTGTGC 57.468 29.630 12.04 0.00 41.26 4.57
2691 6568 9.315525 CCAATGATATAATTTTCACATTGTGCA 57.684 29.630 12.04 0.00 41.26 4.57
2695 6572 9.518906 TGATATAATTTTCACATTGTGCATGTC 57.481 29.630 12.04 6.55 43.17 3.06
2696 6573 9.518906 GATATAATTTTCACATTGTGCATGTCA 57.481 29.630 12.04 0.00 43.17 3.58
2698 6575 6.474819 AATTTTCACATTGTGCATGTCATG 57.525 33.333 12.04 8.56 43.17 3.07
2699 6576 4.587584 TTTCACATTGTGCATGTCATGT 57.412 36.364 14.26 0.00 43.17 3.21
2700 6577 5.702349 TTTCACATTGTGCATGTCATGTA 57.298 34.783 14.26 7.11 43.17 2.29
2703 6580 5.486526 TCACATTGTGCATGTCATGTACTA 58.513 37.500 27.47 22.59 43.17 1.82
2706 6583 7.768120 TCACATTGTGCATGTCATGTACTATTA 59.232 33.333 27.47 14.37 43.17 0.98
2707 6584 8.397148 CACATTGTGCATGTCATGTACTATTAA 58.603 33.333 27.47 17.22 43.17 1.40
2709 6586 9.603298 CATTGTGCATGTCATGTACTATTAATC 57.397 33.333 27.47 6.34 44.74 1.75
2710 6587 8.962884 TTGTGCATGTCATGTACTATTAATCT 57.037 30.769 27.47 0.00 44.74 2.40
2711 6588 8.962884 TGTGCATGTCATGTACTATTAATCTT 57.037 30.769 27.47 0.00 44.74 2.40
2715 6592 9.045223 GCATGTCATGTACTATTAATCTTGTCA 57.955 33.333 14.26 0.00 0.00 3.58
2729 6606 5.551760 ATCTTGTCAATAGTCAAAAGCGG 57.448 39.130 0.00 0.00 0.00 5.52
2730 6607 4.385825 TCTTGTCAATAGTCAAAAGCGGT 58.614 39.130 0.00 0.00 0.00 5.68
2731 6608 4.451096 TCTTGTCAATAGTCAAAAGCGGTC 59.549 41.667 0.00 0.00 0.00 4.79
2732 6609 4.002906 TGTCAATAGTCAAAAGCGGTCT 57.997 40.909 0.00 0.00 0.00 3.85
2733 6610 4.385825 TGTCAATAGTCAAAAGCGGTCTT 58.614 39.130 0.00 0.00 0.00 3.01
2735 6612 4.451096 GTCAATAGTCAAAAGCGGTCTTGA 59.549 41.667 0.00 0.00 31.78 3.02
2736 6613 5.049680 GTCAATAGTCAAAAGCGGTCTTGAA 60.050 40.000 4.70 0.00 33.52 2.69
2737 6614 5.529430 TCAATAGTCAAAAGCGGTCTTGAAA 59.471 36.000 4.70 0.00 33.52 2.69
2738 6615 6.038825 TCAATAGTCAAAAGCGGTCTTGAAAA 59.961 34.615 4.70 0.00 33.52 2.29
2739 6616 4.712122 AGTCAAAAGCGGTCTTGAAAAA 57.288 36.364 4.70 0.00 33.52 1.94
2740 6617 4.421058 AGTCAAAAGCGGTCTTGAAAAAC 58.579 39.130 4.70 0.00 33.52 2.43
2741 6618 3.239712 GTCAAAAGCGGTCTTGAAAAACG 59.760 43.478 4.70 0.00 33.52 3.60
2748 6625 3.488489 CGGTCTTGAAAAACGCATTAGG 58.512 45.455 0.00 0.00 0.00 2.69
2749 6626 3.242518 GGTCTTGAAAAACGCATTAGGC 58.757 45.455 0.00 0.00 39.90 3.93
2753 6630 3.074675 TGAAAAACGCATTAGGCCCTA 57.925 42.857 0.00 0.00 40.31 3.53
2754 6631 3.626930 TGAAAAACGCATTAGGCCCTAT 58.373 40.909 0.00 0.00 40.31 2.57
2755 6632 4.783055 TGAAAAACGCATTAGGCCCTATA 58.217 39.130 0.00 0.00 40.31 1.31
2757 6634 6.535540 TGAAAAACGCATTAGGCCCTATATA 58.464 36.000 0.00 0.00 40.31 0.86
2759 6636 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
2760 6637 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
2761 6638 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
2763 6640 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
2764 6641 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
2765 6642 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
2767 6644 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
2768 6645 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
2771 6648 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
2783 7198 5.209659 TGGAAGGAGGGAGTAGTCTTTATC 58.790 45.833 0.00 0.00 0.00 1.75
2788 7203 6.137559 AGGAGGGAGTAGTCTTTATCGAAAT 58.862 40.000 0.00 0.00 0.00 2.17
2790 7205 7.951245 AGGAGGGAGTAGTCTTTATCGAAATAT 59.049 37.037 0.00 0.00 0.00 1.28
2791 7206 8.245491 GGAGGGAGTAGTCTTTATCGAAATATC 58.755 40.741 0.00 0.00 0.00 1.63
2792 7207 8.707796 AGGGAGTAGTCTTTATCGAAATATCA 57.292 34.615 0.00 0.00 0.00 2.15
