Multiple sequence alignment - TraesCS1D01G299800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G299800 chr1D 100.000 5060 0 0 1 5060 398092791 398097850 0.000000e+00 9345
1 TraesCS1D01G299800 chr1D 89.589 730 63 4 970 1699 398246297 398247013 0.000000e+00 915
2 TraesCS1D01G299800 chr1D 85.604 910 62 30 767 1645 398121329 398122200 0.000000e+00 891
3 TraesCS1D01G299800 chr1D 84.731 668 74 16 970 1619 398379811 398380468 1.190000e-180 643
4 TraesCS1D01G299800 chr1D 88.550 524 51 4 4259 4774 398123333 398123855 1.200000e-175 627
5 TraesCS1D01G299800 chr1D 91.200 375 26 5 3826 4193 398122230 398122604 2.100000e-138 503
6 TraesCS1D01G299800 chr1D 93.031 287 16 3 4774 5060 290702692 290702410 2.820000e-112 416
7 TraesCS1D01G299800 chr1D 76.991 339 65 12 86 418 87906049 87905718 1.120000e-41 182
8 TraesCS1D01G299800 chr1D 77.603 317 58 11 86 396 31025014 31025323 4.020000e-41 180
9 TraesCS1D01G299800 chr3D 94.620 2156 87 14 1702 3835 437480979 437483127 0.000000e+00 3312
10 TraesCS1D01G299800 chr2D 93.931 2142 114 12 1701 3835 79276814 79278946 0.000000e+00 3221
11 TraesCS1D01G299800 chr2D 94.626 2084 97 10 1759 3832 197244152 197246230 0.000000e+00 3214
12 TraesCS1D01G299800 chr2D 93.645 2140 125 6 1696 3832 86067364 86069495 0.000000e+00 3188
13 TraesCS1D01G299800 chr2D 93.467 2143 124 13 1701 3837 531260146 531262278 0.000000e+00 3168
14 TraesCS1D01G299800 chr5D 93.826 2138 120 8 1706 3840 363541833 363543961 0.000000e+00 3206
15 TraesCS1D01G299800 chr5D 93.238 2159 123 17 1686 3839 51854213 51856353 0.000000e+00 3157
16 TraesCS1D01G299800 chr5D 88.177 406 44 4 1122 1525 409575707 409576110 9.850000e-132 481
17 TraesCS1D01G299800 chr5D 94.681 282 15 0 4774 5055 459429027 459428746 6.010000e-119 438
18 TraesCS1D01G299800 chrUn 93.087 2141 133 11 1701 3835 96047596 96049727 0.000000e+00 3120
19 TraesCS1D01G299800 chrUn 95.035 282 14 0 4774 5055 339444826 339445107 1.290000e-120 444
20 TraesCS1D01G299800 chrUn 94.681 282 15 0 4774 5055 381532340 381532621 6.010000e-119 438
21 TraesCS1D01G299800 chrUn 94.326 282 16 0 4774 5055 366103063 366103344 2.800000e-117 433
22 TraesCS1D01G299800 chr7D 92.591 2146 138 16 1701 3835 385721375 385719240 0.000000e+00 3062
23 TraesCS1D01G299800 chr7D 80.115 347 45 11 86 412 603664300 603663958 2.350000e-58 237
24 TraesCS1D01G299800 chr1A 88.313 1737 152 28 1 1706 495305544 495307260 0.000000e+00 2036
25 TraesCS1D01G299800 chr1A 88.451 736 68 7 970 1699 495320188 495320912 0.000000e+00 872
26 TraesCS1D01G299800 chr1A 84.036 664 78 16 970 1619 495332430 495333079 9.310000e-172 614
27 TraesCS1D01G299800 chr1A 89.865 296 22 3 3826 4113 495307249 495307544 1.720000e-99 374
28 TraesCS1D01G299800 chr1A 83.422 374 47 8 4154 4517 495307546 495307914 2.920000e-87 333
