Multiple sequence alignment - TraesCS1D01G305500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G305500 chr1D 100.000 6713 0 0 1 6713 403047241 403053953 0.000000e+00 12397.0
1 TraesCS1D01G305500 chr1D 98.246 57 1 0 3210 3266 403050347 403050403 4.280000e-17 100.0
2 TraesCS1D01G305500 chr1D 98.246 57 1 0 3107 3163 403050450 403050506 4.280000e-17 100.0
3 TraesCS1D01G305500 chr1B 94.314 3588 153 28 3158 6713 541001700 541005268 0.000000e+00 5448.0
4 TraesCS1D01G305500 chr1B 91.247 2639 123 44 557 3111 540999080 541001694 0.000000e+00 3494.0
5 TraesCS1D01G305500 chr1B 88.396 293 19 8 1 278 540997049 540997341 8.340000e-89 339.0
6 TraesCS1D01G305500 chr1B 96.491 57 2 0 3107 3163 541001752 541001808 1.990000e-15 95.3
7 TraesCS1D01G305500 chr1A 88.707 2807 146 62 427 3111 498162297 498165054 0.000000e+00 3269.0
8 TraesCS1D01G305500 chr1A 95.560 1847 51 9 3161 5003 498165063 498166882 0.000000e+00 2928.0
9 TraesCS1D01G305500 chr1A 93.338 1441 65 12 5301 6713 498167363 498168800 0.000000e+00 2100.0
10 TraesCS1D01G305500 chr1A 88.223 467 32 12 1 450 498161691 498162151 2.760000e-148 536.0
11 TraesCS1D01G305500 chr1A 95.349 301 13 1 5000 5299 498166985 498167285 1.690000e-130 477.0
12 TraesCS1D01G305500 chr1A 96.491 57 2 0 3107 3163 498165113 498165169 1.990000e-15 95.3
13 TraesCS1D01G305500 chr3D 80.303 396 70 6 4265 4652 443710792 443710397 6.580000e-75 292.0
14 TraesCS1D01G305500 chr3B 79.849 397 70 8 4265 4652 581705672 581705277 1.430000e-71 281.0
15 TraesCS1D01G305500 chr3A 85.222 203 30 0 4265 4467 584934343 584934141 6.820000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G305500 chr1D 403047241 403053953 6712 False 4199.000 12397 98.830667 1 6713 3 chr1D.!!$F1 6712
1 TraesCS1D01G305500 chr1B 540997049 541005268 8219 False 2344.075 5448 92.612000 1 6713 4 chr1B.!!$F1 6712
2 TraesCS1D01G305500 chr1A 498161691 498168800 7109 False 1567.550 3269 92.944667 1 6713 6 chr1A.!!$F1 6712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
545 1723 0.890683 CCCCTCAACCTTTGACATGC 59.109 55.000 0.00 0.0 35.46 4.06 F
620 2336 1.298014 CAGTCCTCTCAAGCCCCAC 59.702 63.158 0.00 0.0 0.00 4.61 F
1326 3125 1.516423 GGAGGAGTCGTTGGGCTAC 59.484 63.158 0.00 0.0 0.00 3.58 F
1613 3424 0.827368 TTTTTGGAAAGGGCGTGCTT 59.173 45.000 0.00 0.0 0.00 3.91 F
2389 4210 1.446907 ATGAAGAAGCAGCCAGTTCG 58.553 50.000 0.00 0.0 0.00 3.95 F
2401 4222 2.105477 AGCCAGTTCGATGGAATATGCT 59.895 45.455 9.29 0.0 43.57 3.79 F
3433 5290 2.373540 TGCTCTTATAAACCGCACGT 57.626 45.000 0.00 0.0 0.00 4.49 F
4190 6048 1.333619 GCTCGCCAAGAAAACTGAACA 59.666 47.619 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 3266 0.870393 AAACAGACATCACAGCAGCG 59.130 50.000 0.00 0.0 0.00 5.18 R
1468 3267 1.875514 TGAAACAGACATCACAGCAGC 59.124 47.619 0.00 0.0 0.00 5.25 R
3112 4968 3.088532 GCCAGAATGTCAATAACACCCA 58.911 45.455 0.00 0.0 41.75 4.51 R
3113 4969 3.088532 TGCCAGAATGTCAATAACACCC 58.911 45.455 0.00 0.0 41.75 4.61 R
4167 6024 1.202639 TCAGTTTTCTTGGCGAGCAGA 60.203 47.619 0.00 0.0 0.00 4.26 R
4168 6025 1.229428 TCAGTTTTCTTGGCGAGCAG 58.771 50.000 0.00 0.0 0.00 4.24 R
4378 6236 2.625790 GTGTGGCCCTCAGTATCTCTAG 59.374 54.545 0.00 0.0 0.00 2.43 R
5762 7809 0.948141 GATAGCAAGCCGCAGCCTAG 60.948 60.000 4.42 0.0 46.13 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 120 1.152798 TGGTGGTGTGCAGCAATCA 60.153 52.632 0.00 5.34 40.82 2.57
124 134 2.097825 GCAATCAGACCAATCAAGGCT 58.902 47.619 0.00 0.00 0.00 4.58
133 143 4.884164 AGACCAATCAAGGCTAATTAGTGC 59.116 41.667 13.91 1.35 0.00 4.40
135 145 4.641989 ACCAATCAAGGCTAATTAGTGCTG 59.358 41.667 13.91 8.47 0.00 4.41
163 174 5.104374 GTGCAAAAATGGACCAGATACATG 58.896 41.667 0.00 0.00 29.40 3.21