2793 7208 9.144298 AGGGAGTAGTCTTTATCGAAATATCAA 57.856 33.333 0.00 0.00 0.00 2.57
2794 7209 9.760077 GGGAGTAGTCTTTATCGAAATATCAAA 57.240 33.333 0.00 0.00 0.00 2.69
2825 7240 1.195115 TCAGGAATGGAGGGAGTTCG 58.805 55.000 0.00 0.00 0.00 3.95
2826 7241 0.462759 CAGGAATGGAGGGAGTTCGC 60.463 60.000 0.00 0.00 0.00 4.70
2829 7244 1.078143 AATGGAGGGAGTTCGCAGC 60.078 57.895 0.00 0.00 0.00 5.25
2876 7302 2.841160 AAAGGCGGTTGGTTGCGAC 61.841 57.895 0.00 0.00 0.00 5.19
2877 7303 3.767630 AAGGCGGTTGGTTGCGACT 62.768 57.895 3.59 0.00 0.00 4.18
2878 7304 3.284449 GGCGGTTGGTTGCGACTT 61.284 61.111 3.59 0.00 0.00 3.01
2879 7305 2.051345 GCGGTTGGTTGCGACTTG 60.051 61.111 3.59 0.00 0.00 3.16
2880 7306 2.051345 CGGTTGGTTGCGACTTGC 60.051 61.111 3.59 0.00 46.70 4.01
2889 7315 3.093278 GCGACTTGCGAGGATTGG 58.907 61.111 5.79 0.00 44.57 3.16
2890 7316 1.447838 GCGACTTGCGAGGATTGGA 60.448 57.895 5.79 0.00 44.57 3.53
2912 7338 1.849219 GAGTGCTCGATACTTTCTGCG 59.151 52.381 4.25 0.00 0.00 5.18
2918 7344 1.131693 TCGATACTTTCTGCGAGCGAA 59.868 47.619 0.00 0.00 0.00 4.70
2965 7391 0.387202 AGCAATCCCTCTCGTGATCG 59.613 55.000 0.00 0.00 38.55 3.69
3025 7451 1.003233 GCAAACCGCCTCCTCTTCT 60.003 57.895 0.00 0.00 32.94 2.85
3026 7452 0.606673 GCAAACCGCCTCCTCTTCTT 60.607 55.000 0.00 0.00 32.94 2.52
3029 7455 0.610687 AACCGCCTCCTCTTCTTCAG 59.389 55.000 0.00 0.00 0.00 3.02
3035 7461 2.158784 GCCTCCTCTTCTTCAGCATCAT 60.159 50.000 0.00 0.00 0.00 2.45
3036 7462 3.731089 CCTCCTCTTCTTCAGCATCATC 58.269 50.000 0.00 0.00 0.00 2.92
3037 7463 3.134262 CCTCCTCTTCTTCAGCATCATCA 59.866 47.826 0.00 0.00 0.00 3.07
3038 7464 4.202377 CCTCCTCTTCTTCAGCATCATCAT 60.202 45.833 0.00 0.00 0.00 2.45
3039 7465 5.011840 CCTCCTCTTCTTCAGCATCATCATA 59.988 44.000 0.00 0.00 0.00 2.15
3040 7466 6.295973 CCTCCTCTTCTTCAGCATCATCATAT 60.296 42.308 0.00 0.00 0.00 1.78
3041 7467 6.699366 TCCTCTTCTTCAGCATCATCATATC 58.301 40.000 0.00 0.00 0.00 1.63
3042 7468 6.269307 TCCTCTTCTTCAGCATCATCATATCA 59.731 38.462 0.00 0.00 0.00 2.15
3043 7469 6.935208 CCTCTTCTTCAGCATCATCATATCAA 59.065 38.462 0.00 0.00 0.00 2.57
3044 7470 7.444487 CCTCTTCTTCAGCATCATCATATCAAA 59.556 37.037 0.00 0.00 0.00 2.69
3045 7471 8.151141 TCTTCTTCAGCATCATCATATCAAAC 57.849 34.615 0.00 0.00 0.00 2.93
3046 7472 7.991460 TCTTCTTCAGCATCATCATATCAAACT 59.009 33.333 0.00 0.00 0.00 2.66
3047 7473 9.269453 CTTCTTCAGCATCATCATATCAAACTA 57.731 33.333 0.00 0.00 0.00 2.24
3048 7474 8.828688 TCTTCAGCATCATCATATCAAACTAG 57.171 34.615 0.00 0.00 0.00 2.57
3049 7475 8.427276 TCTTCAGCATCATCATATCAAACTAGT 58.573 33.333 0.00 0.00 0.00 2.57
3050 7476 8.599055 TTCAGCATCATCATATCAAACTAGTC 57.401 34.615 0.00 0.00 0.00 2.59
3051 7477 7.729116 TCAGCATCATCATATCAAACTAGTCA 58.271 34.615 0.00 0.00 0.00 3.41
3052 7478 7.654923 TCAGCATCATCATATCAAACTAGTCAC 59.345 37.037 0.00 0.00 0.00 3.67
3053 7479 7.440255 CAGCATCATCATATCAAACTAGTCACA 59.560 37.037 0.00 0.00 0.00 3.58
3054 7480 7.989170 AGCATCATCATATCAAACTAGTCACAA 59.011 33.333 0.00 0.00 0.00 3.33
3055 7481 8.781196 GCATCATCATATCAAACTAGTCACAAT 58.219 33.333 0.00 0.00 0.00 2.71
3057 7483 8.667076 TCATCATATCAAACTAGTCACAATGG 57.333 34.615 0.00 0.00 0.00 3.16
3058 7484 7.716560 TCATCATATCAAACTAGTCACAATGGG 59.283 37.037 0.00 0.00 0.00 4.00
3059 7485 7.194112 TCATATCAAACTAGTCACAATGGGA 57.806 36.000 0.00 0.00 0.00 4.37
3060 7486 7.275183 TCATATCAAACTAGTCACAATGGGAG 58.725 38.462 0.00 0.00 0.00 4.30
3061 7487 4.974645 TCAAACTAGTCACAATGGGAGT 57.025 40.909 0.00 0.00 0.00 3.85
3062 7488 6.620877 ATCAAACTAGTCACAATGGGAGTA 57.379 37.500 0.00 0.00 0.00 2.59
3063 7489 6.428083 TCAAACTAGTCACAATGGGAGTAA 57.572 37.500 1.34 0.00 0.00 2.24