29 TraesCS1D01G299800 chr1B 91.582 1188 62 19 547 1706 533747380 533748557 0.000000e+00 1605
30 TraesCS1D01G299800 chr1B 89.538 650 50 5 968 1617 533759908 533760539 0.000000e+00 808
31 TraesCS1D01G299800 chr1B 85.016 634 69 15 1000 1619 533815366 533815987 5.560000e-174 621
32 TraesCS1D01G299800 chr1B 84.259 432 60 6 1 424 533746677 533747108 1.010000e-111 414
33 TraesCS1D01G299800 chr4D 94.366 284 14 1 4779 5060 464078382 464078099 7.780000e-118 435
34 TraesCS1D01G299800 chr3B 93.031 287 19 1 4774 5060 713393640 713393925 7.840000e-113 418
35 TraesCS1D01G299800 chr3B 92.388 289 19 2 4774 5060 43223026 43222739 4.720000e-110 409
36 TraesCS1D01G299800 chr6A 91.986 287 23 0 4774 5060 462273696 462273410 2.190000e-108 403
37 TraesCS1D01G299800 chr6A 83.939 330 47 6 86 413 15731312 15730987 1.370000e-80 311
38 TraesCS1D01G299800 chr5A 79.518 332 60 6 86 409 605033275 605032944 3.940000e-56 230
39 TraesCS1D01G299800 chr4B 79.734 301 46 12 86 375 599687528 599687232 2.390000e-48 204
40 TraesCS1D01G299800 chr6B 77.469 324 62 11 89 406 62656150 62655832 3.110000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G299800 chr1D 398092791 398097850 5059 False 9345.000000 9345 100.000000 1 5060 1 chr1D.!!$F2 5059
1 TraesCS1D01G299800 chr1D 398246297 398247013 716 False 915.000000 915 89.589000 970 1699 1 chr1D.!!$F3 729
2 TraesCS1D01G299800 chr1D 398121329 398123855 2526 False 673.666667 891 88.451333 767 4774 3 chr1D.!!$F5 4007
3 TraesCS1D01G299800 chr1D 398379811 398380468 657 False 643.000000 643 84.731000 970 1619 1 chr1D.!!$F4 649
4 TraesCS1D01G299800 chr3D 437480979 437483127 2148 False 3312.000000 3312 94.620000 1702 3835 1 chr3D.!!$F1 2133
5 TraesCS1D01G299800 chr2D 79276814 79278946 2132 False 3221.000000 3221 93.931000 1701 3835 1 chr2D.!!$F1 2134
6 TraesCS1D01G299800 chr2D 197244152 197246230 2078 False 3214.000000 3214 94.626000 1759 3832 1 chr2D.!!$F3 2073
7 TraesCS1D01G299800 chr2D 86067364 86069495 2131 False 3188.000000 3188 93.645000 1696 3832 1 chr2D.!!$F2 2136
8 TraesCS1D01G299800 chr2D 531260146 531262278 2132 False 3168.000000 3168 93.467000 1701 3837 1 chr2D.!!$F4 2136
9 TraesCS1D01G299800 chr5D 363541833 363543961 2128 False 3206.000000 3206 93.826000 1706 3840 1 chr5D.!!$F2 2134
10 TraesCS1D01G299800 chr5D 51854213 51856353 2140 False 3157.000000 3157 93.238000 1686 3839 1 chr5D.!!$F1 2153
11 TraesCS1D01G299800 chrUn 96047596 96049727 2131 False 3120.000000 3120 93.087000 1701 3835 1 chrUn.!!$F1 2134
12 TraesCS1D01G299800 chr7D 385719240 385721375 2135 True 3062.000000 3062 92.591000 1701 3835 1 chr7D.!!$R1 2134
13 TraesCS1D01G299800 chr1A 495305544 495307914 2370 False 914.333333 2036 87.200000 1 4517 3 chr1A.!!$F3 4516
14 TraesCS1D01G299800 chr1A 495320188 495320912 724 False 872.000000 872 88.451000 970 1699 1 chr1A.!!$F1 729
