Multiple sequence alignment - TraesCS1D01G300200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G300200 chr1D 100.000 3915 0 0 894 4808 398456265 398460179 0.000000e+00 7230
1 TraesCS1D01G300200 chr1D 100.000 366 0 0 1 366 398455372 398455737 0.000000e+00 676
2 TraesCS1D01G300200 chr1A 90.314 1817 126 24 2993 4788 495446377 495448164 0.000000e+00 2335
3 TraesCS1D01G300200 chr1A 92.786 1206 59 11 894 2094 495444511 495445693 0.000000e+00 1720
4 TraesCS1D01G300200 chr1A 86.253 371 18 19 11 366 495444079 495444431 5.880000e-99 372
5 TraesCS1D01G300200 chr1A 91.943 211 13 2 2430 2637 90725897 90725688 4.710000e-75 292
6 TraesCS1D01G300200 chr1A 90.222 225 17 4 2418 2637 311851047 311851271 6.090000e-74 289
7 TraesCS1D01G300200 chr1B 94.800 1500 73 4 3313 4808 533863785 533865283 0.000000e+00 2333
8 TraesCS1D01G300200 chr1B 92.715 1208 67 10 894 2094 533861676 533862869 0.000000e+00 1724
9 TraesCS1D01G300200 chr1B 92.162 370 12 7 1 366 533861239 533861595 1.540000e-139 507
10 TraesCS1D01G300200 chr3D 96.296 216 5 1 2430 2642 611923167 611922952 7.660000e-93 351
11 TraesCS1D01G300200 chr6B 90.598 234 16 5 2412 2640 290223174 290222942 6.050000e-79 305
12 TraesCS1D01G300200 chr7B 90.000 230 18 3 2418 2642 638506919 638507148 4.710000e-75 292
13 TraesCS1D01G300200 chrUn 91.204 216 14 2 2430 2642 452995897 452996110 6.090000e-74 289
14 TraesCS1D01G300200 chr3B 91.204 216 14 2 2430 2642 815642281 815642068 6.090000e-74 289
15 TraesCS1D01G300200 chr5D 89.030 237 17 7 2418 2647 449674784 449675018 7.880000e-73 285
16 TraesCS1D01G300200 chr6D 88.559 236 20 5 2412 2641 363386419 363386185 3.660000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G300200 chr1D 398455372 398460179 4807 False 3953.000000 7230 100.000000 1 4808 2 chr1D.!!$F1 4807
1 TraesCS1D01G300200 chr1A 495444079 495448164 4085 False 1475.666667 2335 89.784333 11 4788 3 chr1A.!!$F2 4777
2 TraesCS1D01G300200 chr1B 533861239 533865283 4044 False 1521.333333 2333 93.225667 1 4808 3 chr1B.!!$F1 4807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.869730 CAGCAAGTTGCCCATTTTGC 59.130 50.0 24.02 0.00 46.52 3.68 F
1126 1138 0.039617 CGAGGTGAGGATCGCTGATC 60.040 60.0 9.24 9.24 46.91 2.92 F
1165 1181 0.748005 AGCTTGTGTTGTCTTGCCGT 60.748 50.0 0.00 0.00 0.00 5.68 F
2050 2072 1.977056 TCGATACTGCGGTCTATGGT 58.023 50.0 0.00 0.00 0.00 3.55 F
2239 2261 0.036164 TCAACCCACCATCAACCGAG 59.964 55.0 0.00 0.00 0.00 4.63 F
3171 3435 0.034059 AGACGTTGCCACCTCTCAAG 59.966 55.0 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1165 1181 0.391927 CCGAAGAACGCCAACCCATA 60.392 55.000 0.00 0.00 41.07 2.74 R
2220 2242 0.036164 CTCGGTTGATGGTGGGTTGA 59.964 55.000 0.00 0.00 0.00 3.18 R
2228 2250 0.036164 TTGTGGACCTCGGTTGATGG 59.964 55.000 0.00 0.00 0.00 3.51 R
3105 3369 0.102120 TGACGTCAACGGTTACGGTT 59.898 50.000 17.62 2.41 46.48 4.44 R
3372 3672 1.265095 CGCAAGACACAATGCTCAGTT 59.735 47.619 0.00 0.00 40.39 3.16 R
4544 4853 0.030399 AGCTAACCCCGGTCCCTAAT 60.030 55.000 0.00 0.00 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.224267 TCCTTTCAAAATTTCATCAACAACAAA 57.776 25.926 0.00 0.00 0.00 2.83
81 82 1.594397 GGCAAAGTTTCAGCAAGTTGC 59.406 47.619 20.44 20.44 45.46 4.17
84 85 1.484038 AAGTTTCAGCAAGTTGCCCA 58.516 45.000 24.02 8.25 46.52 5.36
85 86 1.708341 AGTTTCAGCAAGTTGCCCAT 58.292 45.000 24.02 2.98 46.52 4.00
86 87 2.041701 AGTTTCAGCAAGTTGCCCATT 58.958 42.857 24.02 2.57 46.52 3.16
88 89 3.118298 AGTTTCAGCAAGTTGCCCATTTT 60.118 39.130 24.02 1.36 46.52 1.82
89 90 2.529780 TCAGCAAGTTGCCCATTTTG 57.470 45.000 24.02 14.39 46.52 2.44
90 91 0.869730 CAGCAAGTTGCCCATTTTGC 59.130 50.000 24.02 0.00 46.52 3.68
93 94 1.198178 GCAAGTTGCCCATTTTGCATG 59.802 47.619 17.36 0.00 43.93 4.06
97 103 2.632028 AGTTGCCCATTTTGCATGTGTA 59.368 40.909 0.00 0.00 38.76 2.90
125 131 3.521937 TGGGTTCGTCCTATTTCCATTCT 59.478 43.478 0.00 0.00 36.25 2.40
126 132 4.717778 TGGGTTCGTCCTATTTCCATTCTA 59.282 41.667 0.00 0.00 36.25 2.10
275 282 3.474570 CCCAAGCCTCCTCCTCCG 61.475 72.222 0.00 0.00 0.00 4.63
316 323 3.077359 CTGCGAAACTTCCAATTCCTCT 58.923 45.455 0.00 0.00 0.00 3.69
317 324 3.074412 TGCGAAACTTCCAATTCCTCTC 58.926 45.455 0.00 0.00 0.00 3.20
318 325 2.420372 GCGAAACTTCCAATTCCTCTCC 59.580 50.000 0.00 0.00 0.00 3.71
319 326 3.870299 GCGAAACTTCCAATTCCTCTCCT 60.870 47.826 0.00 0.00 0.00 3.69
320 327 3.935828 CGAAACTTCCAATTCCTCTCCTC 59.064 47.826 0.00 0.00 0.00 3.71
1119 1131 2.833582 TCCGGCGAGGTGAGGATC 60.834 66.667 9.30 0.00 41.99 3.36
1126 1138 0.039617 CGAGGTGAGGATCGCTGATC 60.040 60.000 9.24 9.24 46.91 2.92
1153 1169 5.237344 ACTTGTTTGAGTTAGCTAGCTTGTG 59.763 40.000 24.88 3.28 0.00 3.33
1162 1178 1.876156 AGCTAGCTTGTGTTGTCTTGC 59.124 47.619 12.68 0.00 0.00 4.01
1165 1181 0.748005 AGCTTGTGTTGTCTTGCCGT 60.748 50.000 0.00 0.00 0.00 5.68
1217 1236 4.578928 ACGAGCTTTGATTTAGTGGTTGTT 59.421 37.500 0.00 0.00 0.00 2.83
1223 1242 7.439056 AGCTTTGATTTAGTGGTTGTTTTGATG 59.561 33.333 0.00 0.00 0.00 3.07
1249 1268 3.077556 AGGGAGCGCCTGTACCTG 61.078 66.667 2.29 0.00 0.00 4.00
1276 1295 3.027412 GCTACAGGTGGATCTGAGAAGA 58.973 50.000 0.00 0.00 38.11 2.87
1362 1381 3.283684 CAGAAAACACCGCCGGCA 61.284 61.111 28.98 0.00 0.00 5.69
1374 1393 2.252260 CCGGCAGAAACAACGCAG 59.748 61.111 0.00 0.00 0.00 5.18
1437 1456 2.918600 GGAAACGACACAAACACCAAAC 59.081 45.455 0.00 0.00 0.00 2.93
1446 1465 3.315191 CACAAACACCAAACGATTCTCCT 59.685 43.478 0.00 0.00 0.00 3.69
1584 1603 2.028112 TGAATCAACTGGAGGAGGTTCG 60.028 50.000 0.00 0.00 0.00 3.95
1644 1663 3.099905 TGAGGAGTGTAAGGATCCAGTG 58.900 50.000 15.82 0.00 35.45 3.66
1717 1736 6.875076 ACAGGTAACATTACTAGTCATGTCC 58.125 40.000 20.21 17.56 41.41 4.02
1721 1740 8.041323 AGGTAACATTACTAGTCATGTCCAAAG 58.959 37.037 20.21 0.00 41.41 2.77
1863 1883 4.910195 ACTTGGACATTGATGCTTCAGTA 58.090 39.130 2.23 0.00 32.27 2.74
1864 1884 4.940046 ACTTGGACATTGATGCTTCAGTAG 59.060 41.667 2.23 0.37 32.27 2.57
1879 1899 6.039382 TGCTTCAGTAGATTCTTATGAGCGTA 59.961 38.462 0.00 0.00 0.00 4.42
2041 2063 5.749620 ACAGATAACTACTTCGATACTGCG 58.250 41.667 0.00 0.00 0.00 5.18
2050 2072 1.977056 TCGATACTGCGGTCTATGGT 58.023 50.000 0.00 0.00 0.00 3.55
2059 2081 8.998277 ATACTGCGGTCTATGGTATCTATATT 57.002 34.615 0.00 0.00 0.00 1.28
2060 2082 7.719871 ACTGCGGTCTATGGTATCTATATTT 57.280 36.000 0.00 0.00 0.00 1.40
2061 2083 8.818622 ACTGCGGTCTATGGTATCTATATTTA 57.181 34.615 0.00 0.00 0.00 1.40
2062 2084 8.684520 ACTGCGGTCTATGGTATCTATATTTAC 58.315 37.037 0.00 0.00 0.00 2.01
2063 2085 8.584063 TGCGGTCTATGGTATCTATATTTACA 57.416 34.615 0.00 0.00 0.00 2.41
2064 2086 8.683615 TGCGGTCTATGGTATCTATATTTACAG 58.316 37.037 0.00 0.00 0.00 2.74
2065 2087 7.648510 GCGGTCTATGGTATCTATATTTACAGC 59.351 40.741 0.00 0.00 0.00 4.40
2066 2088 8.683615 CGGTCTATGGTATCTATATTTACAGCA 58.316 37.037 0.00 0.00 0.00 4.41
2067 2089 9.804758 GGTCTATGGTATCTATATTTACAGCAC 57.195 37.037 0.00 0.00 0.00 4.40
2094 2116 8.879342 AGCACAAGTAATACTGACATATCTTC 57.121 34.615 0.00 0.00 0.00 2.87
2095 2117 8.478066 AGCACAAGTAATACTGACATATCTTCA 58.522 33.333 0.00 0.00 0.00 3.02
2096 2118 9.265901 GCACAAGTAATACTGACATATCTTCAT 57.734 33.333 0.00 0.00 0.00 2.57
2130 2152 9.699410 ACTATCATGAATTACCCAATCAAGAAA 57.301 29.630 0.00 0.00 0.00 2.52
2132 2154 8.599624 ATCATGAATTACCCAATCAAGAAAGT 57.400 30.769 0.00 0.00 0.00 2.66
2133 2155 8.055279 TCATGAATTACCCAATCAAGAAAGTC 57.945 34.615 0.00 0.00 0.00 3.01
2134 2156 7.669304 TCATGAATTACCCAATCAAGAAAGTCA 59.331 33.333 0.00 0.00 0.00 3.41
2135 2157 8.472413 CATGAATTACCCAATCAAGAAAGTCAT 58.528 33.333 0.00 0.00 33.44 3.06
