Multiple sequence alignment - TraesCS1D01G301400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G301400 chr1D 100.000 4731 0 0 1 4731 399192000 399187270 0.000000e+00 8737.0
1 TraesCS1D01G301400 chr1D 90.024 411 33 4 1925 2331 399063674 399063268 4.190000e-145 525.0
2 TraesCS1D01G301400 chr1D 88.270 341 36 4 1394 1734 399064240 399063904 5.700000e-109 405.0
3 TraesCS1D01G301400 chr1D 95.109 184 5 4 2668 2851 178466300 178466479 2.150000e-73 287.0
4 TraesCS1D01G301400 chr1B 97.308 2637 65 5 1 2634 535387886 535385253 0.000000e+00 4471.0
5 TraesCS1D01G301400 chr1B 95.578 995 41 2 2840 3832 535385106 535384113 0.000000e+00 1591.0
6 TraesCS1D01G301400 chr1B 89.061 905 82 5 2840 3731 535144162 535143262 0.000000e+00 1107.0
7 TraesCS1D01G301400 chr1B 91.619 704 40 10 1935 2634 535145000 535144312 0.000000e+00 955.0
8 TraesCS1D01G301400 chr1B 87.912 819 90 4 909 1727 535145993 535145184 0.000000e+00 955.0
9 TraesCS1D01G301400 chr1B 93.143 350 12 7 4295 4639 535383704 535383362 1.970000e-138 503.0
10 TraesCS1D01G301400 chr1B 94.152 171 3 1 3992 4155 535384116 535383946 2.190000e-63 254.0
11 TraesCS1D01G301400 chr1B 94.340 106 6 0 4161 4266 535383800 535383695 3.790000e-36 163.0
12 TraesCS1D01G301400 chr1B 100.000 58 0 0 4674 4731 238682098 238682041 1.800000e-19 108.0
13 TraesCS1D01G301400 chr1A 95.338 2660 80 7 1 2634 496047316 496044675 0.000000e+00 4185.0
14 TraesCS1D01G301400 chr1A 96.878 993 30 1 2840 3832 496044524 496043533 0.000000e+00 1661.0
15 TraesCS1D01G301400 chr1A 86.330 812 96 10 917 1727 495743873 495743076 0.000000e+00 870.0
16 TraesCS1D01G301400 chr1A 92.754 483 24 4 4157 4635 496043108 496042633 0.000000e+00 688.0
17 TraesCS1D01G301400 chr1A 88.564 411 40 2 1925 2331 495740141 495739734 4.250000e-135 492.0
18 TraesCS1D01G301400 chr1A 88.564 411 40 3 1925 2331 495741536 495741129 4.250000e-135 492.0
19 TraesCS1D01G301400 chr1A 88.321 411 41 3 1925 2331 495742905 495742498 1.980000e-133 486.0
20 TraesCS1D01G301400 chr1A 88.304 342 36 4 1394 1734 495740645 495740307 1.590000e-109 407.0
21 TraesCS1D01G301400 chr1A 99.398 166 1 0 3992 4157 496043536 496043371 7.690000e-78 302.0
22 TraesCS1D01G301400 chr1A 89.286 168 18 0 1229 1396 495742019 495742186 1.330000e-50 211.0
23 TraesCS1D01G301400 chr3A 78.113 1261 246 20 1073 2318 589393181 589394426 0.000000e+00 773.0
24 TraesCS1D01G301400 chr3A 84.413 571 83 6 3094 3661 589395006 589395573 1.490000e-154 556.0
25 TraesCS1D01G301400 chr3D 78.226 1240 244 17 1073 2299 447989639 447990865 0.000000e+00 771.0
26 TraesCS1D01G301400 chr3D 83.392 572 87 7 3094 3661 447991603 447992170 1.510000e-144 523.0
27 TraesCS1D01G301400 chr3D 100.000 162 0 0 3831 3992 467281042 467281203 2.770000e-77 300.0
28 TraesCS1D01G301400 chr3D 100.000 58 0 0 4674 4731 516957425 516957482 1.800000e-19 108.0
29 TraesCS1D01G301400 chr3B 78.117 1243 240 22 1073 2299 587566070 587567296 0.000000e+00 760.0
30 TraesCS1D01G301400 chr3B 82.712 590 96 5 3094 3680 587567787 587568373 1.950000e-143 520.0
31 TraesCS1D01G301400 chr3B 100.000 166 0 0 3829 3994 51787775 51787940 1.650000e-79 307.0
32 TraesCS1D01G301400 chr3B 98.795 166 2 0 3831 3996 629551780 629551945 3.580000e-76 296.0
33 TraesCS1D01G301400 chr3B 92.982 171 12 0 3829 3999 595291187 595291017 2.830000e-62 250.0
34 TraesCS1D01G301400 chr3B 96.610 59 1 1 4673 4731 253657945 253657888 3.900000e-16 97.1
35 TraesCS1D01G301400 chr3B 94.828 58 2 1 4674 4731 253624889 253624833 6.520000e-14 89.8
36 TraesCS1D01G301400 chr7D 100.000 167 0 0 3829 3995 622227553 622227719 4.600000e-80 309.0
37 TraesCS1D01G301400 chr7D 94.118 187 7 3 2671 2854 535309683 535309868 1.000000e-71 281.0
38 TraesCS1D01G301400 chr7D 100.000 57 0 0 4675 4731 236500071 236500015 6.470000e-19 106.0
39 TraesCS1D01G301400 chr7D 98.276 58 1 0 4674 4731 616006440 616006383 8.380000e-18 102.0
40 TraesCS1D01G301400 chr5A 100.000 166 0 0 3829 3994 390364875 390364710 1.650000e-79 307.0
41 TraesCS1D01G301400 chr5A 95.455 176 7 1 2676 2851 290391861 290391687 3.610000e-71 279.0
42 TraesCS1D01G301400 chr5A 94.972 179 7 2 2663 2841 429513453 429513629 3.610000e-71 279.0
43 TraesCS1D01G301400 chr5A 76.585 205 36 11 3324 3522 415322180 415322378 8.380000e-18 102.0
44 TraesCS1D01G301400 chr5B 99.398 166 1 0 3831 3996 502500371 502500206 7.690000e-78 302.0
45 TraesCS1D01G301400 chr5B 94.944 178 7 2 2676 2853 486081657 486081482 1.300000e-70 278.0
46 TraesCS1D01G301400 chr5B 76.585 205 36 11 3324 3522 369262369 369262171 8.380000e-18 102.0
47 TraesCS1D01G301400 chr6B 99.383 162 1 0 3831 3992 20716845 20717006 1.290000e-75 294.0
48 TraesCS1D01G301400 chr6B 96.491 171 5 1 2679 2849 240047055 240046886 1.000000e-71 281.0
49 TraesCS1D01G301400 chr6B 91.960 199 11 3 2672 2869 568047234 568047040 1.680000e-69 274.0
50 TraesCS1D01G301400 chr6B 96.610 59 0 2 4674 4731 33076467 33076524 3.900000e-16 97.1
51 TraesCS1D01G301400 chr2D 96.512 172 4 2 2676 2846 560959485 560959655 2.790000e-72 283.0
52 TraesCS1D01G301400 chr2D 98.276 58 1 0 4674 4731 88389186 88389243 8.380000e-18 102.0
53 TraesCS1D01G301400 chr2D 96.552 58 2 0 4674 4731 36051595 36051538 3.900000e-16 97.1
54 TraesCS1D01G301400 chr2B 95.977 174 6 1 2676 2849 28427337 28427165 1.000000e-71 281.0
55 TraesCS1D01G301400 chr7A 91.111 180 14 2 3817 3995 448100985 448101163 4.730000e-60 243.0
56 TraesCS1D01G301400 chr4A 76.682 223 43 7 3364 3583 60926386 60926170 1.080000e-21 115.0
57 TraesCS1D01G301400 chr5D 77.073 205 35 11 3324 3522 319145960 319145762 1.800000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G301400 chr1D 399187270 399192000 4730 True 8737.000000 8737 100.000000 1 4731 1 chr1D.!!$R1 4730