3064 7490 6.228258 TCAAACTAGTCACAATGGGAGTAAC 58.772 40.000 1.34 0.00 0.00 2.50
3065 7491 6.042781 TCAAACTAGTCACAATGGGAGTAACT 59.957 38.462 1.34 0.00 0.00 2.24
3066 7492 6.435292 AACTAGTCACAATGGGAGTAACTT 57.565 37.500 1.34 0.00 0.00 2.66
3067 7493 7.549147 AACTAGTCACAATGGGAGTAACTTA 57.451 36.000 1.34 0.00 0.00 2.24
3068 7494 7.549147 ACTAGTCACAATGGGAGTAACTTAA 57.451 36.000 1.34 0.00 0.00 1.85
3069 7495 7.384477 ACTAGTCACAATGGGAGTAACTTAAC 58.616 38.462 1.34 0.00 0.00 2.01
3070 7496 6.435292 AGTCACAATGGGAGTAACTTAACT 57.565 37.500 0.00 0.00 0.00 2.24
3071 7497 7.549147 AGTCACAATGGGAGTAACTTAACTA 57.451 36.000 0.00 0.00 0.00 2.24
3072 7498 7.612677 AGTCACAATGGGAGTAACTTAACTAG 58.387 38.462 0.00 0.00 0.00 2.57
3073 7499 7.234988 AGTCACAATGGGAGTAACTTAACTAGT 59.765 37.037 0.00 0.00 39.32 2.57
3074 7500 8.526147 GTCACAATGGGAGTAACTTAACTAGTA 58.474 37.037 0.00 0.00 35.54 1.82
3075 7501 9.092338 TCACAATGGGAGTAACTTAACTAGTAA 57.908 33.333 0.00 0.00 35.54 2.24
3076 7502 9.148104 CACAATGGGAGTAACTTAACTAGTAAC 57.852 37.037 0.00 0.00 35.54 2.50
3077 7503 8.873144 ACAATGGGAGTAACTTAACTAGTAACA 58.127 33.333 0.00 0.00 35.54 2.41
3078 7504 9.886132 CAATGGGAGTAACTTAACTAGTAACAT 57.114 33.333 0.00 0.00 35.54 2.71
3080 7506 8.654485 TGGGAGTAACTTAACTAGTAACATCA 57.346 34.615 0.00 0.00 35.54 3.07
3081 7507 8.526147 TGGGAGTAACTTAACTAGTAACATCAC 58.474 37.037 0.00 0.00 35.54 3.06
3082 7508 8.526147 GGGAGTAACTTAACTAGTAACATCACA 58.474 37.037 0.00 0.00 35.54 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.723010 CGAAAACACTTCAGCTCATCGC 60.723 50.000 0.00 0.00 39.57 4.58
27 28 1.525619 ACTACGCGAAAACACTTCAGC 59.474 47.619 15.93 0.00 0.00 4.26
28 29 3.979495 AGTACTACGCGAAAACACTTCAG 59.021 43.478 15.93 0.00 0.00 3.02
33 34 3.826466 ACCTAGTACTACGCGAAAACAC 58.174 45.455 15.93 3.64 0.00 3.32
43 44 8.569641 CAGGAGACAATTCATACCTAGTACTAC 58.430 40.741 0.00 0.00 0.00 2.73
44 45 8.500238 TCAGGAGACAATTCATACCTAGTACTA 58.500 37.037 1.89 1.89 0.00 1.82
45 46 7.285858 GTCAGGAGACAATTCATACCTAGTACT 59.714 40.741 0.00 0.00 44.34 2.73
105 107 8.425429 TGATAATTATCGACAGTGATGGCACAG 61.425 40.741 18.35 0.00 40.24 3.66
106 108 6.685116 TGATAATTATCGACAGTGATGGCACA 60.685 38.462 18.35 0.00 40.24 4.57
107 109 5.696270 TGATAATTATCGACAGTGATGGCAC 59.304 40.000 18.35 0.00 39.15 5.01
125 127 8.485392 CAAACAAAATCCCCTACCAATGATAAT 58.515 33.333 0.00 0.00 0.00 1.28
126 128 7.580495 GCAAACAAAATCCCCTACCAATGATAA 60.580 37.037 0.00 0.00 0.00 1.75
127 129 6.127196 GCAAACAAAATCCCCTACCAATGATA 60.127 38.462 0.00 0.00 0.00 2.15
128 130 5.338300 GCAAACAAAATCCCCTACCAATGAT 60.338 40.000 0.00 0.00 0.00 2.45
130 132 4.252878 GCAAACAAAATCCCCTACCAATG 58.747 43.478 0.00 0.00 0.00 2.82
131 133 3.906846 TGCAAACAAAATCCCCTACCAAT 59.093 39.130 0.00 0.00 0.00 3.16
141 144 2.472488 CACGGAGCTTGCAAACAAAATC 59.528 45.455 0.00 0.00 34.74 2.17
154 157 2.583441 TTACAGGCTGCACGGAGCT 61.583 57.895 15.89 0.00 45.94 4.09
198 205 3.418068 GTGCACAGCTGAGGCGAC 61.418 66.667 23.35 17.95 44.37 5.19
246 254 1.221466 CGCGTGCCTTCTTTCTCACA 61.221 55.000 0.00 0.00 0.00 3.58
248 256 2.317609 GCGCGTGCCTTCTTTCTCA 61.318 57.895 10.56 0.00 33.98 3.27
273 281 6.441274 TCAAGCTCAAAAATAGCAGTTTCAG 58.559 36.000 0.00 0.00 42.62 3.02
290 299 3.137533 GGCAGGTATTCAGATCAAGCTC 58.862 50.000 0.00 0.00 0.00 4.09
291 300 2.158696 GGGCAGGTATTCAGATCAAGCT 60.159 50.000 0.00 0.00 0.00 3.74
305 314 1.071471 CTTTCTCACACGGGCAGGT 59.929 57.895 0.00 0.00 0.00 4.00
317 326 2.289002 CCACACACAGCTGTTCTTTCTC 59.711 50.000 18.94 0.00 0.00 2.87