249 267 6.475402 CACGCCGCTAATCATGACAATATATA 59.525 38.462 0.00 0.00 0.00 0.86
276 321 9.843334 TTTAACCAATGTGACGGTTTATTATTC 57.157 29.630 0.00 0.00 42.99 1.75
277 322 7.455641 AACCAATGTGACGGTTTATTATTCA 57.544 32.000 0.00 0.00 42.99 2.57
278 323 7.455641 ACCAATGTGACGGTTTATTATTCAA 57.544 32.000 0.00 0.00 28.43 2.69
279 324 7.887381 ACCAATGTGACGGTTTATTATTCAAA 58.113 30.769 0.00 0.00 28.43 2.69
280 325 8.361139 ACCAATGTGACGGTTTATTATTCAAAA 58.639 29.630 0.00 0.00 28.43 2.44
281 326 9.197694 CCAATGTGACGGTTTATTATTCAAAAA 57.802 29.630 0.00 0.00 0.00 1.94
326 371 5.817296 TCATATTGCGACATAAGCTCAAAGT 59.183 36.000 0.00 0.00 35.28 2.66
346 391 1.901464 TCGCTTTTCCCCTTGCCAC 60.901 57.895 0.00 0.00 0.00 5.01
425 486 6.196079 TCTATGTGTATATCGTCCTGATGC 57.804 41.667 0.00 0.00 37.99 3.91
511 1689 1.473278 ACGCGGTTTGTTCCAGAAAAA 59.527 42.857 12.47 0.00 0.00 1.94
545 1723 0.890683 CCCCTCAACCTTTGACATGC 59.109 55.000 0.00 0.00 35.46 4.06
555 1733 3.006110 ACCTTTGACATGCTCCACATTTG 59.994 43.478 0.00 0.00 36.64 2.32
615 2331 1.620819 TCAGAACCAGTCCTCTCAAGC 59.379 52.381 0.00 0.00 0.00 4.01
620 2336 1.298014 CAGTCCTCTCAAGCCCCAC 59.702 63.158 0.00 0.00 0.00 4.61
621 2337 1.920835 AGTCCTCTCAAGCCCCACC 60.921 63.158 0.00 0.00 0.00 4.61
795 2543 3.004315 ACCAACGAAGCACCACATAAAAG 59.996 43.478 0.00 0.00 0.00 2.27
861 2609 2.125512 CGAGAGGTTCCAAGCCCG 60.126 66.667 0.00 0.00 0.00 6.13
937 2699 1.735369 CGCCAAAACCCAATCAATCCG 60.735 52.381 0.00 0.00 0.00 4.18
1262 3058 2.042435 CCGCTCCTCTTCTCCCCT 60.042 66.667 0.00 0.00 0.00 4.79
1326 3125 1.516423 GGAGGAGTCGTTGGGCTAC 59.484 63.158 0.00 0.00 0.00 3.58
1467 3266 1.153429 CCGATTCGGTGGGTTCCTC 60.153 63.158 17.08 0.00 42.73 3.71
1468 3267 1.518572 CGATTCGGTGGGTTCCTCG 60.519 63.158 0.00 0.00 0.00 4.63
1479 3290 1.364626 GGTTCCTCGCTGCTGTGATG 61.365 60.000 7.34 5.27 31.73 3.07
1493 3304 4.579753 TGCTGTGATGTCTGTTTCATTTCA 59.420 37.500 0.00 0.00 0.00 2.69
1495 3306 5.798934 GCTGTGATGTCTGTTTCATTTCATC 59.201 40.000 0.00 0.00 34.28 2.92
1613 3424 0.827368 TTTTTGGAAAGGGCGTGCTT 59.173 45.000 0.00 0.00 0.00 3.91
1669 3480 4.441495 GCTTCTGTTTACTTTTGCTTGGGT 60.441 41.667 0.00 0.00 0.00 4.51
1673 3484 4.942852 TGTTTACTTTTGCTTGGGTCATG 58.057 39.130 0.00 0.00 0.00 3.07
1675 3486 4.582701 TTACTTTTGCTTGGGTCATGTG 57.417 40.909 0.00 0.00 0.00 3.21
1688 3499 3.882888 GGGTCATGTGTCTGTTCTTCAAA 59.117 43.478 0.00 0.00 0.00 2.69
1730 3541 7.531534 GGAATTTGAATTTGAATTTGAGCAACG 59.468 33.333 0.00 0.00 0.00 4.10
1743 3554 3.198068 TGAGCAACGATTTAGATCCAGC 58.802 45.455 0.00 0.00 0.00 4.85
1745 3556 3.609853 AGCAACGATTTAGATCCAGCAA 58.390 40.909 0.00 0.00 0.00 3.91
1774 3585 7.953493 TCTTTTGGGGTGTAAATATTCTCCTTT 59.047 33.333 0.00 0.00 0.00 3.11
1837 3648 6.775594 ACATGCTTTCTTTCCCCTATTTAC 57.224 37.500 0.00 0.00 0.00 2.01
1865 3676 5.980698 CTGATGTCAGCGTTCATCTAATT 57.019 39.130 15.08 0.00 40.46 1.40
1867 3678 7.103159 CTGATGTCAGCGTTCATCTAATTAG 57.897 40.000 6.11 6.11 40.46 1.73
1868 3679 6.573434 TGATGTCAGCGTTCATCTAATTAGT 58.427 36.000 12.19 0.00 40.46 2.24
1870 3681 7.648112 TGATGTCAGCGTTCATCTAATTAGTAC 59.352 37.037 12.19 6.17 40.46 2.73
1871 3682 7.096884 TGTCAGCGTTCATCTAATTAGTACT 57.903 36.000 12.19 0.00 0.00 2.73
1897 3714 1.699656 CCTTGAGATGAACCGCGCAG 61.700 60.000 8.75 0.00 0.00 5.18
1909 3728 4.142988 TGAACCGCGCAGTTTAATTTCTAG 60.143 41.667 10.88 0.00 0.00 2.43
2354 4175 2.027745 TCCATTGAGCCTCTGTCAACTC 60.028 50.000 0.00 0.00 36.76 3.01
2389 4210 1.446907 ATGAAGAAGCAGCCAGTTCG 58.553 50.000 0.00 0.00 0.00 3.95
2401 4222 2.105477 AGCCAGTTCGATGGAATATGCT 59.895 45.455 9.29 0.00 43.57 3.79
2402 4223 3.324846 AGCCAGTTCGATGGAATATGCTA 59.675 43.478 9.29 0.00 43.57 3.49
2403 4224 3.433615 GCCAGTTCGATGGAATATGCTAC 59.566 47.826 9.29 0.00 43.57 3.58