1 TraesCS1D01G301400 chr1D 399063268 399064240 972 True 465.000000 525 89.147000 1394 2331 2 chr1D.!!$R2 937
2 TraesCS1D01G301400 chr1B 535383362 535387886 4524 True 1396.400000 4471 94.904200 1 4639 5 chr1B.!!$R3 4638
3 TraesCS1D01G301400 chr1B 535143262 535145993 2731 True 1005.666667 1107 89.530667 909 3731 3 chr1B.!!$R2 2822
4 TraesCS1D01G301400 chr1A 496042633 496047316 4683 True 1709.000000 4185 96.092000 1 4635 4 chr1A.!!$R2 4634
5 TraesCS1D01G301400 chr1A 495739734 495743873 4139 True 549.400000 870 88.016600 917 2331 5 chr1A.!!$R1 1414
6 TraesCS1D01G301400 chr3A 589393181 589395573 2392 False 664.500000 773 81.263000 1073 3661 2 chr3A.!!$F1 2588
7 TraesCS1D01G301400 chr3D 447989639 447992170 2531 False 647.000000 771 80.809000 1073 3661 2 chr3D.!!$F3 2588
8 TraesCS1D01G301400 chr3B 587566070 587568373 2303 False 640.000000 760 80.414500 1073 3680 2 chr3B.!!$F3 2607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 196 1.473434 GGACCCCTGAACATGTCGATC 60.473 57.143 0.0 0.0 0.00 3.69 F
1230 1257 1.949631 GCGTATGCTGCGACTACCC 60.950 63.158 0.0 0.0 38.39 3.69 F
2586 4182 0.815734 TCGGAATCTCGAACTGGACC 59.184 55.000 0.0 0.0 36.12 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2166 0.389426 TCGTGCCGTAGCTTCCTTTC 60.389 55.0 0.0 0.0 40.80 2.62 R
2719 4545 1.182667 CATCCGTCTGTGGTAGTCCA 58.817 55.0 0.0 0.0 42.05 4.02 R
3911 6447 0.041926 CCGTCGTTTTCGTTTCCACC 60.042 55.0 0.0 0.0 44.46 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 102 6.094186 GCTTTGGATTGGTTAGTCTAAAGGAG 59.906 42.308 11.41 0.00 40.87 3.69
191 196 1.473434 GGACCCCTGAACATGTCGATC 60.473 57.143 0.00 0.00 0.00 3.69
244 249 7.611855 TGGGTTTGTGTTTTTGTTCCAATAATT 59.388 29.630 0.00 0.00 0.00 1.40
353 358 6.684538 AGATACTGTATCTAGGTTCCTTGGT 58.315 40.000 24.89 0.84 43.44 3.67
357 362 5.187967 ACTGTATCTAGGTTCCTTGGTTCTG 59.812 44.000 0.00 0.00 0.00 3.02
615 620 8.596271 TCATCTTGTAAACTGTTAATGAACGA 57.404 30.769 0.00 0.00 38.51 3.85
622 627 7.968956 TGTAAACTGTTAATGAACGAAAAGCAA 59.031 29.630 0.00 0.00 38.51 3.91
759 764 6.421801 AGCAATGATGTTTTGTTAGTTGCTTC 59.578 34.615 3.67 0.00 46.05 3.86
992 1018 3.006967 TGTTCTCCTTGTTCTCTAGCCAC 59.993 47.826 0.00 0.00 0.00 5.01
1064 1090 1.985895 CCTTCCTTACCCTCCTTGTGT 59.014 52.381 0.00 0.00 0.00 3.72
1067 1093 2.257207 TCCTTACCCTCCTTGTGTCAG 58.743 52.381 0.00 0.00 0.00 3.51
1230 1257 1.949631 GCGTATGCTGCGACTACCC 60.950 63.158 0.00 0.00 38.39 3.69
1657 1684 4.605640 TCTTTCTTGGGGAATGCTTTTG 57.394 40.909 0.00 0.00 33.53 2.44
2049 2166 1.818642 CTTCAGCTGAAGTCCTTGGG 58.181 55.000 37.56 18.33 44.80 4.12
2379 3869 7.659390 TGAATTTTGAAACTTGTTTTGACCTGT 59.341 29.630 0.06 0.00 0.00 4.00
2426 3967 7.992608 TGACAAGTACATGCAATTCTATGGTAT 59.007 33.333 0.00 0.00 0.00 2.73
2503 4044 4.056092 TGCAGTTTGTTCAATGCAATCA 57.944 36.364 10.18 0.00 45.09 2.57
2510 4051 8.057742 CAGTTTGTTCAATGCAATCAAAGTAAC 58.942 33.333 0.00 0.00 32.68 2.50
2586 4182 0.815734 TCGGAATCTCGAACTGGACC 59.184 55.000 0.00 0.00 36.12 4.46
2637 4354 5.313712 TCCCAGTTGGTTATTCTGAAACTC 58.686 41.667 0.00 0.00 34.77 3.01
2641 4358 5.182001 CAGTTGGTTATTCTGAAACTCCCAG 59.818 44.000 0.00 0.00 0.00 4.45
2648 4365 4.781775 TTCTGAAACTCCCAGTTGGTTA 57.218 40.909 0.00 0.00 38.66 2.85
2653 4370 5.070001 TGAAACTCCCAGTTGGTTATTCTG 58.930 41.667 0.00 0.00 38.66 3.02
2654 4371 4.993705 AACTCCCAGTTGGTTATTCTGA 57.006 40.909 0.00 0.00 37.00 3.27
2655 4372 4.993705 ACTCCCAGTTGGTTATTCTGAA 57.006 40.909 0.00 0.00 34.77 3.02
2659 4376 8.331931 ACTCCCAGTTGGTTATTCTGAATATA 57.668 34.615 10.68 0.67 34.77 0.86
2660 4377 8.949421 ACTCCCAGTTGGTTATTCTGAATATAT 58.051 33.333 10.68 0.00 34.77 0.86
2662 4379 8.944138 TCCCAGTTGGTTATTCTGAATATATGA 58.056 33.333 10.68 0.00 34.77 2.15
2684 4510 6.708285 TGAAACTCACTAATTTACTCCCTCC 58.292 40.000 0.00 0.00 0.00 4.30
2685 4511 5.340439 AACTCACTAATTTACTCCCTCCG 57.660 43.478 0.00 0.00 0.00 4.63
2686 4512 4.351127 ACTCACTAATTTACTCCCTCCGT 58.649 43.478 0.00 0.00 0.00 4.69
2687 4513 4.776308 ACTCACTAATTTACTCCCTCCGTT 59.224 41.667 0.00 0.00 0.00 4.44
2688 4514 5.105432 ACTCACTAATTTACTCCCTCCGTTC 60.105 44.000 0.00 0.00 0.00 3.95
2689 4515 4.161001 TCACTAATTTACTCCCTCCGTTCC 59.839 45.833 0.00 0.00 0.00 3.62
2690 4516 4.161754 CACTAATTTACTCCCTCCGTTCCT 59.838 45.833 0.00 0.00 0.00 3.36
2691 4517 5.361857 CACTAATTTACTCCCTCCGTTCCTA 59.638 44.000 0.00 0.00 0.00 2.94
2692 4518 5.960202 ACTAATTTACTCCCTCCGTTCCTAA 59.040 40.000 0.00 0.00 0.00 2.69
2693 4519 5.767277 AATTTACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
2694 4520 5.970501 ATTTACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
2695 4521 7.441903 AATTTACTCCCTCCGTTCCTAAATA 57.558 36.000 0.00 0.00 0.00 1.40
2696 4522 7.628501 ATTTACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
2697 4523 7.441903 TTTACTCCCTCCGTTCCTAAATATT 57.558 36.000 0.00 0.00 0.00 1.28
2698 4524 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2699 4525 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2700 4526 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2701 4527 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2702 4528 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2703 4529 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2704 4530 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2705 4531 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2706 4532 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2707 4533 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2708 4534 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2709 4535 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2722 4548 9.573166 TTTGTCTTTCTAGAGATTTCAAATGGA 57.427 29.630 0.00 0.00 0.00 3.41
