Multiple sequence alignment - TraesCS1D01G302700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G302700 chr1D 100.000 2699 0 0 1 2699 400357589 400360287 0.000000e+00 4985.0
1 TraesCS1D01G302700 chr1D 80.000 255 38 12 2447 2691 334248985 334248734 2.760000e-40 176.0
2 TraesCS1D01G302700 chr1D 78.077 260 45 11 2447 2699 12990576 12990830 1.290000e-33 154.0
3 TraesCS1D01G302700 chr1A 92.143 1451 79 28 577 2013 496644764 496646193 0.000000e+00 2015.0
4 TraesCS1D01G302700 chr1A 89.381 226 13 1 172 397 496644555 496644769 9.520000e-70 274.0
5 TraesCS1D01G302700 chr1A 87.013 77 8 2 2002 2078 290317286 290317360 4.790000e-13 86.1
6 TraesCS1D01G302700 chr1B 89.774 1369 82 19 423 1753 537414734 537416082 0.000000e+00 1700.0
7 TraesCS1D01G302700 chr1B 89.952 418 30 5 10 427 537409022 537409427 1.840000e-146 529.0
8 TraesCS1D01G302700 chr1B 96.629 178 4 2 1734 1909 537416093 537416270 7.310000e-76 294.0
9 TraesCS1D01G302700 chr1B 89.062 128 11 3 1889 2014 537416279 537416405 3.600000e-34 156.0
10 TraesCS1D01G302700 chr1B 90.141 71 5 2 2009 2078 671330485 671330416 1.030000e-14 91.6
11 TraesCS1D01G302700 chr1B 90.141 71 5 2 2009 2078 671359574 671359505 1.030000e-14 91.6
12 TraesCS1D01G302700 chr1B 88.312 77 5 3 2002 2078 684676370 684676298 3.700000e-14 89.8
13 TraesCS1D01G302700 chr5B 89.902 614 41 10 2089 2697 310797122 310796525 0.000000e+00 771.0
14 TraesCS1D01G302700 chr7B 80.878 319 26 12 2089 2407 742190126 742190409 4.520000e-53 219.0
15 TraesCS1D01G302700 chr7B 94.737 38 2 0 2462 2499 451349319 451349282 2.900000e-05 60.2
16 TraesCS1D01G302700 chrUn 81.119 143 23 3 2560 2699 359236030 359236171 7.900000e-21 111.0
17 TraesCS1D01G302700 chr2A 80.420 143 24 3 2560 2699 24650065 24650206 3.680000e-19 106.0
18 TraesCS1D01G302700 chr2A 80.420 143 24 3 2560 2699 24663979 24664120 3.680000e-19 106.0
19 TraesCS1D01G302700 chr2A 80.420 143 24 3 2560 2699 24691880 24692021 3.680000e-19 106.0
20 TraesCS1D01G302700 chr2A 79.355 155 27 4 2549 2699 24705296 24705449 1.320000e-18 104.0
21 TraesCS1D01G302700 chr2A 82.500 120 17 3 2583 2699 25658756 25658638 4.750000e-18 102.0
22 TraesCS1D01G302700 chr4A 89.610 77 6 2 2002 2078 596167882 596167808 2.210000e-16 97.1
23 TraesCS1D01G302700 chr4B 88.462 78 5 3 2002 2078 626526267 626526193 1.030000e-14 91.6
24 TraesCS1D01G302700 chr7D 90.000 70 6 1 2010 2078 237420599 237420668 3.700000e-14 89.8
25 TraesCS1D01G302700 chr4D 87.179 78 6 4 2002 2078 365179692 365179618 4.790000e-13 86.1
26 TraesCS1D01G302700 chr6D 87.013 77 6 3 2002 2078 462527799 462527727 1.720000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G302700 chr1D 400357589 400360287 2698 False 4985.000000 4985 100.000000 1 2699 1 chr1D.!!$F2 2698
1 TraesCS1D01G302700 chr1A 496644555 496646193 1638 False 1144.500000 2015 90.762000 172 2013 2 chr1A.!!$F2 1841
2 TraesCS1D01G302700 chr1B 537414734 537416405 1671 False 716.666667 1700 91.821667 423 2014 3 chr1B.!!$F2 1591
3 TraesCS1D01G302700 chr5B 310796525 310797122 597 True 771.000000 771 89.902000 2089 2697 1 chr5B.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.172352 AGCTAGCTTGTCTCTGCGTC 59.828 55.0 12.68 0.0 32.16 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2187 0.17576 TATGCCCACGAGACTCAAGC 59.824 55.0 2.82 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.769739 TGTTGAACTGTATGGAGCTGT 57.230 42.857 0.00 0.00 0.00 4.40
21 22 3.664107 TGTTGAACTGTATGGAGCTGTC 58.336 45.455 0.00 0.00 0.00 3.51
22 23 2.654749 TGAACTGTATGGAGCTGTCG 57.345 50.000 0.00 0.00 0.00 4.35
23 24 2.167662 TGAACTGTATGGAGCTGTCGA 58.832 47.619 0.00 0.00 0.00 4.20
24 25 2.164422 TGAACTGTATGGAGCTGTCGAG 59.836 50.000 0.00 0.00 0.00 4.04
25 26 2.130272 ACTGTATGGAGCTGTCGAGA 57.870 50.000 0.00 0.00 0.00 4.04
26 27 2.020720 ACTGTATGGAGCTGTCGAGAG 58.979 52.381 4.96 4.96 0.00 3.20
27 28 2.293170 CTGTATGGAGCTGTCGAGAGA 58.707 52.381 14.74 0.00 38.16 3.10
28 29 2.290367 CTGTATGGAGCTGTCGAGAGAG 59.710 54.545 14.74 0.00 43.49 3.20
29 30 1.606668 GTATGGAGCTGTCGAGAGAGG 59.393 57.143 14.74 0.00 43.49 3.69
30 31 0.257328 ATGGAGCTGTCGAGAGAGGA 59.743 55.000 14.74 0.00 43.49 3.71
31 32 0.257328 TGGAGCTGTCGAGAGAGGAT 59.743 55.000 14.74 0.00 43.49 3.24
32 33 1.490910 TGGAGCTGTCGAGAGAGGATA 59.509 52.381 14.74 0.00 43.49 2.59
33 34 2.092375 TGGAGCTGTCGAGAGAGGATAA 60.092 50.000 14.74 0.00 43.49 1.75
34 35 2.952978 GGAGCTGTCGAGAGAGGATAAA 59.047 50.000 14.74 0.00 43.49 1.40
35 36 3.004315 GGAGCTGTCGAGAGAGGATAAAG 59.996 52.174 14.74 0.00 43.49 1.85
36 37 3.880490 GAGCTGTCGAGAGAGGATAAAGA 59.120 47.826 14.74 0.00 43.49 2.52
37 38 4.274147 AGCTGTCGAGAGAGGATAAAGAA 58.726 43.478 14.74 0.00 43.49 2.52
38 39 4.338118 AGCTGTCGAGAGAGGATAAAGAAG 59.662 45.833 14.74 0.00 43.49 2.85
39 40 4.499019 GCTGTCGAGAGAGGATAAAGAAGG 60.499 50.000 14.74 0.00 43.49 3.46
40 41 4.601084 TGTCGAGAGAGGATAAAGAAGGT 58.399 43.478 0.00 0.00 43.49 3.50
41 42 5.752650 TGTCGAGAGAGGATAAAGAAGGTA 58.247 41.667 0.00 0.00 43.49 3.08
42 43 5.823570 TGTCGAGAGAGGATAAAGAAGGTAG 59.176 44.000 0.00 0.00 43.49 3.18
43 44 4.822896 TCGAGAGAGGATAAAGAAGGTAGC 59.177 45.833 0.00 0.00 34.84 3.58
44 45 4.825085 CGAGAGAGGATAAAGAAGGTAGCT 59.175 45.833 0.00 0.00 0.00 3.32
45 46 5.998981 CGAGAGAGGATAAAGAAGGTAGCTA 59.001 44.000 0.00 0.00 0.00 3.32
46 47 6.148811 CGAGAGAGGATAAAGAAGGTAGCTAG 59.851 46.154 0.00 0.00 0.00 3.42
47 48 5.773176 AGAGAGGATAAAGAAGGTAGCTAGC 59.227 44.000 15.19 15.19 0.00 3.42
48 49 5.711698 AGAGGATAAAGAAGGTAGCTAGCT 58.288 41.667 23.12 23.12 35.17 3.32
49 50 6.140377 AGAGGATAAAGAAGGTAGCTAGCTT 58.860 40.000 32.56 32.56 45.70 3.74
50 51 6.041523 AGAGGATAAAGAAGGTAGCTAGCTTG 59.958 42.308 35.98 0.00 43.36 4.01
51 52 5.663556 AGGATAAAGAAGGTAGCTAGCTTGT 59.336 40.000 35.98 30.45 43.36 3.16
52 53 5.986741 GGATAAAGAAGGTAGCTAGCTTGTC 59.013 44.000 35.98 24.81 43.36 3.18
53 54 6.183360 GGATAAAGAAGGTAGCTAGCTTGTCT 60.183 42.308 35.98 26.39 43.36 3.41
54 55 4.729227 AAGAAGGTAGCTAGCTTGTCTC 57.271 45.455 35.98 23.86 43.36 3.36
55 56 3.976015 AGAAGGTAGCTAGCTTGTCTCT 58.024 45.455 35.98 25.45 43.36 3.10
56 57 3.699038 AGAAGGTAGCTAGCTTGTCTCTG 59.301 47.826 35.98 0.00 43.36 3.35
57 58 1.754226 AGGTAGCTAGCTTGTCTCTGC 59.246 52.381 24.88 0.00 0.00 4.26
58 59 1.535015 GGTAGCTAGCTTGTCTCTGCG 60.535 57.143 24.88 0.00 32.16 5.18