2404 4225 4.631131 CCAGTTCGATGGAATATGCTACA 58.369 43.478 0.00 0.00 43.57 2.74
2405 4226 4.687948 CCAGTTCGATGGAATATGCTACAG 59.312 45.833 0.00 0.00 43.57 2.74
2674 4503 5.625311 GCTTATTCTTGTGTTTCTTTGGACG 59.375 40.000 0.00 0.00 0.00 4.79
2994 4849 5.700832 TGTTTCTCGCAGTTCTGAAATGTAT 59.299 36.000 17.77 0.00 32.22 2.29
3005 4860 6.435277 AGTTCTGAAATGTATGCCTGTCAATT 59.565 34.615 0.00 0.00 0.00 2.32
3098 4954 5.424757 TGTACATTTCACTTCCCCTATTCG 58.575 41.667 0.00 0.00 0.00 3.34
3105 4961 5.750352 TCACTTCCCCTATTCGTAAACTT 57.250 39.130 0.00 0.00 0.00 2.66
3111 4967 6.610075 TCCCCTATTCGTAAACTTGTACTT 57.390 37.500 0.00 0.00 0.00 2.24
3112 4968 7.008021 TCCCCTATTCGTAAACTTGTACTTT 57.992 36.000 0.00 0.00 0.00 2.66
3113 4969 6.875195 TCCCCTATTCGTAAACTTGTACTTTG 59.125 38.462 0.00 0.00 0.00 2.77
3114 4970 6.093082 CCCCTATTCGTAAACTTGTACTTTGG 59.907 42.308 0.00 0.00 0.00 3.28
3118 4974 4.768583 TCGTAAACTTGTACTTTGGGTGT 58.231 39.130 0.00 0.00 0.00 4.16
3119 4975 5.184711 TCGTAAACTTGTACTTTGGGTGTT 58.815 37.500 0.00 0.00 0.00 3.32
3120 4976 6.344500 TCGTAAACTTGTACTTTGGGTGTTA 58.656 36.000 0.00 0.00 0.00 2.41
3121 4977 6.991531 TCGTAAACTTGTACTTTGGGTGTTAT 59.008 34.615 0.00 0.00 0.00 1.89
3122 4978 7.498570 TCGTAAACTTGTACTTTGGGTGTTATT 59.501 33.333 0.00 0.00 0.00 1.40
3123 4979 7.588488 CGTAAACTTGTACTTTGGGTGTTATTG 59.412 37.037 0.00 0.00 0.00 1.90
3124 4980 7.648039 AAACTTGTACTTTGGGTGTTATTGA 57.352 32.000 0.00 0.00 0.00 2.57
3125 4981 6.628919 ACTTGTACTTTGGGTGTTATTGAC 57.371 37.500 0.00 0.00 0.00 3.18
3126 4982 6.123651 ACTTGTACTTTGGGTGTTATTGACA 58.876 36.000 0.00 0.00 35.42 3.58
3127 4983 6.775629 ACTTGTACTTTGGGTGTTATTGACAT 59.224 34.615 0.00 0.00 41.10 3.06
3128 4984 7.286775 ACTTGTACTTTGGGTGTTATTGACATT 59.713 33.333 0.00 0.00 41.10 2.71
3129 4985 7.209471 TGTACTTTGGGTGTTATTGACATTC 57.791 36.000 0.00 0.00 41.10 2.67
3130 4986 7.001674 TGTACTTTGGGTGTTATTGACATTCT 58.998 34.615 0.00 0.00 41.10 2.40
3131 4987 6.331369 ACTTTGGGTGTTATTGACATTCTG 57.669 37.500 0.00 0.00 41.10 3.02
3132 4988 5.243730 ACTTTGGGTGTTATTGACATTCTGG 59.756 40.000 0.00 0.00 41.10 3.86
3133 4989 3.088532 TGGGTGTTATTGACATTCTGGC 58.911 45.455 0.00 0.00 41.10 4.85
3134 4990 3.088532 GGGTGTTATTGACATTCTGGCA 58.911 45.455 0.00 0.00 41.10 4.92
3135 4991 3.701040 GGGTGTTATTGACATTCTGGCAT 59.299 43.478 0.00 0.00 41.10 4.40
3136 4992 4.160252 GGGTGTTATTGACATTCTGGCATT 59.840 41.667 0.00 0.00 41.10 3.56
3137 4993 5.337491 GGGTGTTATTGACATTCTGGCATTT 60.337 40.000 0.00 0.00 41.10 2.32
3138 4994 6.127479 GGGTGTTATTGACATTCTGGCATTTA 60.127 38.462 0.00 0.00 41.10 1.40
3139 4995 7.319646 GGTGTTATTGACATTCTGGCATTTAA 58.680 34.615 0.00 0.00 41.10 1.52
3140 4996 7.981225 GGTGTTATTGACATTCTGGCATTTAAT 59.019 33.333 0.00 0.00 41.10 1.40
3141 4997 9.023967 GTGTTATTGACATTCTGGCATTTAATC 57.976 33.333 0.00 0.00 41.10 1.75
3142 4998 7.914871 TGTTATTGACATTCTGGCATTTAATCG 59.085 33.333 0.00 0.00 33.90 3.34
3143 4999 5.895636 TTGACATTCTGGCATTTAATCGT 57.104 34.783 0.00 0.00 33.90 3.73
3144 5000 5.895636 TGACATTCTGGCATTTAATCGTT 57.104 34.783 0.00 0.00 24.43 3.85
3145 5001 6.993786 TGACATTCTGGCATTTAATCGTTA 57.006 33.333 0.00 0.00 24.43 3.18
3146 5002 7.566760 TGACATTCTGGCATTTAATCGTTAT 57.433 32.000 0.00 0.00 24.43 1.89
3147 5003 7.639039 TGACATTCTGGCATTTAATCGTTATC 58.361 34.615 0.00 0.00 24.43 1.75
3148 5004 7.281999 TGACATTCTGGCATTTAATCGTTATCA 59.718 33.333 0.00 0.00 24.43 2.15
3149 5005 7.417612 ACATTCTGGCATTTAATCGTTATCAC 58.582 34.615 0.00 0.00 0.00 3.06
3150 5006 6.993786 TTCTGGCATTTAATCGTTATCACA 57.006 33.333 0.00 0.00 0.00 3.58
3151 5007 6.993786 TCTGGCATTTAATCGTTATCACAA 57.006 33.333 0.00 0.00 0.00 3.33
3152 5008 7.566760 TCTGGCATTTAATCGTTATCACAAT 57.433 32.000 0.00 0.00 0.00 2.71
