Multiple sequence alignment - TraesCS1D01G303400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G303400 chr1D 100.000 3070 0 0 1 3070 401197193 401200262 0.000000e+00 5670.0
1 TraesCS1D01G303400 chr1D 94.359 195 10 1 1 194 401678996 401679190 6.440000e-77 298.0
2 TraesCS1D01G303400 chr1A 96.943 2748 56 9 1 2739 497281201 497283929 0.000000e+00 4584.0
3 TraesCS1D01G303400 chr1A 82.074 675 89 22 201 857 497516534 497517194 5.790000e-152 547.0
4 TraesCS1D01G303400 chr1A 95.385 195 8 1 1 194 497516302 497516496 2.970000e-80 309.0
5 TraesCS1D01G303400 chr1A 79.949 394 68 4 1728 2118 99908326 99907941 2.330000e-71 279.0
6 TraesCS1D01G303400 chr1B 96.286 2746 98 4 1 2744 539447379 539450122 0.000000e+00 4503.0
7 TraesCS1D01G303400 chr1B 87.982 1140 132 5 970 2107 539135527 539136663 0.000000e+00 1341.0
8 TraesCS1D01G303400 chr1B 87.188 320 31 7 544 858 539565474 539565788 3.770000e-94 355.0
9 TraesCS1D01G303400 chr1B 94.872 195 9 1 1 194 539564686 539564880 1.380000e-78 303.0
10 TraesCS1D01G303400 chr2D 81.778 450 44 16 2305 2744 103474909 103475330 2.930000e-90 342.0
11 TraesCS1D01G303400 chr2D 81.609 435 52 8 2314 2744 104272415 104272825 4.900000e-88 335.0
12 TraesCS1D01G303400 chr3A 76.109 699 140 19 1378 2056 714738667 714739358 1.050000e-89 340.0
13 TraesCS1D01G303400 chr3D 76.873 614 129 11 1380 1982 579614809 579615420 4.900000e-88 335.0
14 TraesCS1D01G303400 chr3B 75.728 618 116 20 1381 1982 735131236 735130637 2.330000e-71 279.0
15 TraesCS1D01G303400 chr3B 100.000 29 0 0 2912 2940 382315403 382315431 2.000000e-03 54.7
16 TraesCS1D01G303400 chr7D 74.569 464 97 19 1555 2003 504766768 504767225 1.880000e-42 183.0
17 TraesCS1D01G303400 chr6D 72.189 507 130 7 1556 2055 448159652 448159150 8.870000e-31 145.0
18 TraesCS1D01G303400 chr6B 92.105 38 3 0 2912 2949 100870686 100870649 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G303400 chr1D 401197193 401200262 3069 False 5670 5670 100.0000 1 3070 1 chr1D.!!$F1 3069
1 TraesCS1D01G303400 chr1A 497281201 497283929 2728 False 4584 4584 96.9430 1 2739 1 chr1A.!!$F1 2738
2 TraesCS1D01G303400 chr1A 497516302 497517194 892 False 428 547 88.7295 1 857 2 chr1A.!!$F2 856
3 TraesCS1D01G303400 chr1B 539447379 539450122 2743 False 4503 4503 96.2860 1 2744 1 chr1B.!!$F2 2743
4 TraesCS1D01G303400 chr1B 539135527 539136663 1136 False 1341 1341 87.9820 970 2107 1 chr1B.!!$F1 1137
5 TraesCS1D01G303400 chr1B 539564686 539565788 1102 False 329 355 91.0300 1 858 2 chr1B.!!$F3 857
6 TraesCS1D01G303400 chr3A 714738667 714739358 691 False 340 340 76.1090 1378 2056 1 chr3A.!!$F1 678
7 TraesCS1D01G303400 chr3D 579614809 579615420 611 False 335 335 76.8730 1380 1982 1 chr3D.!!$F1 602
8 TraesCS1D01G303400 chr3B 735130637 735131236 599 True 279 279 75.7280 1381 1982 1 chr3B.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 254 0.179018 GGCGGGGTTGATCAATAGCT 60.179 55.0 12.12 0.0 0.0 3.32 F
1107 1391 1.138047 GATCGACGGTTACTGGTGCG 61.138 60.0 0.00 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 2239 2.380064 TGCCTTCTTCAACCCATTGT 57.620 45.0 0.0 0.0 37.11 2.71 R
2781 3103 0.038159 GGAGATATCGGGTCGCCTTG 60.038 60.0 0.0 0.0 33.38 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
210 243 3.186656 AACAACTAGCGGCGGGGTT 62.187 57.895 9.78 0.00 0.00 4.11
215 248 3.078196 TAGCGGCGGGGTTGATCA 61.078 61.111 9.78 0.00 0.00 2.92
221 254 0.179018 GGCGGGGTTGATCAATAGCT 60.179 55.000 12.12 0.00 0.00 3.32
738 1021 5.590259 GGCAATTTAGGTCTCAGAATGCTAA 59.410 40.000 0.00 0.00 34.76 3.09
865 1148 7.054124 TCTTGTTCACAGTATTTTCTCCAGTT 58.946 34.615 0.00 0.00 0.00 3.16
869 1152 3.820467 CACAGTATTTTCTCCAGTTGCCA 59.180 43.478 0.00 0.00 0.00 4.92
1107 1391 1.138047 GATCGACGGTTACTGGTGCG 61.138 60.000 0.00 0.00 0.00 5.34
1924 2239 2.029020 CACTTGCTGAGCAGTACCACTA 60.029 50.000 7.39 0.00 40.61 2.74
2281 2596 1.560505 AACCCCCAAGACATGATTGC 58.439 50.000 0.00 0.00 0.00 3.56
2320 2638 5.957842 TTTCTTACAATGCTTTGGACGAT 57.042 34.783 15.92 0.00 37.15 3.73
2396 2714 2.908688 ACCCTGTTTTGATGTTTGCC 57.091 45.000 0.00 0.00 0.00 4.52
2562 2881 6.366877 CCATCTCCTTATGCACAAAACAAAAG 59.633 38.462 0.00 0.00 0.00 2.27
2572 2893 7.093322 TGCACAAAACAAAAGCCAAAAATAT 57.907 28.000 0.00 0.00 0.00 1.28
2662 2984 3.604875 AGCAATCAGGAATGGCTTTTG 57.395 42.857 0.00 0.00 42.38 2.44
2744 3066 9.793259 TCTGTTTTCTTAGAATACTTTGGACAT 57.207 29.630 14.61 0.00 0.00 3.06
2745 3067 9.831737 CTGTTTTCTTAGAATACTTTGGACATG 57.168 33.333 14.61 0.00 0.00 3.21
2746 3068 8.296713 TGTTTTCTTAGAATACTTTGGACATGC 58.703 33.333 14.61 0.00 0.00 4.06
2747 3069 6.662414 TTCTTAGAATACTTTGGACATGCG 57.338 37.500 0.00 0.00 0.00 4.73
2748 3070 5.116180 TCTTAGAATACTTTGGACATGCGG 58.884 41.667 0.00 0.00 0.00 5.69
2749 3071 2.643551 AGAATACTTTGGACATGCGGG 58.356 47.619 0.00 0.00 0.00 6.13
2750 3072 1.676006 GAATACTTTGGACATGCGGGG 59.324 52.381 0.00 0.00 0.00 5.73
2751 3073 0.751643 ATACTTTGGACATGCGGGGC 60.752 55.000 0.00 0.00 0.00 5.80
2752 3074 2.830186 TACTTTGGACATGCGGGGCC 62.830 60.000 0.00 0.00 0.00 5.80
2753 3075 3.944250 CTTTGGACATGCGGGGCCT 62.944 63.158 0.84 0.00 0.00 5.19
2754 3076 2.550699 CTTTGGACATGCGGGGCCTA 62.551 60.000 0.84 0.00 0.00 3.93
2755 3077 2.143575 TTTGGACATGCGGGGCCTAA 62.144 55.000 0.84 0.00 0.00 2.69
2756 3078 2.143575 TTGGACATGCGGGGCCTAAA 62.144 55.000 0.84 0.00 0.00 1.85
2757 3079 1.152756 GGACATGCGGGGCCTAAAT 60.153 57.895 0.84 0.00 0.00 1.40
2758 3080 0.755327 GGACATGCGGGGCCTAAATT 60.755 55.000 0.84 0.00 0.00 1.82
2759 3081 0.668535 GACATGCGGGGCCTAAATTC 59.331 55.000 0.84 0.00 0.00 2.17
2760 3082 0.033601 ACATGCGGGGCCTAAATTCA 60.034 50.000 0.84 0.00 0.00 2.57
2761 3083 1.331214 CATGCGGGGCCTAAATTCAT 58.669 50.000 0.84 0.00 0.00 2.57
2762 3084 1.000060 CATGCGGGGCCTAAATTCATG 60.000 52.381 0.84 4.77 0.00 3.07
2763 3085 1.363807 GCGGGGCCTAAATTCATGC 59.636 57.895 0.84 0.00 0.00 4.06
2764 3086 1.391157 GCGGGGCCTAAATTCATGCA 61.391 55.000 0.84 0.00 0.00 3.96
2765 3087 0.385390 CGGGGCCTAAATTCATGCAC 59.615 55.000 0.84 0.00 0.00 4.57
2766 3088 0.385390 GGGGCCTAAATTCATGCACG 59.615 55.000 0.84 0.00 0.00 5.34
2767 3089 0.249031 GGGCCTAAATTCATGCACGC 60.249 55.000 0.84 0.00 0.00 5.34
2768 3090 0.740737 GGCCTAAATTCATGCACGCT 59.259 50.000 0.00 0.00 0.00 5.07