2723 4549 8.553459 TGTCTTTCTAGAGATTTCAAATGGAC 57.447 34.615 0.00 0.00 0.00 4.02
2724 4550 8.378565 TGTCTTTCTAGAGATTTCAAATGGACT 58.621 33.333 0.00 0.00 0.00 3.85
2725 4551 9.877178 GTCTTTCTAGAGATTTCAAATGGACTA 57.123 33.333 0.00 0.00 0.00 2.59
2726 4552 9.877178 TCTTTCTAGAGATTTCAAATGGACTAC 57.123 33.333 0.00 0.00 0.00 2.73
2727 4553 9.103861 CTTTCTAGAGATTTCAAATGGACTACC 57.896 37.037 0.00 0.00 0.00 3.18
2737 4563 3.683885 TGGACTACCACAGACGGAT 57.316 52.632 0.00 0.00 41.77 4.18
2738 4564 1.182667 TGGACTACCACAGACGGATG 58.817 55.000 0.00 0.00 41.77 3.51
2739 4565 1.183549 GGACTACCACAGACGGATGT 58.816 55.000 0.00 0.00 35.97 3.06
2740 4566 2.291089 TGGACTACCACAGACGGATGTA 60.291 50.000 0.00 0.00 41.77 2.29
2741 4567 2.756760 GGACTACCACAGACGGATGTAA 59.243 50.000 0.00 0.00 35.97 2.41
2742 4568 3.383825 GGACTACCACAGACGGATGTAAT 59.616 47.826 0.00 0.00 35.97 1.89
2743 4569 4.581824 GGACTACCACAGACGGATGTAATA 59.418 45.833 0.00 0.00 35.97 0.98
2744 4570 5.243283 GGACTACCACAGACGGATGTAATAT 59.757 44.000 0.00 0.00 35.97 1.28
2745 4571 6.432162 GGACTACCACAGACGGATGTAATATA 59.568 42.308 0.00 0.00 35.97 0.86
2746 4572 7.361885 GGACTACCACAGACGGATGTAATATAG 60.362 44.444 0.00 0.00 35.97 1.31
2747 4573 7.229308 ACTACCACAGACGGATGTAATATAGA 58.771 38.462 0.00 0.00 0.00 1.98
2748 4574 6.328641 ACCACAGACGGATGTAATATAGAC 57.671 41.667 0.00 0.00 0.00 2.59
2750 4576 6.493802 ACCACAGACGGATGTAATATAGACAT 59.506 38.462 3.42 3.42 40.25 3.06
2781 4607 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2783 4609 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
2785 4611 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
2786 4612 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
2787 4613 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
2788 4614 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
2789 4615 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
2790 4616 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
2791 4617 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
2792 4618 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
2793 4619 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
2794 4620 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
2795 4621 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
2796 4622 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
2797 4623 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
2798 4624 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
2800 4626 5.230182 TGCTCTGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 0.00 3.33
2801 4627 5.010617 TGCTCTGTATGTAGTCACTTGTTGA 59.989 40.000 0.00 0.00 0.00 3.18
2802 4628 5.926542 GCTCTGTATGTAGTCACTTGTTGAA 59.073 40.000 0.00 0.00 35.39 2.69
2803 4629 6.423905 GCTCTGTATGTAGTCACTTGTTGAAA 59.576 38.462 0.00 0.00 35.39 2.69
2804 4630 7.118390 GCTCTGTATGTAGTCACTTGTTGAAAT 59.882 37.037 0.00 0.00 35.39 2.17
2805 4631 9.639601 CTCTGTATGTAGTCACTTGTTGAAATA 57.360 33.333 0.00 0.00 35.39 1.40
2817 4643 9.996554 TCACTTGTTGAAATATCTAGAAAGACA 57.003 29.630 0.00 0.00 33.57 3.41
2832 4658 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2833 4659 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2834 4660 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2835 4661 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2836 4662 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2837 4663 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2838 4664 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2987 4815 8.178313 GCTGAAATGTGTAGAAAAGAATAGGTC 58.822 37.037 0.00 0.00 0.00 3.85
2989 4817 8.383175 TGAAATGTGTAGAAAAGAATAGGTCCT 58.617 33.333 0.00 0.00 0.00 3.85
3013 4841 9.319143 CCTGATTTTCTTCACCTGTATAGTTAG 57.681 37.037 0.00 0.00 0.00 2.34
3071 4899 4.193826 ACGAAGTTACATGAGCACAGAT 57.806 40.909 0.00 0.00 37.78 2.90
3220 5052 2.746904 CAAGTTCATCCACGGCAACATA 59.253 45.455 0.00 0.00 0.00 2.29
3763 6299 6.072397 ACAATAGGTCTGATACTGATAGCGTC 60.072 42.308 0.00 0.00 0.00 5.19
3789 6325 2.878406 TCTGCCTGCAAACTAAGTTGAC 59.122 45.455 0.00 0.00 0.00 3.18
3794 6330 0.110373 GCAAACTAAGTTGACGGCCG 60.110 55.000 26.86 26.86 0.00 6.13
3829 6365 8.978472 ACTGATACCATTCTTTTACTAGCAGTA 58.022 33.333 0.00 0.00 31.02 2.74
3831 6367 9.817809 TGATACCATTCTTTTACTAGCAGTAAG 57.182 33.333 8.21 2.39 41.23 2.34
3833 6369 5.880887 ACCATTCTTTTACTAGCAGTAAGGC 59.119 40.000 8.21 0.00 41.23 4.35
3835 6371 4.119442 TCTTTTACTAGCAGTAAGGCCG 57.881 45.455 0.00 0.00 41.23 6.13
3836 6372 2.304751 TTTACTAGCAGTAAGGCCGC 57.695 50.000 0.00 0.00 41.23 6.53
3837 6373 0.101759 TTACTAGCAGTAAGGCCGCG 59.898 55.000 0.00 0.00 35.89 6.46
3838 6374 2.345880 TACTAGCAGTAAGGCCGCGC 62.346 60.000 0.00 0.00 0.00 6.86
3839 6375 3.432051 CTAGCAGTAAGGCCGCGCT 62.432 63.158 5.56 11.25 36.72 5.92
3840 6376 2.907897 CTAGCAGTAAGGCCGCGCTT 62.908 60.000 5.56 1.72 34.18 4.68
3841 6377 4.166011 GCAGTAAGGCCGCGCTTG 62.166 66.667 5.56 0.00 0.00 4.01
3842 6378 3.499737 CAGTAAGGCCGCGCTTGG 61.500 66.667 5.56 0.18 0.00 3.61
3844 6380 2.744709 GTAAGGCCGCGCTTGGAA 60.745 61.111 5.56 0.00 0.00 3.53
3845 6381 2.112815 GTAAGGCCGCGCTTGGAAT 61.113 57.895 5.56 0.00 0.00 3.01
3846 6382 1.817941 TAAGGCCGCGCTTGGAATC 60.818 57.895 5.56 0.00 0.00 2.52
3850 6386 3.864686 CCGCGCTTGGAATCGGTG 61.865 66.667 5.56 0.00 37.33 4.94
3851 6387 3.118454 CGCGCTTGGAATCGGTGT 61.118 61.111 5.56 0.00 0.00 4.16
3852 6388 1.807981 CGCGCTTGGAATCGGTGTA 60.808 57.895 5.56 0.00 0.00 2.90
3853 6389 1.355796 CGCGCTTGGAATCGGTGTAA 61.356 55.000 5.56 0.00 0.00 2.41