2136 2158 9.699410 ATGAATTACCCAATCAAGAAAGTCATA 57.301 29.630 0.00 0.00 32.00 2.15
2137 2159 9.527157 TGAATTACCCAATCAAGAAAGTCATAA 57.473 29.630 0.00 0.00 0.00 1.90
2139 2161 5.904362 ACCCAATCAAGAAAGTCATAAGC 57.096 39.130 0.00 0.00 0.00 3.09
2140 2162 5.574188 ACCCAATCAAGAAAGTCATAAGCT 58.426 37.500 0.00 0.00 0.00 3.74
2141 2163 6.012745 ACCCAATCAAGAAAGTCATAAGCTT 58.987 36.000 3.48 3.48 0.00 3.74
2142 2164 6.071728 ACCCAATCAAGAAAGTCATAAGCTTG 60.072 38.462 9.86 0.00 37.79 4.01
2143 2165 6.071728 CCCAATCAAGAAAGTCATAAGCTTGT 60.072 38.462 9.86 0.00 37.71 3.16
2144 2166 7.025963 CCAATCAAGAAAGTCATAAGCTTGTC 58.974 38.462 9.86 0.00 37.71 3.18
2145 2167 7.094463 CCAATCAAGAAAGTCATAAGCTTGTCT 60.094 37.037 9.86 0.00 37.71 3.41
2146 2168 7.992754 ATCAAGAAAGTCATAAGCTTGTCTT 57.007 32.000 9.86 0.34 37.71 3.01
2147 2169 7.426929 TCAAGAAAGTCATAAGCTTGTCTTC 57.573 36.000 9.86 2.88 37.71 2.87
2148 2170 6.992123 TCAAGAAAGTCATAAGCTTGTCTTCA 59.008 34.615 9.86 0.00 37.71 3.02
2149 2171 7.172190 TCAAGAAAGTCATAAGCTTGTCTTCAG 59.828 37.037 9.86 0.00 37.71 3.02
2150 2172 6.763355 AGAAAGTCATAAGCTTGTCTTCAGA 58.237 36.000 9.86 0.00 36.25 3.27
2151 2173 7.220030 AGAAAGTCATAAGCTTGTCTTCAGAA 58.780 34.615 9.86 0.00 36.25 3.02
2152 2174 6.793492 AAGTCATAAGCTTGTCTTCAGAAC 57.207 37.500 9.86 0.00 36.25 3.01
2153 2175 6.107901 AGTCATAAGCTTGTCTTCAGAACT 57.892 37.500 9.86 0.00 36.25 3.01
2154 2176 7.233389 AGTCATAAGCTTGTCTTCAGAACTA 57.767 36.000 9.86 0.00 36.25 2.24
2155 2177 7.093992 AGTCATAAGCTTGTCTTCAGAACTAC 58.906 38.462 9.86 0.00 36.25 2.73
2156 2178 6.868864 GTCATAAGCTTGTCTTCAGAACTACA 59.131 38.462 9.86 0.00 36.25 2.74
2157 2179 7.547370 GTCATAAGCTTGTCTTCAGAACTACAT 59.453 37.037 9.86 0.00 36.25 2.29
2158 2180 8.749354 TCATAAGCTTGTCTTCAGAACTACATA 58.251 33.333 9.86 0.00 36.25 2.29
2159 2181 9.539825 CATAAGCTTGTCTTCAGAACTACATAT 57.460 33.333 9.86 0.00 36.25 1.78
2160 2182 9.757227 ATAAGCTTGTCTTCAGAACTACATATC 57.243 33.333 9.86 0.00 36.25 1.63
2161 2183 7.416964 AGCTTGTCTTCAGAACTACATATCT 57.583 36.000 0.00 0.00 0.00 1.98
2162 2184 7.846066 AGCTTGTCTTCAGAACTACATATCTT 58.154 34.615 0.00 0.00 0.00 2.40
2163 2185 8.972127 AGCTTGTCTTCAGAACTACATATCTTA 58.028 33.333 0.00 0.00 0.00 2.10
2164 2186 9.587772 GCTTGTCTTCAGAACTACATATCTTAA 57.412 33.333 0.00 0.00 0.00 1.85
2174 2196 9.790389 AGAACTACATATCTTAAGTTGAAGTCG 57.210 33.333 1.63 0.00 32.51 4.18
2175 2197 9.570488 GAACTACATATCTTAAGTTGAAGTCGT 57.430 33.333 1.63 0.00 32.51 4.34
2176 2198 9.570488 AACTACATATCTTAAGTTGAAGTCGTC 57.430 33.333 1.63 0.00 31.20 4.20
2177 2199 7.909121 ACTACATATCTTAAGTTGAAGTCGTCG 59.091 37.037 1.63 0.00 0.00 5.12
2178 2200 6.849502 ACATATCTTAAGTTGAAGTCGTCGA 58.150 36.000 1.63 0.00 0.00 4.20
2179 2201 7.310664 ACATATCTTAAGTTGAAGTCGTCGAA 58.689 34.615 1.63 0.00 0.00 3.71
2180 2202 7.811236 ACATATCTTAAGTTGAAGTCGTCGAAA 59.189 33.333 1.63 0.00 0.00 3.46
2181 2203 8.808529 CATATCTTAAGTTGAAGTCGTCGAAAT 58.191 33.333 1.63 0.00 0.00 2.17
2182 2204 7.653767 ATCTTAAGTTGAAGTCGTCGAAATT 57.346 32.000 1.63 0.00 0.00 1.82
2183 2205 7.473027 TCTTAAGTTGAAGTCGTCGAAATTT 57.527 32.000 1.63 0.00 0.00 1.82
2184 2206 7.912383 TCTTAAGTTGAAGTCGTCGAAATTTT 58.088 30.769 1.63 0.00 0.00 1.82
2185 2207 8.060090 TCTTAAGTTGAAGTCGTCGAAATTTTC 58.940 33.333 1.63 0.00 0.00 2.29
2186 2208 5.728351 AGTTGAAGTCGTCGAAATTTTCA 57.272 34.783 9.66 2.80 0.00 2.69
2187 2209 6.114221 AGTTGAAGTCGTCGAAATTTTCAA 57.886 33.333 15.55 15.55 33.58 2.69
2188 2210 6.192360 AGTTGAAGTCGTCGAAATTTTCAAG 58.808 36.000 18.05 0.59 35.83 3.02
2189 2211 5.977171 TGAAGTCGTCGAAATTTTCAAGA 57.023 34.783 9.66 2.76 0.00 3.02
2190 2212 6.539649 TGAAGTCGTCGAAATTTTCAAGAT 57.460 33.333 9.66 0.00 0.00 2.40
2191 2213 6.954944 TGAAGTCGTCGAAATTTTCAAGATT 58.045 32.000 9.66 0.26 0.00 2.40
2192 2214 7.414436 TGAAGTCGTCGAAATTTTCAAGATTT 58.586 30.769 9.66 7.62 0.00 2.17
2193 2215 7.913297 TGAAGTCGTCGAAATTTTCAAGATTTT 59.087 29.630 9.66 4.73 0.00 1.82
2194 2216 9.377383 GAAGTCGTCGAAATTTTCAAGATTTTA 57.623 29.630 9.66 0.00 0.00 1.52
2195 2217 8.709496 AGTCGTCGAAATTTTCAAGATTTTAC 57.291 30.769 9.66 0.00 0.00 2.01
2196 2218 8.557029 AGTCGTCGAAATTTTCAAGATTTTACT 58.443 29.630 9.66 0.00 0.00 2.24
2197 2219 8.828541 GTCGTCGAAATTTTCAAGATTTTACTC 58.171 33.333 9.66 0.00 0.00 2.59
2198 2220 8.013378 TCGTCGAAATTTTCAAGATTTTACTCC 58.987 33.333 9.66 0.00 0.00 3.85
2199 2221 7.801315 CGTCGAAATTTTCAAGATTTTACTCCA 59.199 33.333 9.66 0.00 0.00 3.86
2200 2222 9.626045 GTCGAAATTTTCAAGATTTTACTCCAT 57.374 29.630 9.66 0.00 0.00 3.41
2229 2251 3.552132 AAAACAATGGTTCAACCCACC 57.448 42.857 3.42 0.00 37.50 4.61
2235 2257 1.698506 TGGTTCAACCCACCATCAAC 58.301 50.000 3.42 0.00 39.53 3.18
2236 2258 0.966179 GGTTCAACCCACCATCAACC 59.034 55.000 0.00 0.00 34.04 3.77
2237 2259 0.596082 GTTCAACCCACCATCAACCG 59.404 55.000 0.00 0.00 0.00 4.44
2238 2260 0.474614 TTCAACCCACCATCAACCGA 59.525 50.000 0.00 0.00 0.00 4.69
2239 2261 0.036164 TCAACCCACCATCAACCGAG 59.964 55.000 0.00 0.00 0.00 4.63
2240 2262 0.960364 CAACCCACCATCAACCGAGG 60.960 60.000 0.00 0.00 0.00 4.63
2241 2263 1.423794 AACCCACCATCAACCGAGGT 61.424 55.000 0.00 0.00 35.65 3.85
2242 2264 1.078426 CCCACCATCAACCGAGGTC 60.078 63.158 0.00 0.00 32.15 3.85
2243 2265 1.078426 CCACCATCAACCGAGGTCC 60.078 63.158 0.00 0.00 32.15 4.46
2244 2266 1.676968 CACCATCAACCGAGGTCCA 59.323 57.895 0.00 0.00 32.15 4.02
2245 2267 0.673644 CACCATCAACCGAGGTCCAC 60.674 60.000 0.00 0.00 32.15 4.02
2246 2268 1.125093 ACCATCAACCGAGGTCCACA 61.125 55.000 0.00 0.00 0.00 4.17
2247 2269 0.036164 CCATCAACCGAGGTCCACAA 59.964 55.000 0.00 0.00 0.00 3.33
2248 2270 1.442769 CATCAACCGAGGTCCACAAG 58.557 55.000 0.00 0.00 0.00 3.16
2249 2271 1.001974 CATCAACCGAGGTCCACAAGA 59.998 52.381 0.00 0.00 0.00 3.02
2250 2272 1.348064 TCAACCGAGGTCCACAAGAT 58.652 50.000 0.00 0.00 0.00 2.40
2251 2273 1.001974 TCAACCGAGGTCCACAAGATG 59.998 52.381 0.00 0.00 0.00 2.90
2268 2290 6.633500 CAAGATGGTCTTGTCCTTTGTAAA 57.367 37.500 10.72 0.00 46.50 2.01
2269 2291 7.219484 CAAGATGGTCTTGTCCTTTGTAAAT 57.781 36.000 10.72 0.00 46.50 1.40
2270 2292 6.824305 AGATGGTCTTGTCCTTTGTAAATG 57.176 37.500 0.00 0.00 0.00 2.32
2271 2293 4.846779 TGGTCTTGTCCTTTGTAAATGC 57.153 40.909 0.00 0.00 0.00 3.56
2272 2294 4.211125 TGGTCTTGTCCTTTGTAAATGCA 58.789 39.130 0.00 0.00 0.00 3.96
2273 2295 4.832266 TGGTCTTGTCCTTTGTAAATGCAT 59.168 37.500 0.00 0.00 0.00 3.96
2274 2296 5.304101 TGGTCTTGTCCTTTGTAAATGCATT 59.696 36.000 5.99 5.99 0.00 3.56
2275 2297 6.491745 TGGTCTTGTCCTTTGTAAATGCATTA 59.508 34.615 13.39 0.00 0.00 1.90
2276 2298 7.014711 TGGTCTTGTCCTTTGTAAATGCATTAA 59.985 33.333 13.39 0.08 0.00 1.40
2277 2299 8.034804 GGTCTTGTCCTTTGTAAATGCATTAAT 58.965 33.333 13.39 0.00 0.00 1.40
2278 2300 9.423061 GTCTTGTCCTTTGTAAATGCATTAATT 57.577 29.630 13.39 0.00 0.00 1.40
2279 2301 9.421806 TCTTGTCCTTTGTAAATGCATTAATTG 57.578 29.630 13.39 1.63 0.00 2.32
2280 2302 9.206870 CTTGTCCTTTGTAAATGCATTAATTGT 57.793 29.630 13.39 0.00 0.00 2.71
2305 2327 9.953697 GTAGTACAGTTTCTATCTTCTATGTGG 57.046 37.037 0.00 0.00 0.00 4.17
2330 2353 7.093771 GGATTGTCCAATTGAATCTTAAGTGGT 60.094 37.037 7.12 0.00 42.27 4.16
2354 2377 4.934356 TGGCCTTCCTTGTTATGATTCTT 58.066 39.130 3.32 0.00 0.00 2.52
2359 2382 7.258441 GCCTTCCTTGTTATGATTCTTTAACC 58.742 38.462 7.28 0.00 0.00 2.85
2374 2397 5.016173 TCTTTAACCATGGTCCATTTGGAG 58.984 41.667 20.07 8.04 46.49 3.86
2381 2404 5.014544 ACCATGGTCCATTTGGAGATATAGG 59.985 44.000 13.00 6.69 46.49 2.57
2382 2405 4.640771 TGGTCCATTTGGAGATATAGGC 57.359 45.455 0.00 0.00 46.49 3.93