2769 3091 1.268743 GGCCTAAATTCATGCACGCTC 60.269 52.381 0.00 0.00 0.00 5.03
2770 3092 1.401552 GCCTAAATTCATGCACGCTCA 59.598 47.619 0.00 0.00 0.00 4.26
2771 3093 2.159393 GCCTAAATTCATGCACGCTCAA 60.159 45.455 0.00 0.00 0.00 3.02
2772 3094 3.688272 CCTAAATTCATGCACGCTCAAG 58.312 45.455 0.00 0.00 0.00 3.02
2773 3095 3.374988 CCTAAATTCATGCACGCTCAAGA 59.625 43.478 0.00 0.00 0.00 3.02
2774 3096 4.036027 CCTAAATTCATGCACGCTCAAGAT 59.964 41.667 0.00 0.00 0.00 2.40
2775 3097 3.687572 AATTCATGCACGCTCAAGATC 57.312 42.857 0.00 0.00 0.00 2.75
2776 3098 2.391616 TTCATGCACGCTCAAGATCT 57.608 45.000 0.00 0.00 0.00 2.75
2777 3099 1.931906 TCATGCACGCTCAAGATCTC 58.068 50.000 0.00 0.00 0.00 2.75
2778 3100 1.205417 TCATGCACGCTCAAGATCTCA 59.795 47.619 0.00 0.00 0.00 3.27
2779 3101 2.004733 CATGCACGCTCAAGATCTCAA 58.995 47.619 0.00 0.00 0.00 3.02
2780 3102 2.168326 TGCACGCTCAAGATCTCAAA 57.832 45.000 0.00 0.00 0.00 2.69
2781 3103 1.800586 TGCACGCTCAAGATCTCAAAC 59.199 47.619 0.00 0.00 0.00 2.93
2782 3104 1.800586 GCACGCTCAAGATCTCAAACA 59.199 47.619 0.00 0.00 0.00 2.83
2783 3105 2.224079 GCACGCTCAAGATCTCAAACAA 59.776 45.455 0.00 0.00 0.00 2.83
2784 3106 3.666374 GCACGCTCAAGATCTCAAACAAG 60.666 47.826 0.00 0.00 0.00 3.16
2785 3107 3.070018 ACGCTCAAGATCTCAAACAAGG 58.930 45.455 0.00 0.00 0.00 3.61
2786 3108 2.159599 CGCTCAAGATCTCAAACAAGGC 60.160 50.000 0.00 0.00 0.00 4.35
2787 3109 2.159599 GCTCAAGATCTCAAACAAGGCG 60.160 50.000 0.00 0.00 0.00 5.52
2788 3110 3.329386 CTCAAGATCTCAAACAAGGCGA 58.671 45.455 0.00 0.00 0.00 5.54
2789 3111 3.067106 TCAAGATCTCAAACAAGGCGAC 58.933 45.455 0.00 0.00 0.00 5.19
2790 3112 2.100605 AGATCTCAAACAAGGCGACC 57.899 50.000 0.00 0.00 0.00 4.79
2791 3113 1.087501 GATCTCAAACAAGGCGACCC 58.912 55.000 0.00 0.00 0.00 4.46
2792 3114 0.673644 ATCTCAAACAAGGCGACCCG 60.674 55.000 0.00 0.00 35.76 5.28
2793 3115 1.301401 CTCAAACAAGGCGACCCGA 60.301 57.895 0.00 0.00 35.76 5.14
2794 3116 0.673644 CTCAAACAAGGCGACCCGAT 60.674 55.000 0.00 0.00 35.76 4.18
2795 3117 0.609151 TCAAACAAGGCGACCCGATA 59.391 50.000 0.00 0.00 35.76 2.92
2796 3118 1.208535 TCAAACAAGGCGACCCGATAT 59.791 47.619 0.00 0.00 35.76 1.63
2797 3119 1.597663 CAAACAAGGCGACCCGATATC 59.402 52.381 0.00 0.00 35.76 1.63
2798 3120 1.120530 AACAAGGCGACCCGATATCT 58.879 50.000 0.34 0.00 35.76 1.98
2799 3121 0.674534 ACAAGGCGACCCGATATCTC 59.325 55.000 0.34 0.00 35.76 2.75
2800 3122 0.038159 CAAGGCGACCCGATATCTCC 60.038 60.000 0.34 0.00 35.76 3.71
2801 3123 1.186267 AAGGCGACCCGATATCTCCC 61.186 60.000 0.34 0.00 35.76 4.30
2802 3124 2.647158 GGCGACCCGATATCTCCCC 61.647 68.421 0.34 0.00 0.00 4.81
2803 3125 1.606889 GCGACCCGATATCTCCCCT 60.607 63.158 0.34 0.00 0.00 4.79
2804 3126 1.878656 GCGACCCGATATCTCCCCTG 61.879 65.000 0.34 0.00 0.00 4.45
2805 3127 1.878656 CGACCCGATATCTCCCCTGC 61.879 65.000 0.34 0.00 0.00 4.85
2806 3128 0.543174 GACCCGATATCTCCCCTGCT 60.543 60.000 0.34 0.00 0.00 4.24
2807 3129 0.543174 ACCCGATATCTCCCCTGCTC 60.543 60.000 0.34 0.00 0.00 4.26
2808 3130 0.252012 CCCGATATCTCCCCTGCTCT 60.252 60.000 0.34 0.00 0.00 4.09
2809 3131 1.638529 CCGATATCTCCCCTGCTCTT 58.361 55.000 0.34 0.00 0.00 2.85
2810 3132 1.974236 CCGATATCTCCCCTGCTCTTT 59.026 52.381 0.34 0.00 0.00 2.52
2811 3133 2.289320 CCGATATCTCCCCTGCTCTTTG 60.289 54.545 0.34 0.00 0.00 2.77
2812 3134 2.366916 CGATATCTCCCCTGCTCTTTGT 59.633 50.000 0.34 0.00 0.00 2.83
2813 3135 3.181461 CGATATCTCCCCTGCTCTTTGTT 60.181 47.826 0.34 0.00 0.00 2.83
2814 3136 4.039245 CGATATCTCCCCTGCTCTTTGTTA 59.961 45.833 0.34 0.00 0.00 2.41
2815 3137 5.279708 CGATATCTCCCCTGCTCTTTGTTAT 60.280 44.000 0.34 0.00 0.00 1.89
2816 3138 3.914426 TCTCCCCTGCTCTTTGTTATC 57.086 47.619 0.00 0.00 0.00 1.75
2817 3139 2.168521 TCTCCCCTGCTCTTTGTTATCG 59.831 50.000 0.00 0.00 0.00 2.92
2818 3140 1.017387 CCCCTGCTCTTTGTTATCGC 58.983 55.000 0.00 0.00 0.00 4.58
2819 3141 1.017387 CCCTGCTCTTTGTTATCGCC 58.983 55.000 0.00 0.00 0.00 5.54
2820 3142 1.678728 CCCTGCTCTTTGTTATCGCCA 60.679 52.381 0.00 0.00 0.00 5.69
2821 3143 2.292267 CCTGCTCTTTGTTATCGCCAT 58.708 47.619 0.00 0.00 0.00 4.40
2822 3144 2.032550 CCTGCTCTTTGTTATCGCCATG 59.967 50.000 0.00 0.00 0.00 3.66
2823 3145 2.016318 TGCTCTTTGTTATCGCCATGG 58.984 47.619 7.63 7.63 0.00 3.66
2824 3146 2.288666 GCTCTTTGTTATCGCCATGGA 58.711 47.619 18.40 0.00 0.00 3.41
2825 3147 2.880890 GCTCTTTGTTATCGCCATGGAT 59.119 45.455 18.40 3.10 0.00 3.41
2826 3148 4.065088 GCTCTTTGTTATCGCCATGGATA 58.935 43.478 18.40 1.93 0.00 2.59
2827 3149 4.697352 GCTCTTTGTTATCGCCATGGATAT 59.303 41.667 18.40 10.26 0.00 1.63
2828 3150 5.163814 GCTCTTTGTTATCGCCATGGATATC 60.164 44.000 18.40 5.32 0.00 1.63
2829 3151 5.245531 TCTTTGTTATCGCCATGGATATCC 58.754 41.667 18.40 15.39 0.00 2.59
2830 3152 4.908601 TTGTTATCGCCATGGATATCCT 57.091 40.909 22.35 5.66 36.82 3.24
2831 3153 4.206477 TGTTATCGCCATGGATATCCTG 57.794 45.455 22.35 16.43 36.82 3.86
2832 3154 3.837731 TGTTATCGCCATGGATATCCTGA 59.162 43.478 22.35 12.22 36.82 3.86
2833 3155 4.184629 GTTATCGCCATGGATATCCTGAC 58.815 47.826 22.35 9.77 36.82 3.51
2834 3156 1.715785 TCGCCATGGATATCCTGACA 58.284 50.000 22.35 2.47 36.82 3.58
2835 3157 2.259917 TCGCCATGGATATCCTGACAT 58.740 47.619 22.35 4.93 36.82 3.06
2836 3158 2.234661 TCGCCATGGATATCCTGACATC 59.765 50.000 22.35 6.33 36.82 3.06
2837 3159 2.027837 CGCCATGGATATCCTGACATCA 60.028 50.000 22.35 0.53 36.82 3.07
2838 3160 3.557686 CGCCATGGATATCCTGACATCAA 60.558 47.826 22.35 0.00 36.82 2.57
2839 3161 4.597004 GCCATGGATATCCTGACATCAAT 58.403 43.478 22.35 2.33 36.82 2.57
2840 3162 4.639310 GCCATGGATATCCTGACATCAATC 59.361 45.833 22.35 0.00 36.82 2.67
2841 3163 4.874396 CCATGGATATCCTGACATCAATCG 59.126 45.833 22.35 0.00 36.82 3.34
2842 3164 5.485620 CATGGATATCCTGACATCAATCGT 58.514 41.667 22.35 0.00 36.82 3.73
2843 3165 5.139435 TGGATATCCTGACATCAATCGTC 57.861 43.478 22.35 0.00 36.82 4.20
2844 3166 4.835056 TGGATATCCTGACATCAATCGTCT 59.165 41.667 22.35 0.00 36.82 4.18
2845 3167 5.047731 TGGATATCCTGACATCAATCGTCTC 60.048 44.000 22.35 0.00 36.82 3.36
2846 3168 5.047731 GGATATCCTGACATCAATCGTCTCA 60.048 44.000 14.97 0.00 34.37 3.27
2847 3169 4.743057 ATCCTGACATCAATCGTCTCAA 57.257 40.909 0.00 0.00 34.37 3.02