318 327 2.092968 TCCACACACAGCTGTTCTTTCT 60.093 45.455 18.94 0.00 0.00 2.52
319 328 2.032178 GTCCACACACAGCTGTTCTTTC 59.968 50.000 18.94 1.12 0.00 2.62
320 329 2.017049 GTCCACACACAGCTGTTCTTT 58.983 47.619 18.94 0.00 0.00 2.52
321 330 1.210478 AGTCCACACACAGCTGTTCTT 59.790 47.619 18.94 0.91 0.00 2.52
322 331 0.833287 AGTCCACACACAGCTGTTCT 59.167 50.000 18.94 1.63 0.00 3.01
356 371 1.032014 AGTTTGACTTTGGCATGCGT 58.968 45.000 12.44 3.26 0.00 5.24
422 3459 1.540607 CGATAAATGCGCTCGCGACT 61.541 55.000 16.26 0.00 45.51 4.18
424 3461 3.221008 CGATAAATGCGCTCGCGA 58.779 55.556 16.26 9.26 45.51 5.87
451 3488 1.734047 CGTCTCCCGCTCTTCTTCTTG 60.734 57.143 0.00 0.00 0.00 3.02
469 3506 0.531200 GGAACGTCCATCTTCTCCGT 59.469 55.000 0.00 0.00 36.28 4.69
470 3507 0.530744 TGGAACGTCCATCTTCTCCG 59.469 55.000 3.02 0.00 42.67 4.63
494 3531 1.202927 CCCGCCATTCCCATTACTGAT 60.203 52.381 0.00 0.00 0.00 2.90
523 3561 0.043310 GTCATAACGAACGCGATGGC 60.043 55.000 15.93 1.76 41.64 4.40
604 3655 2.498078 GGATGGTGTCCTATAGCTAGCC 59.502 54.545 12.13 0.00 44.16 3.93
651 3704 1.463674 ATGAAACAGCGTGAATCCCC 58.536 50.000 0.00 0.00 0.00 4.81
652 3705 2.487762 TGAATGAAACAGCGTGAATCCC 59.512 45.455 0.00 0.00 0.00 3.85
710 3964 8.918116 GGCATGTACATATCTATCTAGGATTCA 58.082 37.037 8.32 0.00 0.00 2.57
727 3981 2.230992 GTGCATTTCAAGGGCATGTACA 59.769 45.455 0.00 0.00 40.05 2.90
728 3982 2.417243 GGTGCATTTCAAGGGCATGTAC 60.417 50.000 0.00 0.00 40.05 2.90
782 4038 2.896854 TGCGCCATCGAATGAGCC 60.897 61.111 4.18 0.00 38.10 4.70
906 4171 2.442272 GGGAGGTGGCTAGCGAGA 60.442 66.667 9.00 0.00 0.00 4.04
908 4173 2.442272 GAGGGAGGTGGCTAGCGA 60.442 66.667 9.00 0.68 0.00 4.93
912 4177 1.076923 GACGAGAGGGAGGTGGCTA 60.077 63.158 0.00 0.00 0.00 3.93
913 4178 2.363147 GACGAGAGGGAGGTGGCT 60.363 66.667 0.00 0.00 0.00 4.75
914 4179 3.462678 GGACGAGAGGGAGGTGGC 61.463 72.222 0.00 0.00 0.00 5.01
915 4180 3.141488 CGGACGAGAGGGAGGTGG 61.141 72.222 0.00 0.00 0.00 4.61
916 4181 3.827898 GCGGACGAGAGGGAGGTG 61.828 72.222 0.00 0.00 0.00 4.00
1065 4337 2.822561 TGAGAGTGAGAGTGAAAGCGAT 59.177 45.455 0.00 0.00 0.00 4.58
1439 4717 2.046892 GCAGCAGAAGGGCTCGAA 60.047 61.111 0.00 0.00 43.68 3.71
1459 4737 2.182537 GCAAATCCAGCGGCCAAG 59.817 61.111 2.24 0.00 0.00 3.61
1462 4740 4.503314 GCAGCAAATCCAGCGGCC 62.503 66.667 0.00 0.00 45.42 6.13
1487 4765 0.172352 CCACCTCAAGAGAGACTCGC 59.828 60.000 0.00 0.00 44.98 5.03
1488 4766 1.827681 TCCACCTCAAGAGAGACTCG 58.172 55.000 0.00 0.00 44.98 4.18
1489 4767 4.221703 TCAAATCCACCTCAAGAGAGACTC 59.778 45.833 0.00 0.00 44.98 3.36
1490 4768 4.163427 TCAAATCCACCTCAAGAGAGACT 58.837 43.478 0.00 0.00 44.98 3.24
1656 4937 2.293122 TGAACCCGCAACTGAAATTCTG 59.707 45.455 0.00 0.00 0.00 3.02
1670 4951 7.968405 CCAGAAAGAATTATTAAACTGAACCCG 59.032 37.037 12.73 0.00 0.00 5.28
1818 5201 2.430465 GAGCATACATATGGCCACTGG 58.570 52.381 8.16 1.93 34.32 4.00
1850 5240 4.737855 ACTGAAACTGTGTGTCTGTACT 57.262 40.909 0.00 0.00 31.73 2.73
1851 5241 4.868171 TGAACTGAAACTGTGTGTCTGTAC 59.132 41.667 1.80 0.00 32.18 2.90
1852 5242 4.868171 GTGAACTGAAACTGTGTGTCTGTA 59.132 41.667 1.80 0.00 32.18 2.74
1853 5243 3.684788 GTGAACTGAAACTGTGTGTCTGT 59.315 43.478 0.00 0.00 34.25 3.41
1856 5257 2.671396 ACGTGAACTGAAACTGTGTGTC 59.329 45.455 0.00 0.00 0.00 3.67
1892 5293 1.381191 TCGGCTCCATGGCACTAGA 60.381 57.895 6.96 0.00 41.89 2.43
1934 5345 9.882996 GCACGTACAGTATATATTAGTTGTACA 57.117 33.333 18.45 0.00 40.32 2.90
1949 5360 0.736636 CGGAGATGGCACGTACAGTA 59.263 55.000 0.00 0.00 0.00 2.74
1950 5361 1.248785 ACGGAGATGGCACGTACAGT 61.249 55.000 0.00 0.00 39.30 3.55