15 TraesCS1D01G299800 chr1A 495332430 495333079 649 False 614.000000 614 84.036000 970 1619 1 chr1A.!!$F2 649
16 TraesCS1D01G299800 chr1B 533746677 533748557 1880 False 1009.500000 1605 87.920500 1 1706 2 chr1B.!!$F3 1705
17 TraesCS1D01G299800 chr1B 533759908 533760539 631 False 808.000000 808 89.538000 968 1617 1 chr1B.!!$F1 649
18 TraesCS1D01G299800 chr1B 533815366 533815987 621 False 621.000000 621 85.016000 1000 1619 1 chr1B.!!$F2 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 1007 0.662970 CCACAAAACAATGGCGGACG 60.663 55.0 0.00 0.0 0.00 4.79 F
1656 1888 0.536006 AAGGGAGCACTGTTCTGCAC 60.536 55.0 1.23 0.0 39.86 4.57 F
2438 2694 0.036388 CCAGGCTTTCTTGCGTCCTA 60.036 55.0 0.00 0.0 0.00 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2378 2634 0.321346 TGCAAGAAGGATGTCGAGCA 59.679 50.0 0.00 0.0 32.32 4.26 R
3373 3636 0.039527 GCAAGGTGTTCGGCGATTTT 60.040 50.0 11.76 0.0 0.00 1.82 R
4093 4372 0.039618 GGATGGCCTCAGGTTTTCCA 59.960 55.0 3.32 0.0 43.73 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.216366 TCTTCGAGACTTATCTGATGCG 57.784 45.455 0.00 0.00 34.34 4.73
49 50 6.129457 GCGTCGTCATCCAATTATTTTTATGC 60.129 38.462 0.00 0.00 0.00 3.14
113 115 4.790937 AGGCATTGTTTTTGGGTGAATTT 58.209 34.783 0.00 0.00 0.00 1.82
160 163 7.121382 CCCATTATCTTATACCAGGCAATGAT 58.879 38.462 0.00 0.00 0.00 2.45
175 178 7.204604 CAGGCAATGATTATTCTTGTGCATTA 58.795 34.615 0.00 0.00 0.00 1.90
210 213 2.481276 GGCGTTGCTTTTGAAGAACCTT 60.481 45.455 0.00 0.00 0.00 3.50
312 324 8.669946 TTTTTCTTGTGTCCTTTTTCTTTTGT 57.330 26.923 0.00 0.00 0.00 2.83
315 327 7.227049 TCTTGTGTCCTTTTTCTTTTGTCTT 57.773 32.000 0.00 0.00 0.00 3.01
319 331 7.887381 TGTGTCCTTTTTCTTTTGTCTTTGTA 58.113 30.769 0.00 0.00 0.00 2.41
331 343 8.677300 TCTTTTGTCTTTGTATATCCTTGATGC 58.323 33.333 0.00 0.00 0.00 3.91
336 348 8.704668 TGTCTTTGTATATCCTTGATGCTCTTA 58.295 33.333 0.00 0.00 0.00 2.10
337 349 9.202273 GTCTTTGTATATCCTTGATGCTCTTAG 57.798 37.037 0.00 0.00 0.00 2.18
342 354 8.874156 TGTATATCCTTGATGCTCTTAGACATT 58.126 33.333 0.00 0.00 0.00 2.71
380 392 2.480759 CGGGTGAAATCGGTATCTTCGT 60.481 50.000 0.00 0.00 0.00 3.85
392 404 9.521503 AATCGGTATCTTCGTGATATTCATATG 57.478 33.333 0.00 0.00 39.56 1.78
396 408 9.862371 GGTATCTTCGTGATATTCATATGTTCT 57.138 33.333 1.90 0.00 39.56 3.01
424 436 2.578495 GAAAAGAAGCGATGCAGTGTG 58.422 47.619 0.00 0.00 0.00 3.82
486 614 8.064336 AGAGCTTACGTTTTCCTCTAATCTTA 57.936 34.615 0.00 0.00 31.55 2.10
589 750 1.968540 GCCAAGACGGAAGCTTGCT 60.969 57.895 16.42 3.04 41.02 3.91
671 841 2.434359 CCTCCCGAGCGACCAAAC 60.434 66.667 0.00 0.00 0.00 2.93
801 973 4.260866 GCGCCTTTTTACAAAGTACACTCA 60.261 41.667 0.00 0.00 38.22 3.41
804 976 5.744490 CCTTTTTACAAAGTACACTCACGG 58.256 41.667 0.00 0.00 38.22 4.94
