Multiple sequence alignment - TraesCS1D01G304000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G304000 chr1D 100.000 6044 0 0 1 6044 401712270 401706227 0.000000e+00 11162.0
1 TraesCS1D01G304000 chr1D 88.498 852 83 7 1379 2228 402129349 402128511 0.000000e+00 1016.0
2 TraesCS1D01G304000 chr1D 85.075 603 75 13 2521 3119 402127182 402126591 8.670000e-168 601.0
3 TraesCS1D01G304000 chr1D 78.228 666 103 30 4160 4818 402125898 402125268 7.350000e-104 388.0
4 TraesCS1D01G304000 chr1D 85.801 331 39 4 2237 2567 402127531 402127209 1.610000e-90 344.0
5 TraesCS1D01G304000 chr1D 95.652 92 4 0 4000 4091 92250932 92250841 1.360000e-31 148.0
6 TraesCS1D01G304000 chr1D 93.478 92 6 0 4000 4091 477502604 477502695 2.940000e-28 137.0
7 TraesCS1D01G304000 chr1D 85.897 78 10 1 3510 3587 19326516 19326592 1.400000e-11 82.4
8 TraesCS1D01G304000 chr1D 100.000 33 0 0 3629 3661 492997337 492997305 1.820000e-05 62.1
9 TraesCS1D01G304000 chr1A 96.337 2348 76 8 1119 3459 497541846 497539502 0.000000e+00 3851.0
10 TraesCS1D01G304000 chr1A 89.894 1326 76 25 4091 5386 497539164 497537867 0.000000e+00 1653.0
11 TraesCS1D01G304000 chr1A 91.883 1195 77 7 1 1180 497543032 497541843 0.000000e+00 1652.0
12 TraesCS1D01G304000 chr1A 88.159 853 84 9 1379 2228 497621975 497621137 0.000000e+00 1000.0
13 TraesCS1D01G304000 chr1A 84.934 604 75 11 2521 3119 497618962 497618370 1.120000e-166 597.0
14 TraesCS1D01G304000 chr1A 92.330 339 17 6 3662 3996 497539504 497539171 1.970000e-129 473.0
15 TraesCS1D01G304000 chr1A 77.470 759 127 33 4097 4847 497617736 497617014 1.210000e-111 414.0
16 TraesCS1D01G304000 chr1A 85.801 331 39 4 2237 2567 497619311 497618989 1.610000e-90 344.0
17 TraesCS1D01G304000 chr1A 82.424 165 14 9 3510 3663 160595504 160595664 4.920000e-26 130.0
18 TraesCS1D01G304000 chr1B 96.249 2186 67 10 1285 3459 539577680 539575499 0.000000e+00 3568.0
19 TraesCS1D01G304000 chr1B 88.380 852 82 9 1380 2228 539661307 539660470 0.000000e+00 1009.0
20 TraesCS1D01G304000 chr1B 92.578 512 34 3 4092 4600 539575176 539574666 0.000000e+00 732.0
21 TraesCS1D01G304000 chr1B 85.240 603 70 11 2521 3119 539659141 539658554 2.410000e-168 603.0
22 TraesCS1D01G304000 chr1B 89.066 439 29 12 4923 5353 539573768 539573341 1.490000e-145 527.0
23 TraesCS1D01G304000 chr1B 88.988 336 18 8 3662 3996 539575501 539575184 1.220000e-106 398.0
24 TraesCS1D01G304000 chr1B 77.698 695 116 25 4160 4847 539657854 539657192 7.350000e-104 388.0
25 TraesCS1D01G304000 chr1B 85.196 331 41 4 2237 2567 539659490 539659168 3.490000e-87 333.0
26 TraesCS1D01G304000 chr1B 87.251 251 25 4 1044 1287 539578088 539577838 4.610000e-71 279.0
27 TraesCS1D01G304000 chr1B 87.755 245 18 4 4680 4922 539574399 539574165 5.970000e-70 276.0
28 TraesCS1D01G304000 chr1B 91.566 83 5 2 3550 3630 6846522 6846604 4.950000e-21 113.0
29 TraesCS1D01G304000 chr1B 100.000 32 0 0 3630 3661 483890710 483890741 6.540000e-05 60.2
30 TraesCS1D01G304000 chr3D 94.943 613 25 6 5434 6044 32334241 32333633 0.000000e+00 955.0
31 TraesCS1D01G304000 chr3D 98.925 93 1 0 3999 4091 105425474 105425382 3.750000e-37 167.0
32 TraesCS1D01G304000 chr3D 97.015 67 2 0 3564 3630 45430224 45430158 4.950000e-21 113.0
33 TraesCS1D01G304000 chr3D 82.576 132 13 8 3508 3630 48284555 48284425 2.300000e-19 108.0
34 TraesCS1D01G304000 chr3D 93.651 63 4 0 3510 3572 500469807 500469745 1.790000e-15 95.3
35 TraesCS1D01G304000 chr3D 92.308 65 5 0 3508 3572 416925983 416926047 6.450000e-15 93.5
36 TraesCS1D01G304000 chr5D 94.146 615 29 7 5434 6044 556010807 556011418 0.000000e+00 929.0
37 TraesCS1D01G304000 chr5D 88.567 621 54 12 5434 6044 14106934 14107547 0.000000e+00 737.0
38 TraesCS1D01G304000 chr5D 93.833 454 23 4 5433 5884 407772216 407771766 0.000000e+00 678.0
39 TraesCS1D01G304000 chr5D 92.564 390 24 5 5658 6044 313776872 313777259 6.840000e-154 555.0
40 TraesCS1D01G304000 chr2D 86.030 859 94 15 1380 2229 83816106 83816947 0.000000e+00 898.0
41 TraesCS1D01G304000 chr2D 84.318 880 111 15 2234 3107 83817504 83818362 0.000000e+00 835.0
42 TraesCS1D01G304000 chr2D 77.504 649 102 26 4123 4758 83818962 83819579 3.470000e-92 350.0
43 TraesCS1D01G304000 chr2D 93.396 106 4 3 3986 4091 390711793 390711691 2.920000e-33 154.0
44 TraesCS1D01G304000 chr2D 95.652 92 4 0 4000 4091 644413315 644413224 1.360000e-31 148.0
45 TraesCS1D01G304000 chr2D 87.736 106 9 4 3455 3557 602742793 602742689 2.960000e-23 121.0
46 TraesCS1D01G304000 chr2D 87.736 106 9 4 3455 3557 602753611 602753507 2.960000e-23 121.0
47 TraesCS1D01G304000 chr2D 95.833 72 3 0 3565 3636 599953547 599953476 3.830000e-22 117.0
48 TraesCS1D01G304000 chr2D 98.182 55 0 1 3455 3509 381339370 381339317 1.790000e-15 95.3
49 TraesCS1D01G304000 chr2D 87.671 73 4 3 3455 3523 490617633 490617704 5.020000e-11 80.5
50 TraesCS1D01G304000 chr2A 86.030 859 94 15 1380 2229 84545907 84546748 0.000000e+00 898.0
51 TraesCS1D01G304000 chr2A 83.618 879 119 14 2234 3107 84547308 84548166 0.000000e+00 802.0
52 TraesCS1D01G304000 chr2A 78.369 601 92 27 4123 4717 84548767 84549335 7.450000e-94 355.0
53 TraesCS1D01G304000 chr2A 94.845 97 4 1 3995 4091 542664697 542664602 3.770000e-32 150.0
54 TraesCS1D01G304000 chr2B 84.738 878 111 11 2234 3107 135684641 135685499 0.000000e+00 857.0
55 TraesCS1D01G304000 chr2B 84.758 866 99 17 1380 2229 135683239 135684087 0.000000e+00 837.0
56 TraesCS1D01G304000 chr2B 79.916 478 73 14 4123 4595 135686066 135686525 4.520000e-86 329.0
57 TraesCS1D01G304000 chr2B 96.296 54 1 1 3455 3508 556438024 556437972 3.000000e-13 87.9
58 TraesCS1D01G304000 chr2B 100.000 33 0 0 3629 3661 5128892 5128924 1.820000e-05 62.1
59 TraesCS1D01G304000 chr7B 87.701 748 71 8 1380 2116 722941603 722940866 0.000000e+00 852.0
60 TraesCS1D01G304000 chr7B 93.878 98 6 0 4000 4097 44606880 44606783 1.360000e-31 148.0
61 TraesCS1D01G304000 chr7B 94.872 39 2 0 3626 3664 67840024 67839986 1.820000e-05 62.1
62 TraesCS1D01G304000 chr4B 87.550 747 73 7 1380 2116 360709638 360708902 0.000000e+00 846.0
63 TraesCS1D01G304000 chr4B 89.247 93 9 1 4000 4091 558137413 558137321 1.380000e-21 115.0
64 TraesCS1D01G304000 chr7D 88.283 623 53 18 5431 6043 16162177 16162789 0.000000e+00 728.0
65 TraesCS1D01G304000 chr7D 93.172 454 25 4 5434 5884 575781562 575781112 0.000000e+00 662.0
66 TraesCS1D01G304000 chr7D 96.774 93 2 1 4000 4091 188366096 188366004 2.920000e-33 154.0
67 TraesCS1D01G304000 chr7D 95.833 72 3 0 3565 3636 154601238 154601167 3.830000e-22 117.0
68 TraesCS1D01G304000 chr7D 89.773 88 7 2 3546 3631 9236338 9236251 1.780000e-20 111.0
69 TraesCS1D01G304000 chr7D 96.296 54 1 1 3455 3508 10763593 10763541 3.000000e-13 87.9
70 TraesCS1D01G304000 chr7D 94.545 55 2 1 3455 3509 151409396 151409343 3.880000e-12 84.2
71 TraesCS1D01G304000 chr7D 97.143 35 1 0 3629 3663 151409151 151409117 6.540000e-05 60.2