2383 2406 3.330701 TGGTCCATTTGGAGATATAGGCC 59.669 47.826 0.00 0.00 46.49 5.19
2384 2407 3.308473 GGTCCATTTGGAGATATAGGCCC 60.308 52.174 0.00 0.00 46.49 5.80
2385 2408 3.589288 GTCCATTTGGAGATATAGGCCCT 59.411 47.826 0.00 0.00 46.49 5.19
2386 2409 3.588842 TCCATTTGGAGATATAGGCCCTG 59.411 47.826 0.00 0.00 39.78 4.45
2387 2410 3.331889 CCATTTGGAGATATAGGCCCTGT 59.668 47.826 0.00 0.00 37.39 4.00
2388 2411 4.202609 CCATTTGGAGATATAGGCCCTGTT 60.203 45.833 0.00 0.00 37.39 3.16
2389 2412 5.388654 CATTTGGAGATATAGGCCCTGTTT 58.611 41.667 0.00 0.00 0.00 2.83
2390 2413 4.437682 TTGGAGATATAGGCCCTGTTTG 57.562 45.455 0.00 0.00 0.00 2.93
2391 2414 3.393687 TGGAGATATAGGCCCTGTTTGT 58.606 45.455 0.00 0.00 0.00 2.83
2392 2415 3.785887 TGGAGATATAGGCCCTGTTTGTT 59.214 43.478 0.00 0.00 0.00 2.83
2393 2416 4.229582 TGGAGATATAGGCCCTGTTTGTTT 59.770 41.667 0.00 0.00 0.00 2.83
2394 2417 4.580580 GGAGATATAGGCCCTGTTTGTTTG 59.419 45.833 0.00 0.00 0.00 2.93
2395 2418 4.536765 AGATATAGGCCCTGTTTGTTTGG 58.463 43.478 0.00 0.00 0.00 3.28
2396 2419 1.937191 ATAGGCCCTGTTTGTTTGGG 58.063 50.000 0.00 0.00 43.62 4.12
2401 2424 2.708216 CCCTGTTTGTTTGGGCTTTT 57.292 45.000 0.00 0.00 33.88 2.27
2402 2425 2.287769 CCCTGTTTGTTTGGGCTTTTG 58.712 47.619 0.00 0.00 33.88 2.44
2403 2426 1.670295 CCTGTTTGTTTGGGCTTTTGC 59.330 47.619 0.00 0.00 46.64 3.68
2404 2427 2.631267 CTGTTTGTTTGGGCTTTTGCT 58.369 42.857 0.00 0.00 46.54 3.91
2405 2428 3.009026 CTGTTTGTTTGGGCTTTTGCTT 58.991 40.909 0.00 0.00 46.54 3.91
2406 2429 3.006247 TGTTTGTTTGGGCTTTTGCTTC 58.994 40.909 0.00 0.00 46.54 3.86
2407 2430 3.270027 GTTTGTTTGGGCTTTTGCTTCT 58.730 40.909 0.00 0.00 46.54 2.85
2408 2431 2.600470 TGTTTGGGCTTTTGCTTCTG 57.400 45.000 0.00 0.00 46.54 3.02
2409 2432 1.220529 GTTTGGGCTTTTGCTTCTGC 58.779 50.000 0.00 0.00 46.54 4.26
2410 2433 1.122227 TTTGGGCTTTTGCTTCTGCT 58.878 45.000 0.00 0.00 46.54 4.24
2411 2434 1.122227 TTGGGCTTTTGCTTCTGCTT 58.878 45.000 0.00 0.00 46.54 3.91
2412 2435 1.122227 TGGGCTTTTGCTTCTGCTTT 58.878 45.000 0.00 0.00 46.54 3.51
2413 2436 1.485895 TGGGCTTTTGCTTCTGCTTTT 59.514 42.857 0.00 0.00 46.54 2.27
2414 2437 1.869132 GGGCTTTTGCTTCTGCTTTTG 59.131 47.619 0.00 0.00 46.54 2.44
2415 2438 1.262417 GGCTTTTGCTTCTGCTTTTGC 59.738 47.619 0.00 0.00 46.54 3.68
2451 2474 3.369546 TTGCAGCTTTTCTACTTTGGC 57.630 42.857 0.00 0.00 0.00 4.52
2452 2475 1.613437 TGCAGCTTTTCTACTTTGGCC 59.387 47.619 0.00 0.00 0.00 5.36
2453 2476 1.613437 GCAGCTTTTCTACTTTGGCCA 59.387 47.619 0.00 0.00 0.00 5.36
2454 2477 2.035832 GCAGCTTTTCTACTTTGGCCAA 59.964 45.455 16.05 16.05 0.00 4.52
2455 2478 3.492482 GCAGCTTTTCTACTTTGGCCAAA 60.492 43.478 28.65 28.65 0.00 3.28
2456 2479 4.692228 CAGCTTTTCTACTTTGGCCAAAA 58.308 39.130 29.93 16.56 0.00 2.44
2457 2480 5.115480 CAGCTTTTCTACTTTGGCCAAAAA 58.885 37.500 29.93 19.05 0.00 1.94
2458 2481 5.234972 CAGCTTTTCTACTTTGGCCAAAAAG 59.765 40.000 29.93 26.72 41.91 2.27
2459 2482 4.024893 GCTTTTCTACTTTGGCCAAAAAGC 60.025 41.667 31.77 31.77 46.19 3.51
2469 2492 1.667236 GCCAAAAAGCCACAAAAGCT 58.333 45.000 0.00 0.00 44.19 3.74
2470 2493 1.599071 GCCAAAAAGCCACAAAAGCTC 59.401 47.619 0.00 0.00 40.49 4.09
2471 2494 2.212652 CCAAAAAGCCACAAAAGCTCC 58.787 47.619 0.00 0.00 40.49 4.70
2472 2495 2.158914 CCAAAAAGCCACAAAAGCTCCT 60.159 45.455 0.00 0.00 40.49 3.69
2473 2496 3.069443 CCAAAAAGCCACAAAAGCTCCTA 59.931 43.478 0.00 0.00 40.49 2.94
2474 2497 4.442753 CCAAAAAGCCACAAAAGCTCCTAA 60.443 41.667 0.00 0.00 40.49 2.69
2475 2498 5.115480 CAAAAAGCCACAAAAGCTCCTAAA 58.885 37.500 0.00 0.00 40.49 1.85
2476 2499 5.551305 AAAAGCCACAAAAGCTCCTAAAT 57.449 34.783 0.00 0.00 40.49 1.40
2477 2500 6.664428 AAAAGCCACAAAAGCTCCTAAATA 57.336 33.333 0.00 0.00 40.49 1.40
2478 2501 5.904362 AAGCCACAAAAGCTCCTAAATAG 57.096 39.130 0.00 0.00 40.49 1.73
2479 2502 4.273318 AGCCACAAAAGCTCCTAAATAGG 58.727 43.478 0.00 0.00 45.02 2.57
2480 2503 4.017126 GCCACAAAAGCTCCTAAATAGGT 58.983 43.478 6.39 0.00 44.02 3.08
2481 2504 4.142381 GCCACAAAAGCTCCTAAATAGGTG 60.142 45.833 6.39 5.41 44.02 4.00
2491 2514 4.270008 TCCTAAATAGGTGCTTTTGGAGC 58.730 43.478 6.39 0.00 45.81 4.70
2493 2516 4.706962 CCTAAATAGGTGCTTTTGGAGCTT 59.293 41.667 0.00 0.00 46.28 3.74
2494 2517 5.185828 CCTAAATAGGTGCTTTTGGAGCTTT 59.814 40.000 0.00 0.00 46.28 3.51
2495 2518 6.846710 CCTAAATAGGTGCTTTTGGAGCTTTG 60.847 42.308 0.00 0.00 46.28 2.77
2496 2519 8.925159 CCTAAATAGGTGCTTTTGGAGCTTTGA 61.925 40.741 0.00 0.00 46.28 2.69
2505 2528 6.051646 CTTTTGGAGCTTTGATGGTTTTTG 57.948 37.500 0.00 0.00 0.00 2.44
2506 2529 5.350504 TTTGGAGCTTTGATGGTTTTTGA 57.649 34.783 0.00 0.00 0.00 2.69
2507 2530 4.320608 TGGAGCTTTGATGGTTTTTGAC 57.679 40.909 0.00 0.00 0.00 3.18
2508 2531 3.243367 TGGAGCTTTGATGGTTTTTGACG 60.243 43.478 0.00 0.00 0.00 4.35
2509 2532 3.004315 GGAGCTTTGATGGTTTTTGACGA 59.996 43.478 0.00 0.00 0.00 4.20
2510 2533 4.499019 GGAGCTTTGATGGTTTTTGACGAA 60.499 41.667 0.00 0.00 0.00 3.85
2511 2534 5.200368 AGCTTTGATGGTTTTTGACGAAT 57.800 34.783 0.00 0.00 0.00 3.34
2512 2535 5.222631 AGCTTTGATGGTTTTTGACGAATC 58.777 37.500 0.00 0.00 0.00 2.52
2513 2536 4.981674 GCTTTGATGGTTTTTGACGAATCA 59.018 37.500 0.00 0.00 33.00 2.57
2514 2537 5.461737 GCTTTGATGGTTTTTGACGAATCAA 59.538 36.000 0.00 0.00 43.28 2.57
2515 2538 6.146021 GCTTTGATGGTTTTTGACGAATCAAT 59.854 34.615 0.00 0.00 44.36 2.57
2516 2539 7.328249 GCTTTGATGGTTTTTGACGAATCAATA 59.672 33.333 0.00 0.00 44.36 1.90
2517 2540 9.357652 CTTTGATGGTTTTTGACGAATCAATAT 57.642 29.630 0.00 0.00 44.36 1.28
2520 2543 9.781834 TGATGGTTTTTGACGAATCAATATAAC 57.218 29.630 0.00 0.00 44.36 1.89
2521 2544 9.781834 GATGGTTTTTGACGAATCAATATAACA 57.218 29.630 0.00 0.00 44.36 2.41
2548 2571 1.788258 GCTCCAAAAGCCAGAAAAGC 58.212 50.000 0.00 0.00 45.92 3.51
2549 2572 1.342496 GCTCCAAAAGCCAGAAAAGCT 59.658 47.619 0.00 0.00 45.92 3.74
2550 2573 2.608998 GCTCCAAAAGCCAGAAAAGCTC 60.609 50.000 0.00 0.00 45.92 4.09
2551 2574 2.889678 CTCCAAAAGCCAGAAAAGCTCT 59.110 45.455 0.00 0.00 40.49 4.09
2552 2575 4.074970 CTCCAAAAGCCAGAAAAGCTCTA 58.925 43.478 0.00 0.00 40.49 2.43
2553 2576 4.469657 TCCAAAAGCCAGAAAAGCTCTAA 58.530 39.130 0.00 0.00 40.49 2.10
2554 2577 4.892934 TCCAAAAGCCAGAAAAGCTCTAAA 59.107 37.500 0.00 0.00 40.49 1.85
2555 2578 5.362430 TCCAAAAGCCAGAAAAGCTCTAAAA 59.638 36.000 0.00 0.00 40.49 1.52
2556 2579 5.693555 CCAAAAGCCAGAAAAGCTCTAAAAG 59.306 40.000 0.00 0.00 40.49 2.27
2580 2603 6.319141 CACCTATTTAGGAGCTTTTATGGC 57.681 41.667 10.61 0.00 46.63 4.40
2581 2604 6.064717 CACCTATTTAGGAGCTTTTATGGCT 58.935 40.000 10.61 0.00 46.63 4.75
2582 2605 6.547510 CACCTATTTAGGAGCTTTTATGGCTT 59.452 38.462 10.61 0.00 46.63 4.35
2583 2606 7.068716 CACCTATTTAGGAGCTTTTATGGCTTT 59.931 37.037 10.61 0.00 46.63 3.51
2584 2607 7.619698 ACCTATTTAGGAGCTTTTATGGCTTTT 59.380 33.333 10.61 0.00 46.63 2.27
2585 2608 8.478066 CCTATTTAGGAGCTTTTATGGCTTTTT 58.522 33.333 0.00 0.00 46.63 1.94
2586 2609 9.305925 CTATTTAGGAGCTTTTATGGCTTTTTG 57.694 33.333 0.00 0.00 40.40 2.44
2587 2610 4.541973 AGGAGCTTTTATGGCTTTTTGG 57.458 40.909 0.00 0.00 40.40 3.28
2588 2611 3.002791 GGAGCTTTTATGGCTTTTTGGC 58.997 45.455 0.00 0.00 40.40 4.52
2600 2623 4.693538 GCTTTTTGGCCAAAGTGAAAAA 57.306 36.364 28.79 18.57 36.32 1.94
2601 2624 4.661125 GCTTTTTGGCCAAAGTGAAAAAG 58.339 39.130 28.79 26.24 43.53 2.27
2602 2625 4.661125 CTTTTTGGCCAAAGTGAAAAAGC 58.339 39.130 28.79 0.00 38.11 3.51
2603 2626 3.625649 TTTGGCCAAAGTGAAAAAGCT 57.374 38.095 27.13 0.00 0.00 3.74
2604 2627 4.744795 TTTGGCCAAAGTGAAAAAGCTA 57.255 36.364 27.13 0.00 0.00 3.32