819 993 2.193517 CGGAACACCACCCCACAA 59.806 61.111 0.00 0.00 0.00 3.33
831 1005 1.467678 CCCCACAAAACAATGGCGGA 61.468 55.000 0.00 0.00 34.37 5.54
833 1007 0.662970 CCACAAAACAATGGCGGACG 60.663 55.000 0.00 0.00 0.00 4.79
835 1009 1.007964 CAAAACAATGGCGGACGCA 60.008 52.632 18.95 5.23 44.11 5.24
859 1033 3.065786 CGACCGCGCCCTCTTATATATAA 59.934 47.826 0.00 5.10 0.00 0.98
931 1108 2.093500 AGCACAGGCATCAATCGACTTA 60.093 45.455 0.00 0.00 44.61 2.24
966 1143 4.308458 CAGCGTTGGGTGGACCGA 62.308 66.667 0.00 0.00 44.64 4.69
984 1186 4.200874 ACCGACGTCTCTCTCTGATTAAT 58.799 43.478 14.70 0.00 0.00 1.40
1374 1600 4.624364 TGCGCCATATGCCTCGGG 62.624 66.667 4.18 0.00 36.24 5.14
1499 1725 4.552365 CAGGCGGCCGGTGATCAT 62.552 66.667 29.38 3.70 0.00 2.45
1590 1816 1.269778 ACAGTGGTCATCGTGTGAGTG 60.270 52.381 0.00 0.00 37.56 3.51
1656 1888 0.536006 AAGGGAGCACTGTTCTGCAC 60.536 55.000 1.23 0.00 39.86 4.57
1686 1918 2.429250 TCTTGTAGAATCATCCGGCGAA 59.571 45.455 9.30 0.00 0.00 4.70
1687 1919 3.069586 TCTTGTAGAATCATCCGGCGAAT 59.930 43.478 9.30 0.00 0.00 3.34
1694 1926 1.063006 CATCCGGCGAATGTTGCAG 59.937 57.895 9.30 0.00 0.00 4.41
1725 1957 4.473520 ATCTCCAGCCGTTGCCCG 62.474 66.667 0.00 0.00 38.69 6.13
1755 1994 3.490348 CCCGATGCATAAAATTCTCCCT 58.510 45.455 0.00 0.00 0.00 4.20
1756 1995 3.503748 CCCGATGCATAAAATTCTCCCTC 59.496 47.826 0.00 0.00 0.00 4.30
1757 1996 4.392940 CCGATGCATAAAATTCTCCCTCT 58.607 43.478 0.00 0.00 0.00 3.69
2081 2337 4.680237 CGGCGTCACCCTTGAGCA 62.680 66.667 0.00 0.00 33.26 4.26
2378 2634 0.469705 TTGGAGCACACCAAATGCCT 60.470 50.000 7.41 0.00 45.36 4.75
2393 2649 1.260538 TGCCTGCTCGACATCCTTCT 61.261 55.000 0.00 0.00 0.00 2.85
2433 2689 0.940991 GCAAACCAGGCTTTCTTGCG 60.941 55.000 8.05 0.00 33.74 4.85
2438 2694 0.036388 CCAGGCTTTCTTGCGTCCTA 60.036 55.000 0.00 0.00 0.00 2.94
2539 2801 1.095228 GCCGCCCATTGATCTCGAAA 61.095 55.000 0.00 0.00 0.00 3.46
2641 2903 2.375174 TGGCATACCAAAGAAGGAGTGT 59.625 45.455 0.00 0.00 45.37 3.55
2737 2999 1.536940 GCCAAGCAAATGGGCAATTT 58.463 45.000 0.00 0.00 46.92 1.82
2863 3125 4.566545 CAAGTATTGCAGTCCAAACACA 57.433 40.909 0.00 0.00 40.39 3.72
2953 3215 1.596934 GAGTGAATCACCGGGAGCA 59.403 57.895 10.12 0.42 34.49 4.26
2981 3243 0.538584 AAGCATCCTCATCGCTGTCA 59.461 50.000 0.00 0.00 35.79 3.58
3054 3316 4.270325 GCACTTGAAGTAGTTGTCGAACTT 59.730 41.667 0.00 0.00 39.56 2.66
3304 3567 2.036387 TGTTCTTCTTCCTGGACGTCA 58.964 47.619 18.91 2.63 0.00 4.35
3537 3801 1.040646 CTATCTAGCGGTGAAGGGCA 58.959 55.000 0.00 0.00 0.00 5.36
3567 3831 1.203137 ACCGGGATATAGCTAGTGGCA 60.203 52.381 6.32 0.00 44.79 4.92
3797 4072 3.758172 GCCGAAAAAGTGGCCTGA 58.242 55.556 3.32 0.00 45.73 3.86
3847 4122 1.850377 CTCTAAGATGTCAGGCGCTG 58.150 55.000 7.64 3.67 0.00 5.18
3865 4140 1.218047 GGCATGTAGCTCGTGGTCA 59.782 57.895 0.00 0.00 44.79 4.02