2848 3170 4.535526 TCCTGACATCAATCGTCTCAAA 57.464 40.909 0.00 0.00 34.37 2.69
2849 3171 4.893608 TCCTGACATCAATCGTCTCAAAA 58.106 39.130 0.00 0.00 34.37 2.44
2850 3172 4.931601 TCCTGACATCAATCGTCTCAAAAG 59.068 41.667 0.00 0.00 34.37 2.27
2851 3173 4.436584 CCTGACATCAATCGTCTCAAAAGC 60.437 45.833 0.00 0.00 34.37 3.51
2852 3174 3.436704 TGACATCAATCGTCTCAAAAGCC 59.563 43.478 0.00 0.00 34.37 4.35
2853 3175 2.749621 ACATCAATCGTCTCAAAAGCCC 59.250 45.455 0.00 0.00 0.00 5.19
2854 3176 2.559698 TCAATCGTCTCAAAAGCCCA 57.440 45.000 0.00 0.00 0.00 5.36
2855 3177 2.426522 TCAATCGTCTCAAAAGCCCAG 58.573 47.619 0.00 0.00 0.00 4.45
2856 3178 1.470098 CAATCGTCTCAAAAGCCCAGG 59.530 52.381 0.00 0.00 0.00 4.45
2857 3179 0.984230 ATCGTCTCAAAAGCCCAGGA 59.016 50.000 0.00 0.00 0.00 3.86
2858 3180 0.321671 TCGTCTCAAAAGCCCAGGAG 59.678 55.000 0.00 0.00 0.00 3.69
2859 3181 0.674895 CGTCTCAAAAGCCCAGGAGG 60.675 60.000 0.00 0.00 39.47 4.30
2860 3182 0.402121 GTCTCAAAAGCCCAGGAGGT 59.598 55.000 0.00 0.00 38.26 3.85
2861 3183 0.401738 TCTCAAAAGCCCAGGAGGTG 59.598 55.000 0.00 0.00 38.26 4.00
2862 3184 0.401738 CTCAAAAGCCCAGGAGGTGA 59.598 55.000 0.00 0.00 38.26 4.02
2863 3185 0.401738 TCAAAAGCCCAGGAGGTGAG 59.598 55.000 0.00 0.00 38.26 3.51
2864 3186 1.075659 AAAAGCCCAGGAGGTGAGC 59.924 57.895 0.00 0.00 38.26 4.26
2865 3187 2.754664 AAAAGCCCAGGAGGTGAGCG 62.755 60.000 0.00 0.00 38.26 5.03
2867 3189 4.459089 GCCCAGGAGGTGAGCGTC 62.459 72.222 0.00 0.00 38.26 5.19
2868 3190 3.775654 CCCAGGAGGTGAGCGTCC 61.776 72.222 0.00 0.00 46.89 4.79
2873 3195 2.581074 GGAGGTGAGCGTCCTTAGT 58.419 57.895 0.00 0.00 44.08 2.24
2874 3196 1.760192 GGAGGTGAGCGTCCTTAGTA 58.240 55.000 0.00 0.00 44.08 1.82
2875 3197 2.097825 GGAGGTGAGCGTCCTTAGTAA 58.902 52.381 0.00 0.00 44.08 2.24
2876 3198 2.099427 GGAGGTGAGCGTCCTTAGTAAG 59.901 54.545 2.65 2.65 44.08 2.34
2877 3199 3.015327 GAGGTGAGCGTCCTTAGTAAGA 58.985 50.000 11.66 0.00 35.20 2.10
2878 3200 3.633065 GAGGTGAGCGTCCTTAGTAAGAT 59.367 47.826 11.66 0.00 35.20 2.40
2879 3201 3.381908 AGGTGAGCGTCCTTAGTAAGATG 59.618 47.826 11.66 4.70 30.18 2.90
2880 3202 3.117046 GTGAGCGTCCTTAGTAAGATGC 58.883 50.000 11.66 13.12 0.00 3.91
2881 3203 2.100916 TGAGCGTCCTTAGTAAGATGCC 59.899 50.000 11.66 8.81 0.00 4.40
2882 3204 2.100916 GAGCGTCCTTAGTAAGATGCCA 59.899 50.000 11.66 0.00 0.00 4.92
2883 3205 2.101582 AGCGTCCTTAGTAAGATGCCAG 59.898 50.000 11.66 0.00 0.00 4.85
2884 3206 2.803492 GCGTCCTTAGTAAGATGCCAGG 60.803 54.545 11.66 0.00 0.00 4.45
2885 3207 2.803492 CGTCCTTAGTAAGATGCCAGGC 60.803 54.545 11.66 3.66 0.00 4.85
2886 3208 2.436173 GTCCTTAGTAAGATGCCAGGCT 59.564 50.000 14.15 0.00 0.00 4.58
2887 3209 2.435805 TCCTTAGTAAGATGCCAGGCTG 59.564 50.000 14.15 7.75 0.00 4.85
2888 3210 2.216898 CTTAGTAAGATGCCAGGCTGC 58.783 52.381 14.15 5.45 0.00 5.25
2889 3211 1.500474 TAGTAAGATGCCAGGCTGCT 58.500 50.000 14.15 6.91 0.00 4.24
2890 3212 0.179936 AGTAAGATGCCAGGCTGCTC 59.820 55.000 14.15 7.05 0.00 4.26
2891 3213 0.817229 GTAAGATGCCAGGCTGCTCC 60.817 60.000 14.15 0.00 0.00 4.70
2892 3214 1.987807 TAAGATGCCAGGCTGCTCCC 61.988 60.000 14.15 0.00 34.51 4.30
2893 3215 4.891037 GATGCCAGGCTGCTCCCC 62.891 72.222 14.15 0.00 34.51 4.81
2897 3219 4.559063 CCAGGCTGCTCCCCGATG 62.559 72.222 9.56 0.00 34.51 3.84
2900 3222 4.802051 GGCTGCTCCCCGATGCAA 62.802 66.667 0.00 0.00 38.81 4.08
2901 3223 2.751436 GCTGCTCCCCGATGCAAA 60.751 61.111 0.00 0.00 38.81 3.68
2902 3224 2.768492 GCTGCTCCCCGATGCAAAG 61.768 63.158 0.00 0.00 38.81 2.77
2903 3225 2.045045 TGCTCCCCGATGCAAAGG 60.045 61.111 0.00 0.00 36.15 3.11
2904 3226 2.272146 GCTCCCCGATGCAAAGGA 59.728 61.111 11.88 5.00 0.00 3.36
2905 3227 1.152881 GCTCCCCGATGCAAAGGAT 60.153 57.895 11.88 0.00 0.00 3.24
2906 3228 0.753111 GCTCCCCGATGCAAAGGATT 60.753 55.000 11.88 0.00 0.00 3.01
2907 3229 1.767759 CTCCCCGATGCAAAGGATTT 58.232 50.000 11.88 0.00 40.26 2.17
2908 3230 1.678101 CTCCCCGATGCAAAGGATTTC 59.322 52.381 11.88 0.00 35.03 2.17
2909 3231 0.381801 CCCCGATGCAAAGGATTTCG 59.618 55.000 11.88 4.62 35.03 3.46
2910 3232 1.378531 CCCGATGCAAAGGATTTCGA 58.621 50.000 11.88 0.00 35.03 3.71
2911 3233 1.949525 CCCGATGCAAAGGATTTCGAT 59.050 47.619 11.88 0.00 35.03 3.59
2912 3234 3.138304 CCCGATGCAAAGGATTTCGATA 58.862 45.455 11.88 0.00 35.03 2.92
2913 3235 3.753272 CCCGATGCAAAGGATTTCGATAT 59.247 43.478 11.88 0.00 35.03 1.63
2914 3236 4.935205 CCCGATGCAAAGGATTTCGATATA 59.065 41.667 11.88 0.00 35.03 0.86
2915 3237 5.163854 CCCGATGCAAAGGATTTCGATATAC 60.164 44.000 11.88 0.00 35.03 1.47
2916 3238 5.444613 CCGATGCAAAGGATTTCGATATACG 60.445 44.000 5.25 0.00 35.03 3.06
2917 3239 4.725556 TGCAAAGGATTTCGATATACGC 57.274 40.909 0.00 0.00 35.03 4.42
2918 3240 4.377021 TGCAAAGGATTTCGATATACGCT 58.623 39.130 0.00 0.00 35.03 5.07
2919 3241 4.211164 TGCAAAGGATTTCGATATACGCTG 59.789 41.667 0.00 0.00 35.03 5.18
2920 3242 4.447724 GCAAAGGATTTCGATATACGCTGA 59.552 41.667 6.63 0.00 35.03 4.26
2921 3243 5.120830 GCAAAGGATTTCGATATACGCTGAT 59.879 40.000 6.63 0.00 35.03 2.90
2922 3244 6.528826 CAAAGGATTTCGATATACGCTGATG 58.471 40.000 0.00 0.00 35.03 3.07
2923 3245 5.644977 AGGATTTCGATATACGCTGATGA 57.355 39.130 0.00 0.00 42.26 2.92
2924 3246 5.403246 AGGATTTCGATATACGCTGATGAC 58.597 41.667 0.00 0.00 42.26 3.06
2925 3247 4.263209 GGATTTCGATATACGCTGATGACG 59.737 45.833 0.00 0.00 42.26 4.35
2927 3249 3.183237 TCGATATACGCTGATGACGTG 57.817 47.619 0.00 0.00 44.79 4.49
2928 3250 2.095919 TCGATATACGCTGATGACGTGG 60.096 50.000 0.00 0.00 44.79 4.94
2929 3251 2.350484 CGATATACGCTGATGACGTGGT 60.350 50.000 0.00 0.00 44.79 4.16
2930 3252 2.485266 TATACGCTGATGACGTGGTG 57.515 50.000 0.00 0.00 44.79 4.17
2931 3253 0.806102 ATACGCTGATGACGTGGTGC 60.806 55.000 0.00 0.00 44.79 5.01
2932 3254 1.873270 TACGCTGATGACGTGGTGCT 61.873 55.000 0.00 0.00 44.79 4.40
2933 3255 2.733671 CGCTGATGACGTGGTGCTG 61.734 63.158 0.00 0.00 0.00 4.41
2934 3256 1.669115 GCTGATGACGTGGTGCTGT 60.669 57.895 0.00 0.00 0.00 4.40
2935 3257 1.230635 GCTGATGACGTGGTGCTGTT 61.231 55.000 0.00 0.00 0.00 3.16
2936 3258 0.792640 CTGATGACGTGGTGCTGTTC 59.207 55.000 0.00 0.00 0.00 3.18
2937 3259 0.105778 TGATGACGTGGTGCTGTTCA 59.894 50.000 0.00 0.00 0.00 3.18
2938 3260 1.270785 TGATGACGTGGTGCTGTTCAT 60.271 47.619 0.00 0.00 0.00 2.57