3854 6390 0.800012 GCGCTTGGAATCGGTGTAAA 59.200 50.000 0.00 0.00 0.00 2.01
3856 6392 2.610374 GCGCTTGGAATCGGTGTAAATA 59.390 45.455 0.00 0.00 0.00 1.40
3857 6393 3.064271 GCGCTTGGAATCGGTGTAAATAA 59.936 43.478 0.00 0.00 0.00 1.40
3858 6394 4.437659 GCGCTTGGAATCGGTGTAAATAAA 60.438 41.667 0.00 0.00 0.00 1.40
3859 6395 5.732247 GCGCTTGGAATCGGTGTAAATAAAT 60.732 40.000 0.00 0.00 0.00 1.40
3860 6396 6.512091 GCGCTTGGAATCGGTGTAAATAAATA 60.512 38.462 0.00 0.00 0.00 1.40
3862 6398 7.466185 CGCTTGGAATCGGTGTAAATAAATACA 60.466 37.037 0.00 0.00 33.52 2.29
3863 6399 7.855904 GCTTGGAATCGGTGTAAATAAATACAG 59.144 37.037 0.00 0.00 36.51 2.74
3864 6400 7.795482 TGGAATCGGTGTAAATAAATACAGG 57.205 36.000 0.00 0.00 36.51 4.00
3865 6401 7.340256 TGGAATCGGTGTAAATAAATACAGGT 58.660 34.615 0.00 0.00 36.51 4.00
3866 6402 7.281324 TGGAATCGGTGTAAATAAATACAGGTG 59.719 37.037 0.00 0.00 36.51 4.00
3867 6403 7.281549 GGAATCGGTGTAAATAAATACAGGTGT 59.718 37.037 0.00 0.00 36.51 4.16
3868 6404 9.316730 GAATCGGTGTAAATAAATACAGGTGTA 57.683 33.333 0.00 0.00 36.51 2.90
3869 6405 9.841295 AATCGGTGTAAATAAATACAGGTGTAT 57.159 29.630 0.00 0.00 42.60 2.29
3884 6420 6.285990 ACAGGTGTATTTTTCTTACGAGTGT 58.714 36.000 0.00 0.00 0.00 3.55
3885 6421 7.436118 ACAGGTGTATTTTTCTTACGAGTGTA 58.564 34.615 0.00 0.00 0.00 2.90
3886 6422 8.092687 ACAGGTGTATTTTTCTTACGAGTGTAT 58.907 33.333 0.00 0.00 0.00 2.29
3888 6424 8.529476 AGGTGTATTTTTCTTACGAGTGTATCT 58.471 33.333 0.00 0.00 0.00 1.98
3889 6425 9.148104 GGTGTATTTTTCTTACGAGTGTATCTT 57.852 33.333 0.00 0.00 0.00 2.40
3893 6429 7.801547 TTTTTCTTACGAGTGTATCTTACCG 57.198 36.000 0.00 0.00 0.00 4.02
3895 6431 3.313526 TCTTACGAGTGTATCTTACCGGC 59.686 47.826 0.00 0.00 0.00 6.13
3896 6432 0.743097 ACGAGTGTATCTTACCGGCC 59.257 55.000 0.00 0.00 0.00 6.13
3897 6433 0.742505 CGAGTGTATCTTACCGGCCA 59.257 55.000 0.00 0.00 0.00 5.36
3900 6436 2.954318 GAGTGTATCTTACCGGCCAGTA 59.046 50.000 0.00 0.00 0.00 2.74
3901 6437 2.957006 AGTGTATCTTACCGGCCAGTAG 59.043 50.000 0.00 0.00 0.00 2.57
3902 6438 2.692041 GTGTATCTTACCGGCCAGTAGT 59.308 50.000 0.00 0.00 0.00 2.73
3905 6441 2.154567 TCTTACCGGCCAGTAGTGAT 57.845 50.000 0.00 0.00 0.00 3.06
3906 6442 2.463752 TCTTACCGGCCAGTAGTGATT 58.536 47.619 0.00 0.00 0.00 2.57
3907 6443 2.835764 TCTTACCGGCCAGTAGTGATTT 59.164 45.455 0.00 0.00 0.00 2.17
3908 6444 2.684001 TACCGGCCAGTAGTGATTTG 57.316 50.000 0.00 0.00 0.00 2.32
3909 6445 0.676782 ACCGGCCAGTAGTGATTTGC 60.677 55.000 0.00 0.00 0.00 3.68
3911 6447 0.729116 CGGCCAGTAGTGATTTGCAG 59.271 55.000 2.24 0.00 0.00 4.41
3913 6449 1.614317 GGCCAGTAGTGATTTGCAGGT 60.614 52.381 0.00 0.00 0.00 4.00
3914 6450 1.470098 GCCAGTAGTGATTTGCAGGTG 59.530 52.381 0.00 0.00 0.00 4.00
3916 6452 2.290260 CCAGTAGTGATTTGCAGGTGGA 60.290 50.000 0.00 0.00 0.00 4.02
3917 6453 3.411446 CAGTAGTGATTTGCAGGTGGAA 58.589 45.455 0.00 0.00 0.00 3.53
3918 6454 3.820467 CAGTAGTGATTTGCAGGTGGAAA 59.180 43.478 0.00 0.00 39.60 3.13
3919 6455 3.821033 AGTAGTGATTTGCAGGTGGAAAC 59.179 43.478 0.00 0.00 38.15 2.78
3920 6456 1.608590 AGTGATTTGCAGGTGGAAACG 59.391 47.619 0.00 0.00 38.15 3.60
3921 6457 1.606668 GTGATTTGCAGGTGGAAACGA 59.393 47.619 0.00 0.00 38.15 3.85
3922 6458 2.034053 GTGATTTGCAGGTGGAAACGAA 59.966 45.455 0.00 0.00 38.15 3.85
3923 6459 2.690497 TGATTTGCAGGTGGAAACGAAA 59.310 40.909 0.00 0.00 38.15 3.46
3925 6461 2.570442 TTGCAGGTGGAAACGAAAAC 57.430 45.000 0.00 0.00 0.00 2.43
3928 6464 1.596220 GCAGGTGGAAACGAAAACGAC 60.596 52.381 0.00 0.00 0.00 4.34
3929 6465 0.932399 AGGTGGAAACGAAAACGACG 59.068 50.000 0.00 0.00 0.00 5.12
3931 6467 0.655337 GTGGAAACGAAAACGACGGC 60.655 55.000 0.00 0.00 34.93 5.68
3932 6468 1.082561 GGAAACGAAAACGACGGCC 60.083 57.895 0.00 0.00 34.93 6.13
3933 6469 1.437573 GAAACGAAAACGACGGCCG 60.438 57.895 26.86 26.86 45.44 6.13
3936 6472 4.067016 CGAAAACGACGGCCGGTG 62.067 66.667 31.76 23.31 43.93 4.94
3937 6473 3.719144 GAAAACGACGGCCGGTGG 61.719 66.667 31.76 19.97 43.93 4.61
3947 6483 2.033602 GCCGGTGGCCTGTAACTT 59.966 61.111 3.32 0.00 44.06 2.66
3948 6484 1.602605 GCCGGTGGCCTGTAACTTT 60.603 57.895 3.32 0.00 44.06 2.66
3949 6485 1.176619 GCCGGTGGCCTGTAACTTTT 61.177 55.000 3.32 0.00 44.06 2.27
3950 6486 1.883209 GCCGGTGGCCTGTAACTTTTA 60.883 52.381 3.32 0.00 44.06 1.52
3951 6487 1.808343 CCGGTGGCCTGTAACTTTTAC 59.192 52.381 3.32 0.00 0.00 2.01
3952 6488 2.496111 CGGTGGCCTGTAACTTTTACA 58.504 47.619 3.32 0.00 0.00 2.41
3955 6491 3.887110 GGTGGCCTGTAACTTTTACAAGT 59.113 43.478 3.32 0.00 45.89 3.16
3956 6492 4.261447 GGTGGCCTGTAACTTTTACAAGTG 60.261 45.833 3.32 0.00 42.89 3.16
3957 6493 4.337274 GTGGCCTGTAACTTTTACAAGTGT 59.663 41.667 3.32 0.00 42.89 3.55
3961 6497 7.040961 TGGCCTGTAACTTTTACAAGTGTATTC 60.041 37.037 3.32 0.00 42.89 1.75
3963 6499 8.347035 GCCTGTAACTTTTACAAGTGTATTCAA 58.653 33.333 0.00 0.00 42.89 2.69
3975 6511 7.848491 ACAAGTGTATTCAAAGTAGAAACGAC 58.152 34.615 0.00 0.00 0.00 4.34
3976 6512 7.493320 ACAAGTGTATTCAAAGTAGAAACGACA 59.507 33.333 0.00 0.00 0.00 4.35
3977 6513 8.495949 CAAGTGTATTCAAAGTAGAAACGACAT 58.504 33.333 0.00 0.00 0.00 3.06
3978 6514 8.603242 AGTGTATTCAAAGTAGAAACGACATT 57.397 30.769 0.00 0.00 0.00 2.71
3980 6516 7.955864 GTGTATTCAAAGTAGAAACGACATTCC 59.044 37.037 0.00 0.00 0.00 3.01
3981 6517 7.658167 TGTATTCAAAGTAGAAACGACATTCCA 59.342 33.333 0.00 0.00 0.00 3.53
3982 6518 6.928979 TTCAAAGTAGAAACGACATTCCAA 57.071 33.333 0.00 0.00 0.00 3.53
3983 6519 6.928979 TCAAAGTAGAAACGACATTCCAAA 57.071 33.333 0.00 0.00 0.00 3.28
3985 6521 6.316640 TCAAAGTAGAAACGACATTCCAAACA 59.683 34.615 0.00 0.00 0.00 2.83
3986 6522 5.924475 AGTAGAAACGACATTCCAAACAG 57.076 39.130 0.00 0.00 0.00 3.16