3923 4198 8.243426 TCATTTGCTCACTGTAAATATTTGACC 58.757 33.333 11.05 0.00 38.58 4.02
3926 4201 4.094294 GCTCACTGTAAATATTTGACCGCA 59.906 41.667 11.05 2.03 0.00 5.69
3938 4213 4.386867 TTTGACCGCAAAAACACCATAA 57.613 36.364 0.00 0.00 40.82 1.90
4006 4285 7.439157 TCAAATATGCACACAGCCTTATATC 57.561 36.000 0.00 0.00 44.83 1.63
4056 4335 5.120399 TGGGGTATTTAAGTATGTGAAGCG 58.880 41.667 0.00 0.00 0.00 4.68
4093 4372 5.446340 GGAACGAATCGGCTTACGTAAAAAT 60.446 40.000 9.68 0.00 44.69 1.82
4118 4397 2.629017 ACCTGAGGCCATCCAAAATT 57.371 45.000 5.01 0.00 33.74 1.82
4119 4398 2.460669 ACCTGAGGCCATCCAAAATTC 58.539 47.619 5.01 0.00 33.74 2.17
4129 4408 0.323629 TCCAAAATTCTCGCCCTCGT 59.676 50.000 0.00 0.00 36.96 4.18
4155 4434 3.449918 TGATCTCCACAATCCTACCACA 58.550 45.455 0.00 0.00 0.00 4.17
4219 4697 2.445565 GGCAAAGCCCTCAAGAAAAG 57.554 50.000 0.00 0.00 44.06 2.27
4223 4701 4.220602 GGCAAAGCCCTCAAGAAAAGATTA 59.779 41.667 0.00 0.00 44.06 1.75
4233 4711 7.607991 CCCTCAAGAAAAGATTAGTGTACATGT 59.392 37.037 2.69 2.69 0.00 3.21
4263 5207 2.241176 TGACAGGTTCAACCAAGGTCTT 59.759 45.455 20.33 0.00 41.95 3.01
4323 5272 2.832563 TGAACAAGAACATGTCGCTCA 58.167 42.857 0.00 0.00 31.81 4.26
4334 5283 2.202946 TCGCTCACACGCCAACAA 60.203 55.556 0.00 0.00 0.00 2.83
4346 5295 4.170256 CACGCCAACAATACCCAAAATAC 58.830 43.478 0.00 0.00 0.00 1.89
4347 5296 3.193903 ACGCCAACAATACCCAAAATACC 59.806 43.478 0.00 0.00 0.00 2.73
4350 5299 4.439563 GCCAACAATACCCAAAATACCGAG 60.440 45.833 0.00 0.00 0.00 4.63
4371 5320 1.702491 GGGAAGATCGCGGGTTTTCG 61.702 60.000 6.13 0.00 0.00 3.46
4381 5330 3.754766 GGGTTTTCGCGAGGAGTAT 57.245 52.632 9.59 0.00 0.00 2.12
4414 5363 4.448732 TGTCATCGAATTTGTCACTGACAG 59.551 41.667 11.67 0.00 43.69 3.51
4473 5422 1.063327 CACGCTGAGAGAGCCGTAG 59.937 63.158 0.00 0.00 46.01 3.51
4523 5473 6.926272 CCTTTCCTGCTTACAGTCTATGATAC 59.074 42.308 0.00 0.00 42.81 2.24
4542 5492 1.482593 ACACCTCATTCGATCCTGGTC 59.517 52.381 0.00 0.00 0.00 4.02
4560 5510 2.624364 GGTCGATAGGAAAGAGAGGGAC 59.376 54.545 0.00 0.00 0.00 4.46
4574 5524 1.464997 GAGGGACACTTGAACGCAATC 59.535 52.381 0.00 0.00 32.68 2.67
4587 5537 5.639757 TGAACGCAATCTGGTTTTCATATG 58.360 37.500 0.00 0.00 0.00 1.78
4594 5546 2.746904 TCTGGTTTTCATATGTGCACCG 59.253 45.455 15.69 0.00 0.00 4.94
4610 5562 3.276091 CGTTGCAACCACCTCGCA 61.276 61.111 23.42 0.00 0.00 5.10
4621 5573 0.374758 CACCTCGCAAATCACCATCG 59.625 55.000 0.00 0.00 0.00 3.84
4622 5574 1.353103 CCTCGCAAATCACCATCGC 59.647 57.895 0.00 0.00 0.00 4.58
4623 5575 1.353103 CTCGCAAATCACCATCGCC 59.647 57.895 0.00 0.00 0.00 5.54
4624 5576 2.023181 CGCAAATCACCATCGCCG 59.977 61.111 0.00 0.00 0.00 6.46
4646 5598 4.698575 GAAACTACCTCATGGATCCACTC 58.301 47.826 18.99 0.00 37.04 3.51
4665 5618 0.957395 CAGCGATGCCTTCACCTTGT 60.957 55.000 0.00 0.00 0.00 3.16