1952 5363 1.509463 GACGGAGATGGCACGTACA 59.491 57.895 0.61 0.00 41.40 2.90
1953 5364 1.585521 CGACGGAGATGGCACGTAC 60.586 63.158 0.61 0.00 41.40 3.67
1954 5365 2.795973 CGACGGAGATGGCACGTA 59.204 61.111 0.61 0.00 41.40 3.57
1955 5366 4.796231 GCGACGGAGATGGCACGT 62.796 66.667 0.15 0.15 44.35 4.49
1956 5367 4.794439 TGCGACGGAGATGGCACG 62.794 66.667 0.00 0.00 0.00 5.34
1957 5368 2.887568 CTGCGACGGAGATGGCAC 60.888 66.667 11.36 0.00 0.00 5.01
2090 5502 2.003301 GCCTTGTCCGCTTAGAAGAAG 58.997 52.381 0.00 0.00 0.00 2.85
2167 5583 2.488545 GCACAGACTAGAGACGGAGAAA 59.511 50.000 0.00 0.00 0.00 2.52
2311 5733 1.154654 GCGTTGCTACACTTCACGC 60.155 57.895 0.00 0.00 37.93 5.34
2328 5750 2.411547 GCACACGACAATGTTACTGAGC 60.412 50.000 0.00 0.00 0.00 4.26
2333 5755 0.233590 TGCGCACACGACAATGTTAC 59.766 50.000 5.66 0.00 43.93 2.50
2356 5778 3.223435 GTCACGAGGAAGATATGAGGGA 58.777 50.000 0.00 0.00 0.00 4.20
2435 5880 5.556915 AGGAATTTCGTGTTGTAATGGAGA 58.443 37.500 0.00 0.00 0.00 3.71
2525 6402 8.642885 GCGATATATACGCGTATATACAGTACT 58.357 37.037 40.60 30.38 46.05 2.73
2541 6418 8.328864 GCATTAGGCTAACTTTGCGATATATAC 58.671 37.037 9.55 0.00 40.25 1.47
2542 6419 8.420374 GCATTAGGCTAACTTTGCGATATATA 57.580 34.615 9.55 0.00 40.25 0.86
2543 6420 7.308782 GCATTAGGCTAACTTTGCGATATAT 57.691 36.000 9.55 0.00 40.25 0.86
2547 6424 3.971032 GCATTAGGCTAACTTTGCGAT 57.029 42.857 9.55 0.00 40.25 4.58
2549 6426 2.091152 CGCATTAGGCTAACTTTGCG 57.909 50.000 28.47 28.47 46.59 4.85
2550 6427 3.487563 AACGCATTAGGCTAACTTTGC 57.512 42.857 17.37 17.37 41.67 3.68
2551 6428 4.857037 GGAAAACGCATTAGGCTAACTTTG 59.143 41.667 9.55 5.56 41.67 2.77
2552 6429 4.379082 CGGAAAACGCATTAGGCTAACTTT 60.379 41.667 9.55 4.74 41.67 2.66
2553 6430 3.126343 CGGAAAACGCATTAGGCTAACTT 59.874 43.478 9.55 0.00 41.67 2.66
2556 6433 2.933906 CTCGGAAAACGCATTAGGCTAA 59.066 45.455 9.79 9.79 43.86 3.09
2558 6435 1.369625 CTCGGAAAACGCATTAGGCT 58.630 50.000 0.00 0.00 43.86 4.58
2559 6436 0.377203 CCTCGGAAAACGCATTAGGC 59.623 55.000 0.00 0.00 43.86 3.93
2560 6437 0.377203 GCCTCGGAAAACGCATTAGG 59.623 55.000 0.00 0.00 43.86 2.69
2561 6438 1.369625 AGCCTCGGAAAACGCATTAG 58.630 50.000 0.00 0.00 43.86 1.73
2563 6440 1.467342 GTTAGCCTCGGAAAACGCATT 59.533 47.619 0.00 0.00 43.86 3.56
2565 6442 0.034337 AGTTAGCCTCGGAAAACGCA 59.966 50.000 0.00 0.00 43.86 5.24
2566 6443 1.154197 AAGTTAGCCTCGGAAAACGC 58.846 50.000 0.00 0.00 43.86 4.84
2567 6444 2.803956 TCAAAGTTAGCCTCGGAAAACG 59.196 45.455 0.00 0.00 46.11 3.60
2568 6445 3.058432 GGTCAAAGTTAGCCTCGGAAAAC 60.058 47.826 0.00 0.00 0.00 2.43
2571 6448 1.695242 TGGTCAAAGTTAGCCTCGGAA 59.305 47.619 0.00 0.00 0.00 4.30
2572 6449 1.344065 TGGTCAAAGTTAGCCTCGGA 58.656 50.000 0.00 0.00 0.00 4.55
2573 6450 2.178912 TTGGTCAAAGTTAGCCTCGG 57.821 50.000 0.00 0.00 0.00 4.63
2574 6451 6.436843 AATATTTGGTCAAAGTTAGCCTCG 57.563 37.500 2.55 0.00 33.32 4.63
2575 6452 8.732746 TCTAATATTTGGTCAAAGTTAGCCTC 57.267 34.615 17.32 0.00 35.14 4.70
2576 6453 7.283354 GCTCTAATATTTGGTCAAAGTTAGCCT 59.717 37.037 17.32 0.41 35.14 4.58
2577 6454 7.067008 TGCTCTAATATTTGGTCAAAGTTAGCC 59.933 37.037 17.32 13.62 35.14 3.93
2598 6475 8.859236 AGTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
2607 6484 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
2609 6486 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
2610 6487 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
2612 6489 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
2613 6490 3.730715 GTGCTTTGTGTAAGTTGCATGTC 59.269 43.478 0.00 0.00 36.19 3.06