2939 3261 1.394917 GATGACGTGGTGCTGTTCATC 59.605 52.381 0.00 0.00 0.00 2.92
2940 3262 0.602638 TGACGTGGTGCTGTTCATCC 60.603 55.000 0.00 0.00 0.00 3.51
2941 3263 1.626654 GACGTGGTGCTGTTCATCCG 61.627 60.000 0.00 0.00 0.00 4.18
2942 3264 2.390599 CGTGGTGCTGTTCATCCGG 61.391 63.158 0.00 0.00 0.00 5.14
2943 3265 2.359850 TGGTGCTGTTCATCCGGC 60.360 61.111 0.00 0.00 0.00 6.13
2944 3266 3.134127 GGTGCTGTTCATCCGGCC 61.134 66.667 0.00 0.00 0.00 6.13
2945 3267 3.134127 GTGCTGTTCATCCGGCCC 61.134 66.667 0.00 0.00 0.00 5.80
2946 3268 3.329889 TGCTGTTCATCCGGCCCT 61.330 61.111 0.00 0.00 0.00 5.19
2947 3269 2.514824 GCTGTTCATCCGGCCCTC 60.515 66.667 0.00 0.00 0.00 4.30
2948 3270 2.190578 CTGTTCATCCGGCCCTCC 59.809 66.667 0.00 0.00 0.00 4.30
2949 3271 2.285368 TGTTCATCCGGCCCTCCT 60.285 61.111 0.00 0.00 0.00 3.69
2950 3272 1.915078 CTGTTCATCCGGCCCTCCTT 61.915 60.000 0.00 0.00 0.00 3.36
2951 3273 1.452108 GTTCATCCGGCCCTCCTTG 60.452 63.158 0.00 0.00 0.00 3.61
2952 3274 3.344137 TTCATCCGGCCCTCCTTGC 62.344 63.158 0.00 0.00 0.00 4.01
2953 3275 4.883354 CATCCGGCCCTCCTTGCC 62.883 72.222 0.00 0.00 45.70 4.52
2958 3280 4.432741 GGCCCTCCTTGCCTGACC 62.433 72.222 0.00 0.00 45.70 4.02
2959 3281 3.334054 GCCCTCCTTGCCTGACCT 61.334 66.667 0.00 0.00 0.00 3.85
2960 3282 2.993853 CCCTCCTTGCCTGACCTC 59.006 66.667 0.00 0.00 0.00 3.85
2961 3283 2.674220 CCCTCCTTGCCTGACCTCC 61.674 68.421 0.00 0.00 0.00 4.30
2962 3284 2.581354 CTCCTTGCCTGACCTCCG 59.419 66.667 0.00 0.00 0.00 4.63
2963 3285 3.003173 TCCTTGCCTGACCTCCGG 61.003 66.667 0.00 0.00 0.00 5.14
2964 3286 3.322466 CCTTGCCTGACCTCCGGT 61.322 66.667 0.00 0.00 39.44 5.28
2965 3287 2.750350 CTTGCCTGACCTCCGGTT 59.250 61.111 0.00 0.00 35.25 4.44
2966 3288 1.376037 CTTGCCTGACCTCCGGTTC 60.376 63.158 0.00 0.00 35.25 3.62
2967 3289 3.234630 TTGCCTGACCTCCGGTTCG 62.235 63.158 0.00 0.00 35.25 3.95
2968 3290 3.692406 GCCTGACCTCCGGTTCGT 61.692 66.667 0.00 0.00 35.25 3.85
2969 3291 2.572284 CCTGACCTCCGGTTCGTC 59.428 66.667 0.00 6.36 35.25 4.20
2970 3292 2.572284 CTGACCTCCGGTTCGTCC 59.428 66.667 0.00 0.00 35.25 4.79
2971 3293 2.203523 TGACCTCCGGTTCGTCCA 60.204 61.111 0.00 0.00 35.25 4.02
2972 3294 1.812686 CTGACCTCCGGTTCGTCCAA 61.813 60.000 0.00 0.00 35.25 3.53
2973 3295 1.080025 GACCTCCGGTTCGTCCAAG 60.080 63.158 0.00 0.00 35.25 3.61
2974 3296 1.813728 GACCTCCGGTTCGTCCAAGT 61.814 60.000 0.00 0.00 35.25 3.16
2975 3297 1.374252 CCTCCGGTTCGTCCAAGTG 60.374 63.158 0.00 0.00 35.57 3.16
2976 3298 1.374252 CTCCGGTTCGTCCAAGTGG 60.374 63.158 0.00 0.00 35.57 4.00
2977 3299 3.047877 CCGGTTCGTCCAAGTGGC 61.048 66.667 0.00 0.00 35.57 5.01
2978 3300 3.047877 CGGTTCGTCCAAGTGGCC 61.048 66.667 0.00 0.00 35.57 5.36
2979 3301 2.112297 GGTTCGTCCAAGTGGCCA 59.888 61.111 0.00 0.00 35.97 5.36
2980 3302 1.303317 GGTTCGTCCAAGTGGCCAT 60.303 57.895 9.72 0.00 35.97 4.40
2981 3303 1.586154 GGTTCGTCCAAGTGGCCATG 61.586 60.000 9.72 3.41 35.97 3.66
2982 3304 1.971167 TTCGTCCAAGTGGCCATGC 60.971 57.895 9.72 0.00 34.44 4.06
2983 3305 2.360350 CGTCCAAGTGGCCATGCT 60.360 61.111 9.72 0.00 34.44 3.79
2984 3306 2.401766 CGTCCAAGTGGCCATGCTC 61.402 63.158 9.72 0.00 34.44 4.26
2985 3307 1.303561 GTCCAAGTGGCCATGCTCA 60.304 57.895 9.72 0.00 34.44 4.26
2986 3308 0.682209 GTCCAAGTGGCCATGCTCAT 60.682 55.000 9.72 0.00 34.44 2.90
2987 3309 0.918258 TCCAAGTGGCCATGCTCATA 59.082 50.000 9.72 0.00 34.44 2.15
2988 3310 1.496001 TCCAAGTGGCCATGCTCATAT 59.504 47.619 9.72 0.00 34.44 1.78
2989 3311 2.091720 TCCAAGTGGCCATGCTCATATT 60.092 45.455 9.72 0.00 34.44 1.28
2990 3312 2.696707 CCAAGTGGCCATGCTCATATTT 59.303 45.455 9.72 0.00 0.00 1.40
2991 3313 3.491964 CCAAGTGGCCATGCTCATATTTG 60.492 47.826 9.72 3.15 0.00 2.32
2992 3314 2.313317 AGTGGCCATGCTCATATTTGG 58.687 47.619 9.72 0.00 0.00 3.28
2993 3315 2.091720 AGTGGCCATGCTCATATTTGGA 60.092 45.455 9.72 0.00 0.00 3.53
2994 3316 2.694628 GTGGCCATGCTCATATTTGGAA 59.305 45.455 9.72 0.00 0.00 3.53
2995 3317 2.960384 TGGCCATGCTCATATTTGGAAG 59.040 45.455 0.00 0.00 0.00 3.46
2996 3318 3.225104 GGCCATGCTCATATTTGGAAGA 58.775 45.455 0.00 0.00 0.00 2.87
2997 3319 3.255149 GGCCATGCTCATATTTGGAAGAG 59.745 47.826 0.00 0.00 0.00 2.85
3004 3326 5.943706 CTCATATTTGGAAGAGCATCAGG 57.056 43.478 0.00 0.00 37.82 3.86
3005 3327 4.722220 TCATATTTGGAAGAGCATCAGGG 58.278 43.478 0.00 0.00 37.82 4.45
3006 3328 1.772836 ATTTGGAAGAGCATCAGGGC 58.227 50.000 0.00 0.00 37.82 5.19
3008 3330 1.583556 TTGGAAGAGCATCAGGGCTA 58.416 50.000 0.00 0.00 45.99 3.93
3009 3331 0.833287 TGGAAGAGCATCAGGGCTAC 59.167 55.000 0.00 0.00 45.99 3.58
3010 3332 0.833287 GGAAGAGCATCAGGGCTACA 59.167 55.000 0.00 0.00 45.99 2.74
3011 3333 1.210478 GGAAGAGCATCAGGGCTACAA 59.790 52.381 0.00 0.00 45.99 2.41
3012 3334 2.356125 GGAAGAGCATCAGGGCTACAAA 60.356 50.000 0.00 0.00 45.99 2.83
3013 3335 3.549794 GAAGAGCATCAGGGCTACAAAT 58.450 45.455 0.00 0.00 45.99 2.32
3014 3336 4.444876 GGAAGAGCATCAGGGCTACAAATA 60.445 45.833 0.00 0.00 45.99 1.40
3015 3337 4.778213 AGAGCATCAGGGCTACAAATAA 57.222 40.909 0.00 0.00 45.99 1.40
3016 3338 5.116084 AGAGCATCAGGGCTACAAATAAA 57.884 39.130 0.00 0.00 45.99 1.40
3017 3339 4.884164 AGAGCATCAGGGCTACAAATAAAC 59.116 41.667 0.00 0.00 45.99 2.01
3018 3340 4.860022 AGCATCAGGGCTACAAATAAACT 58.140 39.130 0.00 0.00 43.70 2.66
3019 3341 5.264395 AGCATCAGGGCTACAAATAAACTT 58.736 37.500 0.00 0.00 43.70 2.66
3020 3342 5.716703 AGCATCAGGGCTACAAATAAACTTT 59.283 36.000 0.00 0.00 43.70 2.66
3021 3343 5.807011 GCATCAGGGCTACAAATAAACTTTG 59.193 40.000 0.00 0.00 35.64 2.77
3022 3344 5.385509 TCAGGGCTACAAATAAACTTTGC 57.614 39.130 0.00 0.00 32.93 3.68
3023 3345 4.219725 TCAGGGCTACAAATAAACTTTGCC 59.780 41.667 0.00 0.00 38.49 4.52
3024 3346 4.021544 CAGGGCTACAAATAAACTTTGCCA 60.022 41.667 0.00 0.00 40.72 4.92
3025 3347 4.591072 AGGGCTACAAATAAACTTTGCCAA 59.409 37.500 0.00 0.00 40.72 4.52
3026 3348 5.071115 AGGGCTACAAATAAACTTTGCCAAA 59.929 36.000 0.00 0.00 40.72 3.28
3027 3349 5.937540 GGGCTACAAATAAACTTTGCCAAAT 59.062 36.000 0.00 0.00 40.72 2.32
3028 3350 6.092122 GGGCTACAAATAAACTTTGCCAAATC 59.908 38.462 0.00 0.00 40.72 2.17
3029 3351 6.873605 GGCTACAAATAAACTTTGCCAAATCT 59.126 34.615 0.00 0.00 38.99 2.40
3030 3352 7.148590 GGCTACAAATAAACTTTGCCAAATCTG 60.149 37.037 0.00 0.00 38.99 2.90