3153 5009 8.669946 TCTGGCATTTAATCGTTATCACAATA 57.330 30.769 0.00 0.00 0.00 1.90
3154 5010 9.114952 TCTGGCATTTAATCGTTATCACAATAA 57.885 29.630 0.00 0.00 0.00 1.40
3155 5011 9.385902 CTGGCATTTAATCGTTATCACAATAAG 57.614 33.333 0.00 0.00 0.00 1.73
3156 5012 7.860373 TGGCATTTAATCGTTATCACAATAAGC 59.140 33.333 0.00 0.00 0.00 3.09
3157 5013 8.076178 GGCATTTAATCGTTATCACAATAAGCT 58.924 33.333 0.00 0.00 0.00 3.74
3158 5014 8.895845 GCATTTAATCGTTATCACAATAAGCTG 58.104 33.333 0.00 0.00 0.00 4.24
3159 5015 9.935682 CATTTAATCGTTATCACAATAAGCTGT 57.064 29.630 0.00 0.00 0.00 4.40
3245 5102 7.914871 TGTTATTGACATTCTGGCATTTAATCG 59.085 33.333 0.00 0.00 33.90 3.34
3292 5149 6.054941 CCTTGGAGTTAAATTGGCTTGTTTT 58.945 36.000 0.00 0.00 0.00 2.43
3433 5290 2.373540 TGCTCTTATAAACCGCACGT 57.626 45.000 0.00 0.00 0.00 4.49
3999 5856 5.389859 TCCTTTTCATTATGCAAGGTGTG 57.610 39.130 17.12 0.00 37.62 3.82
4039 5896 8.589335 TTTATGGAACTAAAGATGCGAGATAC 57.411 34.615 0.00 0.00 0.00 2.24
4040 5897 5.592104 TGGAACTAAAGATGCGAGATACA 57.408 39.130 0.00 0.00 0.00 2.29
4041 5898 5.592054 TGGAACTAAAGATGCGAGATACAG 58.408 41.667 0.00 0.00 0.00 2.74
4042 5899 5.359860 TGGAACTAAAGATGCGAGATACAGA 59.640 40.000 0.00 0.00 0.00 3.41
4043 5900 5.918011 GGAACTAAAGATGCGAGATACAGAG 59.082 44.000 0.00 0.00 0.00 3.35
4044 5901 6.458232 AACTAAAGATGCGAGATACAGAGT 57.542 37.500 0.00 0.00 0.00 3.24
4045 5902 7.255173 GGAACTAAAGATGCGAGATACAGAGTA 60.255 40.741 0.00 0.00 0.00 2.59
4116 5973 5.982356 ACTATGCTAATGCTCTGTTTCTCA 58.018 37.500 0.00 0.00 40.48 3.27
4135 5992 9.455847 GTTTCTCATATCATGTTCTTTATTGGC 57.544 33.333 0.00 0.00 0.00 4.52
4151 6008 8.266473 TCTTTATTGGCATTCAATATTTGGCTT 58.734 29.630 11.96 4.47 44.87 4.35
4170 6027 9.474920 TTTGGCTTCAACAATAATAACTTTCTG 57.525 29.630 0.00 0.00 0.00 3.02
4171 6028 7.090173 TGGCTTCAACAATAATAACTTTCTGC 58.910 34.615 0.00 0.00 0.00 4.26
4172 6029 7.039784 TGGCTTCAACAATAATAACTTTCTGCT 60.040 33.333 0.00 0.00 0.00 4.24
4179 6037 5.741388 ATAATAACTTTCTGCTCGCCAAG 57.259 39.130 0.00 0.00 0.00 3.61
4185 6043 1.967319 TTCTGCTCGCCAAGAAAACT 58.033 45.000 0.00 0.00 0.00 2.66
4190 6048 1.333619 GCTCGCCAAGAAAACTGAACA 59.666 47.619 0.00 0.00 0.00 3.18
4193 6051 1.946768 CGCCAAGAAAACTGAACAGGA 59.053 47.619 6.76 0.00 0.00 3.86
4231 6089 5.105146 GCATCCTGTATGGTAGATCCCTTAG 60.105 48.000 0.00 0.00 35.99 2.18
4244 6102 6.327386 AGATCCCTTAGTTCTTTTATGCCA 57.673 37.500 0.00 0.00 0.00 4.92
4378 6236 1.421485 CGGCGCAACTCAGATGTTC 59.579 57.895 10.83 0.00 0.00 3.18
4398 6256 2.514160 TCTAGAGATACTGAGGGCCACA 59.486 50.000 6.18 4.43 0.00 4.17
4726 6587 2.551032 CCCCAACGAGGAACTAAACAAC 59.449 50.000 0.00 0.00 41.55 3.32
4749 6610 9.846248 CAACTAAAGTAATGGAATGAGAAAAGG 57.154 33.333 0.00 0.00 0.00 3.11
4792 6653 2.526304 TTCAGCTTAACACTGAGCGT 57.474 45.000 4.18 0.00 44.55 5.07
4815 6676 2.961536 TCTGGAAGGGTATTCAGGGA 57.038 50.000 0.00 0.00 0.00 4.20
5133 7101 9.512588 ACATAGTTTGTTCTCTTGAGATGAAAT 57.487 29.630 0.82 0.31 33.74 2.17
5134 7102 9.770503 CATAGTTTGTTCTCTTGAGATGAAATG 57.229 33.333 0.82 0.00 0.00 2.32
5140 7108 7.099764 TGTTCTCTTGAGATGAAATGAGGTAC 58.900 38.462 0.82 0.00 0.00 3.34
5147 7115 7.129457 TGAGATGAAATGAGGTACATTAGCT 57.871 36.000 0.00 0.00 46.90 3.32
5163 7131 7.264373 ACATTAGCTCAAGCATATTGGTTAC 57.736 36.000 4.59 0.00 45.16 2.50
5167 7135 4.878397 AGCTCAAGCATATTGGTTACAGTC 59.122 41.667 4.59 0.00 45.16 3.51
5226 7194 8.547967 TCACATAACTTACAAAGAGGATGTTC 57.452 34.615 0.00 0.00 31.35 3.18
5275 7243 7.649306 AGTTGATGTATCTTTTTGTCTTGCAAC 59.351 33.333 0.00 0.00 36.72 4.17
5281 7249 8.134895 TGTATCTTTTTGTCTTGCAACTTAAGG 58.865 33.333 7.53 0.00 36.72 2.69
5606 7650 6.582295 CAGTTAATCTGTGCAAAATAAAGCGT 59.418 34.615 0.00 0.00 39.17 5.07