2614 6491 3.130164 TGTGCTTTGTGTAAGTTGCATGT 59.870 39.130 0.00 0.00 36.19 3.21
2617 6494 2.159310 GGTGTGCTTTGTGTAAGTTGCA 60.159 45.455 0.00 0.00 36.19 4.08
2618 6495 2.459934 GGTGTGCTTTGTGTAAGTTGC 58.540 47.619 0.00 0.00 36.19 4.17
2619 6496 2.096819 ACGGTGTGCTTTGTGTAAGTTG 59.903 45.455 0.00 0.00 36.19 3.16
2620 6497 2.361789 ACGGTGTGCTTTGTGTAAGTT 58.638 42.857 0.00 0.00 36.19 2.66
2622 6499 4.539509 TTAACGGTGTGCTTTGTGTAAG 57.460 40.909 0.00 0.00 36.90 2.34
2623 6500 4.959596 TTTAACGGTGTGCTTTGTGTAA 57.040 36.364 0.00 0.00 0.00 2.41
2624 6501 5.502153 AATTTAACGGTGTGCTTTGTGTA 57.498 34.783 0.00 0.00 0.00 2.90
2626 6503 3.420576 CGAATTTAACGGTGTGCTTTGTG 59.579 43.478 0.00 0.00 0.00 3.33
2627 6504 3.065648 ACGAATTTAACGGTGTGCTTTGT 59.934 39.130 0.00 0.00 34.93 2.83
2628 6505 3.420576 CACGAATTTAACGGTGTGCTTTG 59.579 43.478 0.00 0.00 34.93 2.77
2629 6506 3.065648 ACACGAATTTAACGGTGTGCTTT 59.934 39.130 0.00 0.00 34.93 3.51
2630 6507 2.614983 ACACGAATTTAACGGTGTGCTT 59.385 40.909 0.00 0.00 34.93 3.91
2632 6509 2.286536 ACACACGAATTTAACGGTGTGC 60.287 45.455 19.53 0.00 41.40 4.57
2635 6512 3.863396 TCACACACGAATTTAACGGTG 57.137 42.857 0.00 0.00 37.66 4.94
2636 6513 4.260866 CCTTTCACACACGAATTTAACGGT 60.261 41.667 0.00 0.00 34.93 4.83
2639 6516 4.909880 GCTCCTTTCACACACGAATTTAAC 59.090 41.667 0.00 0.00 0.00 2.01
2640 6517 4.819630 AGCTCCTTTCACACACGAATTTAA 59.180 37.500 0.00 0.00 0.00 1.52
2641 6518 4.385825 AGCTCCTTTCACACACGAATTTA 58.614 39.130 0.00 0.00 0.00 1.40
2642 6519 3.214328 AGCTCCTTTCACACACGAATTT 58.786 40.909 0.00 0.00 0.00 1.82
2643 6520 2.851195 AGCTCCTTTCACACACGAATT 58.149 42.857 0.00 0.00 0.00 2.17
2644 6521 2.550830 AGCTCCTTTCACACACGAAT 57.449 45.000 0.00 0.00 0.00 3.34
2646 6523 1.540363 GGAAGCTCCTTTCACACACGA 60.540 52.381 0.00 0.00 32.53 4.35
2648 6525 1.967319 TGGAAGCTCCTTTCACACAC 58.033 50.000 0.00 0.00 37.46 3.82
2649 6526 2.727123 TTGGAAGCTCCTTTCACACA 57.273 45.000 0.00 0.00 37.46 3.72
2650 6527 3.149196 TCATTGGAAGCTCCTTTCACAC 58.851 45.455 0.00 0.00 37.46 3.82
2652 6529 7.807977 TTATATCATTGGAAGCTCCTTTCAC 57.192 36.000 0.00 0.00 37.46 3.18
2653 6530 9.425248 AAATTATATCATTGGAAGCTCCTTTCA 57.575 29.630 0.00 0.00 37.46 2.69
2656 6533 9.425248 TGAAAATTATATCATTGGAAGCTCCTT 57.575 29.630 0.00 0.00 37.46 3.36
2657 6534 8.854117 GTGAAAATTATATCATTGGAAGCTCCT 58.146 33.333 0.00 0.00 37.46 3.69
2664 6541 9.531942 GCACAATGTGAAAATTATATCATTGGA 57.468 29.630 18.66 0.00 43.25 3.53
2665 6542 9.315525 TGCACAATGTGAAAATTATATCATTGG 57.684 29.630 18.66 14.04 43.25 3.16
2684 6561 9.565090 AGATTAATAGTACATGACATGCACAAT 57.435 29.630 18.79 10.52 0.00 2.71
2685 6562 8.962884 AGATTAATAGTACATGACATGCACAA 57.037 30.769 18.79 6.65 0.00 3.33
2686 6563 8.829612 CAAGATTAATAGTACATGACATGCACA 58.170 33.333 18.79 7.29 0.00 4.57
2688 6565 8.962884 ACAAGATTAATAGTACATGACATGCA 57.037 30.769 15.49 0.00 0.00 3.96
2689 6566 9.045223 TGACAAGATTAATAGTACATGACATGC 57.955 33.333 15.49 0.11 0.00 4.06
2703 6580 8.184192 CCGCTTTTGACTATTGACAAGATTAAT 58.816 33.333 0.00 0.00 0.00 1.40
2706 6583 5.473504 ACCGCTTTTGACTATTGACAAGATT 59.526 36.000 0.00 0.00 0.00 2.40
2707 6584 5.003804 ACCGCTTTTGACTATTGACAAGAT 58.996 37.500 0.00 0.00 0.00 2.40
2709 6586 4.452455 AGACCGCTTTTGACTATTGACAAG 59.548 41.667 0.00 0.00 0.00 3.16
2710 6587 4.385825 AGACCGCTTTTGACTATTGACAA 58.614 39.130 0.00 0.00 0.00 3.18
2711 6588 4.002906 AGACCGCTTTTGACTATTGACA 57.997 40.909 0.00 0.00 0.00 3.58
2715 6592 6.385649 TTTTCAAGACCGCTTTTGACTATT 57.614 33.333 0.00 0.00 33.36 1.73
2716 6593 6.206498 GTTTTTCAAGACCGCTTTTGACTAT 58.794 36.000 0.00 0.00 33.36 2.12