2605 2628 4.744795 TTGGCCAAAGTGAAAAAGCTAA 57.255 36.364 17.98 0.00 0.00 3.09
2606 2629 4.744795 TGGCCAAAGTGAAAAAGCTAAA 57.255 36.364 0.61 0.00 0.00 1.85
2607 2630 4.692228 TGGCCAAAGTGAAAAAGCTAAAG 58.308 39.130 0.61 0.00 0.00 1.85
2608 2631 3.494626 GGCCAAAGTGAAAAAGCTAAAGC 59.505 43.478 0.00 0.00 42.49 3.51
2609 2632 4.119136 GCCAAAGTGAAAAAGCTAAAGCA 58.881 39.130 4.54 0.00 45.16 3.91
2610 2633 4.209911 GCCAAAGTGAAAAAGCTAAAGCAG 59.790 41.667 4.54 0.00 45.16 4.24
2611 2634 5.591099 CCAAAGTGAAAAAGCTAAAGCAGA 58.409 37.500 4.54 0.00 45.16 4.26
2612 2635 6.042143 CCAAAGTGAAAAAGCTAAAGCAGAA 58.958 36.000 4.54 0.00 45.16 3.02
2613 2636 6.199719 CCAAAGTGAAAAAGCTAAAGCAGAAG 59.800 38.462 4.54 0.00 45.16 2.85
2614 2637 4.864633 AGTGAAAAAGCTAAAGCAGAAGC 58.135 39.130 4.54 0.00 45.16 3.86
2615 2638 4.339247 AGTGAAAAAGCTAAAGCAGAAGCA 59.661 37.500 4.54 0.00 45.49 3.91
2616 2639 5.043248 GTGAAAAAGCTAAAGCAGAAGCAA 58.957 37.500 4.54 0.00 45.49 3.91
2617 2640 5.519927 GTGAAAAAGCTAAAGCAGAAGCAAA 59.480 36.000 4.54 0.00 45.49 3.68
2618 2641 6.035975 GTGAAAAAGCTAAAGCAGAAGCAAAA 59.964 34.615 4.54 0.00 45.49 2.44
2619 2642 6.256321 TGAAAAAGCTAAAGCAGAAGCAAAAG 59.744 34.615 4.54 0.00 45.49 2.27
2620 2643 3.294816 AGCTAAAGCAGAAGCAAAAGC 57.705 42.857 4.54 0.00 45.49 3.51
2621 2644 2.029560 AGCTAAAGCAGAAGCAAAAGCC 60.030 45.455 4.54 0.00 45.49 4.35
2622 2645 2.928301 GCTAAAGCAGAAGCAAAAGCCC 60.928 50.000 0.00 0.00 45.49 5.19
2623 2646 1.122227 AAAGCAGAAGCAAAAGCCCA 58.878 45.000 0.00 0.00 45.49 5.36
2624 2647 1.122227 AAGCAGAAGCAAAAGCCCAA 58.878 45.000 0.00 0.00 45.49 4.12
2625 2648 1.122227 AGCAGAAGCAAAAGCCCAAA 58.878 45.000 0.00 0.00 45.49 3.28
2626 2649 1.202568 AGCAGAAGCAAAAGCCCAAAC 60.203 47.619 0.00 0.00 45.49 2.93
2627 2650 1.473080 GCAGAAGCAAAAGCCCAAACA 60.473 47.619 0.00 0.00 41.58 2.83
2628 2651 2.903798 CAGAAGCAAAAGCCCAAACAA 58.096 42.857 0.00 0.00 0.00 2.83
2629 2652 3.269178 CAGAAGCAAAAGCCCAAACAAA 58.731 40.909 0.00 0.00 0.00 2.83
2630 2653 3.063861 CAGAAGCAAAAGCCCAAACAAAC 59.936 43.478 0.00 0.00 0.00 2.93
2631 2654 2.777832 AGCAAAAGCCCAAACAAACA 57.222 40.000 0.00 0.00 0.00 2.83
2632 2655 2.631267 AGCAAAAGCCCAAACAAACAG 58.369 42.857 0.00 0.00 0.00 3.16
2633 2656 1.670295 GCAAAAGCCCAAACAAACAGG 59.330 47.619 0.00 0.00 0.00 4.00
2634 2657 2.287769 CAAAAGCCCAAACAAACAGGG 58.712 47.619 0.00 0.00 45.68 4.45
2637 2660 3.962557 CCCAAACAAACAGGGCCA 58.037 55.556 6.18 0.00 35.44 5.36
2638 2661 2.450992 CCCAAACAAACAGGGCCAT 58.549 52.632 6.18 0.00 35.44 4.40
2639 2662 1.638529 CCCAAACAAACAGGGCCATA 58.361 50.000 6.18 0.00 35.44 2.74
2640 2663 1.550072 CCCAAACAAACAGGGCCATAG 59.450 52.381 6.18 0.00 35.44 2.23
2661 2684 4.152647 AGTGAGATGGTGAAGTACTGACA 58.847 43.478 0.00 0.00 0.00 3.58
2662 2685 4.774726 AGTGAGATGGTGAAGTACTGACAT 59.225 41.667 0.00 0.00 0.00 3.06
2673 2696 7.769044 GGTGAAGTACTGACATGGTATATTGTT 59.231 37.037 0.00 0.00 0.00 2.83
2683 2706 8.106462 TGACATGGTATATTGTTCTTGAAGGAA 58.894 33.333 0.00 0.00 0.00 3.36
2686 2709 9.613428 CATGGTATATTGTTCTTGAAGGAACTA 57.387 33.333 6.83 0.21 44.02 2.24
2733 2919 6.412214 TCAGAGGGCTTTGTTTAATAGTACC 58.588 40.000 0.00 0.00 0.00 3.34
2753 2939 8.591114 AGTACCAAGTAACTATGTACATGAGT 57.409 34.615 18.81 13.79 35.41 3.41
2754 2940 9.690913 AGTACCAAGTAACTATGTACATGAGTA 57.309 33.333 18.81 4.57 35.41 2.59
2790 2977 0.603569 AGTGCCTTAGTGGACAGTCG 59.396 55.000 0.00 0.00 38.35 4.18
2792 2979 1.185618 TGCCTTAGTGGACAGTCGCT 61.186 55.000 0.00 0.00 38.35 4.93
2808 2995 1.091771 CGCTTCAGGGCATACTGGTG 61.092 60.000 3.00 0.00 38.98 4.17
2810 2997 1.340017 GCTTCAGGGCATACTGGTGAA 60.340 52.381 3.00 0.00 38.98 3.18
2811 2998 2.684927 GCTTCAGGGCATACTGGTGAAT 60.685 50.000 3.00 0.00 38.98 2.57
2812 2999 2.715749 TCAGGGCATACTGGTGAATG 57.284 50.000 3.00 0.00 38.98 2.67
2847 3045 5.930837 ACAGGTTAAGAATCTCCAGAGAG 57.069 43.478 3.41 0.00 41.33 3.20
2854 3052 7.708752 GGTTAAGAATCTCCAGAGAGTAACATG 59.291 40.741 16.72 0.00 41.33 3.21
2861 3059 4.093743 TCCAGAGAGTAACATGCTGGTAA 58.906 43.478 11.54 0.00 44.91 2.85
2876 3074 8.147058 ACATGCTGGTAATTTGACAAACAATTA 58.853 29.630 1.94 0.00 38.36 1.40
2897 3095 0.386731 GTTTGCGCGTGGTAGCATTT 60.387 50.000 8.43 0.00 43.42 2.32
2907 3105 3.318275 CGTGGTAGCATTTCTCCTAGCTA 59.682 47.826 0.00 0.00 38.47 3.32
2908 3106 4.202121 CGTGGTAGCATTTCTCCTAGCTAA 60.202 45.833 0.00 0.00 40.83 3.09
2909 3107 5.671493 GTGGTAGCATTTCTCCTAGCTAAA 58.329 41.667 0.00 0.00 40.83 1.85
2910 3108 6.113411 GTGGTAGCATTTCTCCTAGCTAAAA 58.887 40.000 0.00 0.00 40.83 1.52
2917 3115 7.390162 AGCATTTCTCCTAGCTAAAATCATAGC 59.610 37.037 0.00 0.00 46.94 2.97
2935 3133 7.094508 TCATAGCATAGTCTATCTAGCTTGC 57.905 40.000 8.11 0.00 35.93 4.01
2940 3138 5.637387 GCATAGTCTATCTAGCTTGCCTTTC 59.363 44.000 0.00 0.00 31.67 2.62
2958 3205 7.950512 TGCCTTTCACTTTAATGAATCTGAAA 58.049 30.769 0.00 1.20 38.37 2.69
2963 3210 9.814899 TTTCACTTTAATGAATCTGAAAAAGCA 57.185 25.926 0.00 0.00 38.37 3.91
2987 3251 7.383300 GCATTATGCTTCTTTTCTTTCACTGTT 59.617 33.333 10.27 0.00 40.96 3.16
3006 3270 9.822727 TCACTGTTATAATATGGACTATCTGGA 57.177 33.333 0.00 0.00 0.00 3.86
3013 3277 6.380079 AATATGGACTATCTGGAATGACCC 57.620 41.667 0.00 0.00 38.00 4.46
3019 3283 5.163152 GGACTATCTGGAATGACCCTCAATT 60.163 44.000 0.00 0.00 38.00 2.32
3025 3289 3.011595 TGGAATGACCCTCAATTCCATGT 59.988 43.478 12.02 0.00 45.22 3.21
3027 3291 1.838112 TGACCCTCAATTCCATGTGC 58.162 50.000 0.00 0.00 0.00 4.57
3048 3312 3.985925 GCCTTGAGAAAGCTTCATGTTTG 59.014 43.478 0.00 0.00 0.00 2.93
3057 3321 7.550712 AGAAAGCTTCATGTTTGTTTCTTCTT 58.449 30.769 0.00 0.00 31.73 2.52
3068 3332 4.924305 TGTTTCTTCTTGCAGCTTCAAT 57.076 36.364 0.00 0.00 0.00 2.57
3105 3369 2.832129 AGTCGAGAATACTGGCCAGAAA 59.168 45.455 39.19 25.43 0.00 2.52
3127 3391 1.190763 CCGTAACCGTTGACGTCAAAG 59.809 52.381 31.20 30.43 37.63 2.77
3135 3399 2.298300 GTTGACGTCAAAGCAACATCG 58.702 47.619 31.20 0.00 41.04 3.84
3147 3411 8.436200 GTCAAAGCAACATCGGATATAAGTATC 58.564 37.037 0.00 0.00 36.73 2.24
3149 3413 8.773645 CAAAGCAACATCGGATATAAGTATCAA 58.226 33.333 0.00 0.00 38.77 2.57
3170 3434 0.249868 CAGACGTTGCCACCTCTCAA 60.250 55.000 0.00 0.00 0.00 3.02
3171 3435 0.034059 AGACGTTGCCACCTCTCAAG 59.966 55.000 0.00 0.00 0.00 3.02
3194 3458 8.272173 CAAGAAGGGTGAATCTAAAAGGGTATA 58.728 37.037 0.00 0.00 0.00 1.47
3197 3461 6.896883 AGGGTGAATCTAAAAGGGTATACAC 58.103 40.000 5.01 0.00 0.00 2.90
3239 3504 5.439721 AGCAATATGTGTATCTTCTTGGCA 58.560 37.500 0.00 0.00 0.00 4.92
3240 3505 6.066690 AGCAATATGTGTATCTTCTTGGCAT 58.933 36.000 0.00 0.00 0.00 4.40
3241 3506 6.016527 AGCAATATGTGTATCTTCTTGGCATG 60.017 38.462 0.00 0.00 0.00 4.06
3259 3524 1.896220 TGCTGGTGGTTCAGTCAATC 58.104 50.000 0.00 0.00 37.12 2.67
3269 3534 6.147328 GGTGGTTCAGTCAATCTAACTGTTAC 59.853 42.308 0.00 3.82 43.68 2.50
3271 3536 7.441458 GTGGTTCAGTCAATCTAACTGTTACTT 59.559 37.037 0.00 0.00 43.68 2.24
3287 3587 8.417273 ACTGTTACTTTTTATTTGTATGGCCT 57.583 30.769 3.32 0.00 0.00 5.19
3288 3588 8.866093 ACTGTTACTTTTTATTTGTATGGCCTT 58.134 29.630 3.32 0.00 0.00 4.35
3289 3589 9.705290 CTGTTACTTTTTATTTGTATGGCCTTT 57.295 29.630 3.32 0.00 0.00 3.11
3290 3590 9.699703 TGTTACTTTTTATTTGTATGGCCTTTC 57.300 29.630 3.32 0.00 0.00 2.62
3291 3591 9.923143 GTTACTTTTTATTTGTATGGCCTTTCT 57.077 29.630 3.32 0.00 0.00 2.52
3372 3672 5.045213 TGGAGAGGTTATGCTAAATGTTGGA 60.045 40.000 0.00 0.00 0.00 3.53
3438 3738 2.473984 GCAACAACAATTTCAGCAGCTC 59.526 45.455 0.00 0.00 0.00 4.09
3516 3816 2.983592 GTCTTGGTTGGGGCCGTG 60.984 66.667 0.00 0.00 0.00 4.94
