Multiple sequence alignment - TraesCS1D01G301100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G301100 chr1D 100.000 2944 0 0 2886 5829 398974589 398977532 0.000000e+00 5437.0
1 TraesCS1D01G301100 chr1D 100.000 2179 0 0 1 2179 398971704 398973882 0.000000e+00 4024.0
2 TraesCS1D01G301100 chr1D 96.429 56 2 0 4019 4074 398975597 398975652 6.220000e-15 93.5
3 TraesCS1D01G301100 chr1D 96.429 56 2 0 3894 3949 398975722 398975777 6.220000e-15 93.5
4 TraesCS1D01G301100 chr1B 94.568 1933 72 12 262 2178 534662173 534664088 0.000000e+00 2957.0
5 TraesCS1D01G301100 chr1B 95.802 1834 67 5 3997 5829 534665401 534667225 0.000000e+00 2952.0
6 TraesCS1D01G301100 chr1B 83.696 276 29 13 3676 3945 534665206 534665471 4.510000e-61 246.0
7 TraesCS1D01G301100 chr1A 94.731 1822 76 8 4010 5829 495702409 495704212 0.000000e+00 2815.0
8 TraesCS1D01G301100 chr1A 95.014 1404 44 7 789 2178 495699389 495700780 0.000000e+00 2182.0
9 TraesCS1D01G301100 chr1A 88.906 640 43 12 2886 3503 495701301 495701934 0.000000e+00 763.0
10 TraesCS1D01G301100 chr1A 87.129 505 34 19 96 596 495697331 495697808 1.430000e-150 544.0
11 TraesCS1D01G301100 chr1A 84.807 441 43 16 3510 3946 495702048 495702468 6.980000e-114 422.0
12 TraesCS1D01G301100 chr3B 98.936 94 1 0 3724 3817 821733018 821733111 1.000000e-37 169.0
13 TraesCS1D01G301100 chr3B 95.876 97 2 2 3722 3816 822187985 822188081 7.820000e-34 156.0
14 TraesCS1D01G301100 chr3B 96.739 92 3 0 3724 3815 829292353 829292262 2.810000e-33 154.0
15 TraesCS1D01G301100 chr3D 95.789 95 3 1 3724 3818 598715386 598715479 1.010000e-32 152.0
16 TraesCS1D01G301100 chr3D 94.898 98 3 2 3722 3818 610153030 610153126 1.010000e-32 152.0
17 TraesCS1D01G301100 chr3D 94.792 96 5 0 3722 3817 610337966 610338061 3.640000e-32 150.0
18 TraesCS1D01G301100 chr3A 91.071 112 3 4 3722 3827 744380770 744380880 1.690000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G301100 chr1D 398971704 398977532 5828 False 2412.000000 5437 98.214500 1 5829 4 chr1D.!!$F1 5828
1 TraesCS1D01G301100 chr1B 534662173 534667225 5052 False 2051.666667 2957 91.355333 262 5829 3 chr1B.!!$F1 5567
2 TraesCS1D01G301100 chr1A 495697331 495704212 6881 False 1345.200000 2815 90.117400 96 5829 5 chr1A.!!$F1 5733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 2398 0.388907 CTCGCTGGCCCATTGTTTTG 60.389 55.0 0.00 0.0 0.00 2.44 F
1907 3483 0.456824 CAAGCGACGCTAGCTCAAGA 60.457 55.0 24.77 0.0 45.31 3.02 F
3396 5006 0.257039 GACGACCACCCCTACTAGGA 59.743 60.0 3.36 0.0 37.67 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 3574 1.073897 GCACTCCTTGGCTCCAACT 59.926 57.895 0.0 0.0 0.0 3.16 R
3503 5133 0.037326 CGGTGCCTCTTTGTGCTCTA 60.037 55.000 0.0 0.0 0.0 2.43 R
4851 6687 1.073923 AGGGGTTTGATCGCTTGTTCT 59.926 47.619 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.525578 TCGAACTATATAATCCGGAATGCT 57.474 37.500 9.01 0.00 0.00 3.79
24 25 6.330278 TCGAACTATATAATCCGGAATGCTG 58.670 40.000 9.01 0.00 0.00 4.41
25 26 6.152154 TCGAACTATATAATCCGGAATGCTGA 59.848 38.462 9.01 0.00 0.00 4.26
26 27 6.980978 CGAACTATATAATCCGGAATGCTGAT 59.019 38.462 9.01 0.00 0.00 2.90
27 28 7.043125 CGAACTATATAATCCGGAATGCTGATG 60.043 40.741 9.01 0.00 0.00 3.07
28 29 7.187824 ACTATATAATCCGGAATGCTGATGT 57.812 36.000 9.01 0.00 0.00 3.06
29 30 8.306313 ACTATATAATCCGGAATGCTGATGTA 57.694 34.615 9.01 0.00 0.00 2.29
30 31 8.417106 ACTATATAATCCGGAATGCTGATGTAG 58.583 37.037 9.01 5.33 0.00 2.74
31 32 5.745312 ATAATCCGGAATGCTGATGTAGA 57.255 39.130 9.01 0.00 0.00 2.59
32 33 4.630644 AATCCGGAATGCTGATGTAGAT 57.369 40.909 9.01 0.00 0.00 1.98
33 34 3.667497 TCCGGAATGCTGATGTAGATC 57.333 47.619 0.00 0.00 0.00 2.75
34 35 2.300152 TCCGGAATGCTGATGTAGATCC 59.700 50.000 0.00 0.00 0.00 3.36
35 36 2.301296 CCGGAATGCTGATGTAGATCCT 59.699 50.000 0.00 0.00 0.00 3.24
36 37 3.324117 CGGAATGCTGATGTAGATCCTG 58.676 50.000 0.00 0.00 0.00 3.86
37 38 3.672808 GGAATGCTGATGTAGATCCTGG 58.327 50.000 0.00 0.00 0.00 4.45
38 39 3.326006 GGAATGCTGATGTAGATCCTGGA 59.674 47.826 0.00 0.00 0.00 3.86
39 40 4.314121 GAATGCTGATGTAGATCCTGGAC 58.686 47.826 0.00 0.00 0.00 4.02
40 41 3.037851 TGCTGATGTAGATCCTGGACT 57.962 47.619 0.00 1.11 0.00 3.85
41 42 4.184649 TGCTGATGTAGATCCTGGACTA 57.815 45.455 0.00 0.08 0.00 2.59
42 43 3.891977 TGCTGATGTAGATCCTGGACTAC 59.108 47.826 20.33 20.33 39.27 2.73
43 44 3.257127 GCTGATGTAGATCCTGGACTACC 59.743 52.174 22.42 14.22 38.40 3.18
44 45 4.735369 CTGATGTAGATCCTGGACTACCT 58.265 47.826 22.42 17.02 38.40 3.08
45 46 5.144100 CTGATGTAGATCCTGGACTACCTT 58.856 45.833 22.42 15.12 38.40 3.50
46 47 5.529289 TGATGTAGATCCTGGACTACCTTT 58.471 41.667 22.42 13.54 38.40 3.11
47 48 6.679542 TGATGTAGATCCTGGACTACCTTTA 58.320 40.000 22.42 11.86 38.40 1.85
48 49 6.550108 TGATGTAGATCCTGGACTACCTTTAC 59.450 42.308 22.42 9.60 38.40 2.01
49 50 5.206587 TGTAGATCCTGGACTACCTTTACC 58.793 45.833 22.42 7.12 38.40 2.85
50 51 3.297736 AGATCCTGGACTACCTTTACCG 58.702 50.000 0.00 0.00 37.04 4.02
51 52 2.905415 TCCTGGACTACCTTTACCGA 57.095 50.000 0.00 0.00 37.04 4.69
52 53 2.731572 TCCTGGACTACCTTTACCGAG 58.268 52.381 0.00 0.00 37.04 4.63
53 54 2.309755 TCCTGGACTACCTTTACCGAGA 59.690 50.000 0.00 0.00 37.04 4.04
54 55 2.688958 CCTGGACTACCTTTACCGAGAG 59.311 54.545 0.00 0.00 37.04 3.20
55 56 3.618351 CTGGACTACCTTTACCGAGAGA 58.382 50.000 0.00 0.00 37.04 3.10
56 57 3.618351 TGGACTACCTTTACCGAGAGAG 58.382 50.000 0.00 0.00 37.04 3.20
57 58 3.265221 TGGACTACCTTTACCGAGAGAGA 59.735 47.826 0.00 0.00 37.04 3.10
58 59 3.878699 GGACTACCTTTACCGAGAGAGAG 59.121 52.174 0.00 0.00 0.00 3.20