3987 6523 5.607477 AGTAGAAACGACATTCCAAACAGA 58.393 37.500 0.00 0.00 0.00 3.41
3989 6525 3.251004 AGAAACGACATTCCAAACAGAGC 59.749 43.478 0.00 0.00 0.00 4.09
3990 6526 1.523758 ACGACATTCCAAACAGAGCC 58.476 50.000 0.00 0.00 0.00 4.70
4157 6700 1.227943 TGGTCTGTCACTTGCCTGC 60.228 57.895 0.00 0.00 0.00 4.85
4158 6701 1.227943 GGTCTGTCACTTGCCTGCA 60.228 57.895 0.00 0.00 0.00 4.41
4161 6704 0.181114 TCTGTCACTTGCCTGCAACT 59.819 50.000 0.00 0.00 0.00 3.16
4278 7157 8.667987 TTGTTTAGCGATTTTGTCATCATAAC 57.332 30.769 0.00 0.00 0.00 1.89
4516 7401 1.533273 ACGGGTGCAGTCTGTAGGT 60.533 57.895 0.93 0.00 0.00 3.08
4560 7445 6.564328 GCCTTAGGATTTCAATCAAAATCGT 58.436 36.000 0.69 8.89 43.52 3.73
4571 7456 5.822519 TCAATCAAAATCGTTATCAGGAGGG 59.177 40.000 0.00 0.00 0.00 4.30
4580 7465 1.645402 TATCAGGAGGGGCAAAGGGC 61.645 60.000 0.00 0.00 43.74 5.19
4646 7531 7.550712 AGGGAATTTGTTTAATCATTGAGAGC 58.449 34.615 0.00 0.00 0.00 4.09
4647 7532 6.758416 GGGAATTTGTTTAATCATTGAGAGCC 59.242 38.462 0.00 0.00 0.00 4.70
4648 7533 7.364144 GGGAATTTGTTTAATCATTGAGAGCCT 60.364 37.037 0.00 0.00 0.00 4.58
4649 7534 8.686334 GGAATTTGTTTAATCATTGAGAGCCTA 58.314 33.333 0.00 0.00 0.00 3.93
4659 7544 7.664082 ATCATTGAGAGCCTAATTAATCACG 57.336 36.000 0.00 0.00 0.00 4.35
4660 7545 5.991606 TCATTGAGAGCCTAATTAATCACGG 59.008 40.000 0.00 0.00 0.00 4.94
4661 7546 4.336889 TGAGAGCCTAATTAATCACGGG 57.663 45.455 0.00 0.00 0.00 5.28
4662 7547 3.964688 TGAGAGCCTAATTAATCACGGGA 59.035 43.478 0.00 0.00 0.00 5.14
4663 7548 4.039245 TGAGAGCCTAATTAATCACGGGAG 59.961 45.833 0.00 0.00 0.00 4.30
4664 7549 4.223953 AGAGCCTAATTAATCACGGGAGA 58.776 43.478 0.00 0.00 0.00 3.71
4665 7550 4.039366 AGAGCCTAATTAATCACGGGAGAC 59.961 45.833 0.00 0.00 0.00 3.36
4695 7580 3.636282 TTTTTAGGCAAACTCCGAAGC 57.364 42.857 0.00 0.00 0.00 3.86
4696 7581 2.561478 TTTAGGCAAACTCCGAAGCT 57.439 45.000 0.00 0.00 0.00 3.74
4697 7582 2.561478 TTAGGCAAACTCCGAAGCTT 57.439 45.000 0.00 0.00 0.00 3.74
4698 7583 2.561478 TAGGCAAACTCCGAAGCTTT 57.439 45.000 0.00 0.00 0.00 3.51
4699 7584 1.692411 AGGCAAACTCCGAAGCTTTT 58.308 45.000 0.00 0.00 0.00 2.27
4700 7585 2.858745 AGGCAAACTCCGAAGCTTTTA 58.141 42.857 0.00 0.00 0.00 1.52
4701 7586 3.421844 AGGCAAACTCCGAAGCTTTTAT 58.578 40.909 0.00 0.00 0.00 1.40
4702 7587 3.826729 AGGCAAACTCCGAAGCTTTTATT 59.173 39.130 0.00 0.00 0.00 1.40
4703 7588 5.007682 AGGCAAACTCCGAAGCTTTTATTA 58.992 37.500 0.00 0.00 0.00 0.98
4704 7589 5.093457 GGCAAACTCCGAAGCTTTTATTAC 58.907 41.667 0.00 0.00 0.00 1.89
4705 7590 4.786575 GCAAACTCCGAAGCTTTTATTACG 59.213 41.667 0.00 0.00 0.00 3.18
4706 7591 5.390145 GCAAACTCCGAAGCTTTTATTACGA 60.390 40.000 0.00 0.00 0.00 3.43
4707 7592 5.774878 AACTCCGAAGCTTTTATTACGAC 57.225 39.130 0.00 0.00 0.00 4.34
4708 7593 3.855950 ACTCCGAAGCTTTTATTACGACG 59.144 43.478 0.00 0.00 0.00 5.12
4709 7594 3.836949 TCCGAAGCTTTTATTACGACGT 58.163 40.909 5.52 5.52 0.00 4.34
4710 7595 3.853671 TCCGAAGCTTTTATTACGACGTC 59.146 43.478 2.43 5.18 0.00 4.34
4711 7596 3.609373 CCGAAGCTTTTATTACGACGTCA 59.391 43.478 17.16 0.00 0.00 4.35
4712 7597 4.489841 CCGAAGCTTTTATTACGACGTCAC 60.490 45.833 17.16 0.00 0.00 3.67
4713 7598 4.088923 CGAAGCTTTTATTACGACGTCACA 59.911 41.667 17.16 0.00 0.00 3.58
4714 7599 5.387649 CGAAGCTTTTATTACGACGTCACAA 60.388 40.000 17.16 8.81 0.00 3.33
4715 7600 6.476243 AAGCTTTTATTACGACGTCACAAT 57.524 33.333 17.16 15.32 0.00 2.71
4716 7601 5.854157 AGCTTTTATTACGACGTCACAATG 58.146 37.500 17.16 0.66 0.00 2.82
4717 7602 5.407387 AGCTTTTATTACGACGTCACAATGT 59.593 36.000 17.16 7.32 0.00 2.71
4718 7603 6.073440 AGCTTTTATTACGACGTCACAATGTT 60.073 34.615 17.16 0.00 0.00 2.71
4719 7604 6.575942 GCTTTTATTACGACGTCACAATGTTT 59.424 34.615 17.16 0.00 0.00 2.83
4720 7605 7.741216 GCTTTTATTACGACGTCACAATGTTTA 59.259 33.333 17.16 0.00 0.00 2.01
4721 7606 8.916657 TTTTATTACGACGTCACAATGTTTAC 57.083 30.769 17.16 0.00 0.00 2.01
4722 7607 7.634809 TTATTACGACGTCACAATGTTTACA 57.365 32.000 17.16 0.00 0.00 2.41
4723 7608 6.715344 ATTACGACGTCACAATGTTTACAT 57.285 33.333 17.16 0.00 38.41 2.29
4724 7609 4.383774 ACGACGTCACAATGTTTACATG 57.616 40.909 17.16 0.00 36.56 3.21
4725 7610 3.185594 ACGACGTCACAATGTTTACATGG 59.814 43.478 17.16 0.00 36.56 3.66
4726 7611 3.430556 CGACGTCACAATGTTTACATGGA 59.569 43.478 17.16 0.00 36.56 3.41
4727 7612 4.665645 CGACGTCACAATGTTTACATGGAC 60.666 45.833 17.16 7.95 36.56 4.02
4728 7613 3.731855 CGTCACAATGTTTACATGGACG 58.268 45.455 20.29 20.29 43.10 4.79
4729 7614 3.430556 CGTCACAATGTTTACATGGACGA 59.569 43.478 24.82 11.75 46.77 4.20
4730 7615 4.084276 CGTCACAATGTTTACATGGACGAA 60.084 41.667 24.82 2.36 46.77 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 196 1.808411 ATGACAAAGTGCTACCACCG 58.192 50.000 0.00 0.00 43.09 4.94
325 330 6.469410 AGGAACCTAGATACAGTATCTCTCG 58.531 44.000 23.96 15.29 44.09 4.04
353 358 6.939730 TCAATAGTGCCAACATTACTTCAGAA 59.060 34.615 0.00 0.00 0.00 3.02
357 362 6.908825 TGTTCAATAGTGCCAACATTACTTC 58.091 36.000 0.00 0.00 0.00 3.01
498 503 6.254157 CCAAAGAATAGCAAATTTGATGACCG 59.746 38.462 22.31 2.77 35.19 4.79
558 563 0.890683 GTTTGCAATCCTGGGTCTGG 59.109 55.000 0.00 0.00 0.00 3.86
611 616 5.221422 TGGATGGAAGAAATTGCTTTTCGTT 60.221 36.000 0.00 3.53 46.89 3.85
613 618 4.808558 TGGATGGAAGAAATTGCTTTTCG 58.191 39.130 0.00 0.00 46.89 3.46
615 620 5.993441 CAGTTGGATGGAAGAAATTGCTTTT 59.007 36.000 0.00 0.00 0.00 2.27
622 627 3.499338 TGTGCAGTTGGATGGAAGAAAT 58.501 40.909 0.00 0.00 0.00 2.17
759 764 9.212641 CCCAATGTAGATAGTTACTTCATGATG 57.787 37.037 7.04 7.04 0.00 3.07
1067 1093 1.138661 CAGAGTTCAGATCAGCCCCTC 59.861 57.143 0.00 0.00 0.00 4.30
2049 2166 0.389426 TCGTGCCGTAGCTTCCTTTC 60.389 55.000 0.00 0.00 40.80 2.62