5771 7818 1.087501 GGAAACTTTCCTAGGCTGCG 58.912 55.000 12.69 0.00 46.57 5.18
5777 7824 3.976701 TTCCTAGGCTGCGGCTTGC 62.977 63.158 18.85 5.76 46.70 4.01
6006 8055 5.841957 AGATGTGTCAAGCTTGAGTTTTT 57.158 34.783 29.13 13.18 37.98 1.94
6057 8106 6.835488 AGGCATCCAATCAAACTGTACAATAT 59.165 34.615 0.00 0.00 0.00 1.28
6103 8168 8.171196 CACAAGATCAATGTGTGTACTATTCAC 58.829 37.037 18.50 0.00 42.48 3.18
6133 8200 4.543590 TTTTTCCCTTGCTTTGTGTTCA 57.456 36.364 0.00 0.00 0.00 3.18
6148 8215 4.183865 TGTGTTCATGATCTCATTCGGTC 58.816 43.478 0.00 0.00 33.61 4.79
6199 8266 8.506168 AGTACACATGTTTCTTTTCAAAGAGA 57.494 30.769 0.00 0.00 45.01 3.10
6240 8308 1.369625 GGTTCATGACCTGTAAGCCG 58.630 55.000 0.00 0.00 45.55 5.52
6250 8318 4.933400 TGACCTGTAAGCCGAAAAATAGAC 59.067 41.667 0.00 0.00 0.00 2.59
6340 8413 7.012943 TCTGTTTTTACGAAAGAACATATGCG 58.987 34.615 1.58 0.00 0.00 4.73
6369 8442 2.419021 CCATGCCATAAAAGCCACTTGG 60.419 50.000 0.00 0.00 38.53 3.61
6387 8460 7.437748 CCACTTGGGAATTTACACATAAAACA 58.562 34.615 0.00 0.00 40.01 2.83
6395 8468 9.308318 GGAATTTACACATAAAACAACACAAGT 57.692 29.630 0.00 0.00 33.98 3.16
6399 8472 5.827666 ACACATAAAACAACACAAGTAGCC 58.172 37.500 0.00 0.00 0.00 3.93
6496 8572 4.022413 AGAGGCCTTTTAACCTGAAGAC 57.978 45.455 6.77 0.00 36.05 3.01
6499 8575 3.138468 AGGCCTTTTAACCTGAAGACTGT 59.862 43.478 0.00 0.00 34.07 3.55
6603 8679 3.350833 AGAGGCTTGGCAAGTATTTCAG 58.649 45.455 26.71 1.46 0.00 3.02
6642 8718 4.151798 CGCAAGTTTGAGCTTAGCTAAAC 58.848 43.478 20.78 20.78 39.88 2.01
6646 8722 5.948992 AGTTTGAGCTTAGCTAAACTTGG 57.051 39.130 23.16 0.00 39.88 3.61
6682 8758 5.221244 GCAGAACTATGACTTGGTTTGGTTT 60.221 40.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.959975 GCCACGGCGTTTTGCTCA 61.960 61.111 11.19 0.00 45.43 4.26
14 15 2.960129 GTAATCCTCGCGCCACGG 60.960 66.667 0.00 0.00 43.89 4.94
55 60 8.727910 GTCCTTAGGTTGTCGAATTTATTTTCT 58.272 33.333 0.00 0.00 0.00 2.52
63 68 4.019681 TCATGGTCCTTAGGTTGTCGAATT 60.020 41.667 0.00 0.00 0.00 2.17
110 120 4.884164 GCACTAATTAGCCTTGATTGGTCT 59.116 41.667 12.54 0.00 0.00 3.85
124 134 6.384258 TTTTGCACTGTTCAGCACTAATTA 57.616 33.333 0.00 0.00 41.05 1.40
133 143 3.181477 TGGTCCATTTTTGCACTGTTCAG 60.181 43.478 0.00 0.00 0.00 3.02
135 145 3.068024 TCTGGTCCATTTTTGCACTGTTC 59.932 43.478 0.00 0.00 0.00 3.18
285 330 9.454585 CGCAATATGAAGAATAAATTGTCACAT 57.545 29.630 0.00 0.00 31.65 3.21
286 331 8.672815 TCGCAATATGAAGAATAAATTGTCACA 58.327 29.630 0.00 0.00 31.65 3.58
287 332 8.947940 GTCGCAATATGAAGAATAAATTGTCAC 58.052 33.333 0.00 0.00 31.65 3.67
288 333 8.672815 TGTCGCAATATGAAGAATAAATTGTCA 58.327 29.630 0.00 0.00 31.65 3.58
289 334 9.669353 ATGTCGCAATATGAAGAATAAATTGTC 57.331 29.630 0.00 0.00 31.65 3.18
293 338 9.831737 GCTTATGTCGCAATATGAAGAATAAAT 57.168 29.630 0.00 0.00 0.00 1.40
294 339 9.056005 AGCTTATGTCGCAATATGAAGAATAAA 57.944 29.630 0.00 0.00 0.00 1.40
295 340 8.607441 AGCTTATGTCGCAATATGAAGAATAA 57.393 30.769 0.00 0.00 0.00 1.40
326 371 1.901464 GGCAAGGGGAAAAGCGACA 60.901 57.895 0.00 0.00 0.00 4.35
346 391 5.346281 GGAACTGGATAATAAATCGCTCTCG 59.654 44.000 0.00 0.00 0.00 4.04
511 1689 5.952347 GGTTGAGGGGTGAATATCTTCTTTT 59.048 40.000 0.00 0.00 32.29 2.27
515 1693 4.779993 AGGTTGAGGGGTGAATATCTTC 57.220 45.455 0.00 0.00 0.00 2.87
516 1694 5.015178 TCAAAGGTTGAGGGGTGAATATCTT 59.985 40.000 0.00 0.00 34.08 2.40
518 1696 4.640647 GTCAAAGGTTGAGGGGTGAATATC 59.359 45.833 0.00 0.00 41.01 1.63
521 1699 2.176798 TGTCAAAGGTTGAGGGGTGAAT 59.823 45.455 0.00 0.00 41.01 2.57
532 1710 2.363306 TGTGGAGCATGTCAAAGGTT 57.637 45.000 0.00 0.00 0.00 3.50
545 1723 3.610911 GGTCTAGGGTTCAAATGTGGAG 58.389 50.000 0.00 0.00 0.00 3.86
574 2290 3.749064 GCGACTCGGACAGGCTCA 61.749 66.667 0.00 0.00 0.00 4.26