59 60 4.383989 GGACTACCTTTACCGAGAGAGAGA 60.384 50.000 0.00 0.00 0.00 3.10
60 61 4.773013 ACTACCTTTACCGAGAGAGAGAG 58.227 47.826 0.00 0.00 0.00 3.20
61 62 4.470664 ACTACCTTTACCGAGAGAGAGAGA 59.529 45.833 0.00 0.00 0.00 3.10
62 63 3.881220 ACCTTTACCGAGAGAGAGAGAG 58.119 50.000 0.00 0.00 0.00 3.20
63 64 3.520317 ACCTTTACCGAGAGAGAGAGAGA 59.480 47.826 0.00 0.00 0.00 3.10
64 65 4.127171 CCTTTACCGAGAGAGAGAGAGAG 58.873 52.174 0.00 0.00 0.00 3.20
65 66 4.141801 CCTTTACCGAGAGAGAGAGAGAGA 60.142 50.000 0.00 0.00 0.00 3.10
66 67 4.665833 TTACCGAGAGAGAGAGAGAGAG 57.334 50.000 0.00 0.00 0.00 3.20
67 68 2.747177 ACCGAGAGAGAGAGAGAGAGA 58.253 52.381 0.00 0.00 0.00 3.10
68 69 2.695666 ACCGAGAGAGAGAGAGAGAGAG 59.304 54.545 0.00 0.00 0.00 3.20
69 70 2.959030 CCGAGAGAGAGAGAGAGAGAGA 59.041 54.545 0.00 0.00 0.00 3.10
70 71 3.005261 CCGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
71 72 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
72 73 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
73 74 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
74 75 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
75 76 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
76 77 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
77 78 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
78 79 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
79 80 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
80 81 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
81 82 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
82 83 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
83 84 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
84 85 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
85 86 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
86 87 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
87 88 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
88 89 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
89 90 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
90 91 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
91 92 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
92 93 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
93 94 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
94 95 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
95 96 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
96 97 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
97 98 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
98 99 4.078922 AGAGAGAGAGAGAGAGAGAGAGGA 60.079 50.000 0.00 0.00 0.00 3.71
99 100 4.624913 AGAGAGAGAGAGAGAGAGAGGAA 58.375 47.826 0.00 0.00 0.00 3.36
100 101 4.653341 AGAGAGAGAGAGAGAGAGAGGAAG 59.347 50.000 0.00 0.00 0.00 3.46
107 108 1.640670 AGAGAGAGAGGAAGTCAGGCT 59.359 52.381 0.00 0.00 0.00 4.58
153 154 6.405397 GCAAAACAGTAGGAAGGTTCTGAAAA 60.405 38.462 0.00 0.00 0.00 2.29
158 159 4.767409 AGTAGGAAGGTTCTGAAAAATGGC 59.233 41.667 0.00 0.00 0.00 4.40
164 165 5.649782 AGGTTCTGAAAAATGGCACTATG 57.350 39.130 0.00 0.00 0.00 2.23
166 167 5.774690 AGGTTCTGAAAAATGGCACTATGAA 59.225 36.000 0.00 0.00 0.00 2.57
171 172 7.322664 TCTGAAAAATGGCACTATGAAATTCC 58.677 34.615 0.00 0.00 0.00 3.01
173 174 7.448420 TGAAAAATGGCACTATGAAATTCCAA 58.552 30.769 0.00 0.00 0.00 3.53
182 183 5.575606 CACTATGAAATTCCAAAGCAGCAAG 59.424 40.000 0.00 0.00 0.00 4.01
205 206 5.360714 AGCAAAGACAGGAAATGAAGAACAA 59.639 36.000 0.00 0.00 0.00 2.83
212 213 4.276678 CAGGAAATGAAGAACAAGCAGACA 59.723 41.667 0.00 0.00 0.00 3.41
221 223 1.418334 ACAAGCAGACACACCTCTCT 58.582 50.000 0.00 0.00 0.00 3.10
245 247 6.280643 TCGTTGTCAAAATCTTCTTCAGAGA 58.719 36.000 0.00 0.00 33.87 3.10
246 248 6.761242 TCGTTGTCAAAATCTTCTTCAGAGAA 59.239 34.615 0.00 0.00 39.54 2.87
247 249 7.279981 TCGTTGTCAAAATCTTCTTCAGAGAAA 59.720 33.333 0.00 0.00 41.19 2.52
248 250 8.072567 CGTTGTCAAAATCTTCTTCAGAGAAAT 58.927 33.333 0.00 0.00 41.19 2.17
249 251 9.178427 GTTGTCAAAATCTTCTTCAGAGAAATG 57.822 33.333 0.00 0.00 41.19 2.32
250 252 8.455903 TGTCAAAATCTTCTTCAGAGAAATGT 57.544 30.769 0.00 0.00 41.19 2.71
251 253 8.347771 TGTCAAAATCTTCTTCAGAGAAATGTG 58.652 33.333 0.00 0.00 41.19 3.21
252 254 7.325579 GTCAAAATCTTCTTCAGAGAAATGTGC 59.674 37.037 0.00 0.00 41.19 4.57
253 255 6.889301 AAATCTTCTTCAGAGAAATGTGCA 57.111 33.333 0.00 0.00 41.19 4.57
254 256 5.876612 ATCTTCTTCAGAGAAATGTGCAC 57.123 39.130 10.75 10.75 41.19 4.57
255 257 4.707105 TCTTCTTCAGAGAAATGTGCACA 58.293 39.130 24.08 24.08 41.19 4.57
256 258 4.512944 TCTTCTTCAGAGAAATGTGCACAC 59.487 41.667 24.37 10.03 41.19 3.82
257 259 3.807553 TCTTCAGAGAAATGTGCACACA 58.192 40.909 24.37 5.85 46.44 3.72
258 260 4.198530 TCTTCAGAGAAATGTGCACACAA 58.801 39.130 24.37 0.00 45.41 3.33
259 261 4.639755 TCTTCAGAGAAATGTGCACACAAA 59.360 37.500 24.37 0.00 45.41 2.83
261 263 5.321959 TCAGAGAAATGTGCACACAAAAA 57.678 34.783 24.37 0.00 45.41 1.94
295 297 2.093764 AGAGATTCTTCGTGGGCTTCTG 60.094 50.000 0.00 0.00 0.00 3.02
323 325 1.272490 GCATAGCACGGTGCCTCTATA 59.728 52.381 28.14 14.66 46.52 1.31
332 334 4.070552 GCCTCTATAGCGGGCGGG 62.071 72.222 16.78 4.78 36.37 6.13
404 406 4.500265 GCACCCAGCCAGAAAGAA 57.500 55.556 0.00 0.00 37.23 2.52
596 602 7.861630 TGAAAAGTTCAATCCGTTCTTTAGAG 58.138 34.615 0.00 0.00 36.59 2.43
608 614 8.095937 TCCGTTCTTTAGAGGATTTTCTTTTC 57.904 34.615 0.00 0.00 0.00 2.29
631 638 2.034939 TGAGAAACCTCTTCACGCGTTA 59.965 45.455 10.22 0.00 29.54 3.18
636 643 2.607187 ACCTCTTCACGCGTTATTCAG 58.393 47.619 10.22 1.61 0.00 3.02
641 648 3.435327 TCTTCACGCGTTATTCAGCAAAT 59.565 39.130 10.22 0.00 0.00 2.32