3549 3849 0.751643 AGTTTGCAGGGACAAAGCGT 60.752 50.000 0.00 0.00 40.07 5.07
3651 3957 0.536915 GAGATGGCTGGGAAGATGGC 60.537 60.000 0.00 0.00 0.00 4.40
3753 4059 4.102367 GGCCTTTCTATGAGATCTCCAACT 59.898 45.833 20.03 5.03 0.00 3.16
3835 4141 5.048504 ACAGCATAATGTTGAAGGACTTGTG 60.049 40.000 0.00 0.00 32.65 3.33
3851 4158 3.438781 ACTTGTGCTTTCTTGTGAAACGA 59.561 39.130 0.00 0.00 42.39 3.85
3914 4221 6.715264 CAGTATCCAACCTTAACCTGAAACTT 59.285 38.462 0.00 0.00 0.00 2.66
3979 4286 9.799106 ATATCAAAGGCTTGCTTGTATTAGTAT 57.201 29.630 0.00 0.00 32.14 2.12
4175 4483 5.105716 TGTGTTGAATACTACTCTCCTGAGC 60.106 44.000 0.00 0.00 43.85 4.26
4290 4598 3.508840 GGCTGCCATTAACGCGCT 61.509 61.111 15.17 0.00 0.00 5.92
4384 4692 1.593787 ACTGCCGAGTCACCATCTG 59.406 57.895 0.00 0.00 0.00 2.90
4413 4721 2.905415 TGTTCCCTTCCTCATGCATT 57.095 45.000 0.00 0.00 0.00 3.56
4424 4732 2.602878 CTCATGCATTTGTGCTTCACC 58.397 47.619 0.00 0.00 32.73 4.02
4544 4853 7.761038 TTTGACTAGCTATGAATCGGATCTA 57.239 36.000 0.00 0.00 0.00 1.98
4560 4871 3.502857 GGATCTATTAGGGACCGGGGTTA 60.503 52.174 6.32 0.00 0.00 2.85
4621 4934 4.340950 TGATGACTTTGGGTCTTTTTCCAC 59.659 41.667 0.00 0.00 44.74 4.02
4627 4940 5.045942 ACTTTGGGTCTTTTTCCACACAAAT 60.046 36.000 0.20 0.00 43.32 2.32
4633 4946 6.208599 GGGTCTTTTTCCACACAAATATGAGA 59.791 38.462 0.00 0.00 0.00 3.27
4635 4948 6.797033 GTCTTTTTCCACACAAATATGAGACG 59.203 38.462 0.00 0.00 0.00 4.18
4682 4995 2.499205 CACTTCCTATCGGCGCCA 59.501 61.111 28.98 14.46 0.00 5.69
4760 5080 1.781555 CTTAGCGTTGCACTGTCGG 59.218 57.895 0.00 0.00 0.00 4.79
4792 5112 1.765230 ATCCTCGGTGTAGTCCTGAC 58.235 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.672409 CTGAAACTTTGCCTCGACTTTTT 58.328 39.130 0.00 0.00 0.00 1.94
84 85 7.277539 CGAACCCATTTTATACACATGCAAAAT 59.722 33.333 0.00 0.00 32.29 1.82
85 86 6.587990 CGAACCCATTTTATACACATGCAAAA 59.412 34.615 0.00 0.00 0.00 2.44
86 87 6.096036 CGAACCCATTTTATACACATGCAAA 58.904 36.000 0.00 0.00 0.00 3.68
88 89 4.702612 ACGAACCCATTTTATACACATGCA 59.297 37.500 0.00 0.00 0.00 3.96
89 90 5.243426 ACGAACCCATTTTATACACATGC 57.757 39.130 0.00 0.00 0.00 4.06
90 91 5.588648 AGGACGAACCCATTTTATACACATG 59.411 40.000 0.00 0.00 40.05 3.21
93 94 7.797038 AATAGGACGAACCCATTTTATACAC 57.203 36.000 0.00 0.00 40.05 2.90
97 103 6.428295 TGGAAATAGGACGAACCCATTTTAT 58.572 36.000 9.74 0.00 39.38 1.40
162 169 1.908483 GGGAGGTTTCGCCAGAGAT 59.092 57.895 0.00 0.00 40.61 2.75
316 323 4.507916 CGAGGAGGCCGAGGAGGA 62.508 72.222 0.00 0.00 45.00 3.71
317 324 4.824515 ACGAGGAGGCCGAGGAGG 62.825 72.222 0.00 0.00 44.97 4.30
318 325 3.213402 GACGAGGAGGCCGAGGAG 61.213 72.222 0.00 0.00 0.00 3.69
319 326 4.816984 GGACGAGGAGGCCGAGGA 62.817 72.222 0.00 0.00 38.99 3.71
989 1001 1.072331 AGGATCCCATCGAAATTCGGG 59.928 52.381 15.76 9.44 40.88 5.14
990 1002 2.550830 AGGATCCCATCGAAATTCGG 57.449 50.000 15.76 0.00 40.88 4.30
991 1003 2.808543 GGAAGGATCCCATCGAAATTCG 59.191 50.000 8.55 9.38 40.10 3.34
992 1004 2.808543 CGGAAGGATCCCATCGAAATTC 59.191 50.000 8.55 2.75 43.37 2.17
1126 1138 3.423645 GCTAGCTAACTCAAACAAGTGCG 60.424 47.826 7.70 0.00 0.00 5.34
1153 1169 1.199097 CAACCCATACGGCAAGACAAC 59.801 52.381 0.00 0.00 33.26 3.32
1162 1178 0.675522 AAGAACGCCAACCCATACGG 60.676 55.000 0.00 0.00 37.81 4.02
1165 1181 0.391927 CCGAAGAACGCCAACCCATA 60.392 55.000 0.00 0.00 41.07 2.74
1217 1236 2.026822 GCTCCCTGGAGAAGACATCAAA 60.027 50.000 17.38 0.00 44.53 2.69
1223 1242 2.185608 GCGCTCCCTGGAGAAGAC 59.814 66.667 17.38 0.00 44.53 3.01
1249 1268 2.033550 CAGATCCACCTGTAGCTACGTC 59.966 54.545 18.74 7.98 0.00 4.34
1276 1295 4.373116 TTCTTTCGAGGCGGCGCT 62.373 61.111 32.30 17.73 0.00 5.92
1362 1381 1.772063 GCGGTGTCTGCGTTGTTTCT 61.772 55.000 0.00 0.00 0.00 2.52
1437 1456 2.032860 ATGGTGGCGGAGGAGAATCG 62.033 60.000 0.00 0.00 34.37 3.34
1467 1486 1.210722 CCTTTCTGCCCCTTACTCTCC 59.789 57.143 0.00 0.00 0.00 3.71
1584 1603 1.460273 TTGCGGGCTTCTTGTTTCCC 61.460 55.000 0.00 0.00 35.42 3.97
1644 1663 5.649782 ATCCTTCAATTGAACATGTGTCC 57.350 39.130 16.91 0.00 0.00 4.02
1717 1736 5.032863 CAGTGACTTGAAGCTTCAACTTTG 58.967 41.667 32.86 25.43 41.88 2.77
1721 1740 3.873952 AGTCAGTGACTTGAAGCTTCAAC 59.126 43.478 32.86 24.82 40.28 3.18
1775 1794 4.410099 TGGAGATTGAAGCCAGAAACAAT 58.590 39.130 0.00 0.00 35.99 2.71
1783 1802 2.618816 GGTGACATGGAGATTGAAGCCA 60.619 50.000 0.00 0.00 35.91 4.75
1999 2020 7.667043 ATCTGTTCTAAATAAAAGCACACGA 57.333 32.000 0.00 0.00 0.00 4.35
2032 2054 3.690139 AGATACCATAGACCGCAGTATCG 59.310 47.826 0.00 0.00 42.55 2.92
2035 2057 8.818622 AAATATAGATACCATAGACCGCAGTA 57.181 34.615 0.00 0.00 0.00 2.74
2038 2060 8.584063 TGTAAATATAGATACCATAGACCGCA 57.416 34.615 0.00 0.00 0.00 5.69
2041 2063 9.804758 GTGCTGTAAATATAGATACCATAGACC 57.195 37.037 0.00 0.00 0.00 3.85
2050 2072 8.956533 TTGTGCTTGTGCTGTAAATATAGATA 57.043 30.769 0.00 0.00 40.48 1.98
2059 2081 5.995282 AGTATTACTTGTGCTTGTGCTGTAA 59.005 36.000 0.00 0.00 40.48 2.41
2060 2082 5.408299 CAGTATTACTTGTGCTTGTGCTGTA 59.592 40.000 0.00 0.00 40.48 2.74
2061 2083 4.214119 CAGTATTACTTGTGCTTGTGCTGT 59.786 41.667 0.00 0.00 40.48 4.40
2062 2084 4.452114 TCAGTATTACTTGTGCTTGTGCTG 59.548 41.667 0.00 0.00 40.48 4.41
2063 2085 4.452455 GTCAGTATTACTTGTGCTTGTGCT 59.548 41.667 0.00 0.00 40.48 4.40
2064 2086 4.213270 TGTCAGTATTACTTGTGCTTGTGC 59.787 41.667 0.00 0.00 40.20 4.57
2065 2087 5.922739 TGTCAGTATTACTTGTGCTTGTG 57.077 39.130 0.00 0.00 0.00 3.33
2066 2088 8.260818 AGATATGTCAGTATTACTTGTGCTTGT 58.739 33.333 0.00 0.00 0.00 3.16
2067 2089 8.654230 AGATATGTCAGTATTACTTGTGCTTG 57.346 34.615 0.00 0.00 0.00 4.01
2068 2090 9.319143 GAAGATATGTCAGTATTACTTGTGCTT 57.681 33.333 0.00 0.00 0.00 3.91
2104 2126 9.699410 TTTCTTGATTGGGTAATTCATGATAGT 57.301 29.630 0.00 0.00 0.00 2.12
2106 2128 9.699410 ACTTTCTTGATTGGGTAATTCATGATA 57.301 29.630 0.00 0.00 0.00 2.15
2107 2129 8.599624 ACTTTCTTGATTGGGTAATTCATGAT 57.400 30.769 0.00 0.00 0.00 2.45
2108 2130 7.669304 TGACTTTCTTGATTGGGTAATTCATGA 59.331 33.333 0.00 0.00 0.00 3.07
2109 2131 7.829725 TGACTTTCTTGATTGGGTAATTCATG 58.170 34.615 0.00 0.00 0.00 3.07
2110 2132 8.599624 ATGACTTTCTTGATTGGGTAATTCAT 57.400 30.769 0.00 0.00 0.00 2.57
2111 2133 9.527157 TTATGACTTTCTTGATTGGGTAATTCA 57.473 29.630 0.00 0.00 0.00 2.57
2113 2135 8.470002 GCTTATGACTTTCTTGATTGGGTAATT 58.530 33.333 0.00 0.00 0.00 1.40
2114 2136 7.836183 AGCTTATGACTTTCTTGATTGGGTAAT 59.164 33.333 0.00 0.00 0.00 1.89
2115 2137 7.175104 AGCTTATGACTTTCTTGATTGGGTAA 58.825 34.615 0.00 0.00 0.00 2.85
2116 2138 6.721318 AGCTTATGACTTTCTTGATTGGGTA 58.279 36.000 0.00 0.00 0.00 3.69
2117 2139 5.574188 AGCTTATGACTTTCTTGATTGGGT 58.426 37.500 0.00 0.00 0.00 4.51
2118 2140 6.071728 ACAAGCTTATGACTTTCTTGATTGGG 60.072 38.462 0.00 0.00 37.96 4.12
2119 2141 6.917533 ACAAGCTTATGACTTTCTTGATTGG 58.082 36.000 0.00 0.00 37.96 3.16
2120 2142 7.814642 AGACAAGCTTATGACTTTCTTGATTG 58.185 34.615 0.00 0.00 37.96 2.67
2121 2143 7.992754 AGACAAGCTTATGACTTTCTTGATT 57.007 32.000 0.00 0.00 37.96 2.57
2122 2144 7.663081 TGAAGACAAGCTTATGACTTTCTTGAT 59.337 33.333 0.00 0.00 35.87 2.57
2123 2145 6.992123 TGAAGACAAGCTTATGACTTTCTTGA 59.008 34.615 0.00 0.00 35.87 3.02
2124 2146 7.172190 TCTGAAGACAAGCTTATGACTTTCTTG 59.828 37.037 0.00 0.00 35.87 3.02
2125 2147 7.220030 TCTGAAGACAAGCTTATGACTTTCTT 58.780 34.615 0.00 0.00 35.87 2.52
2126 2148 6.763355 TCTGAAGACAAGCTTATGACTTTCT 58.237 36.000 0.00 0.00 35.87 2.52
2127 2149 7.172361 AGTTCTGAAGACAAGCTTATGACTTTC 59.828 37.037 0.00 0.00 35.87 2.62