581 2297 0.522180 TTCTGAAGAGCGACTCGGAC 59.478 55.000 0.00 0.00 35.36 4.79
615 2331 4.189580 CACATAGGGCGGGTGGGG 62.190 72.222 0.00 0.00 0.00 4.96
630 2349 0.517316 CTCAAGTACTTTGGCGCCAC 59.483 55.000 32.95 18.19 37.39 5.01
692 2411 3.045601 CCAGGTAGTGGTTCTTCACAG 57.954 52.381 0.00 0.00 42.17 3.66
748 2478 4.272504 CCGTGTCTGAAGCTTTCTTTACAA 59.727 41.667 0.00 0.00 31.48 2.41
749 2479 3.807622 CCGTGTCTGAAGCTTTCTTTACA 59.192 43.478 0.00 0.00 31.48 2.41
761 2491 0.460722 TCGTTGGTTCCGTGTCTGAA 59.539 50.000 0.00 0.00 0.00 3.02
795 2543 2.294449 AGGACAAAAGGGGAAGCTTC 57.706 50.000 18.54 18.54 0.00 3.86
861 2609 1.332686 GGTTCGTTGGTTGGTTGAGTC 59.667 52.381 0.00 0.00 0.00 3.36
1055 2829 3.744719 CGGCGTCGTCCCTCTTGA 61.745 66.667 0.00 0.00 0.00 3.02
1257 3053 2.115480 CGAGGCGGATAGAGGGGA 59.885 66.667 0.00 0.00 0.00 4.81
1262 3058 0.755698 AGAAAGGCGAGGCGGATAGA 60.756 55.000 0.00 0.00 0.00 1.98
1429 3228 4.999939 GCAGTTTTGCCGCCACCG 63.000 66.667 0.00 0.00 44.74 4.94
1467 3266 0.870393 AAACAGACATCACAGCAGCG 59.130 50.000 0.00 0.00 0.00 5.18
1468 3267 1.875514 TGAAACAGACATCACAGCAGC 59.124 47.619 0.00 0.00 0.00 5.25
1479 3290 6.429385 AGAGAACAGGATGAAATGAAACAGAC 59.571 38.462 0.00 0.00 39.69 3.51
1493 3304 3.784178 TGAACAGGAGAGAGAACAGGAT 58.216 45.455 0.00 0.00 0.00 3.24
1495 3306 3.118811 GGATGAACAGGAGAGAGAACAGG 60.119 52.174 0.00 0.00 0.00 4.00
1613 3424 2.017668 AACAGCCCCCACATCCACAA 62.018 55.000 0.00 0.00 0.00 3.33
1669 3480 6.369890 GCTAGATTTGAAGAACAGACACATGA 59.630 38.462 0.00 0.00 0.00 3.07
1673 3484 7.316640 TCTAGCTAGATTTGAAGAACAGACAC 58.683 38.462 19.72 0.00 0.00 3.67
1675 3486 7.487829 CACTCTAGCTAGATTTGAAGAACAGAC 59.512 40.741 23.48 0.00 0.00 3.51
1688 3499 7.667575 TCAAATTCCTTCACTCTAGCTAGAT 57.332 36.000 23.48 11.23 0.00 1.98
1725 3536 3.375299 ACTTGCTGGATCTAAATCGTTGC 59.625 43.478 0.00 0.00 32.24 4.17
1730 3541 7.031975 CCAAAAGAACTTGCTGGATCTAAATC 58.968 38.462 9.13 0.00 31.47 2.17
1743 3554 8.585018 AGAATATTTACACCCCAAAAGAACTTG 58.415 33.333 0.00 0.00 0.00 3.16
1745 3556 7.396339 GGAGAATATTTACACCCCAAAAGAACT 59.604 37.037 0.00 0.00 0.00 3.01
1789 3600 5.304101 ACATGTGCTTGTCCCAGAAAATTAA 59.696 36.000 0.00 0.00 0.00 1.40
1790 3601 4.832266 ACATGTGCTTGTCCCAGAAAATTA 59.168 37.500 0.00 0.00 0.00 1.40
1791 3602 3.642848 ACATGTGCTTGTCCCAGAAAATT 59.357 39.130 0.00 0.00 0.00 1.82
1792 3603 3.233507 ACATGTGCTTGTCCCAGAAAAT 58.766 40.909 0.00 0.00 0.00 1.82
1807 3618 4.380867 GGGGAAAGAAAGCATGTACATGTG 60.381 45.833 31.10 14.09 40.80 3.21
1865 3676 8.475639 GGTTCATCTCAAGGAAATACAGTACTA 58.524 37.037 0.00 0.00 0.00 1.82
1866 3677 7.331791 GGTTCATCTCAAGGAAATACAGTACT 58.668 38.462 0.00 0.00 0.00 2.73
1867 3678 6.255887 CGGTTCATCTCAAGGAAATACAGTAC 59.744 42.308 0.00 0.00 0.00 2.73
1868 3679 6.338146 CGGTTCATCTCAAGGAAATACAGTA 58.662 40.000 0.00 0.00 0.00 2.74
1870 3681 4.034510 GCGGTTCATCTCAAGGAAATACAG 59.965 45.833 0.00 0.00 0.00 2.74
1871 3682 3.938963 GCGGTTCATCTCAAGGAAATACA 59.061 43.478 0.00 0.00 0.00 2.29
1897 3714 9.516314 GACCACATTATTGGCTAGAAATTAAAC 57.484 33.333 0.00 0.00 40.77 2.01
1909 3728 5.581126 TCAAATCTGACCACATTATTGGC 57.419 39.130 0.00 0.00 40.77 4.52
2306 4127 5.767816 ATGAACTGACAACCAACTTAACC 57.232 39.130 0.00 0.00 0.00 2.85
2354 4175 6.090088 GCTTCTTCATAGCACTGATTATACGG 59.910 42.308 0.00 0.00 38.51 4.02
2389 4210 9.664332 ATGAATTCTACTGTAGCATATTCCATC 57.336 33.333 21.12 9.42 0.00 3.51
2401 4222 9.725019 AATCTTGAACACATGAATTCTACTGTA 57.275 29.630 7.05 0.00 0.00 2.74
2402 4223 8.627208 AATCTTGAACACATGAATTCTACTGT 57.373 30.769 7.05 5.18 0.00 3.55
2403 4224 8.724229 TGAATCTTGAACACATGAATTCTACTG 58.276 33.333 7.05 4.57 0.00 2.74
2404 4225 8.853077 TGAATCTTGAACACATGAATTCTACT 57.147 30.769 7.05 0.00 0.00 2.57