647 654 5.567534 CACGCGTTATTCAGCAAATAAGTTT 59.432 36.000 10.22 0.00 39.83 2.66
657 664 6.690530 TCAGCAAATAAGTTTGGAGGAATTG 58.309 36.000 3.42 0.00 43.88 2.32
671 678 6.068010 TGGAGGAATTGTTACAAAGTCATGT 58.932 36.000 0.66 0.00 37.32 3.21
692 699 3.561143 TGGTGAAACTAGCCACAATTGT 58.439 40.909 4.92 4.92 36.74 2.71
693 700 3.568007 TGGTGAAACTAGCCACAATTGTC 59.432 43.478 8.48 0.00 36.74 3.18
694 701 3.821033 GGTGAAACTAGCCACAATTGTCT 59.179 43.478 8.48 6.57 36.74 3.41
695 702 5.001232 GGTGAAACTAGCCACAATTGTCTA 58.999 41.667 8.48 7.43 36.74 2.59
696 703 5.106673 GGTGAAACTAGCCACAATTGTCTAC 60.107 44.000 8.48 0.83 36.74 2.59
697 704 5.001232 TGAAACTAGCCACAATTGTCTACC 58.999 41.667 8.48 0.00 0.00 3.18
698 705 4.634012 AACTAGCCACAATTGTCTACCA 57.366 40.909 8.48 0.00 0.00 3.25
699 706 4.634012 ACTAGCCACAATTGTCTACCAA 57.366 40.909 8.48 0.00 37.49 3.67
781 789 3.831911 AGGAAATTGAAAAGCCCAATCGA 59.168 39.130 0.00 0.00 33.51 3.59
785 793 3.658757 TTGAAAAGCCCAATCGAAAGG 57.341 42.857 0.00 0.00 0.00 3.11
838 2398 0.388907 CTCGCTGGCCCATTGTTTTG 60.389 55.000 0.00 0.00 0.00 2.44
870 2430 2.279918 GTTATCCCATCCGCGCGT 60.280 61.111 29.95 8.36 0.00 6.01
1139 2705 3.151022 GGGGGACGAGCTCCTCAG 61.151 72.222 8.47 0.00 42.37 3.35
1290 2862 2.667536 AGCGATGCGGCATCCATC 60.668 61.111 31.11 21.58 37.57 3.51
1465 3037 3.360423 ATCCCGGACGAGCTCCTCA 62.360 63.158 8.47 0.00 36.80 3.86
1466 3038 3.522731 CCCGGACGAGCTCCTCAG 61.523 72.222 8.47 7.01 36.80 3.35
1904 3480 2.507102 GCAAGCGACGCTAGCTCA 60.507 61.111 24.77 0.00 45.31 4.26
1906 3482 1.994467 CAAGCGACGCTAGCTCAAG 59.006 57.895 24.77 3.63 45.31 3.02
1907 3483 0.456824 CAAGCGACGCTAGCTCAAGA 60.457 55.000 24.77 0.00 45.31 3.02
1910 3486 1.064946 CGACGCTAGCTCAAGAGGG 59.935 63.158 13.93 0.00 0.00 4.30
1994 3574 3.517296 TTGCAGATAAAAGTGGGGACA 57.483 42.857 0.00 0.00 38.70 4.02
2111 3691 2.027625 CGCCGACAAGACCAAGTCC 61.028 63.158 0.00 0.00 32.18 3.85
2178 3761 6.851330 GGTATGCTTCTTCATAAATAACGCAC 59.149 38.462 0.00 0.00 31.43 5.34
2925 4508 2.248431 GCGACACAACGAAGCACC 59.752 61.111 0.00 0.00 35.09 5.01
2929 4512 0.653636 GACACAACGAAGCACCGAAA 59.346 50.000 4.78 0.00 0.00 3.46
2935 4518 0.661020 ACGAAGCACCGAAAAACCAG 59.339 50.000 4.78 0.00 0.00 4.00
2958 4541 1.190103 GAACACGTCGGAAAACCGTAC 59.810 52.381 8.46 5.21 32.81 3.67
2974 4557 1.338011 CGTACCGAAACCAAAGCCCTA 60.338 52.381 0.00 0.00 0.00 3.53
3008 4591 1.626321 TCGTTACCAAGCAGATCCCAA 59.374 47.619 0.00 0.00 0.00 4.12
3064 4647 3.860605 CCGGCGATGATGTCCCCA 61.861 66.667 9.30 0.00 0.00 4.96
3080 4663 1.267121 CCCAAGGAGGAGAAAGACGA 58.733 55.000 0.00 0.00 41.22 4.20
3141 4725 1.248486 CCTCAGAGTCAAGGTCGTCA 58.752 55.000 0.00 0.00 0.00 4.35
3176 4760 1.270550 CACAACCCCACATCAAAGCTC 59.729 52.381 0.00 0.00 0.00 4.09
3197 4781 6.843861 AGCTCTCAAGATATTCTAGGGACTTT 59.156 38.462 0.00 0.00 41.75 2.66
3210 4794 0.387239 GGACTTTGCACGCATTGTCC 60.387 55.000 20.49 20.49 39.51 4.02
3296 4880 2.093500 CGAATCACCCTTCCATGAGTCA 60.093 50.000 0.00 0.00 39.34 3.41
3301 4885 3.843619 TCACCCTTCCATGAGTCACAATA 59.156 43.478 0.00 0.00 0.00 1.90
3321 4925 1.202371 AGACGACGTGAAAGTGCTTCA 60.202 47.619 4.58 0.00 41.93 3.02
3334 4938 0.749818 TGCTTCAAAAGGTGTCGGCA 60.750 50.000 0.00 0.00 0.00 5.69
3340 4944 4.988598 AAGGTGTCGGCAGGTGCG 62.989 66.667 0.00 0.00 43.26 5.34
3396 5006 0.257039 GACGACCACCCCTACTAGGA 59.743 60.000 3.36 0.00 37.67 2.94
3481 5111 2.676471 GCCGCCATCAACCACCTT 60.676 61.111 0.00 0.00 0.00 3.50
3505 5135 6.887376 TTTTAGACTAAAGCACGCTGATAG 57.113 37.500 7.67 9.43 0.00 2.08
3506 5136 5.830000 TTAGACTAAAGCACGCTGATAGA 57.170 39.130 15.31 0.00 0.00 1.98
3507 5137 4.300189 AGACTAAAGCACGCTGATAGAG 57.700 45.455 15.31 2.99 0.00 2.43
3508 5138 2.792116 GACTAAAGCACGCTGATAGAGC 59.208 50.000 15.31 0.00 45.20 4.09
3536 5275 1.003718 CACCGGAAGAGTTGGGGAC 60.004 63.158 9.46 0.00 0.00 4.46
3559 5298 1.017387 GCAAGCCTATTCTTCCCACG 58.983 55.000 0.00 0.00 0.00 4.94
3561 5300 2.711542 CAAGCCTATTCTTCCCACGTT 58.288 47.619 0.00 0.00 0.00 3.99
3593 5337 5.353956 TGATGAGGTATGTGTGTTAACATGC 59.646 40.000 12.26 8.35 40.93 4.06
3606 5350 4.220382 TGTTAACATGCTTGGAAGGATTGG 59.780 41.667 3.59 0.00 34.64 3.16
3607 5351 2.610438 ACATGCTTGGAAGGATTGGT 57.390 45.000 4.44 0.00 34.64 3.67
3610 5354 3.007182 ACATGCTTGGAAGGATTGGTTTG 59.993 43.478 4.44 0.00 34.64 2.93
3613 5357 2.232208 GCTTGGAAGGATTGGTTTGAGG 59.768 50.000 0.00 0.00 0.00 3.86
3667 5415 5.125097 TCCGTGAGTCTTAGTTATCCAAGTC 59.875 44.000 0.00 0.00 0.00 3.01
3818 5654 2.092968 TGAGCTAATAGGCCTGTTGTGG 60.093 50.000 23.85 14.32 0.00 4.17
3823 5659 1.563924 ATAGGCCTGTTGTGGTACGA 58.436 50.000 17.99 0.00 0.00 3.43
3825 5661 0.470766 AGGCCTGTTGTGGTACGAAA 59.529 50.000 3.11 0.00 0.00 3.46
3826 5662 1.073284 AGGCCTGTTGTGGTACGAAAT 59.927 47.619 3.11 0.00 0.00 2.17
3828 5664 2.147958 GCCTGTTGTGGTACGAAATGA 58.852 47.619 0.00 0.00 0.00 2.57
3870 5706 9.985318 GATACATTGAATAAATCTCATGCTAGC 57.015 33.333 8.10 8.10 0.00 3.42
3871 5707 7.812690 ACATTGAATAAATCTCATGCTAGCA 57.187 32.000 21.85 21.85 0.00 3.49
3872 5708 7.872881 ACATTGAATAAATCTCATGCTAGCAG 58.127 34.615 23.89 14.76 0.00 4.24
3873 5709 5.936686 TGAATAAATCTCATGCTAGCAGC 57.063 39.130 23.89 0.00 42.82 5.25
3884 5720 2.138596 GCTAGCAGCAAAGCAAAACA 57.861 45.000 10.63 0.00 41.89 2.83
3885 5721 1.788886 GCTAGCAGCAAAGCAAAACAC 59.211 47.619 10.63 0.00 41.89 3.32
3886 5722 2.397549 CTAGCAGCAAAGCAAAACACC 58.602 47.619 0.00 0.00 36.85 4.16
3887 5723 0.179076 AGCAGCAAAGCAAAACACCC 60.179 50.000 0.00 0.00 36.85 4.61
3888 5724 1.489881 GCAGCAAAGCAAAACACCCG 61.490 55.000 0.00 0.00 0.00 5.28