3031 3353 6.544038 ACAAATAAACTTTGCCAAATCTGC 57.456 33.333 0.00 0.00 32.93 4.26
3032 3354 6.290605 ACAAATAAACTTTGCCAAATCTGCT 58.709 32.000 0.00 0.00 32.93 4.24
3033 3355 6.203338 ACAAATAAACTTTGCCAAATCTGCTG 59.797 34.615 0.00 0.00 32.93 4.41
3034 3356 2.159327 AACTTTGCCAAATCTGCTGC 57.841 45.000 0.00 0.00 0.00 5.25
3035 3357 0.038892 ACTTTGCCAAATCTGCTGCG 60.039 50.000 0.00 0.00 0.00 5.18
3036 3358 0.241749 CTTTGCCAAATCTGCTGCGA 59.758 50.000 0.00 0.00 0.00 5.10
3037 3359 0.889994 TTTGCCAAATCTGCTGCGAT 59.110 45.000 0.00 0.00 0.00 4.58
3038 3360 0.889994 TTGCCAAATCTGCTGCGATT 59.110 45.000 11.89 11.89 35.23 3.34
3039 3361 1.748950 TGCCAAATCTGCTGCGATTA 58.251 45.000 16.06 3.11 33.47 1.75
3040 3362 2.300433 TGCCAAATCTGCTGCGATTAT 58.700 42.857 16.06 7.57 33.47 1.28
3041 3363 2.033675 TGCCAAATCTGCTGCGATTATG 59.966 45.455 16.06 15.05 33.47 1.90
3042 3364 2.291465 GCCAAATCTGCTGCGATTATGA 59.709 45.455 16.06 0.60 33.47 2.15
3043 3365 3.057736 GCCAAATCTGCTGCGATTATGAT 60.058 43.478 16.06 3.11 33.47 2.45
3044 3366 4.720090 CCAAATCTGCTGCGATTATGATC 58.280 43.478 16.06 0.00 33.47 2.92
3045 3367 4.379186 CCAAATCTGCTGCGATTATGATCC 60.379 45.833 16.06 0.00 33.47 3.36
3046 3368 2.070262 TCTGCTGCGATTATGATCCG 57.930 50.000 0.00 0.00 0.00 4.18
3047 3369 1.613437 TCTGCTGCGATTATGATCCGA 59.387 47.619 0.00 0.00 0.00 4.55
3048 3370 1.991264 CTGCTGCGATTATGATCCGAG 59.009 52.381 0.00 0.00 0.00 4.63
3049 3371 1.613437 TGCTGCGATTATGATCCGAGA 59.387 47.619 0.00 0.00 0.00 4.04
3050 3372 2.035832 TGCTGCGATTATGATCCGAGAA 59.964 45.455 0.00 0.00 0.00 2.87
3051 3373 2.665537 GCTGCGATTATGATCCGAGAAG 59.334 50.000 0.00 0.00 0.00 2.85
3052 3374 3.612717 GCTGCGATTATGATCCGAGAAGA 60.613 47.826 0.00 0.00 0.00 2.87
3053 3375 4.550422 CTGCGATTATGATCCGAGAAGAA 58.450 43.478 0.00 0.00 0.00 2.52
3054 3376 4.550422 TGCGATTATGATCCGAGAAGAAG 58.450 43.478 0.00 0.00 0.00 2.85
3055 3377 4.278419 TGCGATTATGATCCGAGAAGAAGA 59.722 41.667 0.00 0.00 0.00 2.87
3056 3378 5.047731 TGCGATTATGATCCGAGAAGAAGAT 60.048 40.000 0.00 0.00 0.00 2.40
3057 3379 5.288232 GCGATTATGATCCGAGAAGAAGATG 59.712 44.000 0.00 0.00 0.00 2.90
3058 3380 5.804473 CGATTATGATCCGAGAAGAAGATGG 59.196 44.000 0.00 0.00 0.00 3.51
3059 3381 6.349694 CGATTATGATCCGAGAAGAAGATGGA 60.350 42.308 0.00 0.00 0.00 3.41
3060 3382 4.870123 ATGATCCGAGAAGAAGATGGAG 57.130 45.455 0.00 0.00 31.10 3.86
3061 3383 3.903467 TGATCCGAGAAGAAGATGGAGA 58.097 45.455 0.00 0.00 31.10 3.71
3062 3384 3.634448 TGATCCGAGAAGAAGATGGAGAC 59.366 47.826 0.00 0.00 31.10 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
210 243 0.179048 CCACCGCCAGCTATTGATCA 60.179 55.000 0.00 0.00 0.00 2.92
215 248 2.438434 GTGCCACCGCCAGCTATT 60.438 61.111 0.00 0.00 0.00 1.73
738 1021 7.201785 CCGGCTTGGTATTTTAGAACATACAAT 60.202 37.037 0.00 0.00 0.00 2.71
762 1045 1.227823 TGTGCAACTTCCAGGACCG 60.228 57.895 0.00 0.00 38.04 4.79
869 1152 1.552792 GTACTGGAGGAAGAAGCAGCT 59.447 52.381 0.00 0.00 0.00 4.24
943 1226 5.360999 AGCTATACTGTGCAGACTAATCACA 59.639 40.000 6.17 0.00 38.27 3.58
1338 1622 6.909550 TTGCTTACCACCAAAAACATATCT 57.090 33.333 0.00 0.00 0.00 1.98
1924 2239 2.380064 TGCCTTCTTCAACCCATTGT 57.620 45.000 0.00 0.00 37.11 2.71
2006 2321 6.071320 AGAAGGGAAGCTCTTACACAAATTT 58.929 36.000 0.00 0.00 0.00 1.82
2225 2540 5.412594 GCAAACCTGATAACAGAGTCATTCA 59.587 40.000 0.79 0.00 46.03 2.57
2234 2549 6.757897 TCCATAAAGCAAACCTGATAACAG 57.242 37.500 0.00 0.00 43.12 3.16
2281 2596 7.195646 TGTAAGAAAACAAAATGCTGACAGAG 58.804 34.615 6.65 0.00 0.00 3.35
2396 2714 3.791789 GCAGAGAAGTAGAGATGCAGTCG 60.792 52.174 0.00 0.00 33.92 4.18
2662 2984 8.947115 AGTTTAATCAGTAAGCAACCTGATTAC 58.053 33.333 21.62 16.94 46.28 1.89
2739 3061 0.755327 AATTTAGGCCCCGCATGTCC 60.755 55.000 0.00 0.00 0.00 4.02
2744 3066 1.391157 GCATGAATTTAGGCCCCGCA 61.391 55.000 0.00 0.00 0.00 5.69
2745 3067 1.363807 GCATGAATTTAGGCCCCGC 59.636 57.895 0.00 0.00 0.00 6.13
2746 3068 0.385390 GTGCATGAATTTAGGCCCCG 59.615 55.000 0.00 0.00 0.00 5.73
2747 3069 0.385390 CGTGCATGAATTTAGGCCCC 59.615 55.000 0.00 0.00 0.00 5.80
2748 3070 0.249031 GCGTGCATGAATTTAGGCCC 60.249 55.000 10.93 0.00 0.00 5.80
2749 3071 0.740737 AGCGTGCATGAATTTAGGCC 59.259 50.000 10.93 0.00 0.00 5.19
2750 3072 1.401552 TGAGCGTGCATGAATTTAGGC 59.598 47.619 10.93 0.00 0.00 3.93
2751 3073 3.374988 TCTTGAGCGTGCATGAATTTAGG 59.625 43.478 10.93 0.00 0.00 2.69
2752 3074 4.604843 TCTTGAGCGTGCATGAATTTAG 57.395 40.909 10.93 0.00 0.00 1.85
2753 3075 4.877823 AGATCTTGAGCGTGCATGAATTTA 59.122 37.500 10.93 0.00 0.00 1.40
2754 3076 3.693085 AGATCTTGAGCGTGCATGAATTT 59.307 39.130 10.93 0.00 0.00 1.82
2755 3077 3.276857 AGATCTTGAGCGTGCATGAATT 58.723 40.909 10.93 0.00 0.00 2.17
2756 3078 2.871022 GAGATCTTGAGCGTGCATGAAT 59.129 45.455 10.93 0.00 0.00 2.57
2757 3079 2.274437 GAGATCTTGAGCGTGCATGAA 58.726 47.619 10.93 0.00 0.00 2.57
2758 3080 1.205417 TGAGATCTTGAGCGTGCATGA 59.795 47.619 10.93 0.00 0.00 3.07
2759 3081 1.648504 TGAGATCTTGAGCGTGCATG 58.351 50.000 0.09 0.09 0.00 4.06
2760 3082 2.391616 TTGAGATCTTGAGCGTGCAT 57.608 45.000 0.00 0.00 0.00 3.96
2761 3083 1.800586 GTTTGAGATCTTGAGCGTGCA 59.199 47.619 0.00 0.00 0.00 4.57
2762 3084 1.800586 TGTTTGAGATCTTGAGCGTGC 59.199 47.619 0.00 0.00 0.00 5.34
2763 3085 3.120408 CCTTGTTTGAGATCTTGAGCGTG 60.120 47.826 0.00 0.00 0.00 5.34
2764 3086 3.070018 CCTTGTTTGAGATCTTGAGCGT 58.930 45.455 0.00 0.00 0.00 5.07
2765 3087 2.159599 GCCTTGTTTGAGATCTTGAGCG 60.160 50.000 0.00 0.00 0.00 5.03
2766 3088 2.159599 CGCCTTGTTTGAGATCTTGAGC 60.160 50.000 0.00 0.00 0.00 4.26
2767 3089 3.124297 GTCGCCTTGTTTGAGATCTTGAG 59.876 47.826 0.00 0.00 0.00 3.02
2768 3090 3.067106 GTCGCCTTGTTTGAGATCTTGA 58.933 45.455 0.00 0.00 0.00 3.02
2769 3091 2.160417 GGTCGCCTTGTTTGAGATCTTG 59.840 50.000 0.00 0.00 0.00 3.02
2770 3092 2.427506 GGTCGCCTTGTTTGAGATCTT 58.572 47.619 0.00 0.00 0.00 2.40
2771 3093 1.339151 GGGTCGCCTTGTTTGAGATCT 60.339 52.381 0.00 0.00 0.00 2.75
2772 3094 1.087501 GGGTCGCCTTGTTTGAGATC 58.912 55.000 0.00 0.00 0.00 2.75
2773 3095 0.673644 CGGGTCGCCTTGTTTGAGAT 60.674 55.000 0.00 0.00 0.00 2.75
2774 3096 1.301401 CGGGTCGCCTTGTTTGAGA 60.301 57.895 0.00 0.00 0.00 3.27
2775 3097 0.673644 ATCGGGTCGCCTTGTTTGAG 60.674 55.000 0.00 0.00 0.00 3.02