72 TraesCS1D01G304000 chr6D 88.000 625 44 13 5434 6029 301473593 301474215 0.000000e+00 710.0
73 TraesCS1D01G304000 chr6D 87.889 611 54 16 5434 6034 199938563 199937963 0.000000e+00 701.0
74 TraesCS1D01G304000 chr6D 87.500 624 45 20 5434 6029 306038143 306038761 0.000000e+00 689.0
75 TraesCS1D01G304000 chr6D 96.341 82 2 1 4010 4091 119277904 119277824 3.800000e-27 134.0
76 TraesCS1D01G304000 chr6D 92.063 63 5 0 3510 3572 1367141 1367203 8.340000e-14 89.8
77 TraesCS1D01G304000 chr6D 92.063 63 5 0 3510 3572 10297476 10297414 8.340000e-14 89.8
78 TraesCS1D01G304000 chrUn 93.603 469 24 6 5434 5899 21383073 21382608 0.000000e+00 695.0
79 TraesCS1D01G304000 chrUn 93.162 468 27 5 5434 5899 21393432 21392968 0.000000e+00 682.0
80 TraesCS1D01G304000 chr4A 84.727 622 70 17 5432 6044 516446379 516446984 3.120000e-167 599.0
81 TraesCS1D01G304000 chr4A 97.826 92 2 0 4000 4091 627601721 627601812 6.270000e-35 159.0
82 TraesCS1D01G304000 chr4A 87.273 110 8 2 3565 3669 632023784 632023676 2.960000e-23 121.0
83 TraesCS1D01G304000 chr4A 93.750 48 3 0 3525 3572 632023809 632023762 8.400000e-09 73.1
84 TraesCS1D01G304000 chr5A 95.918 98 3 1 3994 4091 651571638 651571734 2.260000e-34 158.0
85 TraesCS1D01G304000 chr4D 96.739 92 3 0 4000 4091 78012419 78012510 2.920000e-33 154.0
86 TraesCS1D01G304000 chr4D 93.478 92 6 0 4000 4091 414048986 414048895 2.940000e-28 137.0
87 TraesCS1D01G304000 chr4D 92.063 63 5 0 3510 3572 509164691 509164753 8.340000e-14 89.8
88 TraesCS1D01G304000 chr4D 90.000 60 5 1 3531 3590 481899625 481899567 6.500000e-10 76.8
89 TraesCS1D01G304000 chr6A 94.845 97 4 1 3565 3661 22986488 22986583 3.770000e-32 150.0
90 TraesCS1D01G304000 chr7A 81.622 185 21 9 3455 3630 726891221 726891401 2.270000e-29 141.0
91 TraesCS1D01G304000 chr7A 86.567 67 7 2 3525 3589 30576929 30576995 8.400000e-09 73.1
92 TraesCS1D01G304000 chr7A 87.302 63 8 0 3510 3572 643653012 643653074 8.400000e-09 73.1
93 TraesCS1D01G304000 chr3A 94.545 55 2 1 3455 3509 24927883 24927936 3.880000e-12 84.2
94 TraesCS1D01G304000 chr3B 82.500 80 13 1 3510 3589 10295484 10295562 1.090000e-07 69.4
95 TraesCS1D01G304000 chr6B 100.000 33 0 0 3629 3661 84145171 84145139 1.820000e-05 62.1
96 TraesCS1D01G304000 chr6B 97.222 36 1 0 3629 3664 716855610 716855575 1.820000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G304000 chr1D 401706227 401712270 6043 True 11162.000000 11162 100.000000 1 6044 1 chr1D.!!$R2 6043
1 TraesCS1D01G304000 chr1D 402125268 402129349 4081 True 587.250000 1016 84.400500 1379 4818 4 chr1D.!!$R4 3439
2 TraesCS1D01G304000 chr1A 497537867 497543032 5165 True 1907.250000 3851 92.611000 1 5386 4 chr1A.!!$R1 5385
3 TraesCS1D01G304000 chr1A 497617014 497621975 4961 True 588.750000 1000 84.091000 1379 4847 4 chr1A.!!$R2 3468
4 TraesCS1D01G304000 chr1B 539573341 539578088 4747 True 963.333333 3568 90.314500 1044 5353 6 chr1B.!!$R1 4309
5 TraesCS1D01G304000 chr1B 539657192 539661307 4115 True 583.250000 1009 84.128500 1380 4847 4 chr1B.!!$R2 3467
6 TraesCS1D01G304000 chr3D 32333633 32334241 608 True 955.000000 955 94.943000 5434 6044 1 chr3D.!!$R1 610
7 TraesCS1D01G304000 chr5D 556010807 556011418 611 False 929.000000 929 94.146000 5434 6044 1 chr5D.!!$F3 610
8 TraesCS1D01G304000 chr5D 14106934 14107547 613 False 737.000000 737 88.567000 5434 6044 1 chr5D.!!$F1 610
9 TraesCS1D01G304000 chr2D 83816106 83819579 3473 False 694.333333 898 82.617333 1380 4758 3 chr2D.!!$F2 3378
10 TraesCS1D01G304000 chr2A 84545907 84549335 3428 False 685.000000 898 82.672333 1380 4717 3 chr2A.!!$F1 3337
11 TraesCS1D01G304000 chr2B 135683239 135686525 3286 False 674.333333 857 83.137333 1380 4595 3 chr2B.!!$F2 3215
12 TraesCS1D01G304000 chr7B 722940866 722941603 737 True 852.000000 852 87.701000 1380 2116 1 chr7B.!!$R3 736
13 TraesCS1D01G304000 chr4B 360708902 360709638 736 True 846.000000 846 87.550000 1380 2116 1 chr4B.!!$R1 736
14 TraesCS1D01G304000 chr7D 16162177 16162789 612 False 728.000000 728 88.283000 5431 6043 1 chr7D.!!$F1 612
15 TraesCS1D01G304000 chr6D 301473593 301474215 622 False 710.000000 710 88.000000 5434 6029 1 chr6D.!!$F2 595
16 TraesCS1D01G304000 chr6D 199937963 199938563 600 True 701.000000 701 87.889000 5434 6034 1 chr6D.!!$R3 600
17 TraesCS1D01G304000 chr6D 306038143 306038761 618 False 689.000000 689 87.500000 5434 6029 1 chr6D.!!$F3 595
18 TraesCS1D01G304000 chr4A 516446379 516446984 605 False 599.000000 599 84.727000 5432 6044 1 chr4A.!!$F1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 701 0.036164 CAACCGTGGGGAACTCATGA 59.964 55.0 0.00 0.0 36.97 3.07 F
1912 2182 0.111061 AAGAGTGCAATCCAGTGGCA 59.889 50.0 11.14 0.0 34.70 4.92 F
3537 5815 0.323178 TAGATCCTATCCCGACGGCC 60.323 60.0 8.86 0.0 0.00 6.13 F
3580 5858 0.027586 GTTGCCGACGGATATGTTGC 59.972 55.0 20.50 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 2490 1.135915 AGCACGATGTCACTCTCCATC 59.864 52.381 0.00 0.0 35.26 3.51 R
3561 5839 0.027586 GCAACATATCCGTCGGCAAC 59.972 55.000 6.34 0.0 0.00 4.17 R
4640 7030 0.035056 CATCCCCCAGTCCTCACAAC 60.035 60.000 0.00 0.0 0.00 3.32 R
5400 8415 0.108138 GTCACTAGGCAGCGGAATGT 60.108 55.000 0.00 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.779755 TCGGTACAATGTCATGGCTT 57.220 45.000 0.00 0.00 0.00 4.35
67 68 4.880759 TGATTACATTGGTGGTGCTTTTG 58.119 39.130 0.00 0.00 0.00 2.44
103 104 0.690762 TTTCCCTCTTTCTCCCCGTG 59.309 55.000 0.00 0.00 0.00 4.94
120 134 4.533222 CCCGTGAATGTGTTGTTTTACTC 58.467 43.478 0.00 0.00 0.00 2.59
180 194 7.701539 TCATTTGAACCTATACTTGCAACAT 57.298 32.000 0.00 0.00 0.00 2.71
213 227 7.249715 AGCACTATAGGATGGATACTAACCTT 58.750 38.462 4.43 0.00 36.09 3.50
236 250 0.322726 CACTCATGGCATGGTGACCA 60.323 55.000 29.53 6.84 41.06 4.02
238 252 1.378911 TCATGGCATGGTGACCAGC 60.379 57.895 26.15 13.47 39.88 4.85
242 256 3.807538 GCATGGTGACCAGCGCTG 61.808 66.667 30.52 30.52 36.75 5.18
243 257 2.359107 CATGGTGACCAGCGCTGT 60.359 61.111 33.75 22.41 36.75 4.40
284 298 1.270678 GCTGTAAAACCCTCACCGTCT 60.271 52.381 0.00 0.00 0.00 4.18
302 317 0.392595 CTCCCGAAACCCTAGCCAAC 60.393 60.000 0.00 0.00 0.00 3.77
316 331 3.443045 CAACCTGGCCGTGCATCC 61.443 66.667 0.00 0.00 0.00 3.51
327 342 1.212751 GTGCATCCGTTTTCCCAGC 59.787 57.895 0.00 0.00 0.00 4.85
340 355 0.395862 TCCCAGCCGTCTTCCTCTAG 60.396 60.000 0.00 0.00 0.00 2.43
343 358 0.741915 CAGCCGTCTTCCTCTAGGTC 59.258 60.000 0.00 0.00 36.34 3.85
404 419 2.032071 CCCCGTGCTTCCTTTCGT 59.968 61.111 0.00 0.00 0.00 3.85
414 429 5.408356 GTGCTTCCTTTCGTAGATCTTGTA 58.592 41.667 0.00 0.00 35.04 2.41
491 506 2.625823 CCACCTGCGCCATTTTCGT 61.626 57.895 4.18 0.00 0.00 3.85
542 557 3.015145 GGCCCCAGGTTGCCTCTA 61.015 66.667 9.58 0.00 44.46 2.43
597 612 1.753078 CTCGTCGTCATCCTCCCCA 60.753 63.158 0.00 0.00 0.00 4.96
601 616 1.987855 TCGTCATCCTCCCCACCAC 60.988 63.158 0.00 0.00 0.00 4.16
641 656 2.032528 CGACACTGCCACCACCAT 59.967 61.111 0.00 0.00 0.00 3.55