2128 2150 6.995091 AGTTCTGAAGACAAGCTTATGACTTT 59.005 34.615 0.00 0.00 35.87 2.66
2129 2151 6.529220 AGTTCTGAAGACAAGCTTATGACTT 58.471 36.000 0.00 0.05 37.87 3.01
2130 2152 6.107901 AGTTCTGAAGACAAGCTTATGACT 57.892 37.500 0.00 0.00 36.83 3.41
2131 2153 6.868864 TGTAGTTCTGAAGACAAGCTTATGAC 59.131 38.462 0.00 0.00 36.83 3.06
2132 2154 6.993079 TGTAGTTCTGAAGACAAGCTTATGA 58.007 36.000 0.00 0.00 36.83 2.15
2133 2155 7.840342 ATGTAGTTCTGAAGACAAGCTTATG 57.160 36.000 0.00 0.00 36.83 1.90
2134 2156 9.757227 GATATGTAGTTCTGAAGACAAGCTTAT 57.243 33.333 0.00 0.00 36.83 1.73
2135 2157 8.972127 AGATATGTAGTTCTGAAGACAAGCTTA 58.028 33.333 0.00 0.00 36.83 3.09
2136 2158 7.846066 AGATATGTAGTTCTGAAGACAAGCTT 58.154 34.615 8.62 0.00 40.25 3.74
2137 2159 7.416964 AGATATGTAGTTCTGAAGACAAGCT 57.583 36.000 8.62 5.08 0.00 3.74
2138 2160 9.587772 TTAAGATATGTAGTTCTGAAGACAAGC 57.412 33.333 8.62 3.43 0.00 4.01
2148 2170 9.790389 CGACTTCAACTTAAGATATGTAGTTCT 57.210 33.333 10.09 0.00 0.00 3.01
2149 2171 9.570488 ACGACTTCAACTTAAGATATGTAGTTC 57.430 33.333 10.09 7.67 0.00 3.01
2150 2172 9.570488 GACGACTTCAACTTAAGATATGTAGTT 57.430 33.333 10.09 1.53 0.00 2.24
2151 2173 7.909121 CGACGACTTCAACTTAAGATATGTAGT 59.091 37.037 10.09 13.05 0.00 2.73
2152 2174 8.121086 TCGACGACTTCAACTTAAGATATGTAG 58.879 37.037 10.09 10.27 0.00 2.74
2153 2175 7.977904 TCGACGACTTCAACTTAAGATATGTA 58.022 34.615 10.09 0.00 0.00 2.29
2154 2176 6.849502 TCGACGACTTCAACTTAAGATATGT 58.150 36.000 10.09 2.55 0.00 2.29
2155 2177 7.736031 TTCGACGACTTCAACTTAAGATATG 57.264 36.000 10.09 5.49 0.00 1.78
2156 2178 8.928270 ATTTCGACGACTTCAACTTAAGATAT 57.072 30.769 10.09 0.00 0.00 1.63
2157 2179 8.752766 AATTTCGACGACTTCAACTTAAGATA 57.247 30.769 10.09 0.00 0.00 1.98
2158 2180 7.653767 AATTTCGACGACTTCAACTTAAGAT 57.346 32.000 10.09 0.00 0.00 2.40
2159 2181 7.473027 AAATTTCGACGACTTCAACTTAAGA 57.527 32.000 10.09 0.00 0.00 2.10
2160 2182 7.849026 TGAAAATTTCGACGACTTCAACTTAAG 59.151 33.333 0.00 0.00 0.00 1.85
2161 2183 7.686519 TGAAAATTTCGACGACTTCAACTTAA 58.313 30.769 0.00 0.00 0.00 1.85
2162 2184 7.236674 TGAAAATTTCGACGACTTCAACTTA 57.763 32.000 0.00 0.00 0.00 2.24
2163 2185 6.114221 TGAAAATTTCGACGACTTCAACTT 57.886 33.333 0.00 0.00 0.00 2.66
2164 2186 5.728351 TGAAAATTTCGACGACTTCAACT 57.272 34.783 0.00 0.00 0.00 3.16
2165 2187 6.189567 TCTTGAAAATTTCGACGACTTCAAC 58.810 36.000 14.66 2.11 31.46 3.18
2166 2188 6.352682 TCTTGAAAATTTCGACGACTTCAA 57.647 33.333 16.43 16.43 33.19 2.69
2167 2189 5.977171 TCTTGAAAATTTCGACGACTTCA 57.023 34.783 0.00 2.04 0.00 3.02
2168 2190 7.837898 AAATCTTGAAAATTTCGACGACTTC 57.162 32.000 0.00 0.00 0.00 3.01
2169 2191 9.166126 GTAAAATCTTGAAAATTTCGACGACTT 57.834 29.630 0.00 0.00 0.00 3.01
2170 2192 8.557029 AGTAAAATCTTGAAAATTTCGACGACT 58.443 29.630 0.00 0.00 0.00 4.18
2171 2193 8.709496 AGTAAAATCTTGAAAATTTCGACGAC 57.291 30.769 0.00 0.00 0.00 4.34
2172 2194 8.013378 GGAGTAAAATCTTGAAAATTTCGACGA 58.987 33.333 0.00 0.00 0.00 4.20
2173 2195 7.801315 TGGAGTAAAATCTTGAAAATTTCGACG 59.199 33.333 0.97 0.00 0.00 5.12
2174 2196 9.626045 ATGGAGTAAAATCTTGAAAATTTCGAC 57.374 29.630 0.97 0.00 0.00 4.20
2203 2225 8.700973 GGTGGGTTGAACCATTGTTTTATATAT 58.299 33.333 17.27 0.00 43.59 0.86
2204 2226 7.674348 TGGTGGGTTGAACCATTGTTTTATATA 59.326 33.333 17.27 0.00 42.82 0.86
2205 2227 6.498651 TGGTGGGTTGAACCATTGTTTTATAT 59.501 34.615 17.27 0.00 42.82 0.86
2206 2228 5.839063 TGGTGGGTTGAACCATTGTTTTATA 59.161 36.000 17.27 0.00 42.82 0.98
2207 2229 4.656112 TGGTGGGTTGAACCATTGTTTTAT 59.344 37.500 17.27 0.00 42.82 1.40
2208 2230 4.030913 TGGTGGGTTGAACCATTGTTTTA 58.969 39.130 17.27 0.00 42.82 1.52
2209 2231 2.840651 TGGTGGGTTGAACCATTGTTTT 59.159 40.909 17.27 0.00 42.82 2.43
2210 2232 2.472029 TGGTGGGTTGAACCATTGTTT 58.528 42.857 17.27 0.00 42.82 2.83
2211 2233 2.166907 TGGTGGGTTGAACCATTGTT 57.833 45.000 17.27 0.00 42.82 2.83
2212 2234 3.935371 TGGTGGGTTGAACCATTGT 57.065 47.368 17.27 0.00 42.82 2.71
2217 2239 0.966179 GGTTGATGGTGGGTTGAACC 59.034 55.000 5.62 5.62 37.60 3.62
2218 2240 0.596082 CGGTTGATGGTGGGTTGAAC 59.404 55.000 0.00 0.00 0.00 3.18
2219 2241 0.474614 TCGGTTGATGGTGGGTTGAA 59.525 50.000 0.00 0.00 0.00 2.69
2220 2242 0.036164 CTCGGTTGATGGTGGGTTGA 59.964 55.000 0.00 0.00 0.00 3.18
2221 2243 0.960364 CCTCGGTTGATGGTGGGTTG 60.960 60.000 0.00 0.00 0.00 3.77
2222 2244 1.378762 CCTCGGTTGATGGTGGGTT 59.621 57.895 0.00 0.00 0.00 4.11
2223 2245 1.838073 GACCTCGGTTGATGGTGGGT 61.838 60.000 0.00 0.00 33.74 4.51
2224 2246 1.078426 GACCTCGGTTGATGGTGGG 60.078 63.158 0.00 0.00 33.74 4.61
2225 2247 1.078426 GGACCTCGGTTGATGGTGG 60.078 63.158 0.00 0.00 33.74 4.61
2226 2248 0.673644 GTGGACCTCGGTTGATGGTG 60.674 60.000 0.00 0.00 33.74 4.17
2227 2249 1.125093 TGTGGACCTCGGTTGATGGT 61.125 55.000 0.00 0.00 36.70 3.55
2228 2250 0.036164 TTGTGGACCTCGGTTGATGG 59.964 55.000 0.00 0.00 0.00 3.51
2229 2251 1.001974 TCTTGTGGACCTCGGTTGATG 59.998 52.381 0.00 0.00 0.00 3.07
2230 2252 1.348064 TCTTGTGGACCTCGGTTGAT 58.652 50.000 0.00 0.00 0.00 2.57
2231 2253 1.001974 CATCTTGTGGACCTCGGTTGA 59.998 52.381 0.00 0.00 0.00 3.18
2232 2254 1.442769 CATCTTGTGGACCTCGGTTG 58.557 55.000 0.00 0.00 0.00 3.77
2233 2255 3.935993 CATCTTGTGGACCTCGGTT 57.064 52.632 0.00 0.00 0.00 4.44
2246 2268 6.294731 GCATTTACAAAGGACAAGACCATCTT 60.295 38.462 0.00 0.00 37.14 2.40
2247 2269 5.183904 GCATTTACAAAGGACAAGACCATCT 59.816 40.000 0.00 0.00 0.00 2.90
2248 2270 5.048083 TGCATTTACAAAGGACAAGACCATC 60.048 40.000 0.00 0.00 0.00 3.51
2249 2271 4.832266 TGCATTTACAAAGGACAAGACCAT 59.168 37.500 0.00 0.00 0.00 3.55
2250 2272 4.211125 TGCATTTACAAAGGACAAGACCA 58.789 39.130 0.00 0.00 0.00 4.02
2251 2273 4.846779 TGCATTTACAAAGGACAAGACC 57.153 40.909 0.00 0.00 0.00 3.85
2252 2274 8.986477 ATTAATGCATTTACAAAGGACAAGAC 57.014 30.769 18.75 0.00 0.00 3.01
2253 2275 9.421806 CAATTAATGCATTTACAAAGGACAAGA 57.578 29.630 18.75 0.00 0.00 3.02
2254 2276 9.206870 ACAATTAATGCATTTACAAAGGACAAG 57.793 29.630 18.75 0.00 0.00 3.16
2256 2278 9.853555 CTACAATTAATGCATTTACAAAGGACA 57.146 29.630 18.75 0.00 0.00 4.02
2257 2279 9.855021 ACTACAATTAATGCATTTACAAAGGAC 57.145 29.630 18.75 0.00 0.00 3.85
2279 2301 9.953697 CCACATAGAAGATAGAAACTGTACTAC 57.046 37.037 0.00 0.00 0.00 2.73
2280 2302 9.916360 TCCACATAGAAGATAGAAACTGTACTA 57.084 33.333 0.00 0.00 0.00 1.82
2281 2303 8.824756 TCCACATAGAAGATAGAAACTGTACT 57.175 34.615 0.00 0.00 0.00 2.73
2287 2309 7.987458 TGGACAATCCACATAGAAGATAGAAAC 59.013 37.037 0.00 0.00 42.67 2.78
2305 2327 7.830739 ACCACTTAAGATTCAATTGGACAATC 58.169 34.615 10.09 7.81 31.87 2.67
2314 2336 6.018433 AGGCCATACCACTTAAGATTCAAT 57.982 37.500 10.09 0.00 43.14 2.57
2330 2353 6.266131 AGAATCATAACAAGGAAGGCCATA 57.734 37.500 5.01 0.00 36.29 2.74
2354 2377 4.666412 TCTCCAAATGGACCATGGTTAA 57.334 40.909 20.85 11.02 39.78 2.01
2359 2382 4.946157 GCCTATATCTCCAAATGGACCATG 59.054 45.833 8.02 0.00 39.78 3.66
2374 2397 3.636764 CCCAAACAAACAGGGCCTATATC 59.363 47.826 5.28 0.00 35.44 1.63
2382 2405 2.287769 CAAAAGCCCAAACAAACAGGG 58.712 47.619 0.00 0.00 45.68 4.45
2383 2406 1.670295 GCAAAAGCCCAAACAAACAGG 59.330 47.619 0.00 0.00 0.00 4.00
2384 2407 2.631267 AGCAAAAGCCCAAACAAACAG 58.369 42.857 0.00 0.00 0.00 3.16
2385 2408 2.777832 AGCAAAAGCCCAAACAAACA 57.222 40.000 0.00 0.00 0.00 2.83
2386 2409 3.063861 CAGAAGCAAAAGCCCAAACAAAC 59.936 43.478 0.00 0.00 0.00 2.93
2387 2410 3.269178 CAGAAGCAAAAGCCCAAACAAA 58.731 40.909 0.00 0.00 0.00 2.83
2388 2411 2.903798 CAGAAGCAAAAGCCCAAACAA 58.096 42.857 0.00 0.00 0.00 2.83
2389 2412 1.473080 GCAGAAGCAAAAGCCCAAACA 60.473 47.619 0.00 0.00 41.58 2.83