2717 6594 5.575019 GTTTTTCAAGACCGCTTTTGACTA 58.425 37.500 0.00 0.00 33.36 2.59
2718 6595 4.421058 GTTTTTCAAGACCGCTTTTGACT 58.579 39.130 0.00 0.00 33.36 3.41
2719 6596 3.239712 CGTTTTTCAAGACCGCTTTTGAC 59.760 43.478 0.00 0.00 33.36 3.18
2720 6597 3.430931 CGTTTTTCAAGACCGCTTTTGA 58.569 40.909 0.00 0.00 30.14 2.69
2722 6599 2.190161 GCGTTTTTCAAGACCGCTTTT 58.810 42.857 0.00 0.00 41.06 2.27
2723 6600 1.133407 TGCGTTTTTCAAGACCGCTTT 59.867 42.857 0.00 0.00 44.32 3.51
2724 6601 0.736053 TGCGTTTTTCAAGACCGCTT 59.264 45.000 0.00 0.00 44.32 4.68
2725 6602 0.951558 ATGCGTTTTTCAAGACCGCT 59.048 45.000 0.00 0.00 44.32 5.52
2728 6605 3.242518 GCCTAATGCGTTTTTCAAGACC 58.757 45.455 0.00 0.00 0.00 3.85
2729 6606 3.242518 GGCCTAATGCGTTTTTCAAGAC 58.757 45.455 0.00 0.00 42.61 3.01
2730 6607 2.230266 GGGCCTAATGCGTTTTTCAAGA 59.770 45.455 0.84 0.00 42.61 3.02
2731 6608 2.231235 AGGGCCTAATGCGTTTTTCAAG 59.769 45.455 2.82 0.00 42.61 3.02
2732 6609 2.243810 AGGGCCTAATGCGTTTTTCAA 58.756 42.857 2.82 0.00 42.61 2.69
2733 6610 1.917872 AGGGCCTAATGCGTTTTTCA 58.082 45.000 2.82 0.00 42.61 2.69
2735 6612 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
2736 6613 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
2737 6614 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
2738 6615 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
2739 6616 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
2740 6617 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
2741 6618 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
2744 6621 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
2745 6622 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
2746 6623 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
2747 6624 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
2748 6625 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
2749 6626 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
2753 6630 6.511083 AGACTACTCCCTCCTTCCATCTATAT 59.489 42.308 0.00 0.00 0.00 0.86
2754 6631 5.858408 AGACTACTCCCTCCTTCCATCTATA 59.142 44.000 0.00 0.00 0.00 1.31
2755 6632 4.672650 AGACTACTCCCTCCTTCCATCTAT 59.327 45.833 0.00 0.00 0.00 1.98
2757 6634 2.862597 AGACTACTCCCTCCTTCCATCT 59.137 50.000 0.00 0.00 0.00 2.90
2759 6636 3.786213 AAGACTACTCCCTCCTTCCAT 57.214 47.619 0.00 0.00 0.00 3.41
2760 6637 3.562108 AAAGACTACTCCCTCCTTCCA 57.438 47.619 0.00 0.00 0.00 3.53
2761 6638 4.278919 CGATAAAGACTACTCCCTCCTTCC 59.721 50.000 0.00 0.00 0.00 3.46
2763 6640 5.126699 TCGATAAAGACTACTCCCTCCTT 57.873 43.478 0.00 0.00 0.00 3.36
2764 6641 4.792513 TCGATAAAGACTACTCCCTCCT 57.207 45.455 0.00 0.00 0.00 3.69
2765 6642 5.848833 TTTCGATAAAGACTACTCCCTCC 57.151 43.478 0.00 0.00 0.00 4.30
2767 6644 8.707796 TGATATTTCGATAAAGACTACTCCCT 57.292 34.615 0.00 0.00 0.00 4.20
2768 6645 9.760077 TTTGATATTTCGATAAAGACTACTCCC 57.240 33.333 0.00 0.00 0.00 4.30
2790 7205 9.973661 TCCATTCCTGAATATAAGTCTTTTTGA 57.026 29.630 0.00 0.00 0.00 2.69
2792 7207 9.413734 CCTCCATTCCTGAATATAAGTCTTTTT 57.586 33.333 0.00 0.00 0.00 1.94
2793 7208 8.001292 CCCTCCATTCCTGAATATAAGTCTTTT 58.999 37.037 0.00 0.00 0.00 2.27
2794 7209 7.350921 TCCCTCCATTCCTGAATATAAGTCTTT 59.649 37.037 0.00 0.00 0.00 2.52
2795 7210 6.851836 TCCCTCCATTCCTGAATATAAGTCTT 59.148 38.462 0.00 0.00 0.00 3.01
2796 7211 6.393897 TCCCTCCATTCCTGAATATAAGTCT 58.606 40.000 0.00 0.00 0.00 3.24
2802 7217 4.040952 CGAACTCCCTCCATTCCTGAATAT 59.959 45.833 0.00 0.00 0.00 1.28
2813 7228 2.922503 TGCTGCGAACTCCCTCCA 60.923 61.111 0.00 0.00 0.00 3.86
2825 7240 0.590732 CATCGCGAAATTCCTGCTGC 60.591 55.000 15.24 0.00 0.00 5.25