2503 4044 5.720371 TGCATAATTGGCACAGTTACTTT 57.280 34.783 2.84 0.00 43.04 2.66
2510 4051 3.713288 CCAGAATGCATAATTGGCACAG 58.287 45.455 0.00 1.02 45.23 3.66
2535 4076 1.313812 AAGGCGACCTCAGTCCTACG 61.314 60.000 0.00 0.00 40.12 3.51
2617 4299 5.070001 TGGGAGTTTCAGAATAACCAACTG 58.930 41.667 0.00 0.00 0.00 3.16
2637 4354 9.573166 TTCATATATTCAGAATAACCAACTGGG 57.427 33.333 6.96 0.00 44.81 4.45
2659 4376 7.339482 GGAGGGAGTAAATTAGTGAGTTTCAT 58.661 38.462 0.00 0.00 0.00 2.57
2660 4377 6.573680 CGGAGGGAGTAAATTAGTGAGTTTCA 60.574 42.308 0.00 0.00 0.00 2.69
2662 4379 5.247792 ACGGAGGGAGTAAATTAGTGAGTTT 59.752 40.000 0.00 0.00 0.00 2.66
2675 4501 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2676 4502 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2677 4503 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2678 4504 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2679 4505 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2680 4506 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2681 4507 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2682 4508 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2683 4509 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2696 4522 9.573166 TCCATTTGAAATCTCTAGAAAGACAAA 57.427 29.630 0.00 4.41 0.00 2.83
2697 4523 9.003658 GTCCATTTGAAATCTCTAGAAAGACAA 57.996 33.333 0.00 0.00 0.00 3.18
2698 4524 8.378565 AGTCCATTTGAAATCTCTAGAAAGACA 58.621 33.333 0.00 0.00 0.00 3.41
2699 4525 8.785329 AGTCCATTTGAAATCTCTAGAAAGAC 57.215 34.615 0.00 0.00 0.00 3.01
2700 4526 9.877178 GTAGTCCATTTGAAATCTCTAGAAAGA 57.123 33.333 0.00 0.00 0.00 2.52
2701 4527 9.103861 GGTAGTCCATTTGAAATCTCTAGAAAG 57.896 37.037 0.00 0.00 0.00 2.62
2702 4528 8.602424 TGGTAGTCCATTTGAAATCTCTAGAAA 58.398 33.333 0.00 0.00 39.03 2.52
2703 4529 8.041323 GTGGTAGTCCATTTGAAATCTCTAGAA 58.959 37.037 0.00 0.00 46.20 2.10
2704 4530 7.180229 TGTGGTAGTCCATTTGAAATCTCTAGA 59.820 37.037 0.00 0.00 46.20 2.43
2705 4531 7.331026 TGTGGTAGTCCATTTGAAATCTCTAG 58.669 38.462 0.00 0.00 46.20 2.43
2706 4532 7.180229 TCTGTGGTAGTCCATTTGAAATCTCTA 59.820 37.037 0.00 0.00 46.20 2.43
2707 4533 6.013379 TCTGTGGTAGTCCATTTGAAATCTCT 60.013 38.462 0.00 0.00 46.20 3.10
2708 4534 6.092807 GTCTGTGGTAGTCCATTTGAAATCTC 59.907 42.308 0.00 0.00 46.20 2.75
2709 4535 5.940470 GTCTGTGGTAGTCCATTTGAAATCT 59.060 40.000 0.00 0.00 46.20 2.40
2710 4536 5.163854 CGTCTGTGGTAGTCCATTTGAAATC 60.164 44.000 0.00 0.00 46.20 2.17
2711 4537 4.695455 CGTCTGTGGTAGTCCATTTGAAAT 59.305 41.667 0.00 0.00 46.20 2.17
2712 4538 4.062293 CGTCTGTGGTAGTCCATTTGAAA 58.938 43.478 0.00 0.00 46.20 2.69
2713 4539 3.556213 CCGTCTGTGGTAGTCCATTTGAA 60.556 47.826 0.00 0.00 46.20 2.69
2714 4540 2.028476 CCGTCTGTGGTAGTCCATTTGA 60.028 50.000 0.00 0.00 46.20 2.69
2715 4541 2.028476 TCCGTCTGTGGTAGTCCATTTG 60.028 50.000 0.00 0.00 46.20 2.32
2716 4542 2.253610 TCCGTCTGTGGTAGTCCATTT 58.746 47.619 0.00 0.00 46.20 2.32
2717 4543 1.933021 TCCGTCTGTGGTAGTCCATT 58.067 50.000 0.00 0.00 46.20 3.16
2718 4544 1.757118 CATCCGTCTGTGGTAGTCCAT 59.243 52.381 0.00 0.00 46.20 3.41
2719 4545 1.182667 CATCCGTCTGTGGTAGTCCA 58.817 55.000 0.00 0.00 42.05 4.02
2720 4546 1.183549 ACATCCGTCTGTGGTAGTCC 58.816 55.000 0.00 0.00 0.00 3.85
2721 4547 4.650754 ATTACATCCGTCTGTGGTAGTC 57.349 45.455 0.00 0.00 0.00 2.59
2722 4548 7.174599 GTCTATATTACATCCGTCTGTGGTAGT 59.825 40.741 0.00 0.00 0.00 2.73
2723 4549 7.174426 TGTCTATATTACATCCGTCTGTGGTAG 59.826 40.741 0.00 0.00 0.00 3.18
2724 4550 6.999871 TGTCTATATTACATCCGTCTGTGGTA 59.000 38.462 0.00 0.00 0.00 3.25
2725 4551 5.831525 TGTCTATATTACATCCGTCTGTGGT 59.168 40.000 0.00 0.00 0.00 4.16
2726 4552 6.327279 TGTCTATATTACATCCGTCTGTGG 57.673 41.667 0.00 0.00 0.00 4.17
2761 4587 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
2764 4590 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
2765 4591 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
2771 4597 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
2774 4600 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
2775 4601 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
2776 4602 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
2778 4604 5.470368 TCAACAAGTGACTACATACAGAGC 58.530 41.667 0.00 0.00 0.00 4.09
2779 4605 7.946655 TTTCAACAAGTGACTACATACAGAG 57.053 36.000 0.00 0.00 35.39 3.35
2791 4617 9.996554 TGTCTTTCTAGATATTTCAACAAGTGA 57.003 29.630 0.00 0.00 31.86 3.41
2807 4633 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2808 4634 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2809 4635 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2810 4636 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2811 4637 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2812 4638 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2813 4639 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2814 4640 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2815 4641 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2816 4642 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2817 4643 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2818 4644 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2819 4645 7.072076 ACAAATACTCCCTCCGTTCCTAAATAT 59.928 37.037 0.00 0.00 0.00 1.28
2820 4646 6.384886 ACAAATACTCCCTCCGTTCCTAAATA 59.615 38.462 0.00 0.00 0.00 1.40
2821 4647 5.191124 ACAAATACTCCCTCCGTTCCTAAAT 59.809 40.000 0.00 0.00 0.00 1.40
2822 4648 4.533311 ACAAATACTCCCTCCGTTCCTAAA 59.467 41.667 0.00 0.00 0.00 1.85
2823 4649 4.098894 ACAAATACTCCCTCCGTTCCTAA 58.901 43.478 0.00 0.00 0.00 2.69