4684 5637 0.920763 TTGTCCTCCATCATGGCCCT 60.921 55.000 0.00 0.00 37.47 5.19
4699 5652 2.505982 CCTTGTCGGCGGGATCAT 59.494 61.111 7.21 0.00 0.00 2.45
4731 5684 1.478510 GCTGCACTTCTAGACCTAGCA 59.521 52.381 0.00 0.00 33.32 3.49
4737 5690 3.056536 CACTTCTAGACCTAGCAAGCACA 60.057 47.826 0.00 0.00 33.32 4.57
4774 5727 5.818136 ATCACCATAAGGATTTTCACACG 57.182 39.130 0.00 0.00 38.69 4.49
4775 5728 3.438781 TCACCATAAGGATTTTCACACGC 59.561 43.478 0.00 0.00 38.69 5.34
4776 5729 2.752903 ACCATAAGGATTTTCACACGCC 59.247 45.455 0.00 0.00 38.69 5.68
4777 5730 3.016736 CCATAAGGATTTTCACACGCCT 58.983 45.455 0.00 0.00 36.89 5.52
4778 5731 3.065371 CCATAAGGATTTTCACACGCCTC 59.935 47.826 0.00 0.00 36.89 4.70
4779 5732 2.568623 AAGGATTTTCACACGCCTCT 57.431 45.000 0.00 0.00 0.00 3.69
4780 5733 1.813513 AGGATTTTCACACGCCTCTG 58.186 50.000 0.00 0.00 0.00 3.35
4781 5734 0.169009 GGATTTTCACACGCCTCTGC 59.831 55.000 0.00 0.00 0.00 4.26
4782 5735 0.169009 GATTTTCACACGCCTCTGCC 59.831 55.000 0.00 0.00 0.00 4.85
4783 5736 1.244019 ATTTTCACACGCCTCTGCCC 61.244 55.000 0.00 0.00 0.00 5.36
4784 5737 2.616797 TTTTCACACGCCTCTGCCCA 62.617 55.000 0.00 0.00 0.00 5.36
4785 5738 3.825160 TTCACACGCCTCTGCCCAC 62.825 63.158 0.00 0.00 0.00 4.61
4791 5744 3.791586 GCCTCTGCCCACCCTCTC 61.792 72.222 0.00 0.00 0.00 3.20
4792 5745 3.086600 CCTCTGCCCACCCTCTCC 61.087 72.222 0.00 0.00 0.00 3.71
4793 5746 2.040278 CTCTGCCCACCCTCTCCT 59.960 66.667 0.00 0.00 0.00 3.69
4794 5747 2.039624 TCTGCCCACCCTCTCCTC 59.960 66.667 0.00 0.00 0.00 3.71
4795 5748 2.040278 CTGCCCACCCTCTCCTCT 59.960 66.667 0.00 0.00 0.00 3.69
4796 5749 2.284921 TGCCCACCCTCTCCTCTG 60.285 66.667 0.00 0.00 0.00 3.35
4797 5750 2.284995 GCCCACCCTCTCCTCTGT 60.285 66.667 0.00 0.00 0.00 3.41
4798 5751 1.920835 GCCCACCCTCTCCTCTGTT 60.921 63.158 0.00 0.00 0.00 3.16
4799 5752 1.492993 GCCCACCCTCTCCTCTGTTT 61.493 60.000 0.00 0.00 0.00 2.83
4800 5753 1.068121 CCCACCCTCTCCTCTGTTTT 58.932 55.000 0.00 0.00 0.00 2.43
4801 5754 1.425448 CCCACCCTCTCCTCTGTTTTT 59.575 52.381 0.00 0.00 0.00 1.94
4816 5769 2.757313 TTTTTGGCCATGTGGGAGG 58.243 52.632 6.09 0.00 40.01 4.30
4817 5770 0.105246 TTTTTGGCCATGTGGGAGGT 60.105 50.000 6.09 0.00 40.01 3.85
4818 5771 0.831288 TTTTGGCCATGTGGGAGGTG 60.831 55.000 6.09 0.00 40.01 4.00
4819 5772 2.017668 TTTGGCCATGTGGGAGGTGT 62.018 55.000 6.09 0.00 40.01 4.16
4820 5773 2.361610 GGCCATGTGGGAGGTGTG 60.362 66.667 0.00 0.00 40.01 3.82
4821 5774 3.064324 GCCATGTGGGAGGTGTGC 61.064 66.667 0.54 0.00 40.01 4.57
4822 5775 2.435663 CCATGTGGGAGGTGTGCA 59.564 61.111 0.00 0.00 40.01 4.57
4823 5776 1.000521 CCATGTGGGAGGTGTGCAT 60.001 57.895 0.00 0.00 40.01 3.96
4824 5777 1.317431 CCATGTGGGAGGTGTGCATG 61.317 60.000 0.00 0.00 40.01 4.06
4825 5778 1.679977 ATGTGGGAGGTGTGCATGC 60.680 57.895 11.82 11.82 0.00 4.06