3889 5725 1.227234 AGCAAAGCAAAACACCCGC 60.227 52.632 0.00 0.00 0.00 6.13
3890 5726 1.227234 GCAAAGCAAAACACCCGCT 60.227 52.632 0.00 0.00 37.68 5.52
3891 5727 1.215014 GCAAAGCAAAACACCCGCTC 61.215 55.000 0.00 0.00 34.11 5.03
3892 5728 0.934436 CAAAGCAAAACACCCGCTCG 60.934 55.000 0.00 0.00 34.11 5.03
3893 5729 1.098712 AAAGCAAAACACCCGCTCGA 61.099 50.000 0.00 0.00 34.11 4.04
3894 5730 1.782028 AAGCAAAACACCCGCTCGAC 61.782 55.000 0.00 0.00 34.11 4.20
3895 5731 2.549282 CAAAACACCCGCTCGACG 59.451 61.111 0.00 0.00 43.15 5.12
3896 5732 3.343421 AAAACACCCGCTCGACGC 61.343 61.111 0.00 0.09 41.76 5.19
3912 5748 2.904866 GCCCGCAATGGCCGATAA 60.905 61.111 0.00 0.00 46.11 1.75
3913 5749 2.485795 GCCCGCAATGGCCGATAAA 61.486 57.895 0.00 0.00 46.11 1.40
3914 5750 1.358759 CCCGCAATGGCCGATAAAC 59.641 57.895 0.00 0.00 36.38 2.01
3915 5751 1.101049 CCCGCAATGGCCGATAAACT 61.101 55.000 0.00 0.00 36.38 2.66
3916 5752 0.307760 CCGCAATGGCCGATAAACTC 59.692 55.000 0.00 0.00 36.38 3.01
3917 5753 0.307760 CGCAATGGCCGATAAACTCC 59.692 55.000 0.00 0.00 36.38 3.85
3918 5754 1.388547 GCAATGGCCGATAAACTCCA 58.611 50.000 0.00 0.00 0.00 3.86
3919 5755 1.748493 GCAATGGCCGATAAACTCCAA 59.252 47.619 0.00 0.00 31.66 3.53
3920 5756 2.165437 GCAATGGCCGATAAACTCCAAA 59.835 45.455 0.00 0.00 31.66 3.28
3921 5757 3.769536 CAATGGCCGATAAACTCCAAAC 58.230 45.455 0.00 0.00 31.66 2.93
3922 5758 1.444836 TGGCCGATAAACTCCAAACG 58.555 50.000 0.00 0.00 0.00 3.60
3923 5759 0.098200 GGCCGATAAACTCCAAACGC 59.902 55.000 0.00 0.00 0.00 4.84
3924 5760 0.247537 GCCGATAAACTCCAAACGCG 60.248 55.000 3.53 3.53 0.00 6.01
3925 5761 0.247537 CCGATAAACTCCAAACGCGC 60.248 55.000 5.73 0.00 0.00 6.86
3926 5762 0.583083 CGATAAACTCCAAACGCGCG 60.583 55.000 30.96 30.96 0.00 6.86
3927 5763 0.856080 GATAAACTCCAAACGCGCGC 60.856 55.000 32.58 23.91 0.00 6.86
3939 5775 4.152625 GCGCGCGCTCTGACATTT 62.153 61.111 44.38 0.00 38.26 2.32
3940 5776 2.276244 CGCGCGCTCTGACATTTG 60.276 61.111 30.48 5.07 0.00 2.32
3941 5777 2.729675 CGCGCGCTCTGACATTTGA 61.730 57.895 30.48 0.00 0.00 2.69
3942 5778 1.497278 GCGCGCTCTGACATTTGAA 59.503 52.632 26.67 0.00 0.00 2.69
3943 5779 0.790866 GCGCGCTCTGACATTTGAAC 60.791 55.000 26.67 0.00 0.00 3.18
3950 5786 4.293415 GCTCTGACATTTGAACTTGTTGG 58.707 43.478 0.00 0.00 0.00 3.77
3954 5790 4.619973 TGACATTTGAACTTGTTGGATGC 58.380 39.130 0.00 0.00 0.00 3.91
3974 5810 6.095440 GGATGCTAAAGTGTACATTGGACAAT 59.905 38.462 2.53 0.00 0.00 2.71
3975 5811 6.892658 TGCTAAAGTGTACATTGGACAATT 57.107 33.333 8.85 8.85 36.72 2.32
3976 5812 7.283625 TGCTAAAGTGTACATTGGACAATTT 57.716 32.000 25.52 25.52 44.56 1.82
3977 5813 7.721402 TGCTAAAGTGTACATTGGACAATTTT 58.279 30.769 26.87 19.84 40.98 1.82
3978 5814 7.651304 TGCTAAAGTGTACATTGGACAATTTTG 59.349 33.333 26.87 24.83 40.98 2.44
3979 5815 7.865385 GCTAAAGTGTACATTGGACAATTTTGA 59.135 33.333 28.22 15.21 40.98 2.69
3980 5816 9.912634 CTAAAGTGTACATTGGACAATTTTGAT 57.087 29.630 26.87 10.24 40.98 2.57
3981 5817 8.592105 AAAGTGTACATTGGACAATTTTGATG 57.408 30.769 19.02 0.00 40.98 3.07
3982 5818 6.158598 AGTGTACATTGGACAATTTTGATGC 58.841 36.000 2.53 0.00 0.00 3.91
3983 5819 6.015180 AGTGTACATTGGACAATTTTGATGCT 60.015 34.615 2.53 0.00 0.00 3.79
3984 5820 7.176515 AGTGTACATTGGACAATTTTGATGCTA 59.823 33.333 2.53 0.00 0.00 3.49
3985 5821 7.485913 GTGTACATTGGACAATTTTGATGCTAG 59.514 37.037 2.53 0.00 0.00 3.42
3986 5822 5.413499 ACATTGGACAATTTTGATGCTAGC 58.587 37.500 8.10 8.10 0.00 3.42
3987 5823 5.047164 ACATTGGACAATTTTGATGCTAGCA 60.047 36.000 21.85 21.85 0.00 3.49
3988 5824 4.707030 TGGACAATTTTGATGCTAGCAG 57.293 40.909 23.89 9.12 0.00 4.24
3989 5825 3.444742 TGGACAATTTTGATGCTAGCAGG 59.555 43.478 23.89 7.14 0.00 4.85
3990 5826 3.696051 GGACAATTTTGATGCTAGCAGGA 59.304 43.478 23.89 9.01 0.00 3.86
3991 5827 4.201990 GGACAATTTTGATGCTAGCAGGAG 60.202 45.833 23.89 8.97 0.00 3.69
3992 5828 3.129988 ACAATTTTGATGCTAGCAGGAGC 59.870 43.478 23.89 12.42 43.16 4.70
4000 5836 2.338140 GCTAGCAGGAGCAAAAACAC 57.662 50.000 10.63 0.00 45.49 3.32
4008 5844 1.782028 GAGCAAAAACACCCGCTCGT 61.782 55.000 0.00 0.00 41.26 4.18
4015 5851 2.357517 CACCCGCTCGTCTTGCTT 60.358 61.111 0.00 0.00 0.00 3.91
4016 5852 1.080093 CACCCGCTCGTCTTGCTTA 60.080 57.895 0.00 0.00 0.00 3.09
4071 5907 1.070309 GCGCTCTGACACTTGAACTTG 60.070 52.381 0.00 0.00 0.00 3.16
4777 6613 0.033109 GGCACCCCTATTTCCTGCTT 60.033 55.000 0.00 0.00 0.00 3.91
4829 6665 1.457346 GCTGCAGCTCACCAAATAGT 58.543 50.000 31.33 0.00 38.21 2.12
4830 6666 2.632377 GCTGCAGCTCACCAAATAGTA 58.368 47.619 31.33 0.00 38.21 1.82
4847 6683 9.725019 CCAAATAGTAATTGATATGTCTGGCTA 57.275 33.333 0.00 0.00 0.00 3.93
4881 6717 4.562757 GCGATCAAACCCCTGCATATAGTA 60.563 45.833 0.00 0.00 0.00 1.82
4884 6720 5.499004 TCAAACCCCTGCATATAGTATCC 57.501 43.478 0.00 0.00 0.00 2.59
4912 6748 5.075493 AGATGTCCATCCCATAAATTCTGC 58.925 41.667 3.70 0.00 38.58 4.26
4918 6754 4.217510 CATCCCATAAATTCTGCCCTGAA 58.782 43.478 0.00 0.00 0.00 3.02
5033 6871 7.538678 GGTGTCAATCAATCAGTACATTGTTTC 59.461 37.037 0.00 0.00 35.56 2.78
5067 6905 2.885676 GACAGCGTGTGTGGTGCAG 61.886 63.158 0.00 0.00 40.56 4.41
5116 6954 0.244721 CTGCTGATCGAGTGTGGACA 59.755 55.000 0.00 0.00 0.00 4.02
5217 7055 3.254024 AATGGAGGCCGTGCTCGTT 62.254 57.895 7.47 0.00 35.01 3.85
5238 7076 2.159184 TCTGAAGCTCTATTGACTGGCG 60.159 50.000 0.00 0.00 0.00 5.69
5282 7120 6.208007 TGTCCTCGAAAGACTGTTTACTCATA 59.792 38.462 14.41 0.00 35.21 2.15
5413 7251 0.997196 GTGGCACGTACCTCGAATTC 59.003 55.000 6.34 0.00 42.86 2.17
5497 7335 6.256539 TCGCTCAAAGCTGAATTAGTAATGAG 59.743 38.462 0.00 0.00 39.60 2.90