59 60 1.133407 GTAGCTAGCTTGTCTCTGCGT 59.867 52.381 24.88 0.00 32.16 5.24
60 61 0.172352 AGCTAGCTTGTCTCTGCGTC 59.828 55.000 12.68 0.00 32.16 5.19
61 62 1.136872 GCTAGCTTGTCTCTGCGTCG 61.137 60.000 7.70 0.00 0.00 5.12
62 63 1.136872 CTAGCTTGTCTCTGCGTCGC 61.137 60.000 11.10 11.10 0.00 5.19
63 64 2.850786 TAGCTTGTCTCTGCGTCGCG 62.851 60.000 13.38 0.00 0.00 5.87
79 80 4.812476 CGCCGAGCCGTTCATGGA 62.812 66.667 0.00 0.00 0.00 3.41
80 81 2.892425 GCCGAGCCGTTCATGGAG 60.892 66.667 0.00 0.00 0.00 3.86
81 82 2.892425 CCGAGCCGTTCATGGAGC 60.892 66.667 0.00 0.00 0.00 4.70
82 83 3.257561 CGAGCCGTTCATGGAGCG 61.258 66.667 0.00 0.00 36.11 5.03
83 84 2.184322 GAGCCGTTCATGGAGCGA 59.816 61.111 4.03 0.00 38.48 4.93
84 85 1.447838 GAGCCGTTCATGGAGCGAA 60.448 57.895 4.03 0.00 38.48 4.70
85 86 1.424493 GAGCCGTTCATGGAGCGAAG 61.424 60.000 4.03 0.00 38.48 3.79
86 87 1.447838 GCCGTTCATGGAGCGAAGA 60.448 57.895 4.03 0.00 38.48 2.87
87 88 1.019278 GCCGTTCATGGAGCGAAGAA 61.019 55.000 4.03 0.00 38.48 2.52
88 89 1.438651 CCGTTCATGGAGCGAAGAAA 58.561 50.000 4.03 0.00 38.48 2.52
89 90 1.394917 CCGTTCATGGAGCGAAGAAAG 59.605 52.381 4.03 0.00 38.48 2.62
90 91 2.069273 CGTTCATGGAGCGAAGAAAGT 58.931 47.619 0.00 0.00 38.48 2.66
91 92 2.092838 CGTTCATGGAGCGAAGAAAGTC 59.907 50.000 0.00 0.00 38.48 3.01
92 93 3.067106 GTTCATGGAGCGAAGAAAGTCA 58.933 45.455 0.00 0.00 0.00 3.41
93 94 3.401033 TCATGGAGCGAAGAAAGTCAA 57.599 42.857 0.00 0.00 0.00 3.18
94 95 3.738982 TCATGGAGCGAAGAAAGTCAAA 58.261 40.909 0.00 0.00 0.00 2.69
95 96 4.133820 TCATGGAGCGAAGAAAGTCAAAA 58.866 39.130 0.00 0.00 0.00 2.44
96 97 3.963383 TGGAGCGAAGAAAGTCAAAAC 57.037 42.857 0.00 0.00 0.00 2.43
97 98 3.541632 TGGAGCGAAGAAAGTCAAAACT 58.458 40.909 0.00 0.00 37.32 2.66
98 99 4.699637 TGGAGCGAAGAAAGTCAAAACTA 58.300 39.130 0.00 0.00 33.48 2.24
99 100 4.750098 TGGAGCGAAGAAAGTCAAAACTAG 59.250 41.667 0.00 0.00 33.48 2.57
100 101 4.989168 GGAGCGAAGAAAGTCAAAACTAGA 59.011 41.667 0.00 0.00 33.48 2.43
101 102 5.107414 GGAGCGAAGAAAGTCAAAACTAGAC 60.107 44.000 0.00 0.00 33.48 2.59
102 103 4.444720 AGCGAAGAAAGTCAAAACTAGACG 59.555 41.667 0.00 0.00 40.84 4.18
103 104 4.208666 GCGAAGAAAGTCAAAACTAGACGT 59.791 41.667 0.00 0.00 40.84 4.34
104 105 5.609910 GCGAAGAAAGTCAAAACTAGACGTC 60.610 44.000 7.70 7.70 40.84 4.34
105 106 5.386120 CGAAGAAAGTCAAAACTAGACGTCG 60.386 44.000 10.46 0.00 40.84 5.12
106 107 3.734735 AGAAAGTCAAAACTAGACGTCGC 59.265 43.478 10.46 0.00 40.84 5.19
107 108 2.787601 AGTCAAAACTAGACGTCGCA 57.212 45.000 10.46 0.97 40.84 5.10
108 109 3.088194 AGTCAAAACTAGACGTCGCAA 57.912 42.857 10.46 0.00 40.84 4.85
109 110 2.793232 AGTCAAAACTAGACGTCGCAAC 59.207 45.455 10.46 1.80 40.84 4.17
110 111 2.097056 GTCAAAACTAGACGTCGCAACC 60.097 50.000 10.46 0.00 0.00 3.77
111 112 1.193874 CAAAACTAGACGTCGCAACCC 59.806 52.381 10.46 0.00 0.00 4.11
112 113 0.320160 AAACTAGACGTCGCAACCCC 60.320 55.000 10.46 0.00 0.00 4.95
113 114 2.163601 AACTAGACGTCGCAACCCCC 62.164 60.000 10.46 0.00 0.00 5.40
114 115 3.695022 CTAGACGTCGCAACCCCCG 62.695 68.421 10.46 0.00 0.00 5.73
130 131 3.853330 CGTGCGCCAAGATCCGTG 61.853 66.667 4.18 0.00 0.00 4.94
131 132 4.166011 GTGCGCCAAGATCCGTGC 62.166 66.667 4.18 4.16 36.04 5.34
132 133 4.695993 TGCGCCAAGATCCGTGCA 62.696 61.111 4.18 8.69 42.86 4.57
133 134 3.869272 GCGCCAAGATCCGTGCAG 61.869 66.667 0.00 0.00 35.57 4.41
134 135 3.197790 CGCCAAGATCCGTGCAGG 61.198 66.667 0.00 0.00 42.97 4.85
135 136 2.045926 GCCAAGATCCGTGCAGGT 60.046 61.111 5.57 0.00 41.99 4.00
136 137 1.675641 GCCAAGATCCGTGCAGGTT 60.676 57.895 5.57 0.00 41.99 3.50
137 138 1.926511 GCCAAGATCCGTGCAGGTTG 61.927 60.000 5.57 3.31 41.99 3.77
138 139 0.321564 CCAAGATCCGTGCAGGTTGA 60.322 55.000 5.57 0.00 41.99 3.18
139 140 1.679944 CCAAGATCCGTGCAGGTTGAT 60.680 52.381 5.57 1.82 41.99 2.57
140 141 2.086869 CAAGATCCGTGCAGGTTGATT 58.913 47.619 5.57 0.00 41.99 2.57
141 142 2.489329 CAAGATCCGTGCAGGTTGATTT 59.511 45.455 5.57 0.00 41.99 2.17
142 143 3.627395 AGATCCGTGCAGGTTGATTTA 57.373 42.857 5.57 0.00 41.99 1.40
143 144 3.950397 AGATCCGTGCAGGTTGATTTAA 58.050 40.909 5.57 0.00 41.99 1.52
144 145 3.689649 AGATCCGTGCAGGTTGATTTAAC 59.310 43.478 5.57 0.00 41.99 2.01
145 146 2.852449 TCCGTGCAGGTTGATTTAACA 58.148 42.857 5.57 0.00 41.18 2.41
146 147 2.811431 TCCGTGCAGGTTGATTTAACAG 59.189 45.455 5.57 0.00 41.18 3.16
147 148 2.584791 CGTGCAGGTTGATTTAACAGC 58.415 47.619 0.00 0.00 41.18 4.40
148 149 2.668279 CGTGCAGGTTGATTTAACAGCC 60.668 50.000 0.00 0.00 41.18 4.85
149 150 2.295909 GTGCAGGTTGATTTAACAGCCA 59.704 45.455 0.00 0.00 42.27 4.75
150 151 2.557924 TGCAGGTTGATTTAACAGCCAG 59.442 45.455 0.00 0.00 42.27 4.85
151 152 2.672195 GCAGGTTGATTTAACAGCCAGC 60.672 50.000 0.00 0.00 43.22 4.85
152 153 1.812571 AGGTTGATTTAACAGCCAGCG 59.187 47.619 0.00 0.00 42.27 5.18
153 154 1.135402 GGTTGATTTAACAGCCAGCGG 60.135 52.381 0.00 0.00 41.18 5.52
154 155 4.897876 GGTTGATTTAACAGCCAGCGGC 62.898 54.545 11.02 11.02 41.59 6.53
173 174 3.764466 CGTTCGCTCTGGGCTCCT 61.764 66.667 0.00 0.00 39.13 3.69
174 175 2.415608 CGTTCGCTCTGGGCTCCTA 61.416 63.158 0.00 0.00 39.13 2.94
175 176 1.439644 GTTCGCTCTGGGCTCCTAG 59.560 63.158 0.00 0.00 39.13 3.02
176 177 1.038130 GTTCGCTCTGGGCTCCTAGA 61.038 60.000 0.00 1.97 39.13 2.43
240 241 4.997565 AGGAATATTGTGGAAAATGTGCG 58.002 39.130 0.00 0.00 0.00 5.34
330 331 6.058833 TGCTTCCCCCTTTTGTTAAAATTTC 58.941 36.000 0.00 0.00 0.00 2.17
338 339 7.226523 CCCCTTTTGTTAAAATTTCTGAACCTG 59.773 37.037 0.00 0.00 0.00 4.00
349 350 3.624326 TCTGAACCTGTTTCATTTGCG 57.376 42.857 0.00 0.00 43.54 4.85
352 353 2.223688 TGAACCTGTTTCATTTGCGTGG 60.224 45.455 0.00 0.00 39.45 4.94
438 439 3.876914 GGGCGTGTCATGATTTCTGATAA 59.123 43.478 0.00 0.00 0.00 1.75
503 504 4.785669 TTTTATTTTTGTGCGCCAACAG 57.214 36.364 4.18 0.00 31.20 3.16
521 522 3.578272 GTTGCCACGTGTGCGGAA 61.578 61.111 15.65 3.87 43.45 4.30
553 558 6.533367 GTCATTGGTCAAATAGAGTCTCTGAC 59.467 42.308 12.92 16.31 36.50 3.51
659 667 8.246871 CCGATAGATGATGCATAGACTAAAAGA 58.753 37.037 0.00 0.00 39.76 2.52
683 691 6.029346 ACACCTTTTTCAATTAGAGCATGG 57.971 37.500 0.00 0.00 0.00 3.66
692 700 5.311265 TCAATTAGAGCATGGCCAGATTAG 58.689 41.667 13.05 0.00 0.00 1.73
706 714 5.003804 GCCAGATTAGGTTTCAGAAACTGA 58.996 41.667 22.60 10.32 41.14 3.41
746 754 2.288763 TGTAAGAGAGCATTCGCACACA 60.289 45.455 0.00 0.00 42.27 3.72