4826 5779 3.434319 GTGGGAGGTGTGCATGCG 61.434 66.667 14.09 0.00 0.00 4.73
4829 5782 3.807538 GGAGGTGTGCATGCGCTG 61.808 66.667 29.79 5.66 39.64 5.18
4838 5791 3.886340 CATGCGCTGCTCTGTTCT 58.114 55.556 9.73 0.00 0.00 3.01
4839 5792 1.714414 CATGCGCTGCTCTGTTCTC 59.286 57.895 9.73 0.00 0.00 2.87
4840 5793 1.449246 ATGCGCTGCTCTGTTCTCC 60.449 57.895 9.73 0.00 0.00 3.71
4841 5794 2.817396 GCGCTGCTCTGTTCTCCC 60.817 66.667 0.00 0.00 0.00 4.30
4842 5795 2.977178 CGCTGCTCTGTTCTCCCT 59.023 61.111 0.00 0.00 0.00 4.20
4843 5796 1.294780 CGCTGCTCTGTTCTCCCTT 59.705 57.895 0.00 0.00 0.00 3.95
4844 5797 0.739112 CGCTGCTCTGTTCTCCCTTC 60.739 60.000 0.00 0.00 0.00 3.46
4845 5798 0.612744 GCTGCTCTGTTCTCCCTTCT 59.387 55.000 0.00 0.00 0.00 2.85
4846 5799 1.827969 GCTGCTCTGTTCTCCCTTCTA 59.172 52.381 0.00 0.00 0.00 2.10
4847 5800 2.433970 GCTGCTCTGTTCTCCCTTCTAT 59.566 50.000 0.00 0.00 0.00 1.98
4848 5801 3.740764 GCTGCTCTGTTCTCCCTTCTATG 60.741 52.174 0.00 0.00 0.00 2.23
4849 5802 2.169352 TGCTCTGTTCTCCCTTCTATGC 59.831 50.000 0.00 0.00 0.00 3.14
4850 5803 2.169352 GCTCTGTTCTCCCTTCTATGCA 59.831 50.000 0.00 0.00 0.00 3.96
4851 5804 3.181456 GCTCTGTTCTCCCTTCTATGCAT 60.181 47.826 3.79 3.79 0.00 3.96
4852 5805 4.378774 CTCTGTTCTCCCTTCTATGCATG 58.621 47.826 10.16 0.00 0.00 4.06
4853 5806 2.877168 CTGTTCTCCCTTCTATGCATGC 59.123 50.000 11.82 11.82 0.00 4.06
4854 5807 2.239402 TGTTCTCCCTTCTATGCATGCA 59.761 45.455 25.04 25.04 0.00 3.96
4855 5808 2.615912 GTTCTCCCTTCTATGCATGCAC 59.384 50.000 25.37 0.84 0.00 4.57
4856 5809 1.839354 TCTCCCTTCTATGCATGCACA 59.161 47.619 25.37 11.52 0.00 4.57
4857 5810 2.440627 TCTCCCTTCTATGCATGCACAT 59.559 45.455 25.37 11.24 0.00 3.21
4858 5811 2.552743 CTCCCTTCTATGCATGCACATG 59.447 50.000 25.37 15.78 41.60 3.21
4859 5812 2.173143 TCCCTTCTATGCATGCACATGA 59.827 45.455 25.37 17.88 41.20 3.07
4860 5813 2.552743 CCCTTCTATGCATGCACATGAG 59.447 50.000 25.37 17.33 41.20 2.90
4861 5814 2.552743 CCTTCTATGCATGCACATGAGG 59.447 50.000 25.37 22.43 41.20 3.86
4862 5815 3.211865 CTTCTATGCATGCACATGAGGT 58.788 45.455 25.37 7.84 41.20 3.85
4874 5827 4.952262 CACATGAGGTGTTCGATGAAAT 57.048 40.909 0.00 0.00 42.75 2.17
4875 5828 4.655027 CACATGAGGTGTTCGATGAAATG 58.345 43.478 0.00 0.00 42.75 2.32
4876 5829 3.127548 ACATGAGGTGTTCGATGAAATGC 59.872 43.478 0.00 0.00 38.01 3.56
4877 5830 2.083774 TGAGGTGTTCGATGAAATGCC 58.916 47.619 0.00 0.00 0.00 4.40
4878 5831 2.290260 TGAGGTGTTCGATGAAATGCCT 60.290 45.455 0.00 0.00 0.00 4.75
4879 5832 2.086869 AGGTGTTCGATGAAATGCCTG 58.913 47.619 0.00 0.00 0.00 4.85
4880 5833 2.083774 GGTGTTCGATGAAATGCCTGA 58.916 47.619 0.00 0.00 0.00 3.86
4881 5834 2.096496 GGTGTTCGATGAAATGCCTGAG 59.904 50.000 0.00 0.00 0.00 3.35
4882 5835 1.739466 TGTTCGATGAAATGCCTGAGC 59.261 47.619 0.00 0.00 40.48 4.26