686 701 0.036164 CAACCGTGGGGAACTCATGA 59.964 55.000 0.00 0.00 36.97 3.07
695 710 2.978278 GGGGAACTCATGATGGAGATCT 59.022 50.000 0.00 0.00 37.03 2.75
696 711 3.244491 GGGGAACTCATGATGGAGATCTG 60.244 52.174 0.00 0.00 37.03 2.90
697 712 3.401182 GGAACTCATGATGGAGATCTGC 58.599 50.000 7.39 7.39 37.03 4.26
701 716 3.139850 CTCATGATGGAGATCTGCCAAC 58.860 50.000 12.15 11.96 39.21 3.77
717 732 1.282817 CAACGTGAACTTGGTCGTCA 58.717 50.000 0.00 0.00 35.49 4.35
752 767 1.717032 TAACACTGCTGAGGAGGTGT 58.283 50.000 5.82 4.77 43.51 4.16
754 769 1.080230 CACTGCTGAGGAGGTGTCG 60.080 63.158 5.82 0.00 0.00 4.35
783 798 3.211564 CTTTGGGCCAACACCGCAG 62.212 63.158 20.79 8.86 0.00 5.18
789 804 3.215568 CCAACACCGCAGCCACAA 61.216 61.111 0.00 0.00 0.00 3.33
815 830 2.364186 GCCCCTCCCACCATTTGG 60.364 66.667 0.00 0.00 46.47 3.28
827 842 2.162208 CACCATTTGGATTGTCTCACGG 59.838 50.000 3.01 0.00 38.94 4.94
829 844 1.086696 ATTTGGATTGTCTCACGGCG 58.913 50.000 4.80 4.80 0.00 6.46
830 845 1.573829 TTTGGATTGTCTCACGGCGC 61.574 55.000 6.90 0.00 0.00 6.53
884 899 4.093011 AGTTGTACTCTGAGCTCTTGGAT 58.907 43.478 16.19 0.00 0.00 3.41
885 900 4.530161 AGTTGTACTCTGAGCTCTTGGATT 59.470 41.667 16.19 7.49 0.00 3.01
902 917 5.178096 TGGATTCAGAGTTGATAGCCAAA 57.822 39.130 0.00 0.00 36.36 3.28
909 924 4.269603 CAGAGTTGATAGCCAAACTCATCG 59.730 45.833 15.64 2.94 36.38 3.84
935 950 2.593725 CCGGACCTCCTCGCGATA 60.594 66.667 10.36 0.00 0.00 2.92
937 952 1.731433 CCGGACCTCCTCGCGATAAA 61.731 60.000 10.36 0.00 0.00 1.40
949 964 3.817238 TCGCGATAAACCAAGCTTTTTC 58.183 40.909 3.71 0.00 0.00 2.29
956 971 1.170290 ACCAAGCTTTTTCGGGTCCG 61.170 55.000 0.00 2.52 41.35 4.79
977 992 1.684450 TGGAGACGAGCACACAGTAAA 59.316 47.619 0.00 0.00 0.00 2.01
1038 1053 6.203723 AGAGCAATCCATTATTTTACGAGCTC 59.796 38.462 2.73 2.73 42.70 4.09
1096 1111 0.322456 GCCATGCAGTTGGTCCACTA 60.322 55.000 8.13 0.00 39.11 2.74
1113 1130 0.319211 CTACCAACGACAACGAGGCA 60.319 55.000 0.00 0.00 42.66 4.75
1131 1148 3.264845 GGCCCCTCCCACTTTCCA 61.265 66.667 0.00 0.00 0.00 3.53
1181 1261 1.084370 GGCTTGGATGACGACTTCGG 61.084 60.000 3.30 0.00 44.95 4.30
1261 1341 3.873952 GCTTGGACTAGTTCAATGCCTAG 59.126 47.826 17.07 9.61 37.32 3.02
1300 1540 8.268605 TGATGTAAATGTAGTAAGCATGGGTTA 58.731 33.333 0.00 0.00 0.00 2.85
1475 1715 3.392882 GGAAACATGCCAAGTTGAAAGG 58.607 45.455 3.87 0.00 0.00 3.11
1859 2126 4.224818 TCATACACAGTGTTCATCCATCCA 59.775 41.667 12.53 0.00 0.00 3.41
1912 2182 0.111061 AAGAGTGCAATCCAGTGGCA 59.889 50.000 11.14 0.00 34.70 4.92
2035 2308 2.159585 TGCCGCAAAACTTATCATGTCG 60.160 45.455 0.00 0.00 0.00 4.35
2122 2395 9.832445 TCCTTGATCCATTTATAAACAGTACTC 57.168 33.333 0.00 0.00 0.00 2.59
2214 2490 3.721035 TGATGATATGAGCTCACCAACG 58.279 45.455 20.97 0.00 0.00 4.10
2284 4387 2.158219 TCTTCCTTGTCTCAGGGGTACA 60.158 50.000 0.00 0.00 34.24 2.90
2287 4390 1.909302 CCTTGTCTCAGGGGTACACAT 59.091 52.381 0.00 0.00 0.00 3.21
2504 4607 2.822561 TCAGAAGAGGTAGCACAGACTG 59.177 50.000 0.00 0.00 0.00 3.51
2602 4778 3.270877 CGGACAAGCTTAAGTAATGCCT 58.729 45.455 0.00 0.00 0.00 4.75
2802 4979 3.291584 TGTTATTGTGGGCAGAAACACA 58.708 40.909 0.00 0.00 45.06 3.72
2967 5149 3.441163 TGCTACATACTTCTTAACGCGG 58.559 45.455 12.47 0.00 0.00 6.46
3276 5517 7.118723 AGATATGTAGGGAAAACTGATTGCAA 58.881 34.615 0.00 0.00 0.00 4.08
3463 5741 4.025401 GCAACGAGGCCAACGTGG 62.025 66.667 24.16 22.31 43.16 4.94
3484 5762 4.030452 GCAGCCGTTGGTCAGCAC 62.030 66.667 0.00 0.00 0.00 4.40
3485 5763 2.281070 CAGCCGTTGGTCAGCACT 60.281 61.111 0.00 0.00 0.00 4.40
3486 5764 1.893808 CAGCCGTTGGTCAGCACTT 60.894 57.895 0.00 0.00 0.00 3.16
3487 5765 1.893808 AGCCGTTGGTCAGCACTTG 60.894 57.895 0.00 0.00 0.00 3.16
3488 5766 1.891919 GCCGTTGGTCAGCACTTGA 60.892 57.895 0.00 0.00 0.00 3.02
3494 5772 3.414700 GTCAGCACTTGACGGCGG 61.415 66.667 13.24 0.00 46.13 6.13
3528 5806 2.853731 CCGTCGGCATAGATCCTATC 57.146 55.000 0.00 0.00 0.00 2.08
3529 5807 1.405821 CCGTCGGCATAGATCCTATCC 59.594 57.143 0.00 0.00 0.00 2.59
3530 5808 1.405821 CGTCGGCATAGATCCTATCCC 59.594 57.143 0.00 0.00 0.00 3.85
3531 5809 1.405821 GTCGGCATAGATCCTATCCCG 59.594 57.143 9.44 9.44 33.50 5.14
3532 5810 1.283905 TCGGCATAGATCCTATCCCGA 59.716 52.381 13.32 13.32 37.16 5.14
3533 5811 1.405821 CGGCATAGATCCTATCCCGAC 59.594 57.143 10.02 0.00 33.88 4.79
3534 5812 1.405821 GGCATAGATCCTATCCCGACG 59.594 57.143 0.00 0.00 0.00 5.12
3535 5813 1.405821 GCATAGATCCTATCCCGACGG 59.594 57.143 6.99 6.99 0.00 4.79
3536 5814 1.405821 CATAGATCCTATCCCGACGGC 59.594 57.143 8.86 0.00 0.00 5.68
3537 5815 0.323178 TAGATCCTATCCCGACGGCC 60.323 60.000 8.86 0.00 0.00 6.13
3538 5816 1.606889 GATCCTATCCCGACGGCCT 60.607 63.158 8.86 0.00 0.00 5.19
3539 5817 0.323178 GATCCTATCCCGACGGCCTA 60.323 60.000 8.86 0.74 0.00 3.93
3540 5818 0.611340 ATCCTATCCCGACGGCCTAC 60.611 60.000 8.86 0.00 0.00 3.18
3541 5819 2.273912 CCTATCCCGACGGCCTACC 61.274 68.421 8.86 0.00 0.00 3.18
3560 5838 2.960170 GGCTACGCCGACGGATAT 59.040 61.111 20.50 3.95 46.04 1.63
3561 5839 1.443872 GGCTACGCCGACGGATATG 60.444 63.158 20.50 6.18 46.04 1.78
3562 5840 1.285023 GCTACGCCGACGGATATGT 59.715 57.895 20.50 12.09 46.04 2.29
3563 5841 0.318445 GCTACGCCGACGGATATGTT 60.318 55.000 20.50 0.00 46.04 2.71
3564 5842 1.405461 CTACGCCGACGGATATGTTG 58.595 55.000 20.50 7.03 46.04 3.33
3565 5843 0.595567 TACGCCGACGGATATGTTGC 60.596 55.000 20.50 0.00 46.04 4.17
3566 5844 2.594962 CGCCGACGGATATGTTGCC 61.595 63.158 20.50 0.00 34.97 4.52
3573 5851 3.606886 GGATATGTTGCCGACGGAT 57.393 52.632 20.50 4.35 0.00 4.18
3574 5852 2.736144 GGATATGTTGCCGACGGATA 57.264 50.000 20.50 6.78 0.00 2.59
3575 5853 3.247006 GGATATGTTGCCGACGGATAT 57.753 47.619 20.50 11.71 0.00 1.63
3576 5854 2.930040 GGATATGTTGCCGACGGATATG 59.070 50.000 20.50 0.00 0.00 1.78
3577 5855 3.585862 GATATGTTGCCGACGGATATGT 58.414 45.455 20.50 0.00 0.00 2.29
3578 5856 2.325583 ATGTTGCCGACGGATATGTT 57.674 45.000 20.50 0.00 0.00 2.71
3579 5857 1.364721 TGTTGCCGACGGATATGTTG 58.635 50.000 20.50 0.00 0.00 3.33
3580 5858 0.027586 GTTGCCGACGGATATGTTGC 59.972 55.000 20.50 0.00 0.00 4.17
3581 5859 1.092921 TTGCCGACGGATATGTTGCC 61.093 55.000 20.50 0.00 0.00 4.52
3603 5881 4.894896 GCCCTATGCCAACGGGGG 62.895 72.222 4.11 0.00 39.27 5.40
3627 5905 4.865865 GCATAGGCCTGTCCTGAC 57.134 61.111 17.99 0.96 46.98 3.51
3628 5906 1.227380 GCATAGGCCTGTCCTGACG 60.227 63.158 17.99 0.00 46.98 4.35
3629 5907 1.443407 CATAGGCCTGTCCTGACGG 59.557 63.158 17.99 0.00 46.98 4.79
3648 5926 4.280494 CCGTCGGCATAGGGGTCG 62.280 72.222 0.00 0.00 37.19 4.79
3649 5927 3.214123 CGTCGGCATAGGGGTCGA 61.214 66.667 0.00 0.00 43.47 4.20
3651 5929 4.288234 TCGGCATAGGGGTCGATT 57.712 55.556 0.00 0.00 40.41 3.34
3652 5930 2.046938 TCGGCATAGGGGTCGATTC 58.953 57.895 0.00 0.00 40.41 2.52
3653 5931 1.004918 CGGCATAGGGGTCGATTCC 60.005 63.158 0.00 0.00 38.35 3.01