2405 4226 9.552114 CTTGAATCTTGAACACATGAATTCTAC 57.448 33.333 7.05 0.00 0.00 2.59
2465 4286 8.664798 CATCACGAAATCCTTCTAACATTGTAA 58.335 33.333 0.00 0.00 0.00 2.41
2476 4297 6.018669 GGAACAGTATCATCACGAAATCCTTC 60.019 42.308 0.00 0.00 0.00 3.46
2477 4298 5.817816 GGAACAGTATCATCACGAAATCCTT 59.182 40.000 0.00 0.00 0.00 3.36
2674 4503 4.095632 GCTCCTAACTTCTGCTTCCAATTC 59.904 45.833 0.00 0.00 0.00 2.17
2994 4849 4.253685 GCAACTACTAGAATTGACAGGCA 58.746 43.478 0.00 0.00 0.00 4.75
3088 4944 6.610075 AAGTACAAGTTTACGAATAGGGGA 57.390 37.500 0.00 0.00 0.00 4.81
3098 4954 8.623030 TCAATAACACCCAAAGTACAAGTTTAC 58.377 33.333 0.00 0.00 0.00 2.01
3105 4961 7.001674 AGAATGTCAATAACACCCAAAGTACA 58.998 34.615 0.00 0.00 41.75 2.90
3111 4967 3.509575 GCCAGAATGTCAATAACACCCAA 59.490 43.478 0.00 0.00 41.75 4.12
3112 4968 3.088532 GCCAGAATGTCAATAACACCCA 58.911 45.455 0.00 0.00 41.75 4.51
3113 4969 3.088532 TGCCAGAATGTCAATAACACCC 58.911 45.455 0.00 0.00 41.75 4.61
3114 4970 4.989279 ATGCCAGAATGTCAATAACACC 57.011 40.909 0.00 0.00 41.75 4.16
3118 4974 7.995289 ACGATTAAATGCCAGAATGTCAATAA 58.005 30.769 0.00 0.00 0.00 1.40
3119 4975 7.566760 ACGATTAAATGCCAGAATGTCAATA 57.433 32.000 0.00 0.00 0.00 1.90
3120 4976 6.455360 ACGATTAAATGCCAGAATGTCAAT 57.545 33.333 0.00 0.00 0.00 2.57
3121 4977 5.895636 ACGATTAAATGCCAGAATGTCAA 57.104 34.783 0.00 0.00 0.00 3.18
3122 4978 5.895636 AACGATTAAATGCCAGAATGTCA 57.104 34.783 0.00 0.00 0.00 3.58
3123 4979 7.587757 GTGATAACGATTAAATGCCAGAATGTC 59.412 37.037 0.00 0.00 0.00 3.06
3124 4980 7.066887 TGTGATAACGATTAAATGCCAGAATGT 59.933 33.333 0.00 0.00 0.00 2.71
3125 4981 7.416817 TGTGATAACGATTAAATGCCAGAATG 58.583 34.615 0.00 0.00 0.00 2.67
3126 4982 7.566760 TGTGATAACGATTAAATGCCAGAAT 57.433 32.000 0.00 0.00 0.00 2.40
3127 4983 6.993786 TGTGATAACGATTAAATGCCAGAA 57.006 33.333 0.00 0.00 0.00 3.02
3128 4984 6.993786 TTGTGATAACGATTAAATGCCAGA 57.006 33.333 0.00 0.00 0.00 3.86
3129 4985 9.385902 CTTATTGTGATAACGATTAAATGCCAG 57.614 33.333 0.00 0.00 0.00 4.85
3130 4986 7.860373 GCTTATTGTGATAACGATTAAATGCCA 59.140 33.333 0.00 0.00 0.00 4.92
3131 4987 8.076178 AGCTTATTGTGATAACGATTAAATGCC 58.924 33.333 0.00 0.00 0.00 4.40
3132 4988 8.895845 CAGCTTATTGTGATAACGATTAAATGC 58.104 33.333 0.00 0.00 0.00 3.56
3133 4989 9.935682 ACAGCTTATTGTGATAACGATTAAATG 57.064 29.630 0.00 0.00 0.00 2.32
3292 5149 6.509656 ACGTAAGAATGTTGTCTGTTCACTA 58.490 36.000 0.00 0.00 43.62 2.74
3329 5186 6.332630 ACAATTTCCTGAAAACTGTGTGAAG 58.667 36.000 8.90 0.00 32.60 3.02
3433 5290 3.118334 TCCCCGTCAACTGTTCTGTTTAA 60.118 43.478 0.00 0.00 0.00 1.52
3694 5551 4.500837 CGAAGAGTCGGTCTCATTAATGTG 59.499 45.833 14.97 12.69 44.98 3.21
3984 5841 2.816689 CATGCCACACCTTGCATAATG 58.183 47.619 0.00 0.00 45.98 1.90
3999 5856 5.289083 TCCATAAAAATTTAGGGCATGCC 57.711 39.130 29.47 29.47 42.61 4.40
4039 5896 8.352752 TGCGACTATCATAACATTTTACTCTG 57.647 34.615 0.00 0.00 0.00 3.35
4040 5897 8.942338 TTGCGACTATCATAACATTTTACTCT 57.058 30.769 0.00 0.00 0.00 3.24
4041 5898 9.638300 CTTTGCGACTATCATAACATTTTACTC 57.362 33.333 0.00 0.00 0.00 2.59
4042 5899 9.378551 TCTTTGCGACTATCATAACATTTTACT 57.621 29.630 0.00 0.00 0.00 2.24
4043 5900 9.422196 GTCTTTGCGACTATCATAACATTTTAC 57.578 33.333 0.00 0.00 39.61 2.01
4044 5901 9.157104 TGTCTTTGCGACTATCATAACATTTTA 57.843 29.630 0.00 0.00 43.25 1.52
4045 5902 8.039603 TGTCTTTGCGACTATCATAACATTTT 57.960 30.769 0.00 0.00 43.25 1.82
4101 5958 7.774157 AGAACATGATATGAGAAACAGAGCATT 59.226 33.333 0.00 0.00 42.87 3.56
4132 5989 5.177326 GTTGAAGCCAAATATTGAATGCCA 58.823 37.500 0.00 0.00 33.49 4.92
4151 6008 6.403200 GGCGAGCAGAAAGTTATTATTGTTGA 60.403 38.462 0.00 0.00 0.00 3.18
4161 6018 2.831685 TCTTGGCGAGCAGAAAGTTA 57.168 45.000 0.00 0.00 0.00 2.24