5498 7336 6.197981 GCTCAAAGCTGAATTAGTAATGAGC 58.802 40.000 15.05 15.05 43.22 4.26
5502 7340 3.134804 AGCTGAATTAGTAATGAGCCGGT 59.865 43.478 17.63 0.00 30.96 5.28
5680 7518 6.154203 TGTCAGCATGGTTAATCAAAACAA 57.846 33.333 0.00 0.00 38.58 2.83
5681 7519 6.215121 TGTCAGCATGGTTAATCAAAACAAG 58.785 36.000 0.00 0.00 38.58 3.16
5686 7524 5.333263 GCATGGTTAATCAAAACAAGTGCAC 60.333 40.000 9.40 9.40 38.58 4.57
5719 7557 3.346315 TGGAAAGTCACATGCACCTATG 58.654 45.455 0.00 0.00 0.00 2.23
5745 7583 4.021104 TCCTTGTGTCCAGAGTATGAGTTG 60.021 45.833 0.00 0.00 0.00 3.16
5753 7591 4.841813 TCCAGAGTATGAGTTGGGTTGTAA 59.158 41.667 0.00 0.00 0.00 2.41
5805 7643 4.260170 CATCTTCCACTTTCTTCTCCCAG 58.740 47.826 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.152154 TCAGCATTCCGGATTATATAGTTCGA 59.848 38.462 4.15 0.00 0.00 3.71
1 2 6.330278 TCAGCATTCCGGATTATATAGTTCG 58.670 40.000 4.15 0.00 0.00 3.95
4 5 7.187824 ACATCAGCATTCCGGATTATATAGT 57.812 36.000 4.15 0.00 0.00 2.12
5 6 8.633561 TCTACATCAGCATTCCGGATTATATAG 58.366 37.037 4.15 0.00 0.00 1.31
6 7 8.533569 TCTACATCAGCATTCCGGATTATATA 57.466 34.615 4.15 0.00 0.00 0.86
7 8 7.423844 TCTACATCAGCATTCCGGATTATAT 57.576 36.000 4.15 0.00 0.00 0.86
8 9 6.850752 TCTACATCAGCATTCCGGATTATA 57.149 37.500 4.15 0.00 0.00 0.98
9 10 5.745312 TCTACATCAGCATTCCGGATTAT 57.255 39.130 4.15 0.00 0.00 1.28
10 11 5.337571 GGATCTACATCAGCATTCCGGATTA 60.338 44.000 4.15 0.00 0.00 1.75
11 12 4.564406 GGATCTACATCAGCATTCCGGATT 60.564 45.833 4.15 0.00 0.00 3.01
12 13 3.055530 GGATCTACATCAGCATTCCGGAT 60.056 47.826 4.15 0.00 0.00 4.18
13 14 2.300152 GGATCTACATCAGCATTCCGGA 59.700 50.000 0.00 0.00 0.00 5.14
14 15 2.301296 AGGATCTACATCAGCATTCCGG 59.699 50.000 0.00 0.00 0.00 5.14
15 16 3.324117 CAGGATCTACATCAGCATTCCG 58.676 50.000 0.00 0.00 0.00 4.30
16 17 3.326006 TCCAGGATCTACATCAGCATTCC 59.674 47.826 0.00 0.00 0.00 3.01
17 18 4.040217 AGTCCAGGATCTACATCAGCATTC 59.960 45.833 0.00 0.00 0.00 2.67
18 19 3.972638 AGTCCAGGATCTACATCAGCATT 59.027 43.478 0.00 0.00 0.00 3.56
19 20 3.585360 AGTCCAGGATCTACATCAGCAT 58.415 45.455 0.00 0.00 0.00 3.79
20 21 3.037851 AGTCCAGGATCTACATCAGCA 57.962 47.619 0.00 0.00 0.00 4.41
21 22 3.257127 GGTAGTCCAGGATCTACATCAGC 59.743 52.174 21.40 8.15 38.46 4.26
22 23 4.735369 AGGTAGTCCAGGATCTACATCAG 58.265 47.826 21.40 0.00 38.46 2.90
23 24 4.816048 AGGTAGTCCAGGATCTACATCA 57.184 45.455 21.40 0.00 38.46 3.07
24 25 6.015265 GGTAAAGGTAGTCCAGGATCTACATC 60.015 46.154 21.40 11.35 38.46 3.06
25 26 5.839606 GGTAAAGGTAGTCCAGGATCTACAT 59.160 44.000 21.40 15.85 38.46 2.29
26 27 5.206587 GGTAAAGGTAGTCCAGGATCTACA 58.793 45.833 21.40 6.99 38.46 2.74
27 28 4.277921 CGGTAAAGGTAGTCCAGGATCTAC 59.722 50.000 15.70 15.70 36.70 2.59
28 29 4.166725 TCGGTAAAGGTAGTCCAGGATCTA 59.833 45.833 0.00 0.00 35.89 1.98
29 30 3.053095 TCGGTAAAGGTAGTCCAGGATCT 60.053 47.826 0.00 0.00 35.89 2.75
30 31 3.294214 TCGGTAAAGGTAGTCCAGGATC 58.706 50.000 0.00 0.00 35.89 3.36
31 32 3.053095 TCTCGGTAAAGGTAGTCCAGGAT 60.053 47.826 0.00 0.00 35.89 3.24
32 33 2.309755 TCTCGGTAAAGGTAGTCCAGGA 59.690 50.000 0.00 0.00 35.89 3.86
33 34 2.688958 CTCTCGGTAAAGGTAGTCCAGG 59.311 54.545 0.00 0.00 35.89 4.45
34 35 3.618351 TCTCTCGGTAAAGGTAGTCCAG 58.382 50.000 0.00 0.00 35.89 3.86
35 36 3.265221 TCTCTCTCGGTAAAGGTAGTCCA 59.735 47.826 0.00 0.00 35.89 4.02
36 37 3.878699 CTCTCTCTCGGTAAAGGTAGTCC 59.121 52.174 0.00 0.00 0.00 3.85
37 38 4.768583 TCTCTCTCTCGGTAAAGGTAGTC 58.231 47.826 0.00 0.00 0.00 2.59
38 39 4.470664 TCTCTCTCTCTCGGTAAAGGTAGT 59.529 45.833 0.00 0.00 0.00 2.73
39 40 5.026038 TCTCTCTCTCTCGGTAAAGGTAG 57.974 47.826 0.00 0.00 0.00 3.18
40 41 4.715792 TCTCTCTCTCTCTCGGTAAAGGTA 59.284 45.833 0.00 0.00 0.00 3.08
41 42 3.520317 TCTCTCTCTCTCTCGGTAAAGGT 59.480 47.826 0.00 0.00 0.00 3.50
42 43 4.127171 CTCTCTCTCTCTCTCGGTAAAGG 58.873 52.174 0.00 0.00 0.00 3.11
43 44 5.018539 TCTCTCTCTCTCTCTCGGTAAAG 57.981 47.826 0.00 0.00 0.00 1.85
44 45 4.712829 TCTCTCTCTCTCTCTCTCGGTAAA 59.287 45.833 0.00 0.00 0.00 2.01
45 46 4.283337 TCTCTCTCTCTCTCTCTCGGTAA 58.717 47.826 0.00 0.00 0.00 2.85
46 47 3.889538 CTCTCTCTCTCTCTCTCTCGGTA 59.110 52.174 0.00 0.00 0.00 4.02
47 48 2.695666 CTCTCTCTCTCTCTCTCTCGGT 59.304 54.545 0.00 0.00 0.00 4.69
48 49 2.959030 TCTCTCTCTCTCTCTCTCTCGG 59.041 54.545 0.00 0.00 0.00 4.63
49 50 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
50 51 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
51 52 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
52 53 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
53 54 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
54 55 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
55 56 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
56 57 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
57 58 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
58 59 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
59 60 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
60 61 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
61 62 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
62 63 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
63 64 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
64 65 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
65 66 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
66 67 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
67 68 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
68 69 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
69 70 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