3654 5932 1.004918 GGCATAGGGGTCGATTCCG 60.005 63.158 0.00 0.00 37.07 4.30
3655 5933 1.004918 GCATAGGGGTCGATTCCGG 60.005 63.158 0.00 0.00 36.24 5.14
3656 5934 1.755393 GCATAGGGGTCGATTCCGGT 61.755 60.000 0.00 0.00 36.24 5.28
3657 5935 1.624336 CATAGGGGTCGATTCCGGTA 58.376 55.000 0.00 0.00 36.24 4.02
3658 5936 1.544691 CATAGGGGTCGATTCCGGTAG 59.455 57.143 0.00 0.00 36.24 3.18
3659 5937 0.552848 TAGGGGTCGATTCCGGTAGT 59.447 55.000 0.00 0.00 36.24 2.73
3660 5938 1.041447 AGGGGTCGATTCCGGTAGTG 61.041 60.000 0.00 0.00 36.24 2.74
3661 5939 1.227176 GGGTCGATTCCGGTAGTGC 60.227 63.158 0.00 0.00 36.24 4.40
3662 5940 1.514087 GGTCGATTCCGGTAGTGCA 59.486 57.895 0.00 0.00 36.24 4.57
3746 6025 9.933723 ATCAAAAGCTTAATAAGTGCATCTTTT 57.066 25.926 0.00 5.87 37.56 2.27
3942 6303 2.274542 TGAAGTGGCATTTCCCCTAGA 58.725 47.619 18.52 0.00 0.00 2.43
3996 6358 8.796475 AGTGTGTTTATTTTATGATGCACTTCT 58.204 29.630 0.00 0.00 30.50 2.85
3997 6359 9.410556 GTGTGTTTATTTTATGATGCACTTCTT 57.589 29.630 0.00 0.00 0.00 2.52
3999 6361 9.846248 GTGTTTATTTTATGATGCACTTCTTCT 57.154 29.630 0.00 0.00 0.00 2.85
4022 6384 4.817318 TTTTTGTGGCAAAGAGGAGTTT 57.183 36.364 0.00 0.00 0.00 2.66
4023 6385 4.817318 TTTTGTGGCAAAGAGGAGTTTT 57.183 36.364 0.00 0.00 0.00 2.43
4024 6386 5.923733 TTTTGTGGCAAAGAGGAGTTTTA 57.076 34.783 0.00 0.00 0.00 1.52
4025 6387 6.478512 TTTTGTGGCAAAGAGGAGTTTTAT 57.521 33.333 0.00 0.00 0.00 1.40
4026 6388 6.478512 TTTGTGGCAAAGAGGAGTTTTATT 57.521 33.333 0.00 0.00 0.00 1.40
4027 6389 5.705609 TGTGGCAAAGAGGAGTTTTATTC 57.294 39.130 0.00 0.00 0.00 1.75
4028 6390 4.522789 TGTGGCAAAGAGGAGTTTTATTCC 59.477 41.667 0.00 0.00 34.83 3.01
4029 6391 4.522789 GTGGCAAAGAGGAGTTTTATTCCA 59.477 41.667 0.00 0.00 37.18 3.53
4030 6392 5.010617 GTGGCAAAGAGGAGTTTTATTCCAA 59.989 40.000 0.00 0.00 37.18 3.53
4031 6393 5.600484 TGGCAAAGAGGAGTTTTATTCCAAA 59.400 36.000 0.00 0.00 37.18 3.28
4032 6394 6.098982 TGGCAAAGAGGAGTTTTATTCCAAAA 59.901 34.615 0.00 0.00 37.18 2.44
4033 6395 7.161404 GGCAAAGAGGAGTTTTATTCCAAAAT 58.839 34.615 0.00 0.00 37.18 1.82
4034 6396 7.661437 GGCAAAGAGGAGTTTTATTCCAAAATT 59.339 33.333 0.00 0.00 37.18 1.82
4035 6397 9.705290 GCAAAGAGGAGTTTTATTCCAAAATTA 57.295 29.630 0.00 0.00 37.18 1.40
4058 6420 9.950496 ATTATAGGATTACAATCTACTGGCAAG 57.050 33.333 2.19 0.00 35.73 4.01
4059 6421 5.957771 AGGATTACAATCTACTGGCAAGA 57.042 39.130 0.00 0.00 35.73 3.02
4060 6422 5.923204 AGGATTACAATCTACTGGCAAGAG 58.077 41.667 0.00 0.00 35.73 2.85
4061 6423 5.663106 AGGATTACAATCTACTGGCAAGAGA 59.337 40.000 0.00 0.88 35.73 3.10
4062 6424 6.328672 AGGATTACAATCTACTGGCAAGAGAT 59.671 38.462 0.00 5.24 35.73 2.75
4063 6425 6.648725 GGATTACAATCTACTGGCAAGAGATC 59.351 42.308 10.35 0.00 35.73 2.75
4064 6426 4.414337 ACAATCTACTGGCAAGAGATCC 57.586 45.455 10.35 0.00 0.00 3.36
4065 6427 4.036518 ACAATCTACTGGCAAGAGATCCT 58.963 43.478 10.35 0.00 0.00 3.24
4066 6428 4.100808 ACAATCTACTGGCAAGAGATCCTC 59.899 45.833 10.35 0.00 0.00 3.71
4067 6429 2.302260 TCTACTGGCAAGAGATCCTCG 58.698 52.381 0.00 0.00 35.36 4.63
4068 6430 2.092375 TCTACTGGCAAGAGATCCTCGA 60.092 50.000 0.00 0.00 35.36 4.04
4069 6431 1.786937 ACTGGCAAGAGATCCTCGAT 58.213 50.000 0.00 0.00 35.36 3.59
4070 6432 2.950781 ACTGGCAAGAGATCCTCGATA 58.049 47.619 0.00 0.00 35.36 2.92
4071 6433 2.625790 ACTGGCAAGAGATCCTCGATAC 59.374 50.000 0.00 0.00 35.36 2.24
4072 6434 2.625314 CTGGCAAGAGATCCTCGATACA 59.375 50.000 0.00 0.00 35.36 2.29
4073 6435 3.234353 TGGCAAGAGATCCTCGATACAT 58.766 45.455 0.00 0.00 35.36 2.29
4074 6436 3.006217 TGGCAAGAGATCCTCGATACATG 59.994 47.826 0.00 0.00 35.36 3.21
4075 6437 3.583806 GCAAGAGATCCTCGATACATGG 58.416 50.000 0.00 0.00 35.36 3.66
4076 6438 3.256879 GCAAGAGATCCTCGATACATGGA 59.743 47.826 0.00 0.00 35.36 3.41
4077 6439 4.617995 GCAAGAGATCCTCGATACATGGAG 60.618 50.000 0.00 0.00 35.36 3.86
4081 6443 1.674057 CCTCGATACATGGAGGGCC 59.326 63.158 11.38 0.00 45.67 5.80
4082 6444 0.833834 CCTCGATACATGGAGGGCCT 60.834 60.000 5.25 5.25 45.67 5.19
4083 6445 0.605589 CTCGATACATGGAGGGCCTC 59.394 60.000 25.80 25.80 34.31 4.70
4084 6446 0.188587 TCGATACATGGAGGGCCTCT 59.811 55.000 31.39 15.45 34.31 3.69
4085 6447 0.605589 CGATACATGGAGGGCCTCTC 59.394 60.000 31.39 21.65 41.71 3.20
4086 6448 1.825242 CGATACATGGAGGGCCTCTCT 60.825 57.143 31.39 16.96 42.10 3.10
4087 6449 1.622811 GATACATGGAGGGCCTCTCTG 59.377 57.143 31.39 27.55 42.10 3.35
4088 6450 0.636647 TACATGGAGGGCCTCTCTGA 59.363 55.000 31.39 14.45 42.10 3.27
4089 6451 0.252881 ACATGGAGGGCCTCTCTGAA 60.253 55.000 31.39 13.57 42.10 3.02
4397 6770 1.609501 CGGACCTCCAAGGGACTCA 60.610 63.158 0.00 0.00 40.58 3.41
4413 6786 4.941873 GGGACTCAACTCGGTATTTCAATT 59.058 41.667 0.00 0.00 0.00 2.32
4416 6789 6.592607 GGACTCAACTCGGTATTTCAATTGTA 59.407 38.462 5.13 0.00 0.00 2.41
4420 6793 7.335627 TCAACTCGGTATTTCAATTGTATCCT 58.664 34.615 5.13 0.00 0.00 3.24
4421 6794 8.479689 TCAACTCGGTATTTCAATTGTATCCTA 58.520 33.333 5.13 0.00 0.00 2.94
4422 6795 9.104965 CAACTCGGTATTTCAATTGTATCCTAA 57.895 33.333 5.13 0.00 0.00 2.69
4532 6922 4.162690 GCGCGGATCCTGGAACCT 62.163 66.667 19.40 0.00 0.00 3.50
4632 7022 1.167033 ACTTTGGGTTCATTCCCCCT 58.833 50.000 0.00 0.00 46.48 4.79
4636 7026 2.295269 TGGGTTCATTCCCCCTCATA 57.705 50.000 0.00 0.00 46.48 2.15
4637 7027 2.800656 TGGGTTCATTCCCCCTCATAT 58.199 47.619 0.00 0.00 46.48 1.78
4639 7029 2.716424 GGGTTCATTCCCCCTCATATGA 59.284 50.000 5.07 5.07 41.54 2.15
4640 7030 3.245052 GGGTTCATTCCCCCTCATATGAG 60.245 52.174 23.53 23.53 41.54 2.90
4641 7031 3.395941 GGTTCATTCCCCCTCATATGAGT 59.604 47.826 27.03 8.48 40.48 3.41
4644 7034 4.047166 TCATTCCCCCTCATATGAGTTGT 58.953 43.478 27.03 7.89 40.48 3.32
4645 7035 3.931907 TTCCCCCTCATATGAGTTGTG 57.068 47.619 27.03 14.11 40.48 3.33
4646 7036 3.129262 TCCCCCTCATATGAGTTGTGA 57.871 47.619 27.03 16.38 40.48 3.58
4647 7037 3.041211 TCCCCCTCATATGAGTTGTGAG 58.959 50.000 27.03 13.15 40.48 3.51
4657 7047 0.836400 GAGTTGTGAGGACTGGGGGA 60.836 60.000 0.00 0.00 0.00 4.81
4684 7261 7.148557 TGTCGAAACTTGACAAATATCGCATAA 60.149 33.333 9.89 0.00 42.99 1.90
4777 7365 0.891373 TCTCTTCTAGTGCTTGCGCT 59.109 50.000 9.73 13.32 36.97 5.92
4828 7420 6.310960 CGCTTGTTGTGCAACTGTTATATTA 58.689 36.000 14.97 0.00 41.67 0.98
4892 7484 5.209818 ACTGTGAAGTCTTAAACCATCGA 57.790 39.130 0.00 0.00 0.00 3.59
4893 7485 5.230942 ACTGTGAAGTCTTAAACCATCGAG 58.769 41.667 0.00 0.00 0.00 4.04
4918 7510 1.893786 CCTGCTGCCGTCTTCTACT 59.106 57.895 0.00 0.00 0.00 2.57
4950 7942 4.222114 GTTCCTTGCATCTTTCTTTCGTG 58.778 43.478 0.00 0.00 0.00 4.35
4954 7946 4.676924 CCTTGCATCTTTCTTTCGTGTTTC 59.323 41.667 0.00 0.00 0.00 2.78
4959 7951 3.676540 TCTTTCTTTCGTGTTTCGTTGC 58.323 40.909 0.00 0.00 40.80 4.17
4964 7956 3.311322 TCTTTCGTGTTTCGTTGCTCAAT 59.689 39.130 0.00 0.00 40.80 2.57
4965 7957 3.684103 TTCGTGTTTCGTTGCTCAATT 57.316 38.095 0.00 0.00 40.80 2.32
4987 7979 2.952978 TGACGATCTAGGGCTCTTTCTC 59.047 50.000 0.00 0.00 0.00 2.87