2776 3098 0.609151 TATCGGGTCGCCTTGTTTGA 59.391 50.000 0.00 0.00 0.00 2.69
2777 3099 1.597663 GATATCGGGTCGCCTTGTTTG 59.402 52.381 0.00 0.00 0.00 2.93
2778 3100 1.485066 AGATATCGGGTCGCCTTGTTT 59.515 47.619 0.00 0.00 0.00 2.83
2779 3101 1.068741 GAGATATCGGGTCGCCTTGTT 59.931 52.381 0.00 0.00 0.00 2.83
2780 3102 0.674534 GAGATATCGGGTCGCCTTGT 59.325 55.000 0.00 0.00 0.00 3.16
2781 3103 0.038159 GGAGATATCGGGTCGCCTTG 60.038 60.000 0.00 0.00 33.38 3.61
2782 3104 1.186267 GGGAGATATCGGGTCGCCTT 61.186 60.000 0.00 0.00 36.04 4.35
2783 3105 1.606889 GGGAGATATCGGGTCGCCT 60.607 63.158 0.00 0.00 36.04 5.52
2784 3106 2.647158 GGGGAGATATCGGGTCGCC 61.647 68.421 9.80 9.80 36.29 5.54
2785 3107 1.606889 AGGGGAGATATCGGGTCGC 60.607 63.158 0.00 0.00 0.00 5.19
2786 3108 1.878656 GCAGGGGAGATATCGGGTCG 61.879 65.000 0.00 0.00 0.00 4.79
2787 3109 0.543174 AGCAGGGGAGATATCGGGTC 60.543 60.000 0.00 0.00 0.00 4.46
2788 3110 0.543174 GAGCAGGGGAGATATCGGGT 60.543 60.000 0.00 0.00 0.00 5.28
2789 3111 0.252012 AGAGCAGGGGAGATATCGGG 60.252 60.000 0.00 0.00 0.00 5.14
2790 3112 1.638529 AAGAGCAGGGGAGATATCGG 58.361 55.000 0.00 0.00 0.00 4.18
2791 3113 2.366916 ACAAAGAGCAGGGGAGATATCG 59.633 50.000 0.00 0.00 0.00 2.92
2792 3114 4.429854 AACAAAGAGCAGGGGAGATATC 57.570 45.455 0.00 0.00 0.00 1.63
2793 3115 5.279708 CGATAACAAAGAGCAGGGGAGATAT 60.280 44.000 0.00 0.00 0.00 1.63
2794 3116 4.039245 CGATAACAAAGAGCAGGGGAGATA 59.961 45.833 0.00 0.00 0.00 1.98
2795 3117 3.181461 CGATAACAAAGAGCAGGGGAGAT 60.181 47.826 0.00 0.00 0.00 2.75
2796 3118 2.168521 CGATAACAAAGAGCAGGGGAGA 59.831 50.000 0.00 0.00 0.00 3.71
2797 3119 2.555199 CGATAACAAAGAGCAGGGGAG 58.445 52.381 0.00 0.00 0.00 4.30
2798 3120 1.406887 GCGATAACAAAGAGCAGGGGA 60.407 52.381 0.00 0.00 0.00 4.81
2799 3121 1.017387 GCGATAACAAAGAGCAGGGG 58.983 55.000 0.00 0.00 0.00 4.79
2800 3122 1.017387 GGCGATAACAAAGAGCAGGG 58.983 55.000 0.00 0.00 0.00 4.45
2801 3123 1.737838 TGGCGATAACAAAGAGCAGG 58.262 50.000 0.00 0.00 0.00 4.85
2802 3124 2.032550 CCATGGCGATAACAAAGAGCAG 59.967 50.000 0.00 0.00 0.00 4.24
2803 3125 2.016318 CCATGGCGATAACAAAGAGCA 58.984 47.619 0.00 0.00 0.00 4.26
2804 3126 2.288666 TCCATGGCGATAACAAAGAGC 58.711 47.619 6.96 0.00 0.00 4.09
2805 3127 5.352569 GGATATCCATGGCGATAACAAAGAG 59.647 44.000 17.34 0.00 35.64 2.85
2806 3128 5.013079 AGGATATCCATGGCGATAACAAAGA 59.987 40.000 23.81 0.00 38.89 2.52
2807 3129 5.122869 CAGGATATCCATGGCGATAACAAAG 59.877 44.000 23.81 0.00 38.89 2.77
2808 3130 5.003160 CAGGATATCCATGGCGATAACAAA 58.997 41.667 23.81 0.00 38.89 2.83
2809 3131 4.285775 TCAGGATATCCATGGCGATAACAA 59.714 41.667 23.81 0.00 38.89 2.83
2810 3132 3.837731 TCAGGATATCCATGGCGATAACA 59.162 43.478 23.81 0.00 38.89 2.41
2811 3133 4.184629 GTCAGGATATCCATGGCGATAAC 58.815 47.826 23.81 8.16 38.89 1.89
2812 3134 3.837731 TGTCAGGATATCCATGGCGATAA 59.162 43.478 23.81 2.68 38.89 1.75
2813 3135 3.440127 TGTCAGGATATCCATGGCGATA 58.560 45.455 23.81 0.61 38.89 2.92
2814 3136 2.259917 TGTCAGGATATCCATGGCGAT 58.740 47.619 23.81 1.88 38.89 4.58
2815 3137 1.715785 TGTCAGGATATCCATGGCGA 58.284 50.000 23.81 8.81 38.89 5.54
2816 3138 2.027837 TGATGTCAGGATATCCATGGCG 60.028 50.000 23.81 6.66 38.89 5.69
2817 3139 3.708403 TGATGTCAGGATATCCATGGC 57.292 47.619 23.81 18.74 38.89 4.40
2818 3140 4.874396 CGATTGATGTCAGGATATCCATGG 59.126 45.833 23.81 4.97 38.89 3.66
2819 3141 5.485620 ACGATTGATGTCAGGATATCCATG 58.514 41.667 23.81 17.33 38.89 3.66
2820 3142 5.483231 AGACGATTGATGTCAGGATATCCAT 59.517 40.000 23.81 8.25 38.83 3.41
2821 3143 4.835056 AGACGATTGATGTCAGGATATCCA 59.165 41.667 23.81 3.07 38.83 3.41
2822 3144 5.047731 TGAGACGATTGATGTCAGGATATCC 60.048 44.000 14.41 14.41 38.83 2.59
2823 3145 6.018589 TGAGACGATTGATGTCAGGATATC 57.981 41.667 0.00 0.00 38.83 1.63
2824 3146 6.410942 TTGAGACGATTGATGTCAGGATAT 57.589 37.500 0.00 0.00 38.83 1.63
2825 3147 5.852282 TTGAGACGATTGATGTCAGGATA 57.148 39.130 0.00 0.00 38.83 2.59
2826 3148 4.743057 TTGAGACGATTGATGTCAGGAT 57.257 40.909 0.00 0.00 38.83 3.24
2827 3149 4.535526 TTTGAGACGATTGATGTCAGGA 57.464 40.909 0.00 0.00 38.83 3.86
2828 3150 4.436584 GCTTTTGAGACGATTGATGTCAGG 60.437 45.833 0.00 0.00 38.83 3.86
2829 3151 4.436584 GGCTTTTGAGACGATTGATGTCAG 60.437 45.833 0.00 0.00 38.83 3.51
2830 3152 3.436704 GGCTTTTGAGACGATTGATGTCA 59.563 43.478 0.00 0.00 38.83 3.58
2831 3153 3.181506 GGGCTTTTGAGACGATTGATGTC 60.182 47.826 0.00 0.00 36.60 3.06
2832 3154 2.749621 GGGCTTTTGAGACGATTGATGT 59.250 45.455 0.00 0.00 0.00 3.06
2833 3155 2.749076 TGGGCTTTTGAGACGATTGATG 59.251 45.455 0.00 0.00 0.00 3.07
2834 3156 3.012518 CTGGGCTTTTGAGACGATTGAT 58.987 45.455 0.00 0.00 0.00 2.57
2835 3157 2.426522 CTGGGCTTTTGAGACGATTGA 58.573 47.619 0.00 0.00 0.00 2.57
2836 3158 1.470098 CCTGGGCTTTTGAGACGATTG 59.530 52.381 0.00 0.00 0.00 2.67
2837 3159 1.351017 TCCTGGGCTTTTGAGACGATT 59.649 47.619 0.00 0.00 0.00 3.34
2838 3160 0.984230 TCCTGGGCTTTTGAGACGAT 59.016 50.000 0.00 0.00 0.00 3.73
2839 3161 0.321671 CTCCTGGGCTTTTGAGACGA 59.678 55.000 0.00 0.00 0.00 4.20
2840 3162 0.674895 CCTCCTGGGCTTTTGAGACG 60.675 60.000 0.00 0.00 0.00 4.18
2841 3163 0.402121 ACCTCCTGGGCTTTTGAGAC 59.598 55.000 0.00 0.00 39.10 3.36
2842 3164 0.401738 CACCTCCTGGGCTTTTGAGA 59.598 55.000 0.00 0.00 39.10 3.27
2843 3165 0.401738 TCACCTCCTGGGCTTTTGAG 59.598 55.000 0.00 0.00 39.10 3.02
2844 3166 0.401738 CTCACCTCCTGGGCTTTTGA 59.598 55.000 0.00 0.00 39.10 2.69
2845 3167 1.246737 GCTCACCTCCTGGGCTTTTG 61.247 60.000 0.00 0.00 44.00 2.44
2846 3168 1.075659 GCTCACCTCCTGGGCTTTT 59.924 57.895 0.00 0.00 44.00 2.27
2847 3169 2.759795 GCTCACCTCCTGGGCTTT 59.240 61.111 0.00 0.00 44.00 3.51
2848 3170 3.710722 CGCTCACCTCCTGGGCTT 61.711 66.667 0.00 0.00 45.39 4.35
2850 3172 4.459089 GACGCTCACCTCCTGGGC 62.459 72.222 0.00 0.00 43.91 5.36
2851 3173 3.775654 GGACGCTCACCTCCTGGG 61.776 72.222 0.00 0.00 41.89 4.45
2852 3174 0.970937 TAAGGACGCTCACCTCCTGG 60.971 60.000 0.00 0.00 36.97 4.45
2853 3175 0.457851 CTAAGGACGCTCACCTCCTG 59.542 60.000 0.00 0.00 36.97 3.86
2854 3176 0.039911 ACTAAGGACGCTCACCTCCT 59.960 55.000 0.00 0.00 38.67 3.69
2855 3177 1.760192 TACTAAGGACGCTCACCTCC 58.240 55.000 0.00 0.00 36.67 4.30
2856 3178 3.015327 TCTTACTAAGGACGCTCACCTC 58.985 50.000 0.00 0.00 36.67 3.85