884 906 5.499004 TCTGGCACTAATAAAACACCTCT 57.501 39.130 0.00 0.00 0.00 3.69
904 926 5.047092 CCTCTGGTTGGCTTGTTAAAATCAT 60.047 40.000 0.00 0.00 0.00 2.45
911 933 5.851720 TGGCTTGTTAAAATCATCAAAGCA 58.148 33.333 6.80 0.00 0.00 3.91
948 1008 3.700038 GGAAGGATCCTCTTACGAGTTCA 59.300 47.826 16.52 0.00 42.93 3.18
955 1015 2.029828 CCTCTTACGAGTTCAGTGTGCT 60.030 50.000 0.00 0.00 35.43 4.40
958 1021 2.134201 TACGAGTTCAGTGTGCTGTG 57.866 50.000 0.00 0.00 43.05 3.66
959 1022 0.175760 ACGAGTTCAGTGTGCTGTGT 59.824 50.000 0.00 0.00 43.05 3.72
960 1023 1.407618 ACGAGTTCAGTGTGCTGTGTA 59.592 47.619 0.00 0.00 43.05 2.90
961 1024 1.787155 CGAGTTCAGTGTGCTGTGTAC 59.213 52.381 0.00 0.00 43.05 2.90
962 1025 1.787155 GAGTTCAGTGTGCTGTGTACG 59.213 52.381 0.00 0.00 43.05 3.67
963 1026 1.136305 AGTTCAGTGTGCTGTGTACGT 59.864 47.619 0.00 0.00 43.05 3.57
968 1031 3.097910 CAGTGTGCTGTGTACGTTTTTG 58.902 45.455 0.00 0.00 37.92 2.44
969 1032 1.843753 GTGTGCTGTGTACGTTTTTGC 59.156 47.619 0.00 0.00 0.00 3.68
970 1033 1.109296 GTGCTGTGTACGTTTTTGCG 58.891 50.000 0.00 0.00 37.94 4.85
971 1034 1.007580 TGCTGTGTACGTTTTTGCGA 58.992 45.000 0.00 0.00 35.59 5.10
972 1035 1.397343 TGCTGTGTACGTTTTTGCGAA 59.603 42.857 0.00 0.00 35.59 4.70
973 1036 2.032302 TGCTGTGTACGTTTTTGCGAAT 59.968 40.909 0.00 0.00 35.59 3.34
975 1038 4.212911 GCTGTGTACGTTTTTGCGAATAA 58.787 39.130 0.00 0.00 35.59 1.40
976 1039 4.671516 GCTGTGTACGTTTTTGCGAATAAA 59.328 37.500 0.00 0.00 35.59 1.40
977 1040 5.171695 GCTGTGTACGTTTTTGCGAATAAAA 59.828 36.000 0.00 0.00 35.59 1.52
978 1041 6.479654 TGTGTACGTTTTTGCGAATAAAAC 57.520 33.333 0.00 9.01 40.40 2.43
979 1042 5.454877 TGTGTACGTTTTTGCGAATAAAACC 59.545 36.000 0.00 3.19 40.60 3.27
980 1043 5.454877 GTGTACGTTTTTGCGAATAAAACCA 59.545 36.000 0.00 4.99 40.60 3.67
981 1044 6.142639 GTGTACGTTTTTGCGAATAAAACCAT 59.857 34.615 0.00 6.06 40.60 3.55
982 1045 7.323177 GTGTACGTTTTTGCGAATAAAACCATA 59.677 33.333 0.00 5.40 40.60 2.74
983 1046 8.021973 TGTACGTTTTTGCGAATAAAACCATAT 58.978 29.630 0.00 2.74 40.60 1.78
984 1047 7.876896 ACGTTTTTGCGAATAAAACCATATT 57.123 28.000 11.85 0.00 40.60 1.28
985 1048 7.944997 ACGTTTTTGCGAATAAAACCATATTC 58.055 30.769 11.85 0.00 40.60 1.75
986 1049 7.062488 ACGTTTTTGCGAATAAAACCATATTCC 59.938 33.333 11.85 0.00 40.60 3.01
987 1050 7.463515 CGTTTTTGCGAATAAAACCATATTCCC 60.464 37.037 11.85 0.00 40.60 3.97
988 1051 5.523438 TTGCGAATAAAACCATATTCCCC 57.477 39.130 0.00 0.00 38.50 4.81
989 1052 3.566322 TGCGAATAAAACCATATTCCCCG 59.434 43.478 0.00 0.00 38.50 5.73
990 1053 3.566742 GCGAATAAAACCATATTCCCCGT 59.433 43.478 0.00 0.00 38.50 5.28
991 1054 4.555906 GCGAATAAAACCATATTCCCCGTG 60.556 45.833 0.00 0.00 38.50 4.94
992 1055 4.817464 CGAATAAAACCATATTCCCCGTGA 59.183 41.667 0.00 0.00 38.50 4.35
993 1056 5.277634 CGAATAAAACCATATTCCCCGTGAC 60.278 44.000 0.00 0.00 38.50 3.67
994 1057 3.732048 AAAACCATATTCCCCGTGACT 57.268 42.857 0.00 0.00 0.00 3.41
995 1058 3.277142 AAACCATATTCCCCGTGACTC 57.723 47.619 0.00 0.00 0.00 3.36
996 1059 2.176247 ACCATATTCCCCGTGACTCT 57.824 50.000 0.00 0.00 0.00 3.24
997 1060 2.478292 ACCATATTCCCCGTGACTCTT 58.522 47.619 0.00 0.00 0.00 2.85
998 1061 2.434702 ACCATATTCCCCGTGACTCTTC 59.565 50.000 0.00 0.00 0.00 2.87
999 1062 2.224305 CCATATTCCCCGTGACTCTTCC 60.224 54.545 0.00 0.00 0.00 3.46
1000 1063 2.241281 TATTCCCCGTGACTCTTCCA 57.759 50.000 0.00 0.00 0.00 3.53
1001 1064 1.584724 ATTCCCCGTGACTCTTCCAT 58.415 50.000 0.00 0.00 0.00 3.41
1002 1065 0.613260 TTCCCCGTGACTCTTCCATG 59.387 55.000 0.00 0.00 0.00 3.66
1003 1066 0.252057 TCCCCGTGACTCTTCCATGA 60.252 55.000 0.00 0.00 0.00 3.07
1004 1067 0.108138 CCCCGTGACTCTTCCATGAC 60.108 60.000 0.00 0.00 0.00 3.06
1005 1068 0.608130 CCCGTGACTCTTCCATGACA 59.392 55.000 0.00 0.00 0.00 3.58
1006 1069 1.404717 CCCGTGACTCTTCCATGACAG 60.405 57.143 0.00 0.00 0.00 3.51
1041 1104 2.386064 TACCACACTCACGCCAACCC 62.386 60.000 0.00 0.00 0.00 4.11
1074 1137 2.187424 GAGCAGCAGAGCCTGAGG 59.813 66.667 0.00 0.00 34.77 3.86
1075 1138 2.607134 AGCAGCAGAGCCTGAGGT 60.607 61.111 0.00 1.45 34.77 3.85
1154 1217 0.176680 ATCATCTTCGCCAGCTTCGT 59.823 50.000 5.21 0.00 0.00 3.85
1179 1242 4.154347 GTCCTGCTCCTCCTGGCG 62.154 72.222 0.00 0.00 0.00 5.69
1245 1308 1.679305 GACCACGGAGCTCCTCTCA 60.679 63.158 29.73 0.00 43.70 3.27
1248 1311 2.757917 ACGGAGCTCCTCTCAGCC 60.758 66.667 29.73 2.16 43.70 4.85
1257 1320 3.114616 CTCTCAGCCAACGCCACG 61.115 66.667 0.00 0.00 34.57 4.94
1482 1545 3.807538 GGCATGACAGTGCAGGCG 61.808 66.667 14.73 0.00 45.70 5.52
1821 1918 2.527100 CGAGTGACTCCCGATTTGTAC 58.473 52.381 7.07 0.00 0.00 2.90
1929 2060 8.637986 TGTTTTGCTTTTTATGTAGGACTCAAT 58.362 29.630 0.00 0.00 0.00 2.57
1970 2101 5.627499 TTTACAGCCATGACAAATCAGAC 57.373 39.130 0.00 0.00 38.57 3.51
2015 2148 5.357742 TTGCAGAGGATAGCAATGTTAGA 57.642 39.130 0.00 0.00 44.98 2.10
2016 2149 5.357742 TGCAGAGGATAGCAATGTTAGAA 57.642 39.130 0.00 0.00 37.90 2.10
2017 2150 5.363101 TGCAGAGGATAGCAATGTTAGAAG 58.637 41.667 0.00 0.00 37.90 2.85
2018 2151 4.754114 GCAGAGGATAGCAATGTTAGAAGG 59.246 45.833 0.00 0.00 0.00 3.46
2019 2152 5.303971 CAGAGGATAGCAATGTTAGAAGGG 58.696 45.833 0.00 0.00 0.00 3.95
2020 2153 5.070981 CAGAGGATAGCAATGTTAGAAGGGA 59.929 44.000 0.00 0.00 0.00 4.20
2021 2154 5.848921 AGAGGATAGCAATGTTAGAAGGGAT 59.151 40.000 0.00 0.00 0.00 3.85
2022 2155 7.019388 AGAGGATAGCAATGTTAGAAGGGATA 58.981 38.462 0.00 0.00 0.00 2.59
2023 2156 7.514127 AGAGGATAGCAATGTTAGAAGGGATAA 59.486 37.037 0.00 0.00 0.00 1.75
2024 2157 8.045720 AGGATAGCAATGTTAGAAGGGATAAA 57.954 34.615 0.00 0.00 0.00 1.40
2025 2158 8.160106 AGGATAGCAATGTTAGAAGGGATAAAG 58.840 37.037 0.00 0.00 0.00 1.85
2026 2159 8.157476 GGATAGCAATGTTAGAAGGGATAAAGA 58.843 37.037 0.00 0.00 0.00 2.52
2027 2160 9.213799 GATAGCAATGTTAGAAGGGATAAAGAG 57.786 37.037 0.00 0.00 0.00 2.85
2028 2161 6.360618 AGCAATGTTAGAAGGGATAAAGAGG 58.639 40.000 0.00 0.00 0.00 3.69
2029 2162 5.532779 GCAATGTTAGAAGGGATAAAGAGGG 59.467 44.000 0.00 0.00 0.00 4.30
2030 2163 6.634955 GCAATGTTAGAAGGGATAAAGAGGGA 60.635 42.308 0.00 0.00 0.00 4.20
2031 2164 7.521669 CAATGTTAGAAGGGATAAAGAGGGAT 58.478 38.462 0.00 0.00 0.00 3.85
2032 2165 7.713704 ATGTTAGAAGGGATAAAGAGGGATT 57.286 36.000 0.00 0.00 0.00 3.01
2033 2166 6.900194 TGTTAGAAGGGATAAAGAGGGATTG 58.100 40.000 0.00 0.00 0.00 2.67