5009 8001 2.229062 TGTTTTGTTGACGACCAAAGCA 59.771 40.909 0.00 0.00 36.36 3.91
5042 8034 5.513788 CCTGATTGAAGTCTGAGGGAAAGAA 60.514 44.000 0.00 0.00 0.00 2.52
5048 8040 6.289064 TGAAGTCTGAGGGAAAGAAAACTAC 58.711 40.000 0.00 0.00 0.00 2.73
5053 8045 9.268282 AGTCTGAGGGAAAGAAAACTACATATA 57.732 33.333 0.00 0.00 0.00 0.86
5103 8096 2.437359 ATTGCGCCTGTCCAGCTC 60.437 61.111 4.18 0.00 0.00 4.09
5120 8113 3.497640 CAGCTCACTCCTTTGACTTTCAG 59.502 47.826 0.00 0.00 0.00 3.02
5161 8170 4.099881 GGCAGCCAGATCATTTAAAATCCA 59.900 41.667 6.55 0.00 0.00 3.41
5278 8289 3.114647 GATCGACGACTCGCCTGCT 62.115 63.158 0.00 0.00 39.96 4.24
5282 8293 2.356313 ACGACTCGCCTGCTTGTG 60.356 61.111 0.00 0.00 0.00 3.33
5283 8294 2.356313 CGACTCGCCTGCTTGTGT 60.356 61.111 0.00 0.00 0.00 3.72
5286 8297 2.667536 CTCGCCTGCTTGTGTGCT 60.668 61.111 0.00 0.00 0.00 4.40
5287 8298 1.374631 CTCGCCTGCTTGTGTGCTA 60.375 57.895 0.00 0.00 0.00 3.49
5355 8370 8.669243 AGAAGCAAATCAAATACTACTACTTGC 58.331 33.333 0.00 0.00 37.50 4.01
5386 8401 2.954611 GGCCGGTTCACAAAGAGC 59.045 61.111 1.90 0.00 0.00 4.09
5387 8402 1.896660 GGCCGGTTCACAAAGAGCA 60.897 57.895 1.90 0.00 0.00 4.26
5388 8403 1.282875 GCCGGTTCACAAAGAGCAC 59.717 57.895 1.90 0.00 0.00 4.40
5389 8404 1.569493 CCGGTTCACAAAGAGCACG 59.431 57.895 0.00 0.00 0.00 5.34
5390 8405 1.082756 CGGTTCACAAAGAGCACGC 60.083 57.895 0.00 0.00 0.00 5.34
5391 8406 1.771073 CGGTTCACAAAGAGCACGCA 61.771 55.000 0.00 0.00 0.00 5.24
5392 8407 0.593128 GGTTCACAAAGAGCACGCAT 59.407 50.000 0.00 0.00 0.00 4.73
5393 8408 1.664016 GGTTCACAAAGAGCACGCATG 60.664 52.381 0.00 0.00 0.00 4.06
5402 8417 2.743538 GCACGCATGCCAGAGACA 60.744 61.111 13.15 0.00 46.97 3.41
5403 8418 2.110967 GCACGCATGCCAGAGACAT 61.111 57.895 13.15 0.00 46.97 3.06
5404 8419 1.651240 GCACGCATGCCAGAGACATT 61.651 55.000 13.15 0.00 46.97 2.71
5405 8420 0.376152 CACGCATGCCAGAGACATTC 59.624 55.000 13.15 0.00 0.00 2.67
5406 8421 0.745845 ACGCATGCCAGAGACATTCC 60.746 55.000 13.15 0.00 0.00 3.01
5407 8422 1.769098 CGCATGCCAGAGACATTCCG 61.769 60.000 13.15 0.00 0.00 4.30
5408 8423 2.020131 CATGCCAGAGACATTCCGC 58.980 57.895 0.00 0.00 0.00 5.54
5409 8424 0.463295 CATGCCAGAGACATTCCGCT 60.463 55.000 0.00 0.00 0.00 5.52
5410 8425 0.463295 ATGCCAGAGACATTCCGCTG 60.463 55.000 0.00 0.00 0.00 5.18
5411 8426 2.467826 GCCAGAGACATTCCGCTGC 61.468 63.158 0.00 0.00 0.00 5.25
5412 8427 1.817099 CCAGAGACATTCCGCTGCC 60.817 63.158 0.00 0.00 0.00 4.85
5413 8428 1.220206 CAGAGACATTCCGCTGCCT 59.780 57.895 0.00 0.00 0.00 4.75
5414 8429 0.461548 CAGAGACATTCCGCTGCCTA 59.538 55.000 0.00 0.00 0.00 3.93
5415 8430 0.749649 AGAGACATTCCGCTGCCTAG 59.250 55.000 0.00 0.00 0.00 3.02
5416 8431 0.461961 GAGACATTCCGCTGCCTAGT 59.538 55.000 0.00 0.00 0.00 2.57
5417 8432 0.176680 AGACATTCCGCTGCCTAGTG 59.823 55.000 0.00 0.00 0.00 2.74
5418 8433 0.175760 GACATTCCGCTGCCTAGTGA 59.824 55.000 0.00 0.00 36.52 3.41
5419 8434 0.108138 ACATTCCGCTGCCTAGTGAC 60.108 55.000 0.00 0.00 36.52 3.67
5420 8435 0.811616 CATTCCGCTGCCTAGTGACC 60.812 60.000 0.00 0.00 36.52 4.02
5421 8436 0.978146 ATTCCGCTGCCTAGTGACCT 60.978 55.000 0.00 0.00 36.52 3.85
5422 8437 1.605058 TTCCGCTGCCTAGTGACCTC 61.605 60.000 0.00 0.00 36.52 3.85
5423 8438 2.055042 CCGCTGCCTAGTGACCTCT 61.055 63.158 0.00 0.00 36.52 3.69
5424 8439 1.435515 CGCTGCCTAGTGACCTCTC 59.564 63.158 0.00 0.00 36.52 3.20
5425 8440 1.435515 GCTGCCTAGTGACCTCTCG 59.564 63.158 0.00 0.00 0.00 4.04
5426 8441 1.316706 GCTGCCTAGTGACCTCTCGT 61.317 60.000 0.00 0.00 0.00 4.18
5427 8442 2.017623 GCTGCCTAGTGACCTCTCGTA 61.018 57.143 0.00 0.00 0.00 3.43
5428 8443 1.944024 CTGCCTAGTGACCTCTCGTAG 59.056 57.143 0.00 0.00 0.00 3.51
5429 8444 0.664224 GCCTAGTGACCTCTCGTAGC 59.336 60.000 0.00 0.00 0.00 3.58
5430 8445 1.747898 GCCTAGTGACCTCTCGTAGCT 60.748 57.143 0.00 0.00 0.00 3.32
5489 8504 2.747686 GAACGGGCCCTTGACTCA 59.252 61.111 22.43 0.00 0.00 3.41
5833 8862 7.308408 GGCTAGTTGTTTTCGGTAGAAAGAAAT 60.308 37.037 0.00 0.00 45.86 2.17
5834 8863 7.745155 GCTAGTTGTTTTCGGTAGAAAGAAATC 59.255 37.037 0.00 0.00 45.86 2.17
5836 8880 7.415229 AGTTGTTTTCGGTAGAAAGAAATCAC 58.585 34.615 2.41 0.00 45.86 3.06
5842 8886 5.245531 TCGGTAGAAAGAAATCACAGCAAT 58.754 37.500 0.00 0.00 0.00 3.56
5845 8889 6.313905 CGGTAGAAAGAAATCACAGCAATAGT 59.686 38.462 0.00 0.00 0.00 2.12
5846 8890 7.148407 CGGTAGAAAGAAATCACAGCAATAGTT 60.148 37.037 0.00 0.00 0.00 2.24
5847 8891 8.515414 GGTAGAAAGAAATCACAGCAATAGTTT 58.485 33.333 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.559668 CAAGACCAAGCCATGACATTGT 59.440 45.455 0.00 0.00 0.00 2.71
67 68 4.035909 AGGGAAAACATAACACGACACAAC 59.964 41.667 0.00 0.00 0.00 3.32
120 134 4.898265 TGGGAACATGAGGAGAAGAGATAG 59.102 45.833 0.00 0.00 33.40 2.08
199 213 5.030147 TGAGTGTGGAAGGTTAGTATCCAT 58.970 41.667 0.00 0.00 44.55 3.41
213 227 0.322726 CACCATGCCATGAGTGTGGA 60.323 55.000 6.18 0.00 42.02 4.02
236 250 1.237285 GGACAATCAACCACAGCGCT 61.237 55.000 2.64 2.64 0.00 5.92
238 252 0.606401 AGGGACAATCAACCACAGCG 60.606 55.000 0.00 0.00 0.00 5.18
242 256 0.598065 GTGCAGGGACAATCAACCAC 59.402 55.000 0.00 0.00 0.00 4.16
243 257 0.478072 AGTGCAGGGACAATCAACCA 59.522 50.000 0.00 0.00 0.00 3.67
284 298 1.681076 GTTGGCTAGGGTTTCGGGA 59.319 57.895 0.00 0.00 0.00 5.14
316 331 1.574702 GGAAGACGGCTGGGAAAACG 61.575 60.000 0.00 0.00 0.00 3.60
317 332 0.250770 AGGAAGACGGCTGGGAAAAC 60.251 55.000 0.00 0.00 0.00 2.43
327 342 1.301423 CTCGACCTAGAGGAAGACGG 58.699 60.000 1.60 0.00 38.94 4.79
391 406 4.246458 ACAAGATCTACGAAAGGAAGCAC 58.754 43.478 0.00 0.00 0.00 4.40
396 411 3.181493 GGCGTACAAGATCTACGAAAGGA 60.181 47.826 18.35 0.00 39.50 3.36
402 417 1.001597 GGGAGGCGTACAAGATCTACG 60.002 57.143 11.36 11.36 40.00 3.51
404 419 2.447408 TGGGAGGCGTACAAGATCTA 57.553 50.000 0.00 0.00 0.00 1.98
414 429 1.068127 GTTGTATCGTATGGGAGGCGT 59.932 52.381 0.00 0.00 0.00 5.68
484 499 2.668279 GCAATGCCGAAGTCACGAAAAT 60.668 45.455 0.00 0.00 35.09 1.82
532 547 0.953960 CGGTGTTGGTAGAGGCAACC 60.954 60.000 0.00 0.00 37.53 3.77
534 549 0.034337 GACGGTGTTGGTAGAGGCAA 59.966 55.000 0.00 0.00 0.00 4.52
542 557 1.052124 TTGGAGAGGACGGTGTTGGT 61.052 55.000 0.00 0.00 0.00 3.67
597 612 2.267006 CTGCATCGGAGCTGTGGT 59.733 61.111 0.00 0.00 34.99 4.16
629 644 2.124983 CGGAGATGGTGGTGGCAG 60.125 66.667 0.00 0.00 0.00 4.85
686 701 0.904649 TCACGTTGGCAGATCTCCAT 59.095 50.000 12.78 0.00 32.92 3.41
701 716 1.257936 CAACTGACGACCAAGTTCACG 59.742 52.381 0.00 0.00 0.00 4.35
717 732 4.340950 CAGTGTTAAACATCCCCAACAACT 59.659 41.667 0.00 0.00 33.04 3.16
752 767 0.793861 CCCAAAGAAACGAATCGCGA 59.206 50.000 13.09 13.09 44.57 5.87
754 769 0.456142 GGCCCAAAGAAACGAATCGC 60.456 55.000 1.15 0.00 0.00 4.58
783 798 4.645921 GGCAAGTGCGGTTGTGGC 62.646 66.667 0.00 0.00 43.26 5.01
787 802 3.365265 GAGGGGCAAGTGCGGTTG 61.365 66.667 0.00 0.00 43.26 3.77
788 803 4.660938 GGAGGGGCAAGTGCGGTT 62.661 66.667 0.00 0.00 43.26 4.44