70 71 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
71 72 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
72 73 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
73 74 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
74 75 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
75 76 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
76 77 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
77 78 4.271807 TCCTCTCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
78 79 4.407296 ACTTCCTCTCTCTCTCTCTCTCTC 59.593 50.000 0.00 0.00 0.00 3.20
79 80 4.366267 ACTTCCTCTCTCTCTCTCTCTCT 58.634 47.826 0.00 0.00 0.00 3.10
80 81 4.162320 TGACTTCCTCTCTCTCTCTCTCTC 59.838 50.000 0.00 0.00 0.00 3.20
81 82 4.104086 TGACTTCCTCTCTCTCTCTCTCT 58.896 47.826 0.00 0.00 0.00 3.10
82 83 4.446371 CTGACTTCCTCTCTCTCTCTCTC 58.554 52.174 0.00 0.00 0.00 3.20
83 84 3.200825 CCTGACTTCCTCTCTCTCTCTCT 59.799 52.174 0.00 0.00 0.00 3.10
84 85 3.545703 CCTGACTTCCTCTCTCTCTCTC 58.454 54.545 0.00 0.00 0.00 3.20
85 86 2.357154 GCCTGACTTCCTCTCTCTCTCT 60.357 54.545 0.00 0.00 0.00 3.10
86 87 2.024414 GCCTGACTTCCTCTCTCTCTC 58.976 57.143 0.00 0.00 0.00 3.20
87 88 1.640670 AGCCTGACTTCCTCTCTCTCT 59.359 52.381 0.00 0.00 0.00 3.10
88 89 2.024414 GAGCCTGACTTCCTCTCTCTC 58.976 57.143 0.00 0.00 0.00 3.20
89 90 1.357420 TGAGCCTGACTTCCTCTCTCT 59.643 52.381 0.00 0.00 0.00 3.10
90 91 1.846007 TGAGCCTGACTTCCTCTCTC 58.154 55.000 0.00 0.00 0.00 3.20
91 92 2.548464 ATGAGCCTGACTTCCTCTCT 57.452 50.000 0.00 0.00 0.00 3.10
92 93 2.499289 TGAATGAGCCTGACTTCCTCTC 59.501 50.000 0.00 0.00 0.00 3.20
93 94 2.544721 TGAATGAGCCTGACTTCCTCT 58.455 47.619 0.00 0.00 0.00 3.69
94 95 3.204526 CATGAATGAGCCTGACTTCCTC 58.795 50.000 0.00 0.00 0.00 3.71
95 96 2.092538 CCATGAATGAGCCTGACTTCCT 60.093 50.000 0.00 0.00 0.00 3.36
96 97 2.092753 TCCATGAATGAGCCTGACTTCC 60.093 50.000 0.00 0.00 0.00 3.46
97 98 2.941720 GTCCATGAATGAGCCTGACTTC 59.058 50.000 0.00 0.00 0.00 3.01
98 99 2.306805 TGTCCATGAATGAGCCTGACTT 59.693 45.455 0.00 0.00 0.00 3.01
99 100 1.911357 TGTCCATGAATGAGCCTGACT 59.089 47.619 0.00 0.00 0.00 3.41
100 101 2.408271 TGTCCATGAATGAGCCTGAC 57.592 50.000 0.00 0.00 0.00 3.51
107 108 6.038997 TGCATCAAATTTGTCCATGAATGA 57.961 33.333 17.47 0.00 0.00 2.57
153 154 5.046448 TGCTTTGGAATTTCATAGTGCCATT 60.046 36.000 6.13 0.00 0.00 3.16
158 159 5.063180 TGCTGCTTTGGAATTTCATAGTG 57.937 39.130 6.13 1.84 0.00 2.74
164 165 2.758009 TGCTTGCTGCTTTGGAATTTC 58.242 42.857 0.00 0.00 43.37 2.17
166 167 2.914695 TTGCTTGCTGCTTTGGAATT 57.085 40.000 0.00 0.00 43.37 2.17
171 172 2.124903 CTGTCTTTGCTTGCTGCTTTG 58.875 47.619 0.00 0.00 43.37 2.77
173 174 0.672342 CCTGTCTTTGCTTGCTGCTT 59.328 50.000 0.00 0.00 43.37 3.91
182 183 5.186996 TGTTCTTCATTTCCTGTCTTTGC 57.813 39.130 0.00 0.00 0.00 3.68
184 185 5.360714 TGCTTGTTCTTCATTTCCTGTCTTT 59.639 36.000 0.00 0.00 0.00 2.52
205 206 0.538516 ACGAGAGAGGTGTGTCTGCT 60.539 55.000 0.00 0.00 0.00 4.24
212 213 3.536956 TTTTGACAACGAGAGAGGTGT 57.463 42.857 0.00 0.00 0.00 4.16
221 223 6.280643 TCTCTGAAGAAGATTTTGACAACGA 58.719 36.000 0.00 0.00 33.29 3.85
261 263 8.502387 CACGAAGAATCTCTGAAGAAGAATTTT 58.498 33.333 0.00 0.00 34.49 1.82
262 264 7.118971 CCACGAAGAATCTCTGAAGAAGAATTT 59.881 37.037 0.00 0.00 34.49 1.82
263 265 6.593382 CCACGAAGAATCTCTGAAGAAGAATT 59.407 38.462 0.00 0.00 34.49 2.17
264 266 6.105333 CCACGAAGAATCTCTGAAGAAGAAT 58.895 40.000 0.00 0.00 34.49 2.40
265 267 5.473931 CCACGAAGAATCTCTGAAGAAGAA 58.526 41.667 0.00 0.00 34.49 2.52
266 268 4.081972 CCCACGAAGAATCTCTGAAGAAGA 60.082 45.833 0.00 0.00 34.49 2.87
278 280 1.021390 CGCAGAAGCCCACGAAGAAT 61.021 55.000 0.00 0.00 37.52 2.40
295 297 2.720758 CCGTGCTATGCTATCGCGC 61.721 63.158 0.00 0.00 39.65 6.86
298 300 1.284982 GGCACCGTGCTATGCTATCG 61.285 60.000 22.41 0.00 44.28 2.92
332 334 2.478894 TCTTCACGTTTCAGAAATCCGC 59.521 45.455 0.00 0.00 0.00 5.54
404 406 0.464735 CTGTCTCGAGGGAGGACGAT 60.465 60.000 13.56 0.00 40.85 3.73
596 602 7.946207 AGAGGTTTCTCAAGAAAAGAAAATCC 58.054 34.615 6.76 3.05 44.58 3.01
603 609 5.742446 CGTGAAGAGGTTTCTCAAGAAAAG 58.258 41.667 6.76 0.00 44.58 2.27
608 614 1.457303 CGCGTGAAGAGGTTTCTCAAG 59.543 52.381 0.00 0.00 42.34 3.02
631 638 6.916360 TTCCTCCAAACTTATTTGCTGAAT 57.084 33.333 0.00 0.00 43.38 2.57
636 643 7.870445 TGTAACAATTCCTCCAAACTTATTTGC 59.130 33.333 0.00 0.00 43.38 3.68
641 648 8.528044 ACTTTGTAACAATTCCTCCAAACTTA 57.472 30.769 0.00 0.00 0.00 2.24
647 654 6.016360 CACATGACTTTGTAACAATTCCTCCA 60.016 38.462 0.00 0.00 0.00 3.86
657 664 6.131544 AGTTTCACCACATGACTTTGTAAC 57.868 37.500 0.00 1.75 36.92 2.50
671 678 3.561143 ACAATTGTGGCTAGTTTCACCA 58.439 40.909 11.07 0.00 33.29 4.17
712 719 5.922544 GCAGACAGTTTAGCAATGTTTTCAT 59.077 36.000 0.00 0.00 43.05 2.57
720 727 5.772825 TTTGAAGCAGACAGTTTAGCAAT 57.227 34.783 0.00 0.00 0.00 3.56
773 781 2.802816 CGATTCTAGCCTTTCGATTGGG 59.197 50.000 6.38 1.21 33.59 4.12
785 793 2.340443 CCCGAGGCCGATTCTAGC 59.660 66.667 0.00 0.00 38.22 3.42
838 2398 2.694829 ATAACGATGGGCCGAGCGAC 62.695 60.000 32.15 0.00 0.00 5.19
1925 3501 3.492421 TCAGATTCGCCATTTTTGCTC 57.508 42.857 0.00 0.00 0.00 4.26
1994 3574 1.073897 GCACTCCTTGGCTCCAACT 59.926 57.895 0.00 0.00 0.00 3.16
2111 3691 2.809601 CCGCCCTTGACGAACTCG 60.810 66.667 0.00 0.00 46.33 4.18
2891 4474 3.134623 TGTCGCCATGGAGTCAGAATTAT 59.865 43.478 18.40 0.00 0.00 1.28
2892 4475 2.499693 TGTCGCCATGGAGTCAGAATTA 59.500 45.455 18.40 0.00 0.00 1.40
2894 4477 0.904649 TGTCGCCATGGAGTCAGAAT 59.095 50.000 18.40 0.00 0.00 2.40