2034 2167 6.126478 TGTTAGAAGGGATAAAGAGGGATTGG 60.126 42.308 0.00 0.00 0.00 3.16
2035 2168 4.384465 AGAAGGGATAAAGAGGGATTGGT 58.616 43.478 0.00 0.00 0.00 3.67
2036 2169 4.166919 AGAAGGGATAAAGAGGGATTGGTG 59.833 45.833 0.00 0.00 0.00 4.17
2037 2170 3.747852 AGGGATAAAGAGGGATTGGTGA 58.252 45.455 0.00 0.00 0.00 4.02
2038 2171 4.119155 AGGGATAAAGAGGGATTGGTGAA 58.881 43.478 0.00 0.00 0.00 3.18
2039 2172 4.544152 AGGGATAAAGAGGGATTGGTGAAA 59.456 41.667 0.00 0.00 0.00 2.69
2040 2173 5.196574 AGGGATAAAGAGGGATTGGTGAAAT 59.803 40.000 0.00 0.00 0.00 2.17
2041 2174 5.536538 GGGATAAAGAGGGATTGGTGAAATC 59.463 44.000 0.00 0.00 43.52 2.17
2042 2175 6.129179 GGATAAAGAGGGATTGGTGAAATCA 58.871 40.000 0.94 0.00 45.69 2.57
2043 2176 6.779539 GGATAAAGAGGGATTGGTGAAATCAT 59.220 38.462 0.94 0.00 45.69 2.45
2044 2177 7.288621 GGATAAAGAGGGATTGGTGAAATCATT 59.711 37.037 0.94 0.00 45.69 2.57
2045 2178 6.535963 AAAGAGGGATTGGTGAAATCATTC 57.464 37.500 0.94 0.00 45.69 2.67
2046 2179 4.202441 AGAGGGATTGGTGAAATCATTCG 58.798 43.478 0.94 0.00 45.69 3.34
2047 2180 3.947834 GAGGGATTGGTGAAATCATTCGT 59.052 43.478 0.94 0.00 45.69 3.85
2048 2181 4.344104 AGGGATTGGTGAAATCATTCGTT 58.656 39.130 0.94 0.00 45.69 3.85
2049 2182 4.158394 AGGGATTGGTGAAATCATTCGTTG 59.842 41.667 0.94 0.00 45.69 4.10
2050 2183 4.082245 GGGATTGGTGAAATCATTCGTTGT 60.082 41.667 0.94 0.00 45.69 3.32
2051 2184 5.124776 GGGATTGGTGAAATCATTCGTTGTA 59.875 40.000 0.94 0.00 45.69 2.41
2052 2185 6.183360 GGGATTGGTGAAATCATTCGTTGTAT 60.183 38.462 0.94 0.00 45.69 2.29
2053 2186 7.257722 GGATTGGTGAAATCATTCGTTGTATT 58.742 34.615 0.94 0.00 45.69 1.89
2054 2187 7.220683 GGATTGGTGAAATCATTCGTTGTATTG 59.779 37.037 0.94 0.00 45.69 1.90
2055 2188 5.398169 TGGTGAAATCATTCGTTGTATTGC 58.602 37.500 0.00 0.00 38.46 3.56
2056 2189 5.182950 TGGTGAAATCATTCGTTGTATTGCT 59.817 36.000 0.00 0.00 38.46 3.91
2057 2190 6.092748 GGTGAAATCATTCGTTGTATTGCTT 58.907 36.000 0.00 0.00 38.46 3.91
2058 2191 6.033831 GGTGAAATCATTCGTTGTATTGCTTG 59.966 38.462 0.00 0.00 38.46 4.01
2059 2192 6.801377 GTGAAATCATTCGTTGTATTGCTTGA 59.199 34.615 0.00 0.00 38.46 3.02
2060 2193 7.007725 GTGAAATCATTCGTTGTATTGCTTGAG 59.992 37.037 0.00 0.00 38.46 3.02
2061 2194 6.500684 AATCATTCGTTGTATTGCTTGAGT 57.499 33.333 0.00 0.00 0.00 3.41
2062 2195 5.530519 TCATTCGTTGTATTGCTTGAGTC 57.469 39.130 0.00 0.00 0.00 3.36
2063 2196 5.237815 TCATTCGTTGTATTGCTTGAGTCT 58.762 37.500 0.00 0.00 0.00 3.24
2064 2197 5.348724 TCATTCGTTGTATTGCTTGAGTCTC 59.651 40.000 0.00 0.00 0.00 3.36
2065 2198 3.242518 TCGTTGTATTGCTTGAGTCTCG 58.757 45.455 0.00 0.00 0.00 4.04
2066 2199 2.987149 CGTTGTATTGCTTGAGTCTCGT 59.013 45.455 0.00 0.00 0.00 4.18
2067 2200 3.181540 CGTTGTATTGCTTGAGTCTCGTG 60.182 47.826 0.00 0.00 0.00 4.35
2068 2201 2.959516 TGTATTGCTTGAGTCTCGTGG 58.040 47.619 0.00 0.00 0.00 4.94
2069 2202 2.271800 GTATTGCTTGAGTCTCGTGGG 58.728 52.381 0.00 0.00 0.00 4.61
2070 2203 0.674895 ATTGCTTGAGTCTCGTGGGC 60.675 55.000 0.00 0.00 0.00 5.36
2071 2204 2.038814 TTGCTTGAGTCTCGTGGGCA 62.039 55.000 0.00 0.63 0.00 5.36
2072 2205 1.078848 GCTTGAGTCTCGTGGGCAT 60.079 57.895 0.00 0.00 0.00 4.40
2073 2206 0.175760 GCTTGAGTCTCGTGGGCATA 59.824 55.000 0.00 0.00 0.00 3.14
2074 2207 1.202580 GCTTGAGTCTCGTGGGCATAT 60.203 52.381 0.00 0.00 0.00 1.78
2075 2208 2.035961 GCTTGAGTCTCGTGGGCATATA 59.964 50.000 0.00 0.00 0.00 0.86
2076 2209 3.306364 GCTTGAGTCTCGTGGGCATATAT 60.306 47.826 0.00 0.00 0.00 0.86
2077 2210 4.082190 GCTTGAGTCTCGTGGGCATATATA 60.082 45.833 0.00 0.00 0.00 0.86
2078 2211 5.644977 TTGAGTCTCGTGGGCATATATAG 57.355 43.478 0.00 0.00 0.00 1.31
2079 2212 3.444034 TGAGTCTCGTGGGCATATATAGC 59.556 47.826 0.00 0.00 0.00 2.97
2080 2213 3.431415 AGTCTCGTGGGCATATATAGCA 58.569 45.455 8.68 0.00 0.00 3.49
2081 2214 3.832490 AGTCTCGTGGGCATATATAGCAA 59.168 43.478 8.68 0.00 0.00 3.91
2082 2215 4.467795 AGTCTCGTGGGCATATATAGCAAT 59.532 41.667 8.68 0.00 0.00 3.56
2083 2216 5.656859 AGTCTCGTGGGCATATATAGCAATA 59.343 40.000 8.68 0.00 0.00 1.90
2084 2217 6.325028 AGTCTCGTGGGCATATATAGCAATAT 59.675 38.462 8.68 0.00 32.87 1.28
2085 2218 6.986817 GTCTCGTGGGCATATATAGCAATATT 59.013 38.462 8.68 0.00 30.72 1.28
2086 2219 8.141909 GTCTCGTGGGCATATATAGCAATATTA 58.858 37.037 8.68 0.00 30.72 0.98
2087 2220 8.360390 TCTCGTGGGCATATATAGCAATATTAG 58.640 37.037 8.68 0.00 30.72 1.73
2126 2259 2.554142 CGCAGCATGGATGAAGTAGAA 58.446 47.619 0.00 0.00 35.86 2.10
2157 2290 3.033909 TCGGATGATCAGTCCAATCACT 58.966 45.455 18.43 0.00 36.04 3.41
2166 2299 0.741221 GTCCAATCACTCGTGAGGGC 60.741 60.000 12.96 5.29 43.61 5.19
2168 2301 1.811266 CAATCACTCGTGAGGGCGG 60.811 63.158 5.91 0.00 43.61 6.13
2169 2302 2.283529 AATCACTCGTGAGGGCGGT 61.284 57.895 5.91 0.00 43.61 5.68
2170 2303 2.507110 AATCACTCGTGAGGGCGGTG 62.507 60.000 5.91 0.00 43.61 4.94
2171 2304 3.991051 CACTCGTGAGGGCGGTGT 61.991 66.667 1.43 0.00 31.71 4.16
2172 2305 2.282674 ACTCGTGAGGGCGGTGTA 60.283 61.111 1.43 0.00 31.71 2.90
2173 2306 2.341101 ACTCGTGAGGGCGGTGTAG 61.341 63.158 1.43 0.00 31.71 2.74
2174 2307 3.064987 CTCGTGAGGGCGGTGTAGG 62.065 68.421 0.00 0.00 0.00 3.18
2175 2308 4.814294 CGTGAGGGCGGTGTAGGC 62.814 72.222 0.00 0.00 0.00 3.93
2258 2391 1.303799 GCATCGCATGGGGCTATGAG 61.304 60.000 10.21 3.72 45.80 2.90
2330 2463 0.388134 GAGCACAAGCCATGCACAAG 60.388 55.000 7.14 0.00 45.92 3.16
2387 2520 2.225791 TAATCGCAGCACTCACGGCT 62.226 55.000 0.00 0.00 43.77 5.52
2448 2585 1.618640 GGAGCGTGAAACAGTCGAGC 61.619 60.000 0.00 0.00 35.74 5.03
2463 2600 2.364842 AGCTGGATGGAGGCGAGT 60.365 61.111 0.00 0.00 0.00 4.18
2467 2604 0.250234 CTGGATGGAGGCGAGTTTGA 59.750 55.000 0.00 0.00 0.00 2.69
2500 2637 0.108804 TCCAATCAAGGCGACGACTC 60.109 55.000 2.24 0.00 0.00 3.36
2502 2639 1.272781 CAATCAAGGCGACGACTCTC 58.727 55.000 2.24 0.00 0.00 3.20
2596 2733 1.551019 GGTGAAGAGGCCGGGTAGTT 61.551 60.000 2.18 0.00 0.00 2.24
2609 2746 1.441515 GTAGTTGCGCTCGTGTCGA 60.442 57.895 9.73 0.00 0.00 4.20
2614 2751 0.728129 TTGCGCTCGTGTCGAAGTAG 60.728 55.000 9.73 0.00 34.74 2.57
2617 2754 0.247735 CGCTCGTGTCGAAGTAGAGG 60.248 60.000 9.47 0.00 34.74 3.69
2618 2755 0.803740 GCTCGTGTCGAAGTAGAGGT 59.196 55.000 9.47 0.00 34.74 3.85
2624 2761 0.388134 GTCGAAGTAGAGGTGCGCAA 60.388 55.000 14.00 0.00 0.00 4.85
2627 2764 1.797025 GAAGTAGAGGTGCGCAAGTT 58.203 50.000 14.00 4.98 41.68 2.66