815 830 2.506217 TCGCGCCGTGAGACAATC 60.506 61.111 0.00 0.00 0.00 2.67
884 899 5.227569 TGAGTTTGGCTATCAACTCTGAA 57.772 39.130 13.72 0.00 35.97 3.02
885 900 4.890158 TGAGTTTGGCTATCAACTCTGA 57.110 40.909 13.72 0.00 35.97 3.27
902 917 3.532155 GGCTCCTCCGCGATGAGT 61.532 66.667 8.23 0.00 29.27 3.41
923 938 1.571919 CTTGGTTTATCGCGAGGAGG 58.428 55.000 16.66 0.00 0.00 4.30
929 944 2.588106 CGAAAAAGCTTGGTTTATCGCG 59.412 45.455 0.00 0.00 0.00 5.87
933 948 3.257375 GGACCCGAAAAAGCTTGGTTTAT 59.743 43.478 0.00 0.00 0.00 1.40
935 950 1.411246 GGACCCGAAAAAGCTTGGTTT 59.589 47.619 0.00 0.00 0.00 3.27
937 952 1.170290 CGGACCCGAAAAAGCTTGGT 61.170 55.000 0.00 1.61 42.83 3.67
949 964 3.812019 CTCGTCTCCACGGACCCG 61.812 72.222 6.94 6.94 46.70 5.28
956 971 0.596577 TACTGTGTGCTCGTCTCCAC 59.403 55.000 0.00 0.00 0.00 4.02
999 1014 0.037882 TGCTCTCGACTTTGAGGCTG 60.038 55.000 0.00 0.00 36.61 4.85
1038 1053 0.101399 ACTCGGCTAGCATCTCAACG 59.899 55.000 18.24 9.00 0.00 4.10
1040 1055 1.406898 CTGACTCGGCTAGCATCTCAA 59.593 52.381 18.24 0.00 0.00 3.02
1096 1111 1.594293 CTGCCTCGTTGTCGTTGGT 60.594 57.895 0.00 0.00 38.33 3.67
1113 1130 2.941583 GGAAAGTGGGAGGGGCCT 60.942 66.667 0.84 0.00 36.66 5.19
1131 1148 1.212935 GAGCACATGGTGATTACCCCT 59.787 52.381 3.88 0.00 46.96 4.79
1146 1167 0.461961 AGCCTAGGTTCGATGAGCAC 59.538 55.000 11.31 0.00 0.00 4.40
1148 1169 1.576356 CAAGCCTAGGTTCGATGAGC 58.424 55.000 11.31 0.00 0.00 4.26
1181 1261 4.038162 AGTCCAAGTGCCGAAGATAGATAC 59.962 45.833 0.00 0.00 0.00 2.24
1237 1317 2.619074 GGCATTGAACTAGTCCAAGCCT 60.619 50.000 20.35 0.00 35.58 4.58
1475 1715 2.813908 CAGTAGCCCCGTCGTTGC 60.814 66.667 0.00 0.00 0.00 4.17
1482 1722 4.109675 CCCAACCCAGTAGCCCCG 62.110 72.222 0.00 0.00 0.00 5.73
1859 2126 7.961351 TCACAAACATGGGTAAAGAATGAAAT 58.039 30.769 0.00 0.00 0.00 2.17
1912 2182 7.439381 TCATTCTCCACGTTCTTAAAAGTACT 58.561 34.615 0.00 0.00 0.00 2.73
2035 2308 3.566742 TCTGGTATCATCATTGCACATGC 59.433 43.478 0.00 0.00 42.50 4.06
2214 2490 1.135915 AGCACGATGTCACTCTCCATC 59.864 52.381 0.00 0.00 35.26 3.51
2232 2508 4.092675 GTGTTCAGCTGATCTACTTGAAGC 59.907 45.833 19.04 0.00 0.00 3.86
2284 4387 2.290323 GCTCAGTAACCTCCACCAATGT 60.290 50.000 0.00 0.00 0.00 2.71
2287 4390 1.347707 CTGCTCAGTAACCTCCACCAA 59.652 52.381 0.00 0.00 0.00 3.67
2802 4979 2.695147 TGATCTCACACATGCGGTATCT 59.305 45.455 0.00 0.00 0.00 1.98
2967 5149 1.468736 GCAAATAGACCAGCAGCTTGC 60.469 52.381 0.00 0.00 45.46 4.01
3248 5489 9.120538 GCAATCAGTTTTCCCTACATATCTTTA 57.879 33.333 0.00 0.00 0.00 1.85
3252 5493 6.942532 TGCAATCAGTTTTCCCTACATATC 57.057 37.500 0.00 0.00 0.00 1.63
3261 5502 6.849588 AAGACAAATTGCAATCAGTTTTCC 57.150 33.333 13.38 2.96 30.96 3.13
3276 5517 7.062322 TCCCTGAACATATGCATAAGACAAAT 58.938 34.615 15.50 0.00 0.00 2.32
3471 5749 4.454948 TCAAGTGCTGACCAACGG 57.545 55.556 0.00 0.00 0.00 4.44
3509 5787 1.405821 GGATAGGATCTATGCCGACGG 59.594 57.143 10.29 10.29 0.00 4.79
3510 5788 1.405821 GGGATAGGATCTATGCCGACG 59.594 57.143 9.19 0.00 0.00 5.12
3514 5792 1.405821 CGTCGGGATAGGATCTATGCC 59.594 57.143 13.34 13.34 32.83 4.40
3515 5793 1.405821 CCGTCGGGATAGGATCTATGC 59.594 57.143 2.34 0.00 34.06 3.14
3516 5794 1.405821 GCCGTCGGGATAGGATCTATG 59.594 57.143 14.38 0.00 34.06 2.23
3517 5795 1.685491 GGCCGTCGGGATAGGATCTAT 60.685 57.143 14.38 0.00 34.06 1.98
3518 5796 0.323178 GGCCGTCGGGATAGGATCTA 60.323 60.000 14.38 0.00 34.06 1.98
3519 5797 1.606889 GGCCGTCGGGATAGGATCT 60.607 63.158 14.38 0.00 34.06 2.75
3520 5798 0.323178 TAGGCCGTCGGGATAGGATC 60.323 60.000 14.38 0.00 34.06 3.36
3521 5799 0.611340 GTAGGCCGTCGGGATAGGAT 60.611 60.000 14.38 0.00 34.06 3.24
3522 5800 1.228367 GTAGGCCGTCGGGATAGGA 60.228 63.158 14.38 0.00 34.06 2.94
3523 5801 2.273912 GGTAGGCCGTCGGGATAGG 61.274 68.421 14.38 0.00 34.06 2.57
3524 5802 3.363351 GGTAGGCCGTCGGGATAG 58.637 66.667 14.38 0.00 34.06 2.08
3545 5823 1.405461 CAACATATCCGTCGGCGTAG 58.595 55.000 9.28 1.66 36.15 3.51
3546 5824 0.595567 GCAACATATCCGTCGGCGTA 60.596 55.000 9.28 0.00 36.15 4.42
3547 5825 1.881252 GCAACATATCCGTCGGCGT 60.881 57.895 9.28 0.00 36.15 5.68
3548 5826 2.594962 GGCAACATATCCGTCGGCG 61.595 63.158 6.34 0.29 37.95 6.46
3549 5827 2.594962 CGGCAACATATCCGTCGGC 61.595 63.158 6.34 0.00 40.72 5.54
3550 5828 1.066752 TCGGCAACATATCCGTCGG 59.933 57.895 4.39 4.39 45.44 4.79
3551 5829 1.537289 CGTCGGCAACATATCCGTCG 61.537 60.000 6.02 6.02 46.47 5.12
3552 5830 1.213094 CCGTCGGCAACATATCCGTC 61.213 60.000 0.00 0.00 45.44 4.79
3553 5831 1.227147 CCGTCGGCAACATATCCGT 60.227 57.895 0.00 0.00 45.44 4.69
3554 5832 0.319555 ATCCGTCGGCAACATATCCG 60.320 55.000 6.34 0.00 46.52 4.18
3555 5833 2.736144 TATCCGTCGGCAACATATCC 57.264 50.000 6.34 0.00 0.00 2.59
3556 5834 3.585862 ACATATCCGTCGGCAACATATC 58.414 45.455 6.34 0.00 0.00 1.63
3557 5835 3.678056 ACATATCCGTCGGCAACATAT 57.322 42.857 6.34 1.79 0.00 1.78
3558 5836 3.127589 CAACATATCCGTCGGCAACATA 58.872 45.455 6.34 0.00 0.00 2.29
3559 5837 1.939934 CAACATATCCGTCGGCAACAT 59.060 47.619 6.34 0.00 0.00 2.71
3560 5838 1.364721 CAACATATCCGTCGGCAACA 58.635 50.000 6.34 0.00 0.00 3.33
3561 5839 0.027586 GCAACATATCCGTCGGCAAC 59.972 55.000 6.34 0.00 0.00 4.17
3562 5840 1.092921 GGCAACATATCCGTCGGCAA 61.093 55.000 6.34 0.00 0.00 4.52
3563 5841 1.522806 GGCAACATATCCGTCGGCA 60.523 57.895 6.34 0.00 0.00 5.69
3564 5842 2.594962 CGGCAACATATCCGTCGGC 61.595 63.158 6.34 0.00 40.72 5.54
3565 5843 1.066752 TCGGCAACATATCCGTCGG 59.933 57.895 4.39 4.39 45.44 4.79
3566 5844 1.537289 CGTCGGCAACATATCCGTCG 61.537 60.000 6.02 6.02 46.47 5.12
3567 5845 1.213094 CCGTCGGCAACATATCCGTC 61.213 60.000 0.00 0.00 45.44 4.79
3568 5846 1.227147 CCGTCGGCAACATATCCGT 60.227 57.895 0.00 0.00 45.44 4.69
3569 5847 3.625232 CCGTCGGCAACATATCCG 58.375 61.111 0.00 0.00 46.52 4.18
3586 5864 4.894896 CCCCCGTTGGCATAGGGC 62.895 72.222 19.05 0.00 43.74 5.19
3631 5909 4.280494 CGACCCCTATGCCGACGG 62.280 72.222 10.29 10.29 0.00 4.79
3632 5910 2.083835 AATCGACCCCTATGCCGACG 62.084 60.000 0.00 0.00 33.69 5.12
3633 5911 0.319641 GAATCGACCCCTATGCCGAC 60.320 60.000 0.00 0.00 33.69 4.79
3634 5912 1.469335 GGAATCGACCCCTATGCCGA 61.469 60.000 0.00 0.00 35.43 5.54
3635 5913 1.004918 GGAATCGACCCCTATGCCG 60.005 63.158 0.00 0.00 0.00 5.69
3636 5914 1.004918 CGGAATCGACCCCTATGCC 60.005 63.158 0.00 0.00 39.00 4.40
3637 5915 1.004918 CCGGAATCGACCCCTATGC 60.005 63.158 0.00 0.00 39.00 3.14
3638 5916 1.544691 CTACCGGAATCGACCCCTATG 59.455 57.143 9.46 0.00 39.00 2.23
3639 5917 1.146566 ACTACCGGAATCGACCCCTAT 59.853 52.381 9.46 0.00 39.00 2.57
3640 5918 0.552848 ACTACCGGAATCGACCCCTA 59.447 55.000 9.46 0.00 39.00 3.53
3641 5919 1.041447 CACTACCGGAATCGACCCCT 61.041 60.000 9.46 0.00 39.00 4.79
3642 5920 1.440476 CACTACCGGAATCGACCCC 59.560 63.158 9.46 0.00 39.00 4.95
3643 5921 1.227176 GCACTACCGGAATCGACCC 60.227 63.158 9.46 0.00 39.00 4.46
3644 5922 0.108520 TTGCACTACCGGAATCGACC 60.109 55.000 9.46 0.00 39.00 4.79