2921 4504 2.190161 GTTCAACTGGTTTTTCGGTGC 58.810 47.619 0.00 0.00 0.00 5.01
2925 4508 3.095738 GACGTGTTCAACTGGTTTTTCG 58.904 45.455 0.00 0.00 0.00 3.46
2929 4512 1.011333 CCGACGTGTTCAACTGGTTT 58.989 50.000 0.00 0.00 0.00 3.27
2935 4518 2.095384 GGTTTTCCGACGTGTTCAAC 57.905 50.000 0.00 0.00 0.00 3.18
2958 4541 1.905637 AAGTAGGGCTTTGGTTTCGG 58.094 50.000 0.00 0.00 32.57 4.30
2964 4547 4.402155 TGATTGCATAAAGTAGGGCTTTGG 59.598 41.667 0.00 0.00 46.07 3.28
2974 4557 6.677920 GCTTGGTAACGATGATTGCATAAAGT 60.678 38.462 0.00 0.00 42.51 2.66
2978 4561 4.195416 TGCTTGGTAACGATGATTGCATA 58.805 39.130 0.00 0.00 42.51 3.14
3098 4681 4.630644 AACCCATGATTCGCTAGATCAT 57.369 40.909 0.00 0.00 35.61 2.45
3099 4682 4.380531 GAAACCCATGATTCGCTAGATCA 58.619 43.478 0.00 0.00 0.00 2.92
3141 4725 0.251386 TTGTGCTCCTCTCCTCGTCT 60.251 55.000 0.00 0.00 0.00 4.18
3176 4760 6.481644 GTGCAAAGTCCCTAGAATATCTTGAG 59.518 42.308 0.00 0.00 0.00 3.02
3197 4781 3.422303 GCGAGGACAATGCGTGCA 61.422 61.111 0.00 0.00 38.70 4.57
3296 4880 2.729882 GCACTTTCACGTCGTCTATTGT 59.270 45.455 0.00 0.00 0.00 2.71
3301 4885 1.202371 TGAAGCACTTTCACGTCGTCT 60.202 47.619 0.00 0.00 40.82 4.18
3321 4925 2.193536 GCACCTGCCGACACCTTTT 61.194 57.895 0.00 0.00 34.31 2.27
3334 4938 4.379243 CTCCGGTTCTGCGCACCT 62.379 66.667 5.66 0.00 31.32 4.00
3340 4944 1.078759 CATGTCGTCTCCGGTTCTGC 61.079 60.000 0.00 0.00 33.95 4.26
3342 4946 0.966920 AACATGTCGTCTCCGGTTCT 59.033 50.000 0.00 0.00 33.95 3.01
3396 5006 1.423921 CCTGTGGTCACTTAGGGGTTT 59.576 52.381 2.66 0.00 0.00 3.27
3481 5111 7.094631 TCTATCAGCGTGCTTTAGTCTAAAAA 58.905 34.615 6.51 0.00 0.00 1.94
3503 5133 0.037326 CGGTGCCTCTTTGTGCTCTA 60.037 55.000 0.00 0.00 0.00 2.43
3504 5134 1.302033 CGGTGCCTCTTTGTGCTCT 60.302 57.895 0.00 0.00 0.00 4.09
3505 5135 2.328099 CCGGTGCCTCTTTGTGCTC 61.328 63.158 0.00 0.00 0.00 4.26
3506 5136 2.281761 CCGGTGCCTCTTTGTGCT 60.282 61.111 0.00 0.00 0.00 4.40
3507 5137 1.856265 CTTCCGGTGCCTCTTTGTGC 61.856 60.000 0.00 0.00 0.00 4.57
3508 5138 0.250295 TCTTCCGGTGCCTCTTTGTG 60.250 55.000 0.00 0.00 0.00 3.33
3559 5298 8.730680 ACACACATACCTCATCAAAATTCTAAC 58.269 33.333 0.00 0.00 0.00 2.34
3561 5300 8.862325 AACACACATACCTCATCAAAATTCTA 57.138 30.769 0.00 0.00 0.00 2.10
3593 5337 3.766545 TCCTCAAACCAATCCTTCCAAG 58.233 45.455 0.00 0.00 0.00 3.61
3606 5350 8.655651 TTTTCAACCATGTATTTTCCTCAAAC 57.344 30.769 0.00 0.00 0.00 2.93
3610 5354 8.197439 CCCTATTTTCAACCATGTATTTTCCTC 58.803 37.037 0.00 0.00 0.00 3.71
3667 5415 8.798859 TTTTCTTTCTATGGAGAATCTTCTGG 57.201 34.615 0.00 0.00 41.40 3.86
3844 5680 9.985318 GCTAGCATGAGATTTATTCAATGTATC 57.015 33.333 10.63 0.00 0.00 2.24
3845 5681 9.511272 TGCTAGCATGAGATTTATTCAATGTAT 57.489 29.630 14.93 0.00 0.00 2.29
3846 5682 8.907222 TGCTAGCATGAGATTTATTCAATGTA 57.093 30.769 14.93 0.00 0.00 2.29
3847 5683 7.521748 GCTGCTAGCATGAGATTTATTCAATGT 60.522 37.037 19.72 0.00 41.89 2.71
3848 5684 6.802348 GCTGCTAGCATGAGATTTATTCAATG 59.198 38.462 19.72 0.86 41.89 2.82
3849 5685 6.910995 GCTGCTAGCATGAGATTTATTCAAT 58.089 36.000 19.72 0.00 41.89 2.57
3850 5686 6.309712 GCTGCTAGCATGAGATTTATTCAA 57.690 37.500 19.72 0.00 41.89 2.69
3851 5687 5.936686 GCTGCTAGCATGAGATTTATTCA 57.063 39.130 19.72 0.00 41.89 2.57
3865 5701 1.788886 GTGTTTTGCTTTGCTGCTAGC 59.211 47.619 8.10 8.10 42.82 3.42
3866 5702 2.397549 GGTGTTTTGCTTTGCTGCTAG 58.602 47.619 0.00 0.00 0.00 3.42
3867 5703 1.068434 GGGTGTTTTGCTTTGCTGCTA 59.932 47.619 0.00 0.00 0.00 3.49
3868 5704 0.179076 GGGTGTTTTGCTTTGCTGCT 60.179 50.000 0.00 0.00 0.00 4.24
3869 5705 1.489881 CGGGTGTTTTGCTTTGCTGC 61.490 55.000 0.00 0.00 0.00 5.25
3870 5706 1.489881 GCGGGTGTTTTGCTTTGCTG 61.490 55.000 0.00 0.00 0.00 4.41
3871 5707 1.227234 GCGGGTGTTTTGCTTTGCT 60.227 52.632 0.00 0.00 0.00 3.91
3872 5708 1.215014 GAGCGGGTGTTTTGCTTTGC 61.215 55.000 0.00 0.00 39.49 3.68
3873 5709 0.934436 CGAGCGGGTGTTTTGCTTTG 60.934 55.000 0.00 0.00 39.49 2.77
3874 5710 1.098712 TCGAGCGGGTGTTTTGCTTT 61.099 50.000 0.00 0.00 39.49 3.51
3875 5711 1.525077 TCGAGCGGGTGTTTTGCTT 60.525 52.632 0.00 0.00 39.49 3.91
3876 5712 2.110213 TCGAGCGGGTGTTTTGCT 59.890 55.556 0.00 0.00 42.73 3.91
3877 5713 2.251371 GTCGAGCGGGTGTTTTGC 59.749 61.111 0.00 0.00 0.00 3.68
3878 5714 2.549282 CGTCGAGCGGGTGTTTTG 59.451 61.111 0.00 0.00 36.85 2.44
3879 5715 3.343421 GCGTCGAGCGGGTGTTTT 61.343 61.111 0.00 0.00 41.69 2.43
3896 5732 1.101049 AGTTTATCGGCCATTGCGGG 61.101 55.000 2.24 0.00 38.29 6.13
3897 5733 0.307760 GAGTTTATCGGCCATTGCGG 59.692 55.000 2.24 0.00 38.85 5.69
3898 5734 0.307760 GGAGTTTATCGGCCATTGCG 59.692 55.000 2.24 0.00 38.85 4.85
3899 5735 1.388547 TGGAGTTTATCGGCCATTGC 58.611 50.000 2.24 0.00 0.00 3.56
3900 5736 3.730662 CGTTTGGAGTTTATCGGCCATTG 60.731 47.826 2.24 0.00 0.00 2.82
3901 5737 2.422127 CGTTTGGAGTTTATCGGCCATT 59.578 45.455 2.24 0.00 0.00 3.16
3902 5738 2.014128 CGTTTGGAGTTTATCGGCCAT 58.986 47.619 2.24 0.00 0.00 4.40
3903 5739 1.444836 CGTTTGGAGTTTATCGGCCA 58.555 50.000 2.24 0.00 0.00 5.36
3904 5740 0.098200 GCGTTTGGAGTTTATCGGCC 59.902 55.000 0.00 0.00 0.00 6.13
3905 5741 0.247537 CGCGTTTGGAGTTTATCGGC 60.248 55.000 0.00 0.00 0.00 5.54
3906 5742 0.247537 GCGCGTTTGGAGTTTATCGG 60.248 55.000 8.43 0.00 0.00 4.18
3907 5743 0.583083 CGCGCGTTTGGAGTTTATCG 60.583 55.000 24.19 0.00 0.00 2.92
3908 5744 0.856080 GCGCGCGTTTGGAGTTTATC 60.856 55.000 32.35 5.47 0.00 1.75
3909 5745 1.133869 GCGCGCGTTTGGAGTTTAT 59.866 52.632 32.35 0.00 0.00 1.40
3910 5746 2.552268 GCGCGCGTTTGGAGTTTA 59.448 55.556 32.35 0.00 0.00 2.01
3911 5747 4.659874 CGCGCGCGTTTGGAGTTT 62.660 61.111 42.49 0.00 34.35 2.66