2638 2775 3.276846 GCAAGTTGACGGCGGTGT 61.277 61.111 13.24 0.00 0.00 4.16
2646 2783 4.955774 ACGGCGGTGTTGGACGAC 62.956 66.667 13.24 0.00 38.46 4.34
2654 2791 1.449778 TGTTGGACGACGCAAACCA 60.450 52.632 0.00 0.00 0.00 3.67
2658 2795 0.250124 TGGACGACGCAAACCAATCT 60.250 50.000 0.00 0.00 0.00 2.40
2661 2798 2.481185 GGACGACGCAAACCAATCTTAA 59.519 45.455 0.00 0.00 0.00 1.85
2665 2802 4.214545 ACGACGCAAACCAATCTTAAATCA 59.785 37.500 0.00 0.00 0.00 2.57
2694 2831 4.085107 CCAAAAAGAAAACGCCGATCAAAG 60.085 41.667 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.664107 GACAGCTCCATACAGTTCAACA 58.336 45.455 0.00 0.00 0.00 3.33
1 2 2.668457 CGACAGCTCCATACAGTTCAAC 59.332 50.000 0.00 0.00 0.00 3.18
2 3 2.560981 TCGACAGCTCCATACAGTTCAA 59.439 45.455 0.00 0.00 0.00 2.69
3 4 2.164422 CTCGACAGCTCCATACAGTTCA 59.836 50.000 0.00 0.00 0.00 3.18
5 6 2.425312 CTCTCGACAGCTCCATACAGTT 59.575 50.000 0.00 0.00 0.00 3.16
6 7 2.020720 CTCTCGACAGCTCCATACAGT 58.979 52.381 0.00 0.00 0.00 3.55
7 8 2.290367 CTCTCTCGACAGCTCCATACAG 59.710 54.545 0.00 0.00 0.00 2.74
8 9 2.293170 CTCTCTCGACAGCTCCATACA 58.707 52.381 0.00 0.00 0.00 2.29
9 10 1.606668 CCTCTCTCGACAGCTCCATAC 59.393 57.143 0.00 0.00 0.00 2.39
10 11 1.490910 TCCTCTCTCGACAGCTCCATA 59.509 52.381 0.00 0.00 0.00 2.74
11 12 0.257328 TCCTCTCTCGACAGCTCCAT 59.743 55.000 0.00 0.00 0.00 3.41
12 13 0.257328 ATCCTCTCTCGACAGCTCCA 59.743 55.000 0.00 0.00 0.00 3.86
13 14 2.264005 TATCCTCTCTCGACAGCTCC 57.736 55.000 0.00 0.00 0.00 4.70
14 15 3.880490 TCTTTATCCTCTCTCGACAGCTC 59.120 47.826 0.00 0.00 0.00 4.09
15 16 3.892284 TCTTTATCCTCTCTCGACAGCT 58.108 45.455 0.00 0.00 0.00 4.24
16 17 4.499019 CCTTCTTTATCCTCTCTCGACAGC 60.499 50.000 0.00 0.00 0.00 4.40
17 18 4.642885 ACCTTCTTTATCCTCTCTCGACAG 59.357 45.833 0.00 0.00 0.00 3.51
18 19 4.601084 ACCTTCTTTATCCTCTCTCGACA 58.399 43.478 0.00 0.00 0.00 4.35
19 20 5.278120 GCTACCTTCTTTATCCTCTCTCGAC 60.278 48.000 0.00 0.00 0.00 4.20
20 21 4.822896 GCTACCTTCTTTATCCTCTCTCGA 59.177 45.833 0.00 0.00 0.00 4.04
21 22 4.825085 AGCTACCTTCTTTATCCTCTCTCG 59.175 45.833 0.00 0.00 0.00 4.04
22 23 6.072119 GCTAGCTACCTTCTTTATCCTCTCTC 60.072 46.154 7.70 0.00 0.00 3.20
23 24 5.773176 GCTAGCTACCTTCTTTATCCTCTCT 59.227 44.000 7.70 0.00 0.00 3.10
24 25 5.773176 AGCTAGCTACCTTCTTTATCCTCTC 59.227 44.000 17.69 0.00 0.00 3.20
25 26 5.711698 AGCTAGCTACCTTCTTTATCCTCT 58.288 41.667 17.69 0.00 0.00 3.69
26 27 6.183360 ACAAGCTAGCTACCTTCTTTATCCTC 60.183 42.308 19.70 0.00 0.00 3.71
27 28 5.663556 ACAAGCTAGCTACCTTCTTTATCCT 59.336 40.000 19.70 0.00 0.00 3.24
28 29 5.919755 ACAAGCTAGCTACCTTCTTTATCC 58.080 41.667 19.70 0.00 0.00 2.59
29 30 6.811954 AGACAAGCTAGCTACCTTCTTTATC 58.188 40.000 19.70 0.00 0.00 1.75
30 31 6.609616 AGAGACAAGCTAGCTACCTTCTTTAT 59.390 38.462 19.70 0.00 0.00 1.40
31 32 5.952947 AGAGACAAGCTAGCTACCTTCTTTA 59.047 40.000 19.70 0.00 0.00 1.85
32 33 4.775253 AGAGACAAGCTAGCTACCTTCTTT 59.225 41.667 19.70 9.47 0.00 2.52
33 34 4.159506 CAGAGACAAGCTAGCTACCTTCTT 59.840 45.833 19.70 0.00 0.00 2.52
34 35 3.699038 CAGAGACAAGCTAGCTACCTTCT 59.301 47.826 19.70 16.21 0.00 2.85
35 36 3.736740 GCAGAGACAAGCTAGCTACCTTC 60.737 52.174 19.70 13.57 0.00 3.46
36 37 2.167487 GCAGAGACAAGCTAGCTACCTT 59.833 50.000 19.70 4.46 0.00 3.50
37 38 1.754226 GCAGAGACAAGCTAGCTACCT 59.246 52.381 19.70 14.89 0.00 3.08
38 39 1.535015 CGCAGAGACAAGCTAGCTACC 60.535 57.143 19.70 10.12 0.00 3.18
39 40 1.133407 ACGCAGAGACAAGCTAGCTAC 59.867 52.381 19.70 12.60 0.00 3.58
40 41 1.402259 GACGCAGAGACAAGCTAGCTA 59.598 52.381 19.70 0.00 0.00 3.32
41 42 0.172352 GACGCAGAGACAAGCTAGCT 59.828 55.000 12.68 12.68 0.00 3.32
42 43 1.136872 CGACGCAGAGACAAGCTAGC 61.137 60.000 6.62 6.62 0.00 3.42
43 44 1.136872 GCGACGCAGAGACAAGCTAG 61.137 60.000 16.42 0.00 0.00 3.42
44 45 1.154016 GCGACGCAGAGACAAGCTA 60.154 57.895 16.42 0.00 0.00 3.32
45 46 2.431601 GCGACGCAGAGACAAGCT 60.432 61.111 16.42 0.00 0.00 3.74
46 47 3.832171 CGCGACGCAGAGACAAGC 61.832 66.667 21.35 0.00 0.00 4.01
62 63 4.812476 TCCATGAACGGCTCGGCG 62.812 66.667 11.46 11.46 0.00 6.46
63 64 2.892425 CTCCATGAACGGCTCGGC 60.892 66.667 0.00 0.00 0.00 5.54
64 65 2.892425 GCTCCATGAACGGCTCGG 60.892 66.667 0.00 0.00 0.00 4.63
65 66 3.257561 CGCTCCATGAACGGCTCG 61.258 66.667 0.00 0.00 0.00 5.03
66 67 1.424493 CTTCGCTCCATGAACGGCTC 61.424 60.000 0.00 0.00 0.00 4.70
67 68 1.448540 CTTCGCTCCATGAACGGCT 60.449 57.895 0.00 0.00 0.00 5.52
68 69 1.019278 TTCTTCGCTCCATGAACGGC 61.019 55.000 0.00 0.00 0.00 5.68
69 70 1.394917 CTTTCTTCGCTCCATGAACGG 59.605 52.381 0.00 0.00 0.00 4.44
70 71 2.069273 ACTTTCTTCGCTCCATGAACG 58.931 47.619 0.00 0.00 0.00 3.95
71 72 3.067106 TGACTTTCTTCGCTCCATGAAC 58.933 45.455 0.00 0.00 0.00 3.18
72 73 3.401033 TGACTTTCTTCGCTCCATGAA 57.599 42.857 0.00 0.00 0.00 2.57
73 74 3.401033 TTGACTTTCTTCGCTCCATGA 57.599 42.857 0.00 0.00 0.00 3.07
74 75 4.023707 AGTTTTGACTTTCTTCGCTCCATG 60.024 41.667 0.00 0.00 0.00 3.66
75 76 4.137543 AGTTTTGACTTTCTTCGCTCCAT 58.862 39.130 0.00 0.00 0.00 3.41
76 77 3.541632 AGTTTTGACTTTCTTCGCTCCA 58.458 40.909 0.00 0.00 0.00 3.86
77 78 4.989168 TCTAGTTTTGACTTTCTTCGCTCC 59.011 41.667 0.00 0.00 0.00 4.70
78 79 5.387547 CGTCTAGTTTTGACTTTCTTCGCTC 60.388 44.000 0.00 0.00 32.70 5.03
79 80 4.444720 CGTCTAGTTTTGACTTTCTTCGCT 59.555 41.667 0.00 0.00 32.70 4.93
80 81 4.208666 ACGTCTAGTTTTGACTTTCTTCGC 59.791 41.667 0.00 0.00 32.70 4.70
81 82 5.386120 CGACGTCTAGTTTTGACTTTCTTCG 60.386 44.000 14.70 0.00 32.70 3.79
82 83 5.609910 GCGACGTCTAGTTTTGACTTTCTTC 60.610 44.000 14.70 0.00 32.70 2.87
83 84 4.208666 GCGACGTCTAGTTTTGACTTTCTT 59.791 41.667 14.70 0.00 32.70 2.52
84 85 3.734735 GCGACGTCTAGTTTTGACTTTCT 59.265 43.478 14.70 0.00 32.70 2.52
85 86 3.488310 TGCGACGTCTAGTTTTGACTTTC 59.512 43.478 14.70 0.00 32.70 2.62
86 87 3.450578 TGCGACGTCTAGTTTTGACTTT 58.549 40.909 14.70 0.00 32.70 2.66
87 88 3.088194 TGCGACGTCTAGTTTTGACTT 57.912 42.857 14.70 0.00 32.70 3.01
88 89 2.787601 TGCGACGTCTAGTTTTGACT 57.212 45.000 14.70 0.00 32.70 3.41
89 90 2.097056 GGTTGCGACGTCTAGTTTTGAC 60.097 50.000 14.70 1.21 0.00 3.18
90 91 2.129607 GGTTGCGACGTCTAGTTTTGA 58.870 47.619 14.70 0.00 0.00 2.69
91 92 1.193874 GGGTTGCGACGTCTAGTTTTG 59.806 52.381 14.70 0.00 0.00 2.44
92 93 1.505425 GGGTTGCGACGTCTAGTTTT 58.495 50.000 14.70 0.00 0.00 2.43
93 94 0.320160 GGGGTTGCGACGTCTAGTTT 60.320 55.000 14.70 0.00 0.00 2.66