3645 5923 1.717194 TTTGCACTACCGGAATCGAC 58.283 50.000 9.46 0.00 39.00 4.20
3646 5924 2.684001 ATTTGCACTACCGGAATCGA 57.316 45.000 9.46 0.00 39.00 3.59
3647 5925 3.191669 TGTATTTGCACTACCGGAATCG 58.808 45.455 9.46 0.00 0.00 3.34
3648 5926 4.814234 TGATGTATTTGCACTACCGGAATC 59.186 41.667 9.46 0.00 0.00 2.52
3649 5927 4.776349 TGATGTATTTGCACTACCGGAAT 58.224 39.130 9.46 0.00 0.00 3.01
3650 5928 4.209307 TGATGTATTTGCACTACCGGAA 57.791 40.909 9.46 0.00 0.00 4.30
3651 5929 3.897141 TGATGTATTTGCACTACCGGA 57.103 42.857 9.46 0.00 0.00 5.14
3652 5930 3.687212 TGTTGATGTATTTGCACTACCGG 59.313 43.478 0.00 0.00 0.00 5.28
3653 5931 4.937696 TGTTGATGTATTTGCACTACCG 57.062 40.909 0.00 0.00 0.00 4.02
3654 5932 7.938563 TTTTTGTTGATGTATTTGCACTACC 57.061 32.000 0.00 0.00 0.00 3.18
3746 6025 4.967084 AATCCACACAACACCTACACTA 57.033 40.909 0.00 0.00 0.00 2.74
3785 6067 9.699410 TGGAATATACTGACCAATTCTCAATTT 57.301 29.630 0.00 0.00 0.00 1.82
3786 6068 9.699410 TTGGAATATACTGACCAATTCTCAATT 57.301 29.630 0.00 0.00 37.46 2.32
3787 6069 9.347240 CTTGGAATATACTGACCAATTCTCAAT 57.653 33.333 0.00 0.00 40.78 2.57
3790 6072 7.172361 GCTCTTGGAATATACTGACCAATTCTC 59.828 40.741 0.00 0.00 40.78 2.87
3824 6107 7.041107 TCTGTTTAGCATTTCAGCAACTTTTT 58.959 30.769 0.00 0.00 36.85 1.94
3826 6109 6.147864 TCTGTTTAGCATTTCAGCAACTTT 57.852 33.333 0.00 0.00 36.85 2.66
3831 6114 5.477984 AGGAAATCTGTTTAGCATTTCAGCA 59.522 36.000 6.09 0.00 36.85 4.41
3832 6115 5.958955 AGGAAATCTGTTTAGCATTTCAGC 58.041 37.500 6.09 0.00 31.22 4.26
3833 6116 8.734386 ACTAAGGAAATCTGTTTAGCATTTCAG 58.266 33.333 6.09 0.65 31.22 3.02
3838 6121 8.635765 TCAAACTAAGGAAATCTGTTTAGCAT 57.364 30.769 0.00 0.00 30.89 3.79
3908 6268 6.899393 TGCCACTTCAAAGAGAATTTGTAT 57.101 33.333 0.00 0.00 35.25 2.29
3942 6303 1.152546 GGCACTCCAAAACACCCCT 60.153 57.895 0.00 0.00 0.00 4.79
4002 6364 4.817318 AAAACTCCTCTTTGCCACAAAA 57.183 36.364 0.00 0.00 0.00 2.44
4003 6365 6.462347 GGAATAAAACTCCTCTTTGCCACAAA 60.462 38.462 0.00 0.00 0.00 2.83
4004 6366 5.010617 GGAATAAAACTCCTCTTTGCCACAA 59.989 40.000 0.00 0.00 0.00 3.33
4005 6367 4.522789 GGAATAAAACTCCTCTTTGCCACA 59.477 41.667 0.00 0.00 0.00 4.17
4006 6368 4.522789 TGGAATAAAACTCCTCTTTGCCAC 59.477 41.667 0.00 0.00 33.77 5.01
4007 6369 4.735369 TGGAATAAAACTCCTCTTTGCCA 58.265 39.130 0.00 0.00 33.77 4.92
4008 6370 5.722021 TTGGAATAAAACTCCTCTTTGCC 57.278 39.130 0.00 0.00 33.77 4.52
4009 6371 8.607441 AATTTTGGAATAAAACTCCTCTTTGC 57.393 30.769 0.00 0.00 33.77 3.68
4032 6394 9.950496 CTTGCCAGTAGATTGTAATCCTATAAT 57.050 33.333 1.16 0.00 36.04 1.28
4033 6395 9.154632 TCTTGCCAGTAGATTGTAATCCTATAA 57.845 33.333 1.16 0.00 36.04 0.98
4034 6396 8.721133 TCTTGCCAGTAGATTGTAATCCTATA 57.279 34.615 1.16 0.00 36.04 1.31
4035 6397 7.510685 TCTCTTGCCAGTAGATTGTAATCCTAT 59.489 37.037 1.16 0.00 36.04 2.57
4036 6398 6.839134 TCTCTTGCCAGTAGATTGTAATCCTA 59.161 38.462 1.16 0.00 36.04 2.94
4037 6399 5.663106 TCTCTTGCCAGTAGATTGTAATCCT 59.337 40.000 1.16 0.00 36.04 3.24
4038 6400 5.918608 TCTCTTGCCAGTAGATTGTAATCC 58.081 41.667 1.16 0.00 36.04 3.01
4039 6401 6.648725 GGATCTCTTGCCAGTAGATTGTAATC 59.351 42.308 0.00 0.00 35.64 1.75
4040 6402 6.328672 AGGATCTCTTGCCAGTAGATTGTAAT 59.671 38.462 0.00 0.00 30.19 1.89
4041 6403 5.663106 AGGATCTCTTGCCAGTAGATTGTAA 59.337 40.000 0.00 0.00 30.19 2.41
4042 6404 5.211973 AGGATCTCTTGCCAGTAGATTGTA 58.788 41.667 0.00 0.00 30.19 2.41
4043 6405 4.036518 AGGATCTCTTGCCAGTAGATTGT 58.963 43.478 0.00 0.00 30.19 2.71
4044 6406 4.630111 GAGGATCTCTTGCCAGTAGATTG 58.370 47.826 0.00 0.00 30.19 2.67
4045 6407 3.320541 CGAGGATCTCTTGCCAGTAGATT 59.679 47.826 0.00 0.00 30.19 2.40
4046 6408 2.890311 CGAGGATCTCTTGCCAGTAGAT 59.110 50.000 0.00 0.00 32.70 1.98
4047 6409 2.092375 TCGAGGATCTCTTGCCAGTAGA 60.092 50.000 0.00 0.00 0.00 2.59
4048 6410 2.302260 TCGAGGATCTCTTGCCAGTAG 58.698 52.381 0.00 0.00 0.00 2.57
4049 6411 2.437085 TCGAGGATCTCTTGCCAGTA 57.563 50.000 0.00 0.00 0.00 2.74
4050 6412 1.786937 ATCGAGGATCTCTTGCCAGT 58.213 50.000 0.00 0.00 0.00 4.00
4051 6413 2.625314 TGTATCGAGGATCTCTTGCCAG 59.375 50.000 0.00 0.00 0.00 4.85
4052 6414 2.666317 TGTATCGAGGATCTCTTGCCA 58.334 47.619 0.00 0.00 0.00 4.92
4053 6415 3.583806 CATGTATCGAGGATCTCTTGCC 58.416 50.000 0.00 0.00 0.00 4.52
4054 6416 3.256879 TCCATGTATCGAGGATCTCTTGC 59.743 47.826 0.00 0.00 0.00 4.01
4055 6417 5.058149 CTCCATGTATCGAGGATCTCTTG 57.942 47.826 0.00 0.00 0.00 3.02
4063 6425 0.833834 AGGCCCTCCATGTATCGAGG 60.834 60.000 0.00 8.38 44.59 4.63
4064 6426 0.605589 GAGGCCCTCCATGTATCGAG 59.394 60.000 0.00 0.00 33.74 4.04
4065 6427 0.188587 AGAGGCCCTCCATGTATCGA 59.811 55.000 7.26 0.00 33.74 3.59
4066 6428 0.605589 GAGAGGCCCTCCATGTATCG 59.394 60.000 7.26 0.00 35.87 2.92
4067 6429 1.622811 CAGAGAGGCCCTCCATGTATC 59.377 57.143 7.26 0.00 42.97 2.24
4068 6430 1.221523 TCAGAGAGGCCCTCCATGTAT 59.778 52.381 7.26 0.00 42.97 2.29
4069 6431 0.636647 TCAGAGAGGCCCTCCATGTA 59.363 55.000 7.26 0.00 42.97 2.29
4070 6432 0.252881 TTCAGAGAGGCCCTCCATGT 60.253 55.000 7.26 0.00 42.97 3.21
4071 6433 0.469070 CTTCAGAGAGGCCCTCCATG 59.531 60.000 7.26 6.80 42.97 3.66
4072 6434 0.043940 ACTTCAGAGAGGCCCTCCAT 59.956 55.000 7.26 0.00 42.97 3.41
4073 6435 0.710588 TACTTCAGAGAGGCCCTCCA 59.289 55.000 7.26 2.91 42.97 3.86
4074 6436 1.867363 TTACTTCAGAGAGGCCCTCC 58.133 55.000 7.26 0.00 42.97 4.30
4075 6437 3.983044 TTTTACTTCAGAGAGGCCCTC 57.017 47.619 1.26 1.26 42.28 4.30
4076 6438 3.846588 TGATTTTACTTCAGAGAGGCCCT 59.153 43.478 0.00 0.00 0.00 5.19
4077 6439 4.222124 TGATTTTACTTCAGAGAGGCCC 57.778 45.455 0.00 0.00 0.00 5.80
4078 6440 4.578105 CCATGATTTTACTTCAGAGAGGCC 59.422 45.833 0.00 0.00 0.00 5.19
4079 6441 5.431765 TCCATGATTTTACTTCAGAGAGGC 58.568 41.667 0.00 0.00 0.00 4.70
4080 6442 7.507829 AGATCCATGATTTTACTTCAGAGAGG 58.492 38.462 0.00 0.00 0.00 3.69
4081 6443 8.961294 AAGATCCATGATTTTACTTCAGAGAG 57.039 34.615 0.00 0.00 0.00 3.20
4089 6451 9.358406 TGCATTCATAAGATCCATGATTTTACT 57.642 29.630 8.09 0.00 32.63 2.24
4397 6770 9.675464 TTTAGGATACAATTGAAATACCGAGTT 57.325 29.630 13.59 0.00 41.41 3.01
4413 6786 7.298374 TCCTCTATCTGCTTCTTTAGGATACA 58.702 38.462 0.00 0.00 41.41 2.29
4416 6789 6.267471 CACTCCTCTATCTGCTTCTTTAGGAT 59.733 42.308 0.00 0.00 31.77 3.24
4420 6793 4.202060 CGCACTCCTCTATCTGCTTCTTTA 60.202 45.833 0.00 0.00 0.00 1.85
4421 6794 3.430098 CGCACTCCTCTATCTGCTTCTTT 60.430 47.826 0.00 0.00 0.00 2.52
4422 6795 2.100584 CGCACTCCTCTATCTGCTTCTT 59.899 50.000 0.00 0.00 0.00 2.52
4532 6922 2.536761 ATTCGTGAAAAGACCGTCCA 57.463 45.000 0.00 0.00 0.00 4.02
4626 7016 3.041211 CTCACAACTCATATGAGGGGGA 58.959 50.000 31.19 26.49 46.13 4.81
4632 7022 3.452264 CCCAGTCCTCACAACTCATATGA 59.548 47.826 5.07 5.07 0.00 2.15
4636 7026 0.987294 CCCCAGTCCTCACAACTCAT 59.013 55.000 0.00 0.00 0.00 2.90
4637 7027 1.127567 CCCCCAGTCCTCACAACTCA 61.128 60.000 0.00 0.00 0.00 3.41