2826 7241 1.009078 TCATCGCGAAATTCCTGCTG 58.991 50.000 15.24 3.09 0.00 4.41
2829 7244 1.398041 TGCTTCATCGCGAAATTCCTG 59.602 47.619 15.24 5.72 31.71 3.86
2876 7302 0.539051 ACTCCTCCAATCCTCGCAAG 59.461 55.000 0.00 0.00 0.00 4.01
2877 7303 0.250234 CACTCCTCCAATCCTCGCAA 59.750 55.000 0.00 0.00 0.00 4.85
2878 7304 1.900351 CACTCCTCCAATCCTCGCA 59.100 57.895 0.00 0.00 0.00 5.10
2879 7305 1.522580 GCACTCCTCCAATCCTCGC 60.523 63.158 0.00 0.00 0.00 5.03
2880 7306 0.103937 GAGCACTCCTCCAATCCTCG 59.896 60.000 0.00 0.00 34.35 4.63
2881 7307 0.103937 CGAGCACTCCTCCAATCCTC 59.896 60.000 0.00 0.00 37.27 3.71
2882 7308 0.324738 TCGAGCACTCCTCCAATCCT 60.325 55.000 0.00 0.00 37.27 3.24
2883 7309 0.755686 ATCGAGCACTCCTCCAATCC 59.244 55.000 0.00 0.00 37.27 3.01
2884 7310 2.625790 AGTATCGAGCACTCCTCCAATC 59.374 50.000 0.00 0.00 37.27 2.67
2885 7311 2.672098 AGTATCGAGCACTCCTCCAAT 58.328 47.619 0.00 0.00 37.27 3.16
2886 7312 2.145397 AGTATCGAGCACTCCTCCAA 57.855 50.000 0.00 0.00 37.27 3.53
2887 7313 2.145397 AAGTATCGAGCACTCCTCCA 57.855 50.000 3.17 0.00 37.27 3.86
2888 7314 2.691011 AGAAAGTATCGAGCACTCCTCC 59.309 50.000 3.17 0.00 37.27 4.30
2889 7315 3.701241 CAGAAAGTATCGAGCACTCCTC 58.299 50.000 3.17 4.16 37.22 3.71
2890 7316 2.159170 GCAGAAAGTATCGAGCACTCCT 60.159 50.000 3.17 2.17 35.08 3.69
2912 7338 3.795101 CCTTTCATTCATTGCATTCGCTC 59.205 43.478 0.00 0.00 39.64 5.03
2918 7344 4.439057 GTGATGCCTTTCATTCATTGCAT 58.561 39.130 0.00 0.00 41.73 3.96
2965 7391 2.869192 GGAATTGAATGCCTCTCGTCTC 59.131 50.000 0.00 0.00 0.00 3.36
3025 7451 8.206189 TGACTAGTTTGATATGATGATGCTGAA 58.794 33.333 0.00 0.00 0.00 3.02
3026 7452 7.654923 GTGACTAGTTTGATATGATGATGCTGA 59.345 37.037 0.00 0.00 0.00 4.26
3029 7455 7.719778 TGTGACTAGTTTGATATGATGATGC 57.280 36.000 0.00 0.00 0.00 3.91
3035 7461 7.092891 ACTCCCATTGTGACTAGTTTGATATGA 60.093 37.037 0.00 0.00 0.00 2.15
3036 7462 7.050377 ACTCCCATTGTGACTAGTTTGATATG 58.950 38.462 0.00 0.00 0.00 1.78
3037 7463 7.200434 ACTCCCATTGTGACTAGTTTGATAT 57.800 36.000 0.00 0.00 0.00 1.63
3038 7464 6.620877 ACTCCCATTGTGACTAGTTTGATA 57.379 37.500 0.00 0.00 0.00 2.15
3039 7465 5.505181 ACTCCCATTGTGACTAGTTTGAT 57.495 39.130 0.00 0.00 0.00 2.57
3040 7466 4.974645 ACTCCCATTGTGACTAGTTTGA 57.025 40.909 0.00 0.00 0.00 2.69
3041 7467 6.231211 AGTTACTCCCATTGTGACTAGTTTG 58.769 40.000 0.00 0.00 33.46 2.93
3042 7468 6.435292 AGTTACTCCCATTGTGACTAGTTT 57.565 37.500 0.00 0.00 33.46 2.66
3043 7469 6.435292 AAGTTACTCCCATTGTGACTAGTT 57.565 37.500 0.00 0.00 33.98 2.24
3044 7470 7.234988 AGTTAAGTTACTCCCATTGTGACTAGT 59.765 37.037 0.00 0.00 33.98 2.57
3045 7471 7.612677 AGTTAAGTTACTCCCATTGTGACTAG 58.387 38.462 0.00 0.00 33.98 2.57
3046 7472 7.549147 AGTTAAGTTACTCCCATTGTGACTA 57.451 36.000 0.00 0.00 33.98 2.59
3047 7473 6.435292 AGTTAAGTTACTCCCATTGTGACT 57.565 37.500 0.00 0.00 36.11 3.41
3048 7474 7.384477 ACTAGTTAAGTTACTCCCATTGTGAC 58.616 38.462 0.00 0.00 33.35 3.67
3049 7475 7.549147 ACTAGTTAAGTTACTCCCATTGTGA 57.451 36.000 0.00 0.00 33.35 3.58
3050 7476 9.148104 GTTACTAGTTAAGTTACTCCCATTGTG 57.852 37.037 0.00 0.00 39.80 3.33
3051 7477 8.873144 TGTTACTAGTTAAGTTACTCCCATTGT 58.127 33.333 0.00 0.00 38.33 2.71
3052 7478 9.886132 ATGTTACTAGTTAAGTTACTCCCATTG 57.114 33.333 0.00 0.00 38.33 2.82
3054 7480 9.263446 TGATGTTACTAGTTAAGTTACTCCCAT 57.737 33.333 0.00 0.00 38.33 4.00
3055 7481 8.526147 GTGATGTTACTAGTTAAGTTACTCCCA 58.474 37.037 0.00 0.00 38.33 4.37
3056 7482 8.526147 TGTGATGTTACTAGTTAAGTTACTCCC 58.474 37.037 0.00 0.00 38.33 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.