94 95 1.291272 GGGGTTGCGACGTCTAGTT 59.709 57.895 14.70 0.00 0.00 2.24
95 96 2.643232 GGGGGTTGCGACGTCTAGT 61.643 63.158 14.70 0.00 0.00 2.57
96 97 2.183555 GGGGGTTGCGACGTCTAG 59.816 66.667 14.70 0.00 0.00 2.43
97 98 3.751246 CGGGGGTTGCGACGTCTA 61.751 66.667 14.70 0.00 0.00 2.59
113 114 3.853330 CACGGATCTTGGCGCACG 61.853 66.667 10.83 4.10 0.00 5.34
114 115 4.166011 GCACGGATCTTGGCGCAC 62.166 66.667 10.83 0.00 0.00 5.34
115 116 4.695993 TGCACGGATCTTGGCGCA 62.696 61.111 10.83 0.00 0.00 6.09
116 117 3.869272 CTGCACGGATCTTGGCGC 61.869 66.667 0.00 0.00 0.00 6.53
117 118 3.197790 CCTGCACGGATCTTGGCG 61.198 66.667 0.00 0.00 33.16 5.69
118 119 1.675641 AACCTGCACGGATCTTGGC 60.676 57.895 8.91 0.00 36.31 4.52
119 120 0.321564 TCAACCTGCACGGATCTTGG 60.322 55.000 8.91 0.00 36.31 3.61
120 121 1.742761 ATCAACCTGCACGGATCTTG 58.257 50.000 8.91 4.17 36.31 3.02
121 122 2.496899 AATCAACCTGCACGGATCTT 57.503 45.000 8.91 0.00 36.31 2.40
122 123 2.496899 AAATCAACCTGCACGGATCT 57.503 45.000 8.91 0.00 36.31 2.75
123 124 3.438781 TGTTAAATCAACCTGCACGGATC 59.561 43.478 8.91 0.00 36.20 3.36
124 125 3.417101 TGTTAAATCAACCTGCACGGAT 58.583 40.909 8.91 0.00 36.20 4.18
125 126 2.811431 CTGTTAAATCAACCTGCACGGA 59.189 45.455 8.91 0.00 36.20 4.69
126 127 2.668279 GCTGTTAAATCAACCTGCACGG 60.668 50.000 1.16 1.16 36.33 4.94
127 128 2.584791 GCTGTTAAATCAACCTGCACG 58.415 47.619 0.00 0.00 36.33 5.34
128 129 2.295909 TGGCTGTTAAATCAACCTGCAC 59.704 45.455 0.00 0.00 37.34 4.57
129 130 2.557924 CTGGCTGTTAAATCAACCTGCA 59.442 45.455 0.00 0.00 37.34 4.41
130 131 2.672195 GCTGGCTGTTAAATCAACCTGC 60.672 50.000 2.91 2.91 39.74 4.85
131 132 2.414559 CGCTGGCTGTTAAATCAACCTG 60.415 50.000 0.00 0.00 36.20 4.00
132 133 1.812571 CGCTGGCTGTTAAATCAACCT 59.187 47.619 0.00 0.00 36.20 3.50
133 134 1.135402 CCGCTGGCTGTTAAATCAACC 60.135 52.381 0.00 0.00 36.20 3.77
134 135 1.732405 GCCGCTGGCTGTTAAATCAAC 60.732 52.381 11.61 0.00 46.69 3.18
135 136 0.525761 GCCGCTGGCTGTTAAATCAA 59.474 50.000 11.61 0.00 46.69 2.57
136 137 2.179764 GCCGCTGGCTGTTAAATCA 58.820 52.632 11.61 0.00 46.69 2.57
160 161 6.184266 TTAGTTTTCTAGGAGCCCAGAGCG 62.184 50.000 0.00 0.00 39.11 5.03
161 162 1.557371 AGTTTTCTAGGAGCCCAGAGC 59.443 52.381 0.00 0.00 44.25 4.09
162 163 4.468153 AGTTAGTTTTCTAGGAGCCCAGAG 59.532 45.833 0.00 0.00 33.61 3.35
163 164 4.426704 AGTTAGTTTTCTAGGAGCCCAGA 58.573 43.478 0.00 0.00 33.61 3.86
164 165 4.828072 AGTTAGTTTTCTAGGAGCCCAG 57.172 45.455 0.00 0.00 33.61 4.45
165 166 4.595781 TGAAGTTAGTTTTCTAGGAGCCCA 59.404 41.667 0.00 0.00 33.61 5.36
166 167 5.161943 TGAAGTTAGTTTTCTAGGAGCCC 57.838 43.478 0.00 0.00 33.61 5.19
167 168 5.795972 ACTGAAGTTAGTTTTCTAGGAGCC 58.204 41.667 0.00 0.00 33.61 4.70
168 169 7.731882 AAACTGAAGTTAGTTTTCTAGGAGC 57.268 36.000 0.00 0.00 45.85 4.70
226 227 5.631512 GCTAAAAATACGCACATTTTCCACA 59.368 36.000 5.89 0.00 37.17 4.17
227 228 5.631512 TGCTAAAAATACGCACATTTTCCAC 59.368 36.000 5.89 1.14 37.17 4.02
338 339 2.793278 AGGAACCACGCAAATGAAAC 57.207 45.000 0.00 0.00 0.00 2.78
349 350 6.759497 ATTACTTGCAAATCTAGGAACCAC 57.241 37.500 0.00 0.00 0.00 4.16
401 402 5.998981 TGACACGCCCTCTAAATAAGAAAAA 59.001 36.000 0.00 0.00 32.46 1.94
402 403 5.553123 TGACACGCCCTCTAAATAAGAAAA 58.447 37.500 0.00 0.00 32.46 2.29
403 404 5.155278 TGACACGCCCTCTAAATAAGAAA 57.845 39.130 0.00 0.00 32.46 2.52
404 405 4.811969 TGACACGCCCTCTAAATAAGAA 57.188 40.909 0.00 0.00 32.46 2.52
405 406 4.404394 TCATGACACGCCCTCTAAATAAGA 59.596 41.667 0.00 0.00 0.00 2.10
406 407 4.693283 TCATGACACGCCCTCTAAATAAG 58.307 43.478 0.00 0.00 0.00 1.73
407 408 4.746535 TCATGACACGCCCTCTAAATAA 57.253 40.909 0.00 0.00 0.00 1.40
408 409 4.955811 ATCATGACACGCCCTCTAAATA 57.044 40.909 0.00 0.00 0.00 1.40
409 410 3.845781 ATCATGACACGCCCTCTAAAT 57.154 42.857 0.00 0.00 0.00 1.40
410 411 3.627395 AATCATGACACGCCCTCTAAA 57.373 42.857 0.00 0.00 0.00 1.85
411 412 3.197766 AGAAATCATGACACGCCCTCTAA 59.802 43.478 0.00 0.00 0.00 2.10
412 413 2.766263 AGAAATCATGACACGCCCTCTA 59.234 45.455 0.00 0.00 0.00 2.43
413 414 1.556911 AGAAATCATGACACGCCCTCT 59.443 47.619 0.00 0.00 0.00 3.69
414 415 1.667724 CAGAAATCATGACACGCCCTC 59.332 52.381 0.00 0.00 0.00 4.30
415 416 1.278985 TCAGAAATCATGACACGCCCT 59.721 47.619 0.00 0.00 0.00 5.19
416 417 1.737838 TCAGAAATCATGACACGCCC 58.262 50.000 0.00 0.00 0.00 6.13
417 418 4.572389 ACTTATCAGAAATCATGACACGCC 59.428 41.667 0.00 0.00 0.00 5.68
418 419 5.725110 ACTTATCAGAAATCATGACACGC 57.275 39.130 0.00 0.00 0.00 5.34
419 420 8.955061 AAAAACTTATCAGAAATCATGACACG 57.045 30.769 0.00 0.00 0.00 4.49
420 421 9.897744 TGAAAAACTTATCAGAAATCATGACAC 57.102 29.630 0.00 0.00 0.00 3.67
488 489 0.459237 CAACCTGTTGGCGCACAAAA 60.459 50.000 10.83 5.49 41.58 2.44
553 558 5.212532 TGAAACCATTTGGATTTGGTCTG 57.787 39.130 3.01 0.00 45.44 3.51
581 586 3.316868 CCACGGTGTAAACTTGACCATTT 59.683 43.478 7.45 0.00 0.00 2.32
659 667 6.458210 CCATGCTCTAATTGAAAAAGGTGTT 58.542 36.000 0.00 0.00 0.00 3.32
661 669 4.866486 GCCATGCTCTAATTGAAAAAGGTG 59.134 41.667 0.00 0.00 0.00 4.00
683 691 5.003804 TCAGTTTCTGAAACCTAATCTGGC 58.996 41.667 25.22 1.52 42.34 4.85
706 714 7.963532 TCTTACAAAACCATCACTCTCTACTT 58.036 34.615 0.00 0.00 0.00 2.24
746 754 0.667487 CGACACCGTGACTCATGCTT 60.667 55.000 5.28 0.00 0.00 3.91
884 906 5.798125 TGATGATTTTAACAAGCCAACCA 57.202 34.783 0.00 0.00 0.00 3.67
904 926 4.186926 CGATCTCCAAGAATCTGCTTTGA 58.813 43.478 0.00 0.00 0.00 2.69
911 933 3.647636 TCCTTCCGATCTCCAAGAATCT 58.352 45.455 0.00 0.00 0.00 2.40
948 1008 2.477189 GCAAAAACGTACACAGCACACT 60.477 45.455 0.00 0.00 0.00 3.55
955 1015 5.454877 GGTTTTATTCGCAAAAACGTACACA 59.545 36.000 11.23 0.00 44.20 3.72
958 1021 6.678540 ATGGTTTTATTCGCAAAAACGTAC 57.321 33.333 11.23 0.00 44.20 3.67
959 1022 8.967552 AATATGGTTTTATTCGCAAAAACGTA 57.032 26.923 11.23 9.76 44.20 3.57
960 1023 7.062488 GGAATATGGTTTTATTCGCAAAAACGT 59.938 33.333 11.23 8.36 44.20 3.99
961 1024 7.387945 GGAATATGGTTTTATTCGCAAAAACG 58.612 34.615 11.23 0.00 44.20 3.60
962 1025 7.201574 GGGGAATATGGTTTTATTCGCAAAAAC 60.202 37.037 17.50 9.82 45.87 2.43
963 1026 6.819146 GGGGAATATGGTTTTATTCGCAAAAA 59.181 34.615 17.50 0.00 45.87 1.94
968 1031 3.566742 ACGGGGAATATGGTTTTATTCGC 59.433 43.478 10.91 10.91 44.53 4.70
969 1032 4.817464 TCACGGGGAATATGGTTTTATTCG 59.183 41.667 0.00 0.00 38.79 3.34