2390 2413 1.202568 AGCAGAAGCAAAAGCCCAAAC 60.203 47.619 0.00 0.00 45.49 2.93
2391 2414 1.122227 AGCAGAAGCAAAAGCCCAAA 58.878 45.000 0.00 0.00 45.49 3.28
2392 2415 1.122227 AAGCAGAAGCAAAAGCCCAA 58.878 45.000 0.00 0.00 45.49 4.12
2393 2416 1.122227 AAAGCAGAAGCAAAAGCCCA 58.878 45.000 0.00 0.00 45.49 5.36
2394 2417 1.869132 CAAAAGCAGAAGCAAAAGCCC 59.131 47.619 0.00 0.00 45.49 5.19
2395 2418 1.262417 GCAAAAGCAGAAGCAAAAGCC 59.738 47.619 0.00 0.00 45.49 4.35
2396 2419 1.935199 TGCAAAAGCAGAAGCAAAAGC 59.065 42.857 0.00 0.00 45.49 3.51
2397 2420 3.854286 CTGCAAAAGCAGAAGCAAAAG 57.146 42.857 11.82 0.00 45.49 2.27
2428 2451 4.570369 GCCAAAGTAGAAAAGCTGCAAAAA 59.430 37.500 1.02 0.00 0.00 1.94
2429 2452 4.119136 GCCAAAGTAGAAAAGCTGCAAAA 58.881 39.130 1.02 0.00 0.00 2.44
2430 2453 3.492482 GGCCAAAGTAGAAAAGCTGCAAA 60.492 43.478 0.00 0.00 0.00 3.68
2431 2454 2.035832 GGCCAAAGTAGAAAAGCTGCAA 59.964 45.455 0.00 0.00 0.00 4.08
2432 2455 1.613437 GGCCAAAGTAGAAAAGCTGCA 59.387 47.619 0.00 0.00 0.00 4.41
2433 2456 1.613437 TGGCCAAAGTAGAAAAGCTGC 59.387 47.619 0.61 0.00 0.00 5.25
2434 2457 4.320608 TTTGGCCAAAGTAGAAAAGCTG 57.679 40.909 27.13 0.00 0.00 4.24
2435 2458 5.351948 TTTTTGGCCAAAGTAGAAAAGCT 57.648 34.783 28.79 0.00 0.00 3.74
2436 2459 4.024893 GCTTTTTGGCCAAAGTAGAAAAGC 60.025 41.667 31.77 31.77 46.24 3.51
2437 2460 5.657470 GCTTTTTGGCCAAAGTAGAAAAG 57.343 39.130 31.16 27.89 36.32 2.27
2450 2473 1.599071 GAGCTTTTGTGGCTTTTTGGC 59.401 47.619 0.00 0.00 40.40 4.52
2451 2474 2.158914 AGGAGCTTTTGTGGCTTTTTGG 60.159 45.455 0.00 0.00 40.40 3.28
2452 2475 3.183793 AGGAGCTTTTGTGGCTTTTTG 57.816 42.857 0.00 0.00 40.40 2.44
2453 2476 5.351948 TTTAGGAGCTTTTGTGGCTTTTT 57.648 34.783 0.00 0.00 40.40 1.94
2454 2477 5.551305 ATTTAGGAGCTTTTGTGGCTTTT 57.449 34.783 0.00 0.00 40.40 2.27
2455 2478 5.185828 CCTATTTAGGAGCTTTTGTGGCTTT 59.814 40.000 0.00 0.00 46.63 3.51
2456 2479 4.706962 CCTATTTAGGAGCTTTTGTGGCTT 59.293 41.667 0.00 0.00 46.63 4.35
2457 2480 4.263949 ACCTATTTAGGAGCTTTTGTGGCT 60.264 41.667 10.61 0.00 46.63 4.75
2458 2481 4.017126 ACCTATTTAGGAGCTTTTGTGGC 58.983 43.478 10.61 0.00 46.63 5.01
2459 2482 5.567138 CACCTATTTAGGAGCTTTTGTGG 57.433 43.478 10.61 0.00 46.63 4.17
2482 2505 5.816777 TCAAAAACCATCAAAGCTCCAAAAG 59.183 36.000 0.00 0.00 0.00 2.27
2483 2506 5.584251 GTCAAAAACCATCAAAGCTCCAAAA 59.416 36.000 0.00 0.00 0.00 2.44
2484 2507 5.115480 GTCAAAAACCATCAAAGCTCCAAA 58.885 37.500 0.00 0.00 0.00 3.28
2485 2508 4.692228 GTCAAAAACCATCAAAGCTCCAA 58.308 39.130 0.00 0.00 0.00 3.53
2486 2509 3.243367 CGTCAAAAACCATCAAAGCTCCA 60.243 43.478 0.00 0.00 0.00 3.86
2487 2510 3.004315 TCGTCAAAAACCATCAAAGCTCC 59.996 43.478 0.00 0.00 0.00 4.70
2488 2511 4.223320 TCGTCAAAAACCATCAAAGCTC 57.777 40.909 0.00 0.00 0.00 4.09
2489 2512 4.647424 TTCGTCAAAAACCATCAAAGCT 57.353 36.364 0.00 0.00 0.00 3.74
2490 2513 4.981674 TGATTCGTCAAAAACCATCAAAGC 59.018 37.500 0.00 0.00 0.00 3.51
2491 2514 7.642071 ATTGATTCGTCAAAAACCATCAAAG 57.358 32.000 0.00 0.00 37.49 2.77
2494 2517 9.781834 GTTATATTGATTCGTCAAAAACCATCA 57.218 29.630 0.00 0.00 32.94 3.07
2495 2518 9.781834 TGTTATATTGATTCGTCAAAAACCATC 57.218 29.630 0.00 0.00 32.94 3.51
2526 2549 9.802468 TAGAGCTTTTCTGGCTTTTGGAGCTAA 62.802 40.741 0.00 0.00 41.71 3.09
2527 2550 8.434092 TAGAGCTTTTCTGGCTTTTGGAGCTA 62.434 42.308 0.00 0.00 43.04 3.32
2528 2551 7.734434 TAGAGCTTTTCTGGCTTTTGGAGCT 62.734 44.000 0.00 0.00 43.04 4.09
2529 2552 5.581867 TAGAGCTTTTCTGGCTTTTGGAGC 61.582 45.833 0.00 0.00 42.89 4.70
2530 2553 2.889678 AGAGCTTTTCTGGCTTTTGGAG 59.110 45.455 0.00 0.00 40.40 3.86
2531 2554 2.949447 AGAGCTTTTCTGGCTTTTGGA 58.051 42.857 0.00 0.00 40.40 3.53
2532 2555 4.853924 TTAGAGCTTTTCTGGCTTTTGG 57.146 40.909 0.00 0.00 40.40 3.28
2533 2556 6.760161 CTTTTAGAGCTTTTCTGGCTTTTG 57.240 37.500 0.00 0.00 40.40 2.44
2542 2565 8.184848 CCTAAATAGGTGCTTTTAGAGCTTTTC 58.815 37.037 0.00 0.00 42.37 2.29
2543 2566 7.888546 TCCTAAATAGGTGCTTTTAGAGCTTTT 59.111 33.333 6.39 0.00 45.80 2.27
2544 2567 7.402862 TCCTAAATAGGTGCTTTTAGAGCTTT 58.597 34.615 6.39 0.00 45.80 3.51
2545 2568 6.958767 TCCTAAATAGGTGCTTTTAGAGCTT 58.041 36.000 6.39 0.00 45.80 3.74
2546 2569 6.561519 TCCTAAATAGGTGCTTTTAGAGCT 57.438 37.500 6.39 0.00 45.80 4.09
2547 2570 6.852858 CTCCTAAATAGGTGCTTTTAGAGC 57.147 41.667 6.39 0.00 45.81 4.09
2557 2580 6.064717 AGCCATAAAAGCTCCTAAATAGGTG 58.935 40.000 6.39 5.41 44.02 4.00
2558 2581 6.267492 AGCCATAAAAGCTCCTAAATAGGT 57.733 37.500 6.39 0.00 44.02 3.08
2559 2582 7.588497 AAAGCCATAAAAGCTCCTAAATAGG 57.412 36.000 0.00 0.00 40.49 2.57
2560 2583 9.305925 CAAAAAGCCATAAAAGCTCCTAAATAG 57.694 33.333 0.00 0.00 40.49 1.73
2561 2584 8.257306 CCAAAAAGCCATAAAAGCTCCTAAATA 58.743 33.333 0.00 0.00 40.49 1.40
2562 2585 7.105588 CCAAAAAGCCATAAAAGCTCCTAAAT 58.894 34.615 0.00 0.00 40.49 1.40
2563 2586 6.463360 CCAAAAAGCCATAAAAGCTCCTAAA 58.537 36.000 0.00 0.00 40.49 1.85
2564 2587 5.568624 GCCAAAAAGCCATAAAAGCTCCTAA 60.569 40.000 0.00 0.00 40.49 2.69
2565 2588 4.081697 GCCAAAAAGCCATAAAAGCTCCTA 60.082 41.667 0.00 0.00 40.49 2.94
2566 2589 3.306989 GCCAAAAAGCCATAAAAGCTCCT 60.307 43.478 0.00 0.00 40.49 3.69
2567 2590 3.002791 GCCAAAAAGCCATAAAAGCTCC 58.997 45.455 0.00 0.00 40.49 4.70
2579 2602 4.661125 CTTTTTCACTTTGGCCAAAAAGC 58.339 39.130 29.93 0.00 40.20 3.51
2580 2603 4.395854 AGCTTTTTCACTTTGGCCAAAAAG 59.604 37.500 29.93 26.72 43.84 2.27
2581 2604 4.331108 AGCTTTTTCACTTTGGCCAAAAA 58.669 34.783 29.93 19.41 0.00 1.94
2582 2605 3.949132 AGCTTTTTCACTTTGGCCAAAA 58.051 36.364 29.93 14.43 0.00 2.44
2583 2606 3.625649 AGCTTTTTCACTTTGGCCAAA 57.374 38.095 28.65 28.65 0.00 3.28
2584 2607 4.744795 TTAGCTTTTTCACTTTGGCCAA 57.255 36.364 16.05 16.05 0.00 4.52
2585 2608 4.692228 CTTTAGCTTTTTCACTTTGGCCA 58.308 39.130 0.00 0.00 0.00 5.36
2586 2609 3.494626 GCTTTAGCTTTTTCACTTTGGCC 59.505 43.478 0.00 0.00 38.21 5.36
2587 2610 4.119136 TGCTTTAGCTTTTTCACTTTGGC 58.881 39.130 0.00 0.00 42.66 4.52
2588 2611 5.591099 TCTGCTTTAGCTTTTTCACTTTGG 58.409 37.500 0.00 0.00 42.66 3.28
2589 2612 6.292008 GCTTCTGCTTTAGCTTTTTCACTTTG 60.292 38.462 0.00 0.00 42.66 2.77
2590 2613 5.750547 GCTTCTGCTTTAGCTTTTTCACTTT 59.249 36.000 0.00 0.00 42.66 2.66
2591 2614 5.163519 TGCTTCTGCTTTAGCTTTTTCACTT 60.164 36.000 0.00 0.00 42.66 3.16
2592 2615 4.339247 TGCTTCTGCTTTAGCTTTTTCACT 59.661 37.500 0.00 0.00 42.66 3.41
2593 2616 4.610945 TGCTTCTGCTTTAGCTTTTTCAC 58.389 39.130 0.00 0.00 42.66 3.18
2594 2617 4.916983 TGCTTCTGCTTTAGCTTTTTCA 57.083 36.364 0.00 0.00 42.66 2.69
2595 2618 6.588348 TTTTGCTTCTGCTTTAGCTTTTTC 57.412 33.333 0.00 0.00 42.66 2.29
2596 2619 5.007039 GCTTTTGCTTCTGCTTTAGCTTTTT 59.993 36.000 0.00 0.00 43.35 1.94
2597 2620 4.509230 GCTTTTGCTTCTGCTTTAGCTTTT 59.491 37.500 0.00 0.00 43.35 2.27
2598 2621 4.053983 GCTTTTGCTTCTGCTTTAGCTTT 58.946 39.130 0.00 0.00 43.35 3.51
2599 2622 3.553715 GGCTTTTGCTTCTGCTTTAGCTT 60.554 43.478 0.00 0.00 46.54 3.74
2600 2623 2.029560 GGCTTTTGCTTCTGCTTTAGCT 60.030 45.455 3.10 0.00 46.54 3.32
2601 2624 2.332104 GGCTTTTGCTTCTGCTTTAGC 58.668 47.619 0.00 0.00 46.54 3.09
2602 2625 2.297033 TGGGCTTTTGCTTCTGCTTTAG 59.703 45.455 0.00 0.00 46.54 1.85
2603 2626 2.315176 TGGGCTTTTGCTTCTGCTTTA 58.685 42.857 0.00 0.00 46.54 1.85
2604 2627 1.122227 TGGGCTTTTGCTTCTGCTTT 58.878 45.000 0.00 0.00 46.54 3.51
2605 2628 1.122227 TTGGGCTTTTGCTTCTGCTT 58.878 45.000 0.00 0.00 46.54 3.91
2606 2629 1.122227 TTTGGGCTTTTGCTTCTGCT 58.878 45.000 0.00 0.00 46.54 4.24
2607 2630 1.220529 GTTTGGGCTTTTGCTTCTGC 58.779 50.000 0.00 0.00 46.54 4.26