3922 5758 4.152625 AAATGTCAGAGCGCGCGC 62.153 61.111 45.10 45.10 42.33 6.86
3923 5759 2.226712 TTCAAATGTCAGAGCGCGCG 62.227 55.000 28.44 28.44 0.00 6.86
3924 5760 0.790866 GTTCAAATGTCAGAGCGCGC 60.791 55.000 26.66 26.66 0.00 6.86
3925 5761 0.792640 AGTTCAAATGTCAGAGCGCG 59.207 50.000 0.00 0.00 0.00 6.86
3926 5762 2.031682 ACAAGTTCAAATGTCAGAGCGC 60.032 45.455 0.00 0.00 0.00 5.92
3927 5763 3.885484 ACAAGTTCAAATGTCAGAGCG 57.115 42.857 0.00 0.00 0.00 5.03
3928 5764 4.036734 TCCAACAAGTTCAAATGTCAGAGC 59.963 41.667 0.00 0.00 0.00 4.09
3929 5765 5.756195 TCCAACAAGTTCAAATGTCAGAG 57.244 39.130 0.00 0.00 0.00 3.35
3930 5766 5.507817 GCATCCAACAAGTTCAAATGTCAGA 60.508 40.000 0.00 0.00 0.00 3.27
3931 5767 4.682860 GCATCCAACAAGTTCAAATGTCAG 59.317 41.667 0.00 0.00 0.00 3.51
3932 5768 4.341806 AGCATCCAACAAGTTCAAATGTCA 59.658 37.500 0.00 0.00 0.00 3.58
3933 5769 4.874970 AGCATCCAACAAGTTCAAATGTC 58.125 39.130 0.00 0.00 0.00 3.06
3934 5770 4.942761 AGCATCCAACAAGTTCAAATGT 57.057 36.364 0.00 0.00 0.00 2.71
3935 5771 6.925165 ACTTTAGCATCCAACAAGTTCAAATG 59.075 34.615 0.00 0.00 0.00 2.32
3936 5772 6.925165 CACTTTAGCATCCAACAAGTTCAAAT 59.075 34.615 0.00 0.00 0.00 2.32
3937 5773 6.127479 ACACTTTAGCATCCAACAAGTTCAAA 60.127 34.615 0.00 0.00 0.00 2.69
3938 5774 5.359576 ACACTTTAGCATCCAACAAGTTCAA 59.640 36.000 0.00 0.00 0.00 2.69
3939 5775 4.887071 ACACTTTAGCATCCAACAAGTTCA 59.113 37.500 0.00 0.00 0.00 3.18
3940 5776 5.438761 ACACTTTAGCATCCAACAAGTTC 57.561 39.130 0.00 0.00 0.00 3.01
3941 5777 5.825679 TGTACACTTTAGCATCCAACAAGTT 59.174 36.000 0.00 0.00 0.00 2.66
3942 5778 5.373222 TGTACACTTTAGCATCCAACAAGT 58.627 37.500 0.00 0.00 0.00 3.16
3943 5779 5.940192 TGTACACTTTAGCATCCAACAAG 57.060 39.130 0.00 0.00 0.00 3.16
3950 5786 6.494893 TTGTCCAATGTACACTTTAGCATC 57.505 37.500 0.00 0.00 0.00 3.91
3954 5790 9.912634 ATCAAAATTGTCCAATGTACACTTTAG 57.087 29.630 0.00 0.00 31.76 1.85
3981 5817 1.068264 GGTGTTTTTGCTCCTGCTAGC 60.068 52.381 8.10 8.10 43.08 3.42
3982 5818 1.541588 GGGTGTTTTTGCTCCTGCTAG 59.458 52.381 0.00 0.00 40.48 3.42
3983 5819 1.616159 GGGTGTTTTTGCTCCTGCTA 58.384 50.000 0.00 0.00 40.48 3.49
3984 5820 1.455383 CGGGTGTTTTTGCTCCTGCT 61.455 55.000 0.00 0.00 40.48 4.24
3985 5821 1.007387 CGGGTGTTTTTGCTCCTGC 60.007 57.895 0.00 0.00 40.20 4.85
3986 5822 1.007387 GCGGGTGTTTTTGCTCCTG 60.007 57.895 0.00 0.00 0.00 3.86
3987 5823 1.152756 AGCGGGTGTTTTTGCTCCT 60.153 52.632 0.00 0.00 30.37 3.69
3988 5824 1.285950 GAGCGGGTGTTTTTGCTCC 59.714 57.895 1.75 0.00 46.21 4.70
3989 5825 4.944249 GAGCGGGTGTTTTTGCTC 57.056 55.556 0.00 0.00 45.95 4.26
3990 5826 1.782028 GACGAGCGGGTGTTTTTGCT 61.782 55.000 0.00 0.00 41.11 3.91
3991 5827 1.370051 GACGAGCGGGTGTTTTTGC 60.370 57.895 0.00 0.00 0.00 3.68
3992 5828 0.661020 AAGACGAGCGGGTGTTTTTG 59.339 50.000 0.00 0.00 0.00 2.44
3993 5829 0.661020 CAAGACGAGCGGGTGTTTTT 59.339 50.000 0.00 0.00 0.00 1.94
3994 5830 1.782028 GCAAGACGAGCGGGTGTTTT 61.782 55.000 0.00 0.00 0.00 2.43
3995 5831 2.251642 GCAAGACGAGCGGGTGTTT 61.252 57.895 0.00 0.00 0.00 2.83
3996 5832 2.660258 AAGCAAGACGAGCGGGTGTT 62.660 55.000 0.00 0.00 37.01 3.32
3997 5833 1.812686 TAAGCAAGACGAGCGGGTGT 61.813 55.000 0.00 0.00 37.01 4.16
3998 5834 0.460284 ATAAGCAAGACGAGCGGGTG 60.460 55.000 0.00 0.00 37.01 4.61
3999 5835 1.108776 TATAAGCAAGACGAGCGGGT 58.891 50.000 0.00 0.00 37.01 5.28
4000 5836 1.488527 GTATAAGCAAGACGAGCGGG 58.511 55.000 0.00 0.00 37.01 6.13
4008 5844 0.108089 TTGCCGGCGTATAAGCAAGA 60.108 50.000 23.90 0.00 40.13 3.02
4522 6358 3.157252 ATGAGCACGATCCCGGCT 61.157 61.111 0.00 0.49 42.18 5.52
4828 6664 9.929180 TTCTATGTAGCCAGACATATCAATTAC 57.071 33.333 4.65 0.00 40.60 1.89
4829 6665 9.929180 GTTCTATGTAGCCAGACATATCAATTA 57.071 33.333 4.65 0.00 40.60 1.40
4830 6666 8.432013 TGTTCTATGTAGCCAGACATATCAATT 58.568 33.333 4.65 0.00 40.60 2.32
4847 6683 3.689649 GGGTTTGATCGCTTGTTCTATGT 59.310 43.478 0.00 0.00 0.00 2.29
4851 6687 1.073923 AGGGGTTTGATCGCTTGTTCT 59.926 47.619 0.00 0.00 0.00 3.01
4881 6717 8.642964 TTTATGGGATGGACATCTATATGGAT 57.357 34.615 11.67 0.00 37.43 3.41
4912 6748 2.502947 TCACTCATGTCAGGATTCAGGG 59.497 50.000 0.00 0.00 0.00 4.45
4918 6754 1.135915 GCGTCTCACTCATGTCAGGAT 59.864 52.381 0.00 0.00 0.00 3.24
5033 6871 1.854743 CTGTCCATATGAACTCGCACG 59.145 52.381 3.65 0.00 0.00 5.34
5067 6905 3.118592 AGTTAGCCCAGCATCTGTAACTC 60.119 47.826 0.00 0.00 30.38 3.01
5116 6954 5.485708 AGCAGAAGTAGGATTTCTTGGTAGT 59.514 40.000 0.00 0.00 32.75 2.73
5217 7055 2.159184 CGCCAGTCAATAGAGCTTCAGA 60.159 50.000 0.00 0.00 0.00 3.27
5238 7076 1.273327 CAAAACCTGATGTTCCTGCCC 59.727 52.381 0.00 0.00 35.67 5.36
5282 7120 3.530910 CCGGCCAGGTGACGAAGTT 62.531 63.158 2.24 0.00 36.29 2.66
5350 7188 6.361433 AGAGATAAGAAGGAGATCGACAAGA 58.639 40.000 0.00 0.00 0.00 3.02
5405 7243 1.993370 GAACTGGTCACGGAATTCGAG 59.007 52.381 0.00 0.00 42.43 4.04
5484 7322 4.067972 TCCACCGGCTCATTACTAATTC 57.932 45.455 0.00 0.00 0.00 2.17
5497 7335 1.068816 GTACACAAATGTTCCACCGGC 60.069 52.381 0.00 0.00 40.48 6.13
5498 7336 1.538075 GGTACACAAATGTTCCACCGG 59.462 52.381 0.00 0.00 43.87 5.28
5502 7340 2.642154 ACCGGTACACAAATGTTCCA 57.358 45.000 4.49 0.00 44.48 3.53
5680 7518 2.890311 TCCAATTTGGAATTCGTGCACT 59.110 40.909 15.83 0.00 45.00 4.40
5681 7519 3.296322 TCCAATTTGGAATTCGTGCAC 57.704 42.857 15.83 6.82 45.00 4.57
5719 7557 5.361285 ACTCATACTCTGGACACAAGGATAC 59.639 44.000 0.00 0.00 0.00 2.24
5745 7583 6.872628 AAAACAGTAAGTAGCTTACAACCC 57.127 37.500 17.79 0.00 46.01 4.11
5753 7591 5.243207 ACGCCAATAAAACAGTAAGTAGCT 58.757 37.500 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.