4639 7029 0.178861 ATCCCCCAGTCCTCACAACT 60.179 55.000 0.00 0.00 0.00 3.16
4640 7030 0.035056 CATCCCCCAGTCCTCACAAC 60.035 60.000 0.00 0.00 0.00 3.32
4641 7031 0.475632 ACATCCCCCAGTCCTCACAA 60.476 55.000 0.00 0.00 0.00 3.33
4644 7034 1.685765 CGACATCCCCCAGTCCTCA 60.686 63.158 0.00 0.00 0.00 3.86
4645 7035 0.976073 TTCGACATCCCCCAGTCCTC 60.976 60.000 0.00 0.00 0.00 3.71
4646 7036 0.546747 TTTCGACATCCCCCAGTCCT 60.547 55.000 0.00 0.00 0.00 3.85
4647 7037 0.392595 GTTTCGACATCCCCCAGTCC 60.393 60.000 0.00 0.00 0.00 3.85
4648 7038 0.613777 AGTTTCGACATCCCCCAGTC 59.386 55.000 0.00 0.00 0.00 3.51
4649 7039 1.064825 AAGTTTCGACATCCCCCAGT 58.935 50.000 0.00 0.00 0.00 4.00
4650 7040 1.003118 TCAAGTTTCGACATCCCCCAG 59.997 52.381 0.00 0.00 0.00 4.45
4657 7047 5.121611 TGCGATATTTGTCAAGTTTCGACAT 59.878 36.000 19.80 0.00 42.69 3.06
4684 7261 7.415086 CCCTATAGTCTAATGGGTGAGTAGAT 58.585 42.308 10.75 0.00 33.92 1.98
4777 7365 4.939368 CCGCCAAACACCCGTCCA 62.939 66.667 0.00 0.00 0.00 4.02
4924 7916 5.748152 CGAAAGAAAGATGCAAGGAACAAAA 59.252 36.000 0.00 0.00 0.00 2.44
4927 7919 3.882888 ACGAAAGAAAGATGCAAGGAACA 59.117 39.130 0.00 0.00 0.00 3.18
4928 7920 4.222114 CACGAAAGAAAGATGCAAGGAAC 58.778 43.478 0.00 0.00 0.00 3.62
4930 7922 3.476552 ACACGAAAGAAAGATGCAAGGA 58.523 40.909 0.00 0.00 0.00 3.36
4931 7923 3.904136 ACACGAAAGAAAGATGCAAGG 57.096 42.857 0.00 0.00 0.00 3.61
4937 7929 4.035208 AGCAACGAAACACGAAAGAAAGAT 59.965 37.500 0.00 0.00 45.77 2.40
4950 7942 3.613563 TCGTCAAATTGAGCAACGAAAC 58.386 40.909 5.38 0.00 39.19 2.78
4954 7946 3.729526 AGATCGTCAAATTGAGCAACG 57.270 42.857 0.00 0.00 34.80 4.10
4959 7951 4.054671 GAGCCCTAGATCGTCAAATTGAG 58.945 47.826 0.00 0.00 0.00 3.02
4964 7956 3.769844 AGAAAGAGCCCTAGATCGTCAAA 59.230 43.478 0.00 0.00 32.16 2.69
4965 7957 3.366396 AGAAAGAGCCCTAGATCGTCAA 58.634 45.455 0.00 0.00 32.16 3.18
4987 7979 2.851824 GCTTTGGTCGTCAACAAAACAG 59.148 45.455 0.00 0.00 36.29 3.16
5009 8001 6.595682 TCAGACTTCAATCAGGTTTCTCTTT 58.404 36.000 0.00 0.00 0.00 2.52
5053 8045 7.422512 TCTCTAGGGATGGTTGCAGTATATAT 58.577 38.462 0.00 0.00 0.00 0.86
5054 8046 6.800890 TCTCTAGGGATGGTTGCAGTATATA 58.199 40.000 0.00 0.00 0.00 0.86
5055 8047 5.655394 TCTCTAGGGATGGTTGCAGTATAT 58.345 41.667 0.00 0.00 0.00 0.86
5056 8048 5.074746 TCTCTAGGGATGGTTGCAGTATA 57.925 43.478 0.00 0.00 0.00 1.47
5057 8049 3.928754 TCTCTAGGGATGGTTGCAGTAT 58.071 45.455 0.00 0.00 0.00 2.12
5058 8050 3.398318 TCTCTAGGGATGGTTGCAGTA 57.602 47.619 0.00 0.00 0.00 2.74
5061 8053 4.591321 AATTTCTCTAGGGATGGTTGCA 57.409 40.909 0.00 0.00 0.00 4.08
5120 8113 1.200948 GCCAGTTTCTTGCATCACTCC 59.799 52.381 0.00 0.00 0.00 3.85
5161 8170 8.523658 GTGGCTAATTTGGAGAAAGAAATAACT 58.476 33.333 0.00 0.00 0.00 2.24
5278 8289 1.003355 GGCTCCAGCTAGCACACAA 60.003 57.895 18.83 0.00 44.64 3.33
5282 8293 2.188994 CCAGGCTCCAGCTAGCAC 59.811 66.667 18.83 0.20 44.64 4.40
5283 8294 2.039462 TCCAGGCTCCAGCTAGCA 59.961 61.111 18.83 0.00 44.64 3.49
5355 8370 1.740296 CGGCCGGTGGTTGACTAAG 60.740 63.158 20.10 0.00 0.00 2.18
5386 8401 0.376152 GAATGTCTCTGGCATGCGTG 59.624 55.000 12.44 6.92 0.00 5.34
5387 8402 0.745845 GGAATGTCTCTGGCATGCGT 60.746 55.000 12.44 0.00 0.00 5.24
5388 8403 1.769098 CGGAATGTCTCTGGCATGCG 61.769 60.000 12.44 0.00 0.00 4.73
5389 8404 2.020131 CGGAATGTCTCTGGCATGC 58.980 57.895 9.90 9.90 0.00 4.06
5390 8405 0.463295 AGCGGAATGTCTCTGGCATG 60.463 55.000 0.00 0.00 0.00 4.06
5391 8406 0.463295 CAGCGGAATGTCTCTGGCAT 60.463 55.000 0.00 0.00 0.00 4.40
5392 8407 1.078918 CAGCGGAATGTCTCTGGCA 60.079 57.895 0.00 0.00 0.00 4.92
5393 8408 2.467826 GCAGCGGAATGTCTCTGGC 61.468 63.158 0.00 0.00 0.00 4.85
5394 8409 1.817099 GGCAGCGGAATGTCTCTGG 60.817 63.158 0.00 0.00 0.00 3.86
5395 8410 0.461548 TAGGCAGCGGAATGTCTCTG 59.538 55.000 0.00 0.00 36.33 3.35
5396 8411 0.749649 CTAGGCAGCGGAATGTCTCT 59.250 55.000 0.00 0.00 36.33 3.10
5397 8412 0.461961 ACTAGGCAGCGGAATGTCTC 59.538 55.000 0.00 0.00 36.33 3.36
5398 8413 0.176680 CACTAGGCAGCGGAATGTCT 59.823 55.000 0.00 0.00 38.95 3.41
5399 8414 0.175760 TCACTAGGCAGCGGAATGTC 59.824 55.000 0.00 0.00 0.00 3.06
5400 8415 0.108138 GTCACTAGGCAGCGGAATGT 60.108 55.000 0.00 0.00 0.00 2.71
5401 8416 0.811616 GGTCACTAGGCAGCGGAATG 60.812 60.000 0.00 0.00 0.00 2.67
5402 8417 0.978146 AGGTCACTAGGCAGCGGAAT 60.978 55.000 0.00 0.00 0.00 3.01
5403 8418 1.605058 GAGGTCACTAGGCAGCGGAA 61.605 60.000 0.00 0.00 0.00 4.30
5404 8419 2.037367 AGGTCACTAGGCAGCGGA 59.963 61.111 0.00 0.00 0.00 5.54
5405 8420 2.010582 GAGAGGTCACTAGGCAGCGG 62.011 65.000 0.00 0.00 0.00 5.52
5406 8421 1.435515 GAGAGGTCACTAGGCAGCG 59.564 63.158 0.00 0.00 0.00 5.18
5407 8422 1.316706 ACGAGAGGTCACTAGGCAGC 61.317 60.000 0.00 0.00 0.00 5.25
5408 8423 1.944024 CTACGAGAGGTCACTAGGCAG 59.056 57.143 0.00 0.00 0.00 4.85
5409 8424 2.017623 GCTACGAGAGGTCACTAGGCA 61.018 57.143 0.00 0.00 0.00 4.75
5410 8425 0.664224 GCTACGAGAGGTCACTAGGC 59.336 60.000 0.00 0.00 0.00 3.93
5411 8426 2.335316 AGCTACGAGAGGTCACTAGG 57.665 55.000 0.00 0.00 0.00 3.02
5418 8433 2.952978 CCTAACATGAGCTACGAGAGGT 59.047 50.000 0.00 0.00 39.10 3.85
5419 8434 2.952978 ACCTAACATGAGCTACGAGAGG 59.047 50.000 0.00 0.00 0.00 3.69
5420 8435 4.096532 TCAACCTAACATGAGCTACGAGAG 59.903 45.833 0.00 0.00 0.00 3.20
5421 8436 4.014406 TCAACCTAACATGAGCTACGAGA 58.986 43.478 0.00 0.00 0.00 4.04
5422 8437 4.371855 TCAACCTAACATGAGCTACGAG 57.628 45.455 0.00 0.00 0.00 4.18
5423 8438 4.645136 AGATCAACCTAACATGAGCTACGA 59.355 41.667 0.00 0.00 40.27 3.43
5424 8439 4.938080 AGATCAACCTAACATGAGCTACG 58.062 43.478 0.00 0.00 40.27 3.51
5425 8440 6.040391 AGAGAGATCAACCTAACATGAGCTAC 59.960 42.308 0.00 0.00 41.96 3.58
5426 8441 6.132658 AGAGAGATCAACCTAACATGAGCTA 58.867 40.000 0.00 0.00 41.96 3.32
5427 8442 4.961730 AGAGAGATCAACCTAACATGAGCT 59.038 41.667 0.00 0.00 44.36 4.09
5428 8443 5.275067 AGAGAGATCAACCTAACATGAGC 57.725 43.478 0.00 0.00 32.30 4.26
5429 8444 5.221422 GGGAGAGAGATCAACCTAACATGAG 60.221 48.000 0.00 0.00 0.00 2.90
5430 8445 4.651503 GGGAGAGAGATCAACCTAACATGA 59.348 45.833 0.00 0.00 0.00 3.07
5833 8862 5.473504 GGAGAAGGAAAAACTATTGCTGTGA 59.526 40.000 0.00 0.00 30.80 3.58
5834 8863 5.335976 GGGAGAAGGAAAAACTATTGCTGTG 60.336 44.000 0.00 0.00 30.80 3.66
5836 8880 4.766891 TGGGAGAAGGAAAAACTATTGCTG 59.233 41.667 0.00 0.00 30.80 4.41
5842 8886 5.831525 GGTTCTTTGGGAGAAGGAAAAACTA 59.168 40.000 0.00 0.00 44.78 2.24
5845 8889 3.964688 GGGTTCTTTGGGAGAAGGAAAAA 59.035 43.478 0.00 0.00 44.78 1.94
5846 8890 3.206639 AGGGTTCTTTGGGAGAAGGAAAA 59.793 43.478 0.00 0.00 44.78 2.29
5847 8891 2.789399 AGGGTTCTTTGGGAGAAGGAAA 59.211 45.455 0.00 0.00 44.78 3.13
5849 8894 2.133858 AGGGTTCTTTGGGAGAAGGA 57.866 50.000 0.00 0.00 44.78 3.36
5884 8951 2.119457 CGGCACAACTTTTCTTTGAGC 58.881 47.619 0.00 0.00 39.13 4.26
5920 8991 0.815734 GTCCGGATCGAGAGGAACAA 59.184 55.000 7.81 0.00 35.60 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.