4166 6023 1.603802 CAGTTTTCTTGGCGAGCAGAA 59.396 47.619 0.00 0.00 0.00 3.02
4167 6024 1.202639 TCAGTTTTCTTGGCGAGCAGA 60.203 47.619 0.00 0.00 0.00 4.26
4168 6025 1.229428 TCAGTTTTCTTGGCGAGCAG 58.771 50.000 0.00 0.00 0.00 4.24
4169 6026 1.333619 GTTCAGTTTTCTTGGCGAGCA 59.666 47.619 0.00 0.00 0.00 4.26
4170 6027 1.333619 TGTTCAGTTTTCTTGGCGAGC 59.666 47.619 0.00 0.00 0.00 5.03
4171 6028 2.031682 CCTGTTCAGTTTTCTTGGCGAG 60.032 50.000 0.00 0.00 0.00 5.03
4172 6029 1.946768 CCTGTTCAGTTTTCTTGGCGA 59.053 47.619 0.00 0.00 0.00 5.54
4231 6089 5.954335 AGTAAGTGCATGGCATAAAAGAAC 58.046 37.500 0.00 0.00 41.91 3.01
4244 6102 4.262164 CCTGAAGCCAAAAAGTAAGTGCAT 60.262 41.667 0.00 0.00 0.00 3.96
4378 6236 2.625790 GTGTGGCCCTCAGTATCTCTAG 59.374 54.545 0.00 0.00 0.00 2.43
4398 6256 5.360714 TCTTCTGCAAATTCTTGGAAACTGT 59.639 36.000 0.00 0.00 31.84 3.55
4500 6358 9.979270 GCACATTAATCAGATATAGCACAATAC 57.021 33.333 0.00 0.00 0.00 1.89
4521 6380 5.009610 CACCCGGCTAAAATAAATAGCACAT 59.990 40.000 0.00 0.00 46.01 3.21
4726 6587 8.286191 AGCCTTTTCTCATTCCATTACTTTAG 57.714 34.615 0.00 0.00 0.00 1.85
4792 6653 3.459598 CCCTGAATACCCTTCCAGAATCA 59.540 47.826 0.00 0.00 0.00 2.57
4815 6676 8.997323 CAAAATATATCTTCTCTTCGCTCCAAT 58.003 33.333 0.00 0.00 0.00 3.16
5045 7012 8.905850 TGATTATTGAAGTCGTACACAGGTATA 58.094 33.333 0.00 0.00 0.00 1.47
5047 7014 7.160547 TGATTATTGAAGTCGTACACAGGTA 57.839 36.000 0.00 0.00 0.00 3.08
5133 7101 4.760530 ATGCTTGAGCTAATGTACCTCA 57.239 40.909 4.44 0.00 42.66 3.86
5134 7102 6.148480 CCAATATGCTTGAGCTAATGTACCTC 59.852 42.308 4.44 0.00 42.66 3.85
5140 7108 7.012704 ACTGTAACCAATATGCTTGAGCTAATG 59.987 37.037 4.44 0.00 42.66 1.90
5147 7115 4.629634 CACGACTGTAACCAATATGCTTGA 59.370 41.667 0.00 0.00 0.00 3.02
5163 7131 2.842208 TGTTTTTGCTTCCACGACTG 57.158 45.000 0.00 0.00 0.00 3.51
5167 7135 5.519722 AGTTCTATTGTTTTTGCTTCCACG 58.480 37.500 0.00 0.00 0.00 4.94
5606 7650 7.695480 TGCTTTATGTAAACTTTCATAGGCA 57.305 32.000 11.13 11.13 36.21 4.75
5762 7809 0.948141 GATAGCAAGCCGCAGCCTAG 60.948 60.000 4.42 0.00 46.13 3.02
5763 7810 1.069765 GATAGCAAGCCGCAGCCTA 59.930 57.895 4.42 0.00 46.13 3.93
5764 7811 2.203126 GATAGCAAGCCGCAGCCT 60.203 61.111 4.42 0.00 46.13 4.58
6006 8055 6.545666 TCTTTCAGTACAATTTTGCTCCAGAA 59.454 34.615 0.00 0.00 0.00 3.02
6018 8067 4.922206 TGGATGCCTTCTTTCAGTACAAT 58.078 39.130 0.00 0.00 0.00 2.71
6117 8183 3.508793 AGATCATGAACACAAAGCAAGGG 59.491 43.478 0.00 0.00 0.00 3.95
6133 8200 6.462207 CCTCTACTTTGACCGAATGAGATCAT 60.462 42.308 0.00 0.00 38.41 2.45
6240 8308 9.935682 TTTATCATTCTGCATCGTCTATTTTTC 57.064 29.630 0.00 0.00 0.00 2.29
6250 8318 7.420002 TCAAATCCTTTTATCATTCTGCATCG 58.580 34.615 0.00 0.00 0.00 3.84
6340 8413 4.037565 GGCTTTTATGGCATGGGTAGTAAC 59.962 45.833 10.98 0.00 0.00 2.50
6369 8442 9.308318 ACTTGTGTTGTTTTATGTGTAAATTCC 57.692 29.630 0.00 0.00 30.34 3.01
6387 8460 1.302511 CGCCCTGGCTACTTGTGTT 60.303 57.895 6.60 0.00 39.32 3.32
6395 8468 2.046314 GTTGAAGCGCCCTGGCTA 60.046 61.111 2.29 0.00 43.93 3.93
6399 8472 0.466189 ATATGGGTTGAAGCGCCCTG 60.466 55.000 2.29 0.00 45.06 4.45
6463 8539 5.813513 AAAAGGCCTCTTTGATTTGTGAT 57.186 34.783 5.23 0.00 41.92 3.06
6481 8557 6.984474 TGTAGACACAGTCTTCAGGTTAAAAG 59.016 38.462 4.85 0.00 40.28 2.27
6550 8626 1.066573 CAAGCCATCCGACTCAAGACT 60.067 52.381 0.00 0.00 0.00 3.24
6603 8679 2.139917 TGCGGTTATCACAATATCGCC 58.860 47.619 0.00 0.00 38.50 5.54
6642 8718 3.634397 TCTGCCCTCAATTCTACCAAG 57.366 47.619 0.00 0.00 0.00 3.61
6646 8722 5.755861 GTCATAGTTCTGCCCTCAATTCTAC 59.244 44.000 0.00 0.00 0.00 2.59
6682 8758 5.247110 AGCTCTAAAGAATCTGACAGGTCAA 59.753 40.000 1.81 0.00 39.39 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.