2824 4650 3.716431 ACAAATACTCCCTCCGTTCCTA 58.284 45.455 0.00 0.00 0.00 2.94
2825 4651 2.547990 ACAAATACTCCCTCCGTTCCT 58.452 47.619 0.00 0.00 0.00 3.36
2826 4652 3.345508 AACAAATACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
2827 4653 6.997239 AATAAACAAATACTCCCTCCGTTC 57.003 37.500 0.00 0.00 0.00 3.95
2828 4654 7.770366 AAAATAAACAAATACTCCCTCCGTT 57.230 32.000 0.00 0.00 0.00 4.44
2829 4655 8.323567 TCTAAAATAAACAAATACTCCCTCCGT 58.676 33.333 0.00 0.00 0.00 4.69
2830 4656 8.726870 TCTAAAATAAACAAATACTCCCTCCG 57.273 34.615 0.00 0.00 0.00 4.63
2926 4752 8.220755 ACAACAGTAGCTCAAAATTCTACAAA 57.779 30.769 0.00 0.00 36.16 2.83
2929 4755 8.089115 AGAACAACAGTAGCTCAAAATTCTAC 57.911 34.615 0.00 0.00 34.45 2.59
2987 4815 9.319143 CTAACTATACAGGTGAAGAAAATCAGG 57.681 37.037 0.00 0.00 0.00 3.86
2989 4817 8.540388 AGCTAACTATACAGGTGAAGAAAATCA 58.460 33.333 0.00 0.00 0.00 2.57
3013 4841 2.223044 GCGGTAGTACAAAGATGCAAGC 60.223 50.000 2.06 0.00 0.00 4.01
3064 4892 4.332543 TCACAATCGATGGTAAATCTGTGC 59.667 41.667 4.78 0.00 34.36 4.57
3071 4899 5.351233 GTGTGTTCACAATCGATGGTAAA 57.649 39.130 4.78 0.00 43.37 2.01
3220 5052 4.899502 AGAGGATGATGTTGTTCGACTTT 58.100 39.130 0.00 0.00 0.00 2.66
3763 6299 2.463589 TAGTTTGCAGGCAGACGGGG 62.464 60.000 8.98 0.00 36.35 5.73
3789 6325 2.981400 ATCAGTAAACAAAACGGCCG 57.019 45.000 26.86 26.86 0.00 6.13
3829 6365 3.134127 GATTCCAAGCGCGGCCTT 61.134 61.111 8.83 0.00 0.00 4.35
3835 6371 0.800012 TTTACACCGATTCCAAGCGC 59.200 50.000 0.00 0.00 36.32 5.92
3836 6372 4.868450 TTATTTACACCGATTCCAAGCG 57.132 40.909 0.00 0.00 37.59 4.68
3837 6373 7.699566 TGTATTTATTTACACCGATTCCAAGC 58.300 34.615 0.00 0.00 0.00 4.01
3838 6374 8.342634 CCTGTATTTATTTACACCGATTCCAAG 58.657 37.037 0.00 0.00 0.00 3.61
3839 6375 7.830201 ACCTGTATTTATTTACACCGATTCCAA 59.170 33.333 0.00 0.00 0.00 3.53
3840 6376 7.281324 CACCTGTATTTATTTACACCGATTCCA 59.719 37.037 0.00 0.00 0.00 3.53
3841 6377 7.281549 ACACCTGTATTTATTTACACCGATTCC 59.718 37.037 0.00 0.00 0.00 3.01
3842 6378 8.205131 ACACCTGTATTTATTTACACCGATTC 57.795 34.615 0.00 0.00 0.00 2.52
3844 6380 9.841295 AATACACCTGTATTTATTTACACCGAT 57.159 29.630 5.06 0.00 45.90 4.18
3877 6413 0.743097 GGCCGGTAAGATACACTCGT 59.257 55.000 1.90 0.00 0.00 4.18
3878 6414 0.742505 TGGCCGGTAAGATACACTCG 59.257 55.000 1.90 0.00 0.00 4.18
3880 6416 1.861982 ACTGGCCGGTAAGATACACT 58.138 50.000 18.00 0.00 0.00 3.55
3881 6417 2.692041 ACTACTGGCCGGTAAGATACAC 59.308 50.000 24.58 0.00 0.00 2.90
3884 6420 3.301794 TCACTACTGGCCGGTAAGATA 57.698 47.619 24.58 4.86 0.00 1.98
3885 6421 2.154567 TCACTACTGGCCGGTAAGAT 57.845 50.000 24.58 10.97 0.00 2.40
3886 6422 2.154567 ATCACTACTGGCCGGTAAGA 57.845 50.000 24.58 23.21 0.00 2.10
3888 6424 2.937873 GCAAATCACTACTGGCCGGTAA 60.938 50.000 24.58 11.32 0.00 2.85
3889 6425 1.406341 GCAAATCACTACTGGCCGGTA 60.406 52.381 23.20 23.20 0.00 4.02
3890 6426 0.676782 GCAAATCACTACTGGCCGGT 60.677 55.000 23.52 23.52 0.00 5.28
3891 6427 0.676466 TGCAAATCACTACTGGCCGG 60.676 55.000 11.02 11.02 0.00 6.13
3892 6428 0.729116 CTGCAAATCACTACTGGCCG 59.271 55.000 0.00 0.00 0.00 6.13
3893 6429 1.098050 CCTGCAAATCACTACTGGCC 58.902 55.000 0.00 0.00 0.00 5.36
3895 6431 2.086869 CCACCTGCAAATCACTACTGG 58.913 52.381 0.00 0.00 0.00 4.00
3896 6432 3.057969 TCCACCTGCAAATCACTACTG 57.942 47.619 0.00 0.00 0.00 2.74
3897 6433 3.788227 TTCCACCTGCAAATCACTACT 57.212 42.857 0.00 0.00 0.00 2.57
3900 6436 1.608590 CGTTTCCACCTGCAAATCACT 59.391 47.619 0.00 0.00 0.00 3.41
3901 6437 1.606668 TCGTTTCCACCTGCAAATCAC 59.393 47.619 0.00 0.00 0.00 3.06
3902 6438 1.974265 TCGTTTCCACCTGCAAATCA 58.026 45.000 0.00 0.00 0.00 2.57
3905 6441 2.732597 CGTTTTCGTTTCCACCTGCAAA 60.733 45.455 0.00 0.00 38.65 3.68
3906 6442 1.202200 CGTTTTCGTTTCCACCTGCAA 60.202 47.619 0.00 0.00 38.65 4.08
3907 6443 0.378962 CGTTTTCGTTTCCACCTGCA 59.621 50.000 0.00 0.00 38.65 4.41
3908 6444 0.658897 TCGTTTTCGTTTCCACCTGC 59.341 50.000 0.00 0.00 44.46 4.85
3909 6445 1.332552 CGTCGTTTTCGTTTCCACCTG 60.333 52.381 0.00 0.00 44.46 4.00
3911 6447 0.041926 CCGTCGTTTTCGTTTCCACC 60.042 55.000 0.00 0.00 44.46 4.61
3913 6449 1.642753 GCCGTCGTTTTCGTTTCCA 59.357 52.632 0.00 0.00 44.46 3.53
3914 6450 1.082561 GGCCGTCGTTTTCGTTTCC 60.083 57.895 0.00 0.00 44.46 3.13
3916 6452 2.627555 CGGCCGTCGTTTTCGTTT 59.372 55.556 19.50 0.00 44.46 3.60
3917 6453 3.340253 CCGGCCGTCGTTTTCGTT 61.340 61.111 26.12 0.00 44.46 3.85
3918 6454 4.590522 ACCGGCCGTCGTTTTCGT 62.591 61.111 26.12 9.18 44.46 3.85
3919 6455 4.067016 CACCGGCCGTCGTTTTCG 62.067 66.667 26.12 8.44 45.64 3.46
3920 6456 3.719144 CCACCGGCCGTCGTTTTC 61.719 66.667 26.12 0.00 37.11 2.29
3931 6467 1.808343 GTAAAAGTTACAGGCCACCGG 59.192 52.381 5.01 0.00 0.00 5.28
3932 6468 2.496111 TGTAAAAGTTACAGGCCACCG 58.504 47.619 5.01 0.00 0.00 4.94
3933 6469 3.887110 ACTTGTAAAAGTTACAGGCCACC 59.113 43.478 5.01 0.00 0.00 4.61
3936 6472 6.812879 ATACACTTGTAAAAGTTACAGGCC 57.187 37.500 9.43 0.00 33.76 5.19
3937 6473 7.867752 TGAATACACTTGTAAAAGTTACAGGC 58.132 34.615 9.43 0.00 33.76 4.85
3948 6484 9.531942 TCGTTTCTACTTTGAATACACTTGTAA 57.468 29.630 0.00 0.00 33.76 2.41
3949 6485 8.971321 GTCGTTTCTACTTTGAATACACTTGTA 58.029 33.333 0.00 0.00 34.67 2.41
3950 6486 7.493320 TGTCGTTTCTACTTTGAATACACTTGT 59.507 33.333 0.00 0.00 0.00 3.16
3951 6487 7.847487 TGTCGTTTCTACTTTGAATACACTTG 58.153 34.615 0.00 0.00 0.00 3.16
3952 6488 8.603242 ATGTCGTTTCTACTTTGAATACACTT 57.397 30.769 0.00 0.00 0.00 3.16
3955 6491 7.658167 TGGAATGTCGTTTCTACTTTGAATACA 59.342 33.333 0.00 0.00 0.00 2.29
3956 6492 8.025243 TGGAATGTCGTTTCTACTTTGAATAC 57.975 34.615 0.00 0.00 0.00 1.89
3957 6493 8.610248 TTGGAATGTCGTTTCTACTTTGAATA 57.390 30.769 0.00 0.00 0.00 1.75