970 1033 5.826208 AGTCACGGGGAATATGGTTTTATTC 59.174 40.000 0.00 0.00 37.70 1.75
971 1034 5.762279 AGTCACGGGGAATATGGTTTTATT 58.238 37.500 0.00 0.00 0.00 1.40
972 1035 5.132144 AGAGTCACGGGGAATATGGTTTTAT 59.868 40.000 0.00 0.00 0.00 1.40
973 1036 4.472108 AGAGTCACGGGGAATATGGTTTTA 59.528 41.667 0.00 0.00 0.00 1.52
975 1038 2.844348 AGAGTCACGGGGAATATGGTTT 59.156 45.455 0.00 0.00 0.00 3.27
976 1039 2.478292 AGAGTCACGGGGAATATGGTT 58.522 47.619 0.00 0.00 0.00 3.67
977 1040 2.176247 AGAGTCACGGGGAATATGGT 57.824 50.000 0.00 0.00 0.00 3.55
978 1041 2.224305 GGAAGAGTCACGGGGAATATGG 60.224 54.545 0.00 0.00 0.00 2.74
979 1042 2.434336 TGGAAGAGTCACGGGGAATATG 59.566 50.000 0.00 0.00 0.00 1.78
980 1043 2.759355 TGGAAGAGTCACGGGGAATAT 58.241 47.619 0.00 0.00 0.00 1.28
981 1044 2.241281 TGGAAGAGTCACGGGGAATA 57.759 50.000 0.00 0.00 0.00 1.75
982 1045 1.210478 CATGGAAGAGTCACGGGGAAT 59.790 52.381 0.00 0.00 0.00 3.01
983 1046 0.613260 CATGGAAGAGTCACGGGGAA 59.387 55.000 0.00 0.00 0.00 3.97
984 1047 0.252057 TCATGGAAGAGTCACGGGGA 60.252 55.000 0.00 0.00 0.00 4.81
985 1048 0.108138 GTCATGGAAGAGTCACGGGG 60.108 60.000 0.00 0.00 0.00 5.73
986 1049 0.608130 TGTCATGGAAGAGTCACGGG 59.392 55.000 0.00 0.00 0.00 5.28
987 1050 2.001812 CTGTCATGGAAGAGTCACGG 57.998 55.000 0.00 0.00 0.00 4.94
988 1051 1.067283 AGCTGTCATGGAAGAGTCACG 60.067 52.381 0.00 0.00 0.00 4.35
989 1052 2.233431 AGAGCTGTCATGGAAGAGTCAC 59.767 50.000 0.00 0.00 0.00 3.67
990 1053 2.495270 GAGAGCTGTCATGGAAGAGTCA 59.505 50.000 5.89 0.00 0.00 3.41
991 1054 2.495270 TGAGAGCTGTCATGGAAGAGTC 59.505 50.000 9.94 0.00 0.00 3.36
992 1055 2.233431 GTGAGAGCTGTCATGGAAGAGT 59.767 50.000 17.54 0.00 0.00 3.24
993 1056 2.496871 AGTGAGAGCTGTCATGGAAGAG 59.503 50.000 17.54 0.00 0.00 2.85
994 1057 2.233186 CAGTGAGAGCTGTCATGGAAGA 59.767 50.000 17.54 0.00 0.00 2.87
995 1058 2.028294 ACAGTGAGAGCTGTCATGGAAG 60.028 50.000 17.54 7.92 45.63 3.46
996 1059 1.973515 ACAGTGAGAGCTGTCATGGAA 59.026 47.619 17.54 0.00 45.63 3.53
997 1060 1.274447 CACAGTGAGAGCTGTCATGGA 59.726 52.381 17.54 0.00 46.81 3.41
998 1061 1.723220 CACAGTGAGAGCTGTCATGG 58.277 55.000 17.54 14.04 46.81 3.66
999 1062 1.077123 GCACAGTGAGAGCTGTCATG 58.923 55.000 17.54 16.83 46.81 3.07
1000 1063 0.975135 AGCACAGTGAGAGCTGTCAT 59.025 50.000 17.54 3.53 46.81 3.06
1001 1064 0.316522 GAGCACAGTGAGAGCTGTCA 59.683 55.000 9.94 9.94 46.81 3.58
1002 1065 0.316522 TGAGCACAGTGAGAGCTGTC 59.683 55.000 4.15 3.38 46.81 3.51
1004 1067 2.538437 GTATGAGCACAGTGAGAGCTG 58.462 52.381 4.15 0.00 44.53 4.24
1006 1069 1.205655 TGGTATGAGCACAGTGAGAGC 59.794 52.381 4.15 0.00 0.00 4.09
1019 1082 0.682292 TTGGCGTGAGTGTGGTATGA 59.318 50.000 0.00 0.00 0.00 2.15
1055 1118 4.447989 TCAGGCTCTGCTGCTCGC 62.448 66.667 0.00 0.39 39.77 5.03
1056 1119 2.202770 CTCAGGCTCTGCTGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
1057 1120 2.187424 CCTCAGGCTCTGCTGCTC 59.813 66.667 0.00 0.00 0.00 4.26
1058 1121 2.607134 ACCTCAGGCTCTGCTGCT 60.607 61.111 0.00 0.00 0.00 4.24
1059 1122 2.436292 CACCTCAGGCTCTGCTGC 60.436 66.667 0.00 0.00 0.00 5.25
1060 1123 2.436292 GCACCTCAGGCTCTGCTG 60.436 66.667 0.00 0.00 0.00 4.41
1061 1124 2.299429 ATGCACCTCAGGCTCTGCT 61.299 57.895 6.36 0.00 0.00 4.24
1062 1125 2.113433 CATGCACCTCAGGCTCTGC 61.113 63.158 0.00 0.00 0.00 4.26
1063 1126 0.743701 GACATGCACCTCAGGCTCTG 60.744 60.000 0.00 0.00 0.00 3.35
1130 1193 1.522355 CTGGCGAAGATGATGGCGT 60.522 57.895 0.00 0.00 0.00 5.68
1154 1217 3.749064 GGAGCAGGACGAGCACGA 61.749 66.667 11.40 0.00 42.66 4.35
1473 1536 3.560251 ACCTTGTCCGCCTGCACT 61.560 61.111 0.00 0.00 0.00 4.40
1952 2083 2.349590 TCGTCTGATTTGTCATGGCTG 58.650 47.619 0.00 0.00 0.00 4.85
2010 2143 6.126449 ACCAATCCCTCTTTATCCCTTCTAAC 60.126 42.308 0.00 0.00 0.00 2.34
2014 2147 4.166144 TCACCAATCCCTCTTTATCCCTTC 59.834 45.833 0.00 0.00 0.00 3.46
2015 2148 4.119155 TCACCAATCCCTCTTTATCCCTT 58.881 43.478 0.00 0.00 0.00 3.95
2016 2149 3.747852 TCACCAATCCCTCTTTATCCCT 58.252 45.455 0.00 0.00 0.00 4.20
2017 2150 4.519906 TTCACCAATCCCTCTTTATCCC 57.480 45.455 0.00 0.00 0.00 3.85
2018 2151 6.129179 TGATTTCACCAATCCCTCTTTATCC 58.871 40.000 0.00 0.00 40.80 2.59
2019 2152 7.830099 ATGATTTCACCAATCCCTCTTTATC 57.170 36.000 0.00 0.00 40.80 1.75
2020 2153 7.013655 CGAATGATTTCACCAATCCCTCTTTAT 59.986 37.037 0.00 0.00 40.80 1.40
2021 2154 6.318648 CGAATGATTTCACCAATCCCTCTTTA 59.681 38.462 0.00 0.00 40.80 1.85
2022 2155 5.126061 CGAATGATTTCACCAATCCCTCTTT 59.874 40.000 0.00 0.00 40.80 2.52
2023 2156 4.641989 CGAATGATTTCACCAATCCCTCTT 59.358 41.667 0.00 0.00 40.80 2.85
2024 2157 4.202441 CGAATGATTTCACCAATCCCTCT 58.798 43.478 0.00 0.00 40.80 3.69
2025 2158 3.947834 ACGAATGATTTCACCAATCCCTC 59.052 43.478 0.00 0.00 40.80 4.30
2026 2159 3.968265 ACGAATGATTTCACCAATCCCT 58.032 40.909 0.00 0.00 40.80 4.20
2027 2160 4.082245 ACAACGAATGATTTCACCAATCCC 60.082 41.667 0.00 0.00 40.80 3.85
2028 2161 5.059404 ACAACGAATGATTTCACCAATCC 57.941 39.130 0.00 0.00 40.80 3.01
2029 2162 7.253750 GCAATACAACGAATGATTTCACCAATC 60.254 37.037 0.00 0.00 41.76 2.67
2030 2163 6.531240 GCAATACAACGAATGATTTCACCAAT 59.469 34.615 0.00 0.00 0.00 3.16
2031 2164 5.861251 GCAATACAACGAATGATTTCACCAA 59.139 36.000 0.00 0.00 0.00 3.67
2032 2165 5.182950 AGCAATACAACGAATGATTTCACCA 59.817 36.000 0.00 0.00 0.00 4.17
2033 2166 5.640732 AGCAATACAACGAATGATTTCACC 58.359 37.500 0.00 0.00 0.00 4.02
2034 2167 6.801377 TCAAGCAATACAACGAATGATTTCAC 59.199 34.615 0.00 0.00 0.00 3.18
2035 2168 6.907741 TCAAGCAATACAACGAATGATTTCA 58.092 32.000 0.00 0.00 0.00 2.69
2036 2169 7.023575 ACTCAAGCAATACAACGAATGATTTC 58.976 34.615 0.00 0.00 0.00 2.17
2037 2170 6.913170 ACTCAAGCAATACAACGAATGATTT 58.087 32.000 0.00 0.00 0.00 2.17
2038 2171 6.372659 AGACTCAAGCAATACAACGAATGATT 59.627 34.615 0.00 0.00 0.00 2.57
2039 2172 5.877012 AGACTCAAGCAATACAACGAATGAT 59.123 36.000 0.00 0.00 0.00 2.45
2040 2173 5.237815 AGACTCAAGCAATACAACGAATGA 58.762 37.500 0.00 0.00 0.00 2.57
2041 2174 5.536554 AGACTCAAGCAATACAACGAATG 57.463 39.130 0.00 0.00 0.00 2.67
2042 2175 4.327357 CGAGACTCAAGCAATACAACGAAT 59.673 41.667 2.82 0.00 0.00 3.34
2043 2176 3.673338 CGAGACTCAAGCAATACAACGAA 59.327 43.478 2.82 0.00 0.00 3.85
2044 2177 3.242518 CGAGACTCAAGCAATACAACGA 58.757 45.455 2.82 0.00 0.00 3.85
2045 2178 2.987149 ACGAGACTCAAGCAATACAACG 59.013 45.455 2.82 0.00 0.00 4.10