2857 3179 3.083122 TCTTACTAAGGACGCTCACCT 57.917 47.619 0.00 0.00 39.69 4.00
2858 3180 3.707793 CATCTTACTAAGGACGCTCACC 58.292 50.000 0.00 0.00 0.00 4.02
2859 3181 3.117046 GCATCTTACTAAGGACGCTCAC 58.883 50.000 0.00 0.00 0.00 3.51
2860 3182 2.100916 GGCATCTTACTAAGGACGCTCA 59.899 50.000 0.00 0.00 0.00 4.26
2861 3183 2.100916 TGGCATCTTACTAAGGACGCTC 59.899 50.000 0.00 0.00 0.00 5.03
2862 3184 2.101582 CTGGCATCTTACTAAGGACGCT 59.898 50.000 0.00 0.00 0.00 5.07
2863 3185 2.474816 CTGGCATCTTACTAAGGACGC 58.525 52.381 0.00 0.00 0.00 5.19
2864 3186 2.803492 GCCTGGCATCTTACTAAGGACG 60.803 54.545 15.17 0.00 0.00 4.79
2865 3187 2.436173 AGCCTGGCATCTTACTAAGGAC 59.564 50.000 22.65 0.00 0.00 3.85
2866 3188 2.435805 CAGCCTGGCATCTTACTAAGGA 59.564 50.000 22.65 0.00 0.00 3.36
2867 3189 2.843701 CAGCCTGGCATCTTACTAAGG 58.156 52.381 22.65 0.00 0.00 2.69
2868 3190 2.158842 AGCAGCCTGGCATCTTACTAAG 60.159 50.000 22.65 0.00 35.83 2.18
2869 3191 1.839994 AGCAGCCTGGCATCTTACTAA 59.160 47.619 22.65 0.00 35.83 2.24
2870 3192 1.414181 GAGCAGCCTGGCATCTTACTA 59.586 52.381 22.65 0.00 35.83 1.82
2871 3193 0.179936 GAGCAGCCTGGCATCTTACT 59.820 55.000 22.65 8.08 35.83 2.24
2872 3194 0.817229 GGAGCAGCCTGGCATCTTAC 60.817 60.000 22.65 10.08 35.83 2.34
2873 3195 1.528824 GGAGCAGCCTGGCATCTTA 59.471 57.895 22.65 0.00 35.83 2.10
2874 3196 2.274760 GGAGCAGCCTGGCATCTT 59.725 61.111 22.65 2.86 35.83 2.40
2875 3197 3.806667 GGGAGCAGCCTGGCATCT 61.807 66.667 22.65 16.57 36.66 2.90
2876 3198 4.891037 GGGGAGCAGCCTGGCATC 62.891 72.222 22.65 15.01 36.66 3.91
2880 3202 4.559063 CATCGGGGAGCAGCCTGG 62.559 72.222 0.00 0.00 36.66 4.45
2883 3205 4.802051 TTGCATCGGGGAGCAGCC 62.802 66.667 0.00 0.00 42.39 4.85
2884 3206 2.751436 TTTGCATCGGGGAGCAGC 60.751 61.111 0.00 0.00 42.39 5.25
2885 3207 2.117156 CCTTTGCATCGGGGAGCAG 61.117 63.158 0.00 0.00 42.39 4.24
2886 3208 1.925285 ATCCTTTGCATCGGGGAGCA 61.925 55.000 0.00 0.00 39.32 4.26
2887 3209 0.753111 AATCCTTTGCATCGGGGAGC 60.753 55.000 0.00 0.00 0.00 4.70
2888 3210 1.678101 GAAATCCTTTGCATCGGGGAG 59.322 52.381 0.00 0.00 0.00 4.30
2889 3211 1.762708 GAAATCCTTTGCATCGGGGA 58.237 50.000 0.00 0.00 0.00 4.81
2890 3212 0.381801 CGAAATCCTTTGCATCGGGG 59.618 55.000 0.00 0.00 0.00 5.73
2891 3213 1.378531 TCGAAATCCTTTGCATCGGG 58.621 50.000 4.01 0.00 34.47 5.14
2892 3214 5.444613 CGTATATCGAAATCCTTTGCATCGG 60.445 44.000 4.01 0.00 42.86 4.18
2893 3215 5.541910 CGTATATCGAAATCCTTTGCATCG 58.458 41.667 0.00 0.00 42.86 3.84
2894 3216 5.120830 AGCGTATATCGAAATCCTTTGCATC 59.879 40.000 0.00 0.00 42.86 3.91
2895 3217 4.997395 AGCGTATATCGAAATCCTTTGCAT 59.003 37.500 0.00 0.00 42.86 3.96
2896 3218 4.211164 CAGCGTATATCGAAATCCTTTGCA 59.789 41.667 0.00 0.00 42.86 4.08
2897 3219 4.447724 TCAGCGTATATCGAAATCCTTTGC 59.552 41.667 0.00 0.00 42.86 3.68
2898 3220 6.366061 TCATCAGCGTATATCGAAATCCTTTG 59.634 38.462 0.00 0.00 42.86 2.77
2899 3221 6.366332 GTCATCAGCGTATATCGAAATCCTTT 59.634 38.462 0.00 0.00 42.86 3.11
2900 3222 5.864474 GTCATCAGCGTATATCGAAATCCTT 59.136 40.000 0.00 0.00 42.86 3.36
2901 3223 5.403246 GTCATCAGCGTATATCGAAATCCT 58.597 41.667 0.00 0.00 42.86 3.24
2902 3224 4.263209 CGTCATCAGCGTATATCGAAATCC 59.737 45.833 0.00 0.00 42.86 3.01
2903 3225 4.852104 ACGTCATCAGCGTATATCGAAATC 59.148 41.667 0.00 0.00 41.06 2.17
2904 3226 4.617223 CACGTCATCAGCGTATATCGAAAT 59.383 41.667 0.00 0.00 40.90 2.17
2905 3227 3.972502 CACGTCATCAGCGTATATCGAAA 59.027 43.478 0.00 0.00 40.90 3.46
2906 3228 3.551551 CACGTCATCAGCGTATATCGAA 58.448 45.455 0.00 0.00 40.90 3.71
2907 3229 2.095919 CCACGTCATCAGCGTATATCGA 60.096 50.000 0.00 0.00 40.90 3.59
2908 3230 2.242564 CCACGTCATCAGCGTATATCG 58.757 52.381 0.00 0.00 40.90 2.92
2909 3231 2.980476 CACCACGTCATCAGCGTATATC 59.020 50.000 0.00 0.00 40.90 1.63
2910 3232 2.862530 GCACCACGTCATCAGCGTATAT 60.863 50.000 0.00 0.00 40.90 0.86
2911 3233 1.535226 GCACCACGTCATCAGCGTATA 60.535 52.381 0.00 0.00 40.90 1.47
2912 3234 0.806102 GCACCACGTCATCAGCGTAT 60.806 55.000 0.00 0.00 40.90 3.06
2913 3235 1.445410 GCACCACGTCATCAGCGTA 60.445 57.895 0.00 0.00 40.90 4.42
2914 3236 2.738521 GCACCACGTCATCAGCGT 60.739 61.111 0.00 0.00 43.90 5.07
2915 3237 2.433145 AGCACCACGTCATCAGCG 60.433 61.111 0.00 0.00 0.00 5.18
2916 3238 1.230635 AACAGCACCACGTCATCAGC 61.231 55.000 0.00 0.00 0.00 4.26
2917 3239 0.792640 GAACAGCACCACGTCATCAG 59.207 55.000 0.00 0.00 0.00 2.90
2918 3240 0.105778 TGAACAGCACCACGTCATCA 59.894 50.000 0.00 0.00 0.00 3.07
2919 3241 1.394917 GATGAACAGCACCACGTCATC 59.605 52.381 0.00 0.00 0.00 2.92
2920 3242 1.442769 GATGAACAGCACCACGTCAT 58.557 50.000 0.00 0.00 0.00 3.06
2921 3243 0.602638 GGATGAACAGCACCACGTCA 60.603 55.000 0.00 0.00 0.00 4.35
2922 3244 1.626654 CGGATGAACAGCACCACGTC 61.627 60.000 0.00 0.00 0.00 4.34
2923 3245 1.667830 CGGATGAACAGCACCACGT 60.668 57.895 0.00 0.00 0.00 4.49
2924 3246 2.390599 CCGGATGAACAGCACCACG 61.391 63.158 0.00 0.00 0.00 4.94
2925 3247 2.690778 GCCGGATGAACAGCACCAC 61.691 63.158 5.05 0.00 0.00 4.16
2926 3248 2.359850 GCCGGATGAACAGCACCA 60.360 61.111 5.05 0.00 0.00 4.17
2927 3249 3.134127 GGCCGGATGAACAGCACC 61.134 66.667 5.05 0.00 0.00 5.01
2928 3250 3.134127 GGGCCGGATGAACAGCAC 61.134 66.667 5.05 0.00 0.00 4.40
2929 3251 3.329542 GAGGGCCGGATGAACAGCA 62.330 63.158 5.05 0.00 0.00 4.41
2930 3252 2.514824 GAGGGCCGGATGAACAGC 60.515 66.667 5.05 0.00 0.00 4.40
2931 3253 1.915078 AAGGAGGGCCGGATGAACAG 61.915 60.000 5.05 0.00 39.96 3.16
2932 3254 1.923395 AAGGAGGGCCGGATGAACA 60.923 57.895 5.05 0.00 39.96 3.18
2933 3255 1.452108 CAAGGAGGGCCGGATGAAC 60.452 63.158 5.05 0.00 39.96 3.18
2934 3256 2.998097 CAAGGAGGGCCGGATGAA 59.002 61.111 5.05 0.00 39.96 2.57
2935 3257 3.797353 GCAAGGAGGGCCGGATGA 61.797 66.667 5.05 0.00 39.96 2.92
2936 3258 4.883354 GGCAAGGAGGGCCGGATG 62.883 72.222 5.05 0.00 42.39 3.51
2942 3264 3.334054 AGGTCAGGCAAGGAGGGC 61.334 66.667 0.00 0.00 0.00 5.19
2943 3265 2.674220 GGAGGTCAGGCAAGGAGGG 61.674 68.421 0.00 0.00 0.00 4.30
2944 3266 2.993853 GGAGGTCAGGCAAGGAGG 59.006 66.667 0.00 0.00 0.00 4.30
2945 3267 2.581354 CGGAGGTCAGGCAAGGAG 59.419 66.667 0.00 0.00 0.00 3.69
2958 3280 1.374252 CCACTTGGACGAACCGGAG 60.374 63.158 9.46 0.76 42.61 4.63
2959 3281 2.738480 CCACTTGGACGAACCGGA 59.262 61.111 9.46 0.00 42.61 5.14