3961 6497 6.491394 TGTTTGGAATGTCGTTTCTACTTTG 58.509 36.000 0.00 0.00 0.00 2.77
3963 6499 6.053005 TCTGTTTGGAATGTCGTTTCTACTT 58.947 36.000 0.00 0.00 0.00 2.24
3965 6501 5.614887 GCTCTGTTTGGAATGTCGTTTCTAC 60.615 44.000 0.00 0.00 0.00 2.59
3966 6502 4.451096 GCTCTGTTTGGAATGTCGTTTCTA 59.549 41.667 0.00 0.00 0.00 2.10
3967 6503 3.251004 GCTCTGTTTGGAATGTCGTTTCT 59.749 43.478 0.00 0.00 0.00 2.52
3968 6504 3.555518 GCTCTGTTTGGAATGTCGTTTC 58.444 45.455 0.00 0.00 0.00 2.78
3969 6505 2.293399 GGCTCTGTTTGGAATGTCGTTT 59.707 45.455 0.00 0.00 0.00 3.60
3970 6506 1.880027 GGCTCTGTTTGGAATGTCGTT 59.120 47.619 0.00 0.00 0.00 3.85
3971 6507 1.072331 AGGCTCTGTTTGGAATGTCGT 59.928 47.619 0.00 0.00 0.00 4.34
3973 6509 4.327680 ACTTAGGCTCTGTTTGGAATGTC 58.672 43.478 0.00 0.00 0.00 3.06
3975 6511 6.817765 TTTACTTAGGCTCTGTTTGGAATG 57.182 37.500 0.00 0.00 0.00 2.67
3976 6512 8.306761 CAAATTTACTTAGGCTCTGTTTGGAAT 58.693 33.333 0.00 0.00 0.00 3.01
3977 6513 7.657336 CAAATTTACTTAGGCTCTGTTTGGAA 58.343 34.615 0.00 0.00 0.00 3.53
3978 6514 6.294508 GCAAATTTACTTAGGCTCTGTTTGGA 60.295 38.462 0.00 0.00 0.00 3.53
3980 6516 6.681777 AGCAAATTTACTTAGGCTCTGTTTG 58.318 36.000 0.00 0.00 0.00 2.93
3981 6517 6.901081 AGCAAATTTACTTAGGCTCTGTTT 57.099 33.333 0.00 0.00 0.00 2.83
3982 6518 6.071896 GGAAGCAAATTTACTTAGGCTCTGTT 60.072 38.462 3.59 0.00 29.96 3.16
3983 6519 5.416013 GGAAGCAAATTTACTTAGGCTCTGT 59.584 40.000 3.59 0.00 29.96 3.41
3985 6521 4.950475 GGGAAGCAAATTTACTTAGGCTCT 59.050 41.667 3.59 0.00 29.96 4.09
3986 6522 4.201920 CGGGAAGCAAATTTACTTAGGCTC 60.202 45.833 3.59 0.00 29.96 4.70
3987 6523 3.694566 CGGGAAGCAAATTTACTTAGGCT 59.305 43.478 3.59 0.00 31.11 4.58
3989 6525 5.638596 AACGGGAAGCAAATTTACTTAGG 57.361 39.130 3.59 0.06 0.00 2.69
3990 6526 7.700656 CCAATAACGGGAAGCAAATTTACTTAG 59.299 37.037 3.59 2.33 0.00 2.18
4157 6700 8.915871 AATCCACATTGAATCGAAATTAGTTG 57.084 30.769 0.00 0.00 0.00 3.16
4207 7086 1.141053 ACCATCGCCTAAATGGGAGAC 59.859 52.381 7.05 0.00 46.65 3.36
4446 7329 5.739358 GCAGGGTTAGTAGTAGCACTATTGG 60.739 48.000 0.00 0.00 32.65 3.16
4560 7445 0.926293 CCCTTTGCCCCTCCTGATAA 59.074 55.000 0.00 0.00 0.00 1.75
4571 7456 2.189499 CCTCTATGCGCCCTTTGCC 61.189 63.158 4.18 0.00 36.24 4.52
4639 7524 4.407621 TCCCGTGATTAATTAGGCTCTCAA 59.592 41.667 0.00 0.00 0.00 3.02
4640 7525 3.964688 TCCCGTGATTAATTAGGCTCTCA 59.035 43.478 0.00 0.00 0.00 3.27
4641 7526 4.281182 TCTCCCGTGATTAATTAGGCTCTC 59.719 45.833 0.00 0.00 0.00 3.20
4642 7527 4.039366 GTCTCCCGTGATTAATTAGGCTCT 59.961 45.833 0.00 0.00 0.00 4.09
4643 7528 4.308265 GTCTCCCGTGATTAATTAGGCTC 58.692 47.826 0.00 0.00 0.00 4.70
4644 7529 3.071167 GGTCTCCCGTGATTAATTAGGCT 59.929 47.826 0.00 0.00 0.00 4.58
4645 7530 3.400255 GGTCTCCCGTGATTAATTAGGC 58.600 50.000 0.00 0.00 0.00 3.93
4646 7531 4.004196 GGGTCTCCCGTGATTAATTAGG 57.996 50.000 0.00 0.00 32.13 2.69
4675 7560 3.219281 AGCTTCGGAGTTTGCCTAAAAA 58.781 40.909 0.00 0.00 0.00 1.94
4676 7561 2.858745 AGCTTCGGAGTTTGCCTAAAA 58.141 42.857 0.00 0.00 0.00 1.52
4677 7562 2.561478 AGCTTCGGAGTTTGCCTAAA 57.439 45.000 0.00 0.00 0.00 1.85
4678 7563 2.561478 AAGCTTCGGAGTTTGCCTAA 57.439 45.000 0.00 0.00 0.00 2.69
4679 7564 2.561478 AAAGCTTCGGAGTTTGCCTA 57.439 45.000 0.00 0.00 0.00 3.93
4680 7565 1.692411 AAAAGCTTCGGAGTTTGCCT 58.308 45.000 0.00 0.00 0.00 4.75
4681 7566 3.850122 ATAAAAGCTTCGGAGTTTGCC 57.150 42.857 0.00 0.00 0.00 4.52
4682 7567 4.786575 CGTAATAAAAGCTTCGGAGTTTGC 59.213 41.667 0.00 0.00 0.00 3.68
4683 7568 6.013689 GTCGTAATAAAAGCTTCGGAGTTTG 58.986 40.000 0.00 0.00 0.00 2.93
4684 7569 5.164022 CGTCGTAATAAAAGCTTCGGAGTTT 60.164 40.000 0.00 0.00 0.00 2.66
4685 7570 4.325472 CGTCGTAATAAAAGCTTCGGAGTT 59.675 41.667 0.00 0.00 0.00 3.01
4686 7571 3.855950 CGTCGTAATAAAAGCTTCGGAGT 59.144 43.478 0.00 0.00 0.00 3.85
4687 7572 3.855950 ACGTCGTAATAAAAGCTTCGGAG 59.144 43.478 0.00 0.00 0.00 4.63
4688 7573 3.836949 ACGTCGTAATAAAAGCTTCGGA 58.163 40.909 0.00 0.00 0.00 4.55
4689 7574 3.609373 TGACGTCGTAATAAAAGCTTCGG 59.391 43.478 11.62 0.00 0.00 4.30
4690 7575 4.088923 TGTGACGTCGTAATAAAAGCTTCG 59.911 41.667 11.62 0.00 0.00 3.79
4691 7576 5.505165 TGTGACGTCGTAATAAAAGCTTC 57.495 39.130 11.62 0.00 0.00 3.86
4692 7577 5.910637 TTGTGACGTCGTAATAAAAGCTT 57.089 34.783 11.62 0.00 0.00 3.74
4693 7578 5.407387 ACATTGTGACGTCGTAATAAAAGCT 59.593 36.000 11.62 0.00 0.00 3.74
4694 7579 5.614760 ACATTGTGACGTCGTAATAAAAGC 58.385 37.500 11.62 0.00 0.00 3.51
4695 7580 9.033262 GTAAACATTGTGACGTCGTAATAAAAG 57.967 33.333 11.62 4.92 0.00 2.27
4696 7581 8.546244 TGTAAACATTGTGACGTCGTAATAAAA 58.454 29.630 11.62 0.00 0.00 1.52
4697 7582 8.070007 TGTAAACATTGTGACGTCGTAATAAA 57.930 30.769 11.62 0.00 0.00 1.40
4698 7583 7.634809 TGTAAACATTGTGACGTCGTAATAA 57.365 32.000 11.62 0.00 0.00 1.40
4699 7584 7.201453 CCATGTAAACATTGTGACGTCGTAATA 60.201 37.037 11.62 0.00 33.61 0.98
4700 7585 6.401688 CCATGTAAACATTGTGACGTCGTAAT 60.402 38.462 11.62 10.84 33.61 1.89
4701 7586 5.107414 CCATGTAAACATTGTGACGTCGTAA 60.107 40.000 11.62 8.87 33.61 3.18
4702 7587 4.386350 CCATGTAAACATTGTGACGTCGTA 59.614 41.667 11.62 0.00 33.61 3.43
4703 7588 3.185594 CCATGTAAACATTGTGACGTCGT 59.814 43.478 11.62 0.00 33.61 4.34
4704 7589 3.430556 TCCATGTAAACATTGTGACGTCG 59.569 43.478 11.62 0.00 33.61 5.12
4705 7590 4.665645 CGTCCATGTAAACATTGTGACGTC 60.666 45.833 20.47 9.11 33.61 4.34
4706 7591 3.185594 CGTCCATGTAAACATTGTGACGT 59.814 43.478 20.47 0.00 33.61 4.34
4707 7592 3.430556 TCGTCCATGTAAACATTGTGACG 59.569 43.478 21.65 21.65 33.61 4.35
4708 7593 5.351233 TTCGTCCATGTAAACATTGTGAC 57.649 39.130 0.00 0.97 33.61 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.