2046 2179 3.123621 CCACGAGACTCAAGCAATACAAC 59.876 47.826 2.82 0.00 0.00 3.32
2047 2180 3.325870 CCACGAGACTCAAGCAATACAA 58.674 45.455 2.82 0.00 0.00 2.41
2048 2181 2.353704 CCCACGAGACTCAAGCAATACA 60.354 50.000 2.82 0.00 0.00 2.29
2049 2182 2.271800 CCCACGAGACTCAAGCAATAC 58.728 52.381 2.82 0.00 0.00 1.89
2050 2183 1.405526 GCCCACGAGACTCAAGCAATA 60.406 52.381 2.82 0.00 0.00 1.90
2051 2184 0.674895 GCCCACGAGACTCAAGCAAT 60.675 55.000 2.82 0.00 0.00 3.56
2052 2185 1.301716 GCCCACGAGACTCAAGCAA 60.302 57.895 2.82 0.00 0.00 3.91
2053 2186 1.830587 ATGCCCACGAGACTCAAGCA 61.831 55.000 2.82 5.79 0.00 3.91
2054 2187 0.175760 TATGCCCACGAGACTCAAGC 59.824 55.000 2.82 0.00 0.00 4.01
2055 2188 2.898729 ATATGCCCACGAGACTCAAG 57.101 50.000 2.82 0.00 0.00 3.02
2056 2189 4.082190 GCTATATATGCCCACGAGACTCAA 60.082 45.833 2.82 0.00 0.00 3.02
2057 2190 3.444034 GCTATATATGCCCACGAGACTCA 59.556 47.826 2.82 0.00 0.00 3.41
2058 2191 3.444034 TGCTATATATGCCCACGAGACTC 59.556 47.826 0.00 0.00 0.00 3.36
2059 2192 3.431415 TGCTATATATGCCCACGAGACT 58.569 45.455 0.00 0.00 0.00 3.24
2060 2193 3.868757 TGCTATATATGCCCACGAGAC 57.131 47.619 0.00 0.00 0.00 3.36
2061 2194 6.731292 ATATTGCTATATATGCCCACGAGA 57.269 37.500 0.00 0.00 0.00 4.04
2062 2195 8.360390 TCTAATATTGCTATATATGCCCACGAG 58.640 37.037 0.94 0.00 0.00 4.18
2063 2196 8.245195 TCTAATATTGCTATATATGCCCACGA 57.755 34.615 0.94 0.00 0.00 4.35
2064 2197 8.765219 GTTCTAATATTGCTATATATGCCCACG 58.235 37.037 0.94 0.00 0.00 4.94
2065 2198 9.838339 AGTTCTAATATTGCTATATATGCCCAC 57.162 33.333 0.94 0.00 0.00 4.61
2066 2199 9.836864 CAGTTCTAATATTGCTATATATGCCCA 57.163 33.333 0.94 0.00 0.00 5.36
2067 2200 9.277783 CCAGTTCTAATATTGCTATATATGCCC 57.722 37.037 0.94 0.00 0.00 5.36
2068 2201 8.778358 GCCAGTTCTAATATTGCTATATATGCC 58.222 37.037 0.94 0.00 0.00 4.40
2069 2202 8.778358 GGCCAGTTCTAATATTGCTATATATGC 58.222 37.037 0.00 0.00 0.00 3.14
2070 2203 9.836864 TGGCCAGTTCTAATATTGCTATATATG 57.163 33.333 0.00 0.00 0.00 1.78
2072 2205 9.267071 TCTGGCCAGTTCTAATATTGCTATATA 57.733 33.333 31.58 2.81 0.00 0.86
2073 2206 8.150827 TCTGGCCAGTTCTAATATTGCTATAT 57.849 34.615 31.58 0.00 0.00 0.86
2074 2207 7.553504 TCTGGCCAGTTCTAATATTGCTATA 57.446 36.000 31.58 3.54 0.00 1.31
2075 2208 6.439636 TCTGGCCAGTTCTAATATTGCTAT 57.560 37.500 31.58 0.00 0.00 2.97
2076 2209 5.887214 TCTGGCCAGTTCTAATATTGCTA 57.113 39.130 31.58 4.68 0.00 3.49
2077 2210 4.778213 TCTGGCCAGTTCTAATATTGCT 57.222 40.909 31.58 0.00 0.00 3.91
2078 2211 4.153117 CGATCTGGCCAGTTCTAATATTGC 59.847 45.833 31.55 11.36 0.00 3.56
2079 2212 4.692625 CCGATCTGGCCAGTTCTAATATTG 59.307 45.833 31.55 20.29 0.00 1.90
2080 2213 4.348168 ACCGATCTGGCCAGTTCTAATATT 59.652 41.667 31.55 13.25 43.94 1.28
2081 2214 3.904339 ACCGATCTGGCCAGTTCTAATAT 59.096 43.478 31.55 18.69 43.94 1.28
2082 2215 3.305720 ACCGATCTGGCCAGTTCTAATA 58.694 45.455 31.55 15.03 43.94 0.98
2083 2216 2.103263 GACCGATCTGGCCAGTTCTAAT 59.897 50.000 31.55 19.98 43.94 1.73
2084 2217 1.480954 GACCGATCTGGCCAGTTCTAA 59.519 52.381 31.55 16.38 43.94 2.10
2085 2218 1.112113 GACCGATCTGGCCAGTTCTA 58.888 55.000 31.55 16.73 43.94 2.10
2086 2219 1.901085 GACCGATCTGGCCAGTTCT 59.099 57.895 31.55 19.75 43.94 3.01
2087 2220 1.519455 CGACCGATCTGGCCAGTTC 60.519 63.158 31.58 29.29 43.94 3.01
2112 2245 2.420129 GCCCGTGTTCTACTTCATCCAT 60.420 50.000 0.00 0.00 0.00 3.41
2140 2273 3.448660 TCACGAGTGATTGGACTGATCAT 59.551 43.478 1.24 0.00 36.07 2.45
2157 2290 3.066190 CCTACACCGCCCTCACGA 61.066 66.667 0.00 0.00 34.06 4.35
2166 2299 1.516386 CAGCTACACGCCTACACCG 60.516 63.158 0.00 0.00 40.39 4.94
2168 2301 0.458025 GACCAGCTACACGCCTACAC 60.458 60.000 0.00 0.00 40.39 2.90
2169 2302 1.888018 GACCAGCTACACGCCTACA 59.112 57.895 0.00 0.00 40.39 2.74
2170 2303 1.226603 CGACCAGCTACACGCCTAC 60.227 63.158 0.00 0.00 40.39 3.18
2171 2304 2.412323 CCGACCAGCTACACGCCTA 61.412 63.158 0.00 0.00 40.39 3.93
2172 2305 3.760035 CCGACCAGCTACACGCCT 61.760 66.667 0.00 0.00 40.39 5.52
2175 2308 4.415332 ACGCCGACCAGCTACACG 62.415 66.667 0.00 0.00 0.00 4.49
2238 2371 2.683859 CATAGCCCCATGCGATGCG 61.684 63.158 0.00 0.00 44.40 4.73
2239 2372 3.271014 CATAGCCCCATGCGATGC 58.729 61.111 0.00 0.00 44.40 3.91
2258 2391 0.805711 GTGTGTTGGCTTGTTGCACC 60.806 55.000 0.00 0.00 45.15 5.01
2304 2437 0.806868 ATGGCTTGTGCTCGTTCATG 59.193 50.000 0.00 0.00 39.59 3.07
2369 2502 3.121030 GCCGTGAGTGCTGCGATT 61.121 61.111 0.00 0.00 0.00 3.34
2387 2520 3.604494 CTCGTGCTACGCGTGTCCA 62.604 63.158 24.59 13.07 42.21 4.02
2390 2527 4.337060 TGCTCGTGCTACGCGTGT 62.337 61.111 24.59 6.91 42.21 4.49
2404 2541 1.293498 GACACGTCTCCCATGTGCT 59.707 57.895 0.00 0.00 44.95 4.40
2448 2585 0.250234 TCAAACTCGCCTCCATCCAG 59.750 55.000 0.00 0.00 0.00 3.86
2500 2637 4.099170 ACGTCGTTCTCCGCCGAG 62.099 66.667 0.00 0.00 41.04 4.63
2502 2639 4.394078 TCACGTCGTTCTCCGCCG 62.394 66.667 0.00 0.00 44.66 6.46
2525 2662 2.245532 GCCGTCATGCGCGTATTC 59.754 61.111 7.06 2.99 39.71 1.75
2569 2706 1.142097 GCCTCTTCACCGACTAGGC 59.858 63.158 0.00 0.00 46.52 3.93
2596 2733 1.154282 CTACTTCGACACGAGCGCA 60.154 57.895 11.47 0.00 37.14 6.09
2600 2737 1.466024 GCACCTCTACTTCGACACGAG 60.466 57.143 0.00 0.00 37.14 4.18
2601 2738 0.520404 GCACCTCTACTTCGACACGA 59.480 55.000 0.00 0.00 0.00 4.35
2602 2739 0.793478 CGCACCTCTACTTCGACACG 60.793 60.000 0.00 0.00 0.00 4.49
2609 2746 1.070134 TCAACTTGCGCACCTCTACTT 59.930 47.619 11.12 0.00 0.00 2.24
2614 2751 2.551270 CGTCAACTTGCGCACCTC 59.449 61.111 11.12 0.00 0.00 3.85
2624 2761 2.590575 CCAACACCGCCGTCAACT 60.591 61.111 0.00 0.00 0.00 3.16
2627 2764 4.953868 CGTCCAACACCGCCGTCA 62.954 66.667 0.00 0.00 0.00 4.35
2635 2772 1.010462 GGTTTGCGTCGTCCAACAC 60.010 57.895 0.00 0.00 0.00 3.32
2636 2773 1.025113 TTGGTTTGCGTCGTCCAACA 61.025 50.000 0.00 0.00 35.42 3.33
2638 2775 0.589223 GATTGGTTTGCGTCGTCCAA 59.411 50.000 12.67 12.67 42.81 3.53
2646 2783 7.359181 GGTTTTCTGATTTAAGATTGGTTTGCG 60.359 37.037 0.00 0.00 0.00 4.85
2647 2784 7.440856 TGGTTTTCTGATTTAAGATTGGTTTGC 59.559 33.333 0.00 0.00 0.00 3.68
2661 2798 6.183360 GGCGTTTTCTTTTTGGTTTTCTGATT 60.183 34.615 0.00 0.00 0.00 2.57
2665 2802 3.615056 CGGCGTTTTCTTTTTGGTTTTCT 59.385 39.130 0.00 0.00 0.00 2.52
2679 2816 4.838959 CGCTTTGATCGGCGTTTT 57.161 50.000 6.85 0.00 45.34 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.