2960 3282 3.047877 GCCACTTGGACGAACCGG 61.048 66.667 0.00 0.00 42.61 5.28
2961 3283 3.047877 GGCCACTTGGACGAACCG 61.048 66.667 0.00 0.00 42.61 4.44
2967 3289 0.682209 ATGAGCATGGCCACTTGGAC 60.682 55.000 8.16 0.00 45.93 4.02
2968 3290 0.918258 TATGAGCATGGCCACTTGGA 59.082 50.000 8.16 0.00 37.39 3.53
2969 3291 1.991121 ATATGAGCATGGCCACTTGG 58.009 50.000 8.16 0.00 38.53 3.61
2970 3292 3.491964 CCAAATATGAGCATGGCCACTTG 60.492 47.826 8.16 4.28 0.00 3.16
2971 3293 2.696707 CCAAATATGAGCATGGCCACTT 59.303 45.455 8.16 0.00 0.00 3.16
2972 3294 2.091720 TCCAAATATGAGCATGGCCACT 60.092 45.455 8.16 0.00 32.87 4.00
2973 3295 2.309613 TCCAAATATGAGCATGGCCAC 58.690 47.619 8.16 0.00 32.87 5.01
2974 3296 2.752075 TCCAAATATGAGCATGGCCA 57.248 45.000 8.56 8.56 32.87 5.36
2975 3297 3.225104 TCTTCCAAATATGAGCATGGCC 58.775 45.455 0.00 0.00 32.87 5.36
2976 3298 4.500603 CTCTTCCAAATATGAGCATGGC 57.499 45.455 0.00 0.00 32.87 4.40
2982 3304 4.760715 CCCTGATGCTCTTCCAAATATGAG 59.239 45.833 0.00 0.00 0.00 2.90
2983 3305 4.722220 CCCTGATGCTCTTCCAAATATGA 58.278 43.478 0.00 0.00 0.00 2.15
2984 3306 3.255149 GCCCTGATGCTCTTCCAAATATG 59.745 47.826 0.00 0.00 0.00 1.78
2985 3307 3.139770 AGCCCTGATGCTCTTCCAAATAT 59.860 43.478 0.00 0.00 36.75 1.28
2986 3308 2.511218 AGCCCTGATGCTCTTCCAAATA 59.489 45.455 0.00 0.00 36.75 1.40
2987 3309 1.287146 AGCCCTGATGCTCTTCCAAAT 59.713 47.619 0.00 0.00 36.75 2.32
2988 3310 0.700564 AGCCCTGATGCTCTTCCAAA 59.299 50.000 0.00 0.00 36.75 3.28
2989 3311 1.210478 GTAGCCCTGATGCTCTTCCAA 59.790 52.381 0.00 0.00 41.68 3.53
2990 3312 0.833287 GTAGCCCTGATGCTCTTCCA 59.167 55.000 0.00 0.00 41.68 3.53
2991 3313 0.833287 TGTAGCCCTGATGCTCTTCC 59.167 55.000 0.00 0.00 41.68 3.46
2992 3314 2.698855 TTGTAGCCCTGATGCTCTTC 57.301 50.000 0.00 0.00 41.68 2.87
2993 3315 3.659183 ATTTGTAGCCCTGATGCTCTT 57.341 42.857 0.00 0.00 41.68 2.85
2994 3316 4.778213 TTATTTGTAGCCCTGATGCTCT 57.222 40.909 0.00 0.00 41.68 4.09
2995 3317 4.884164 AGTTTATTTGTAGCCCTGATGCTC 59.116 41.667 0.00 0.00 41.68 4.26
2996 3318 4.860022 AGTTTATTTGTAGCCCTGATGCT 58.140 39.130 0.00 0.00 45.38 3.79
2997 3319 5.582689 AAGTTTATTTGTAGCCCTGATGC 57.417 39.130 0.00 0.00 0.00 3.91
2998 3320 5.807011 GCAAAGTTTATTTGTAGCCCTGATG 59.193 40.000 2.65 0.00 0.00 3.07
2999 3321 5.105351 GGCAAAGTTTATTTGTAGCCCTGAT 60.105 40.000 0.00 0.00 34.94 2.90
3000 3322 4.219725 GGCAAAGTTTATTTGTAGCCCTGA 59.780 41.667 0.00 0.00 34.94 3.86
3001 3323 4.021544 TGGCAAAGTTTATTTGTAGCCCTG 60.022 41.667 8.04 0.00 40.08 4.45
3002 3324 4.156477 TGGCAAAGTTTATTTGTAGCCCT 58.844 39.130 8.04 0.00 40.08 5.19
3003 3325 4.529109 TGGCAAAGTTTATTTGTAGCCC 57.471 40.909 8.04 0.00 40.08 5.19
3004 3326 6.873605 AGATTTGGCAAAGTTTATTTGTAGCC 59.126 34.615 18.61 4.37 41.15 3.93
3005 3327 7.622048 GCAGATTTGGCAAAGTTTATTTGTAGC 60.622 37.037 18.61 5.46 0.00 3.58
3006 3328 7.599998 AGCAGATTTGGCAAAGTTTATTTGTAG 59.400 33.333 18.61 0.00 0.00 2.74
3007 3329 7.384660 CAGCAGATTTGGCAAAGTTTATTTGTA 59.615 33.333 18.61 0.00 0.00 2.41
3008 3330 6.203338 CAGCAGATTTGGCAAAGTTTATTTGT 59.797 34.615 18.61 0.00 0.00 2.83
3009 3331 6.595794 CAGCAGATTTGGCAAAGTTTATTTG 58.404 36.000 18.61 7.62 0.00 2.32
3010 3332 5.179929 GCAGCAGATTTGGCAAAGTTTATTT 59.820 36.000 18.61 0.00 0.00 1.40
3011 3333 4.692155 GCAGCAGATTTGGCAAAGTTTATT 59.308 37.500 18.61 0.00 0.00 1.40
3012 3334 4.248058 GCAGCAGATTTGGCAAAGTTTAT 58.752 39.130 18.61 0.29 0.00 1.40
3013 3335 3.652274 GCAGCAGATTTGGCAAAGTTTA 58.348 40.909 18.61 0.00 0.00 2.01
3014 3336 2.486918 GCAGCAGATTTGGCAAAGTTT 58.513 42.857 18.61 1.11 0.00 2.66
3015 3337 1.603678 CGCAGCAGATTTGGCAAAGTT 60.604 47.619 18.61 1.92 0.00 2.66
3016 3338 0.038892 CGCAGCAGATTTGGCAAAGT 60.039 50.000 18.61 5.32 0.00 2.66
3017 3339 0.241749 TCGCAGCAGATTTGGCAAAG 59.758 50.000 18.61 6.09 0.00 2.77
3018 3340 0.889994 ATCGCAGCAGATTTGGCAAA 59.110 45.000 16.01 16.01 0.00 3.68
3019 3341 0.889994 AATCGCAGCAGATTTGGCAA 59.110 45.000 0.00 0.00 37.56 4.52
3020 3342 1.748950 TAATCGCAGCAGATTTGGCA 58.251 45.000 14.82 0.00 40.83 4.92
3021 3343 2.291465 TCATAATCGCAGCAGATTTGGC 59.709 45.455 14.82 0.00 40.83 4.52
3022 3344 4.379186 GGATCATAATCGCAGCAGATTTGG 60.379 45.833 14.82 9.49 40.83 3.28
3023 3345 4.668431 CGGATCATAATCGCAGCAGATTTG 60.668 45.833 14.82 12.80 40.83 2.32
3024 3346 3.434641 CGGATCATAATCGCAGCAGATTT 59.565 43.478 14.82 1.36 40.83 2.17
3025 3347 2.998670 CGGATCATAATCGCAGCAGATT 59.001 45.455 14.26 14.26 42.77 2.40
3026 3348 2.232208 TCGGATCATAATCGCAGCAGAT 59.768 45.455 0.00 0.00 32.24 2.90
3027 3349 1.613437 TCGGATCATAATCGCAGCAGA 59.387 47.619 0.00 0.00 32.24 4.26
3028 3350 1.991264 CTCGGATCATAATCGCAGCAG 59.009 52.381 0.00 0.00 32.24 4.24
3029 3351 1.613437 TCTCGGATCATAATCGCAGCA 59.387 47.619 0.00 0.00 32.24 4.41
3030 3352 2.354109 TCTCGGATCATAATCGCAGC 57.646 50.000 0.00 0.00 32.24 5.25
3031 3353 4.166187 TCTTCTCGGATCATAATCGCAG 57.834 45.455 0.00 0.00 32.24 5.18
3032 3354 4.278419 TCTTCTTCTCGGATCATAATCGCA 59.722 41.667 0.00 0.00 32.24 5.10
3033 3355 4.799678 TCTTCTTCTCGGATCATAATCGC 58.200 43.478 0.00 0.00 32.24 4.58
3034 3356 5.804473 CCATCTTCTTCTCGGATCATAATCG 59.196 44.000 0.00 0.00 32.24 3.34
3035 3357 6.929625 TCCATCTTCTTCTCGGATCATAATC 58.070 40.000 0.00 0.00 0.00 1.75
3036 3358 6.723515 TCTCCATCTTCTTCTCGGATCATAAT 59.276 38.462 0.00 0.00 0.00 1.28
3037 3359 6.015856 GTCTCCATCTTCTTCTCGGATCATAA 60.016 42.308 0.00 0.00 0.00 1.90
3038 3360 5.475220 GTCTCCATCTTCTTCTCGGATCATA 59.525 44.000 0.00 0.00 0.00 2.15
3039 3361 4.280677 GTCTCCATCTTCTTCTCGGATCAT 59.719 45.833 0.00 0.00 0.00 2.45
3040 3362 3.634448 GTCTCCATCTTCTTCTCGGATCA 59.366 47.826 0.00 0.00 0.00 2.92
3041 3363 3.634448 TGTCTCCATCTTCTTCTCGGATC 59.366 47.826 0.00 0.00 0.00 3.36
3042 3364 3.636679 TGTCTCCATCTTCTTCTCGGAT 58.363 45.455 0.00 0.00 0.00 4.18
3043 3365 3.087370 TGTCTCCATCTTCTTCTCGGA 57.913 47.619 0.00 0.00 0.00 4.55
3044 3366 3.430098 CCTTGTCTCCATCTTCTTCTCGG 60.430 52.174 0.00 0.00 0.00 4.63
3045 3367 3.445450 TCCTTGTCTCCATCTTCTTCTCG 59.555 47.826 0.00 0.00 0.00 4.04
3046 3368 5.175127 GTTCCTTGTCTCCATCTTCTTCTC 58.825 45.833 0.00 0.00 0.00 2.87
3047 3369 5.159273 GTTCCTTGTCTCCATCTTCTTCT 57.841 43.478 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.