2608 2631 2.600470 TGTTTGGGCTTTTGCTTCTG 57.400 45.000 0.00 0.00 46.54 3.02
2609 2632 3.270027 GTTTGTTTGGGCTTTTGCTTCT 58.730 40.909 0.00 0.00 46.54 2.85
2610 2633 3.006247 TGTTTGTTTGGGCTTTTGCTTC 58.994 40.909 0.00 0.00 46.54 3.86
2611 2634 3.009026 CTGTTTGTTTGGGCTTTTGCTT 58.991 40.909 0.00 0.00 46.54 3.91
2612 2635 2.631267 CTGTTTGTTTGGGCTTTTGCT 58.369 42.857 0.00 0.00 46.54 3.91
2613 2636 1.670295 CCTGTTTGTTTGGGCTTTTGC 59.330 47.619 0.00 0.00 46.64 3.68
2614 2637 2.287769 CCCTGTTTGTTTGGGCTTTTG 58.712 47.619 0.00 0.00 33.88 2.44
2615 2638 2.708216 CCCTGTTTGTTTGGGCTTTT 57.292 45.000 0.00 0.00 33.88 2.27
2620 2643 1.550072 CTATGGCCCTGTTTGTTTGGG 59.450 52.381 0.00 0.00 43.62 4.12
2621 2644 2.029110 CACTATGGCCCTGTTTGTTTGG 60.029 50.000 0.00 0.00 0.00 3.28
2622 2645 2.890311 TCACTATGGCCCTGTTTGTTTG 59.110 45.455 0.00 0.00 0.00 2.93
2623 2646 3.157087 CTCACTATGGCCCTGTTTGTTT 58.843 45.455 0.00 0.00 0.00 2.83
2624 2647 2.375174 TCTCACTATGGCCCTGTTTGTT 59.625 45.455 0.00 0.00 0.00 2.83
2625 2648 1.985159 TCTCACTATGGCCCTGTTTGT 59.015 47.619 0.00 0.00 0.00 2.83
2626 2649 2.787473 TCTCACTATGGCCCTGTTTG 57.213 50.000 0.00 0.00 0.00 2.93
2627 2650 2.092212 CCATCTCACTATGGCCCTGTTT 60.092 50.000 0.00 0.00 40.07 2.83
2628 2651 1.492176 CCATCTCACTATGGCCCTGTT 59.508 52.381 0.00 0.00 40.07 3.16
2629 2652 1.135094 CCATCTCACTATGGCCCTGT 58.865 55.000 0.00 0.00 40.07 4.00
2636 2659 6.127619 TGTCAGTACTTCACCATCTCACTATG 60.128 42.308 0.00 0.00 0.00 2.23
2637 2660 5.952347 TGTCAGTACTTCACCATCTCACTAT 59.048 40.000 0.00 0.00 0.00 2.12
2638 2661 5.321927 TGTCAGTACTTCACCATCTCACTA 58.678 41.667 0.00 0.00 0.00 2.74
2639 2662 4.152647 TGTCAGTACTTCACCATCTCACT 58.847 43.478 0.00 0.00 0.00 3.41
2640 2663 4.521130 TGTCAGTACTTCACCATCTCAC 57.479 45.455 0.00 0.00 0.00 3.51
2689 2714 9.223099 CCTCTGAAATTTTTATGCAGGAAAAAT 57.777 29.630 20.90 20.90 44.46 1.82
2695 2723 4.161001 AGCCCTCTGAAATTTTTATGCAGG 59.839 41.667 0.00 0.00 0.00 4.85
2706 2734 8.957466 GTACTATTAAACAAAGCCCTCTGAAAT 58.043 33.333 0.00 0.00 0.00 2.17
2707 2735 7.392393 GGTACTATTAAACAAAGCCCTCTGAAA 59.608 37.037 0.00 0.00 0.00 2.69
2708 2736 6.882678 GGTACTATTAAACAAAGCCCTCTGAA 59.117 38.462 0.00 0.00 0.00 3.02
2750 2936 2.393271 AGCCAGCAACTGATGTACTC 57.607 50.000 0.00 0.00 32.44 2.59
2753 2939 3.599343 CACTAAGCCAGCAACTGATGTA 58.401 45.455 0.00 0.00 32.44 2.29
2754 2940 2.430465 CACTAAGCCAGCAACTGATGT 58.570 47.619 0.00 0.00 32.44 3.06
2755 2941 1.131883 GCACTAAGCCAGCAACTGATG 59.868 52.381 0.00 0.00 37.23 3.07
2756 2942 1.457346 GCACTAAGCCAGCAACTGAT 58.543 50.000 0.00 0.00 37.23 2.90
2757 2943 2.932663 GCACTAAGCCAGCAACTGA 58.067 52.632 0.00 0.00 37.23 3.41
2790 2977 0.253044 TCACCAGTATGCCCTGAAGC 59.747 55.000 0.00 0.00 34.23 3.86
2792 2979 2.945440 GCATTCACCAGTATGCCCTGAA 60.945 50.000 0.00 0.00 41.17 3.02
2847 3045 6.920758 TGTTTGTCAAATTACCAGCATGTTAC 59.079 34.615 0.40 0.00 0.00 2.50
2854 3052 7.151976 ACCTAATTGTTTGTCAAATTACCAGC 58.848 34.615 0.40 0.00 39.62 4.85
2876 3074 3.047877 GCTACCACGCGCAAACCT 61.048 61.111 5.73 0.00 0.00 3.50
2897 3095 8.657387 ACTATGCTATGATTTTAGCTAGGAGA 57.343 34.615 5.21 0.00 44.03 3.71
2909 3107 8.196771 GCAAGCTAGATAGACTATGCTATGATT 58.803 37.037 0.00 0.25 35.87 2.57
2910 3108 7.201902 GGCAAGCTAGATAGACTATGCTATGAT 60.202 40.741 0.00 0.00 35.87 2.45
2917 3115 6.644592 GTGAAAGGCAAGCTAGATAGACTATG 59.355 42.308 0.00 0.00 0.00 2.23
2920 3118 4.714308 AGTGAAAGGCAAGCTAGATAGACT 59.286 41.667 0.00 0.00 0.00 3.24
2987 3251 9.213777 GGGTCATTCCAGATAGTCCATATTATA 57.786 37.037 0.00 0.00 38.11 0.98
2991 3255 5.669857 AGGGTCATTCCAGATAGTCCATAT 58.330 41.667 0.00 0.00 38.11 1.78
3004 3268 3.382546 CACATGGAATTGAGGGTCATTCC 59.617 47.826 0.00 4.27 42.07 3.01
3005 3269 3.181483 GCACATGGAATTGAGGGTCATTC 60.181 47.826 0.00 0.00 0.00 2.67
3006 3270 2.762327 GCACATGGAATTGAGGGTCATT 59.238 45.455 0.00 0.00 0.00 2.57
3013 3277 3.349927 TCTCAAGGCACATGGAATTGAG 58.650 45.455 18.56 18.56 45.21 3.02
3019 3283 1.074405 AGCTTTCTCAAGGCACATGGA 59.926 47.619 0.00 0.00 0.00 3.41
3025 3289 2.867624 ACATGAAGCTTTCTCAAGGCA 58.132 42.857 0.00 0.00 0.00 4.75
3027 3291 5.192327 ACAAACATGAAGCTTTCTCAAGG 57.808 39.130 0.00 0.00 0.00 3.61
3048 3312 4.446719 CCAATTGAAGCTGCAAGAAGAAAC 59.553 41.667 13.80 0.00 34.07 2.78
3057 3321 4.339872 AAATTGTCCAATTGAAGCTGCA 57.660 36.364 7.12 0.00 40.57 4.41
3088 3352 2.678336 CGGTTTTCTGGCCAGTATTCTC 59.322 50.000 31.58 17.17 0.00 2.87
3096 3360 0.885596 CGGTTACGGTTTTCTGGCCA 60.886 55.000 4.71 4.71 36.18 5.36
3099 3363 2.032636 GTCAACGGTTACGGTTTTCTGG 60.033 50.000 5.56 0.00 46.48 3.86
3105 3369 0.102120 TGACGTCAACGGTTACGGTT 59.898 50.000 17.62 2.41 46.48 4.44
3127 3391 6.368791 TGCTTGATACTTATATCCGATGTTGC 59.631 38.462 0.00 0.00 37.04 4.17
3135 3399 7.339732 CAACGTCTGCTTGATACTTATATCC 57.660 40.000 0.00 0.00 37.04 2.59
3170 3434 6.910259 ATACCCTTTTAGATTCACCCTTCT 57.090 37.500 0.00 0.00 0.00 2.85
3171 3435 7.498239 GTGTATACCCTTTTAGATTCACCCTTC 59.502 40.741 0.00 0.00 0.00 3.46
3211 3475 8.892723 CCAAGAAGATACACATATTGCTTGTTA 58.107 33.333 0.00 0.00 28.86 2.41
3220 3484 5.472478 CAGCATGCCAAGAAGATACACATAT 59.528 40.000 15.66 0.00 0.00 1.78
3239 3504 2.040813 AGATTGACTGAACCACCAGCAT 59.959 45.455 0.00 0.00 37.68 3.79
3240 3505 1.421268 AGATTGACTGAACCACCAGCA 59.579 47.619 0.00 0.00 37.68 4.41
3241 3506 2.191128 AGATTGACTGAACCACCAGC 57.809 50.000 0.00 0.00 37.68 4.85
3312 3612 9.542462 CTGCTATAGTTTATGTTAACCTAGCAA 57.458 33.333 15.82 0.00 42.65 3.91
3313 3613 8.701895 ACTGCTATAGTTTATGTTAACCTAGCA 58.298 33.333 2.48 14.94 41.93 3.49
3314 3614 9.194271 GACTGCTATAGTTTATGTTAACCTAGC 57.806 37.037 2.48 0.00 40.53 3.42
3315 3615 9.694137 GGACTGCTATAGTTTATGTTAACCTAG 57.306 37.037 2.48 0.00 40.53 3.02
3316 3616 9.204337 TGGACTGCTATAGTTTATGTTAACCTA 57.796 33.333 2.48 0.00 40.53 3.08
3359 3659 3.485394 TGCTCAGTTCCAACATTTAGCA 58.515 40.909 0.00 0.00 36.45 3.49
3372 3672 1.265095 CGCAAGACACAATGCTCAGTT 59.735 47.619 0.00 0.00 40.39 3.16
3438 3738 3.679502 TCACAGTCGTTGCATAAGATGTG 59.320 43.478 12.94 12.94 38.46 3.21
3651 3957 2.052468 TCATCCCAGTCATCATCCCAG 58.948 52.381 0.00 0.00 0.00 4.45
3753 4059 7.292356 TCCTTGCTATTGGTTGGAGATCTATTA 59.708 37.037 0.00 0.00 0.00 0.98
3835 4141 4.508124 TCTTCTCTCGTTTCACAAGAAAGC 59.492 41.667 0.00 0.00 43.95 3.51
3851 4158 6.991531 GCCATTCAGATGAACTTATCTTCTCT 59.008 38.462 0.00 0.00 39.77 3.10
3914 4221 3.284617 CTTGTCAAGCATGGATCCATCA 58.715 45.455 24.93 15.19 33.90 3.07
3979 4286 3.499157 GTGGAACGCTATTGTACAAACCA 59.501 43.478 13.23 10.33 35.02 3.67
3994 4301 7.786114 TCGTAAACAAAATTACTAGTGGAACG 58.214 34.615 5.39 1.73 36.38 3.95
4151 4459 5.105716 GCTCAGGAGAGTAGTATTCAACACA 60.106 44.000 0.00 0.00 44.00 3.72
4175 4483 3.818773 ACGTTGTGGTTTAGAATTCAGGG 59.181 43.478 8.44 0.00 0.00 4.45
4290 4598 4.558226 AGGTCTATCAAGCATGTGTGAA 57.442 40.909 4.82 0.00 0.00 3.18
4339 4647 2.974148 CCGCTGCTTCTGCACACA 60.974 61.111 0.00 0.00 45.31 3.72
4413 4721 5.534278 TCAAATGAATACAGGTGAAGCACAA 59.466 36.000 0.00 0.00 35.86 3.33
4544 4853 0.030399 AGCTAACCCCGGTCCCTAAT 60.030 55.000 0.00 0.00 0.00 1.73
4560 4871 5.538433 ACTTCAGTCAGTTAAGAGAAGAGCT 59.462 40.000 0.00 0.00 36.78 4.09
4621 4934 9.672086 TTTAAAAAGTTCCGTCTCATATTTGTG 57.328 29.630 0.00 0.00 0.00 3.33
4633 4946 8.999220 TGTGGTTTAAATTTAAAAAGTTCCGT 57.001 26.923 21.81 0.00 34.71 4.69
4682 4995 1.811266 GCTCGACGCCATGATGTGT 60.811 57.895 0.00 0.00 0.00 3.72
4760 5080 1.712977 CGAGGATTTGCAGCTCAGCC 61.713 60.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.