4883 5836 1.064654 GTTCGATGAAATGCCTGAGCC 59.935 52.381 0.00 0.00 38.69 4.70
4884 5837 0.252761 TCGATGAAATGCCTGAGCCA 59.747 50.000 0.00 0.00 38.69 4.75
4885 5838 0.379669 CGATGAAATGCCTGAGCCAC 59.620 55.000 0.00 0.00 38.69 5.01
4886 5839 1.466856 GATGAAATGCCTGAGCCACA 58.533 50.000 0.00 0.00 38.69 4.17
4887 5840 1.133790 GATGAAATGCCTGAGCCACAC 59.866 52.381 0.00 0.00 38.69 3.82
4888 5841 0.111061 TGAAATGCCTGAGCCACACT 59.889 50.000 0.00 0.00 38.69 3.55
4889 5842 1.251251 GAAATGCCTGAGCCACACTT 58.749 50.000 0.00 0.00 38.69 3.16
4890 5843 2.224744 TGAAATGCCTGAGCCACACTTA 60.225 45.455 0.00 0.00 38.69 2.24
4891 5844 2.584835 AATGCCTGAGCCACACTTAA 57.415 45.000 0.00 0.00 38.69 1.85
4892 5845 2.119801 ATGCCTGAGCCACACTTAAG 57.880 50.000 0.00 0.00 38.69 1.85
4893 5846 0.606401 TGCCTGAGCCACACTTAAGC 60.606 55.000 1.29 0.00 38.69 3.09
4894 5847 0.322008 GCCTGAGCCACACTTAAGCT 60.322 55.000 1.29 0.00 40.24 3.74
4895 5848 1.884067 GCCTGAGCCACACTTAAGCTT 60.884 52.381 3.48 3.48 36.87 3.74
4896 5849 2.508526 CCTGAGCCACACTTAAGCTTT 58.491 47.619 3.20 0.00 36.87 3.51
4897 5850 2.485814 CCTGAGCCACACTTAAGCTTTC 59.514 50.000 3.20 0.00 36.87 2.62
4898 5851 3.406764 CTGAGCCACACTTAAGCTTTCT 58.593 45.455 3.20 0.00 36.87 2.52
4899 5852 3.403038 TGAGCCACACTTAAGCTTTCTC 58.597 45.455 3.20 4.21 36.87 2.87
4900 5853 2.744741 GAGCCACACTTAAGCTTTCTCC 59.255 50.000 3.20 0.00 36.87 3.71
4901 5854 2.373502 AGCCACACTTAAGCTTTCTCCT 59.626 45.455 3.20 0.00 31.27 3.69
4902 5855 2.744741 GCCACACTTAAGCTTTCTCCTC 59.255 50.000 3.20 0.00 0.00 3.71
4903 5856 3.558109 GCCACACTTAAGCTTTCTCCTCT 60.558 47.826 3.20 0.00 0.00 3.69
4904 5857 4.249661 CCACACTTAAGCTTTCTCCTCTC 58.750 47.826 3.20 0.00 0.00 3.20
4905 5858 4.249661 CACACTTAAGCTTTCTCCTCTCC 58.750 47.826 3.20 0.00 0.00 3.71
4906 5859 3.904339 ACACTTAAGCTTTCTCCTCTCCA 59.096 43.478 3.20 0.00 0.00 3.86
4907 5860 4.348168 ACACTTAAGCTTTCTCCTCTCCAA 59.652 41.667 3.20 0.00 0.00 3.53
4908 5861 4.934602 CACTTAAGCTTTCTCCTCTCCAAG 59.065 45.833 3.20 0.09 0.00 3.61
4909 5862 2.488204 AAGCTTTCTCCTCTCCAAGC 57.512 50.000 0.00 0.00 41.72 4.01
4910 5863 1.655372 AGCTTTCTCCTCTCCAAGCT 58.345 50.000 0.00 0.00 45.72 3.74
4911 5864 2.022764 GCTTTCTCCTCTCCAAGCTC 57.977 55.000 0.00 0.00 38.89 4.09
4912 5865 1.738700 GCTTTCTCCTCTCCAAGCTCG 60.739 57.143 0.00 0.00 38.89 5.03
4913 5866 1.821753 CTTTCTCCTCTCCAAGCTCGA 59.178 52.381 0.00 0.00 0.00 4.04
4914 5867 1.178276 TTCTCCTCTCCAAGCTCGAC 58.822 55.000 0.00 0.00 0.00 4.20
4915 5868 0.681564 TCTCCTCTCCAAGCTCGACC 60.682 60.000 0.00 0.00 0.00 4.79
4916 5869 0.682855 CTCCTCTCCAAGCTCGACCT 60.683 60.000 0.00 0.00 0.00 3.85
4917 5870 0.681564 TCCTCTCCAAGCTCGACCTC 60.682 60.000 0.00 0.00 0.00 3.85
4918 5871 1.671901 CCTCTCCAAGCTCGACCTCC 61.672 65.000 0.00 0.00 0.00 4.30
4919 5872 0.967887 CTCTCCAAGCTCGACCTCCA 60.968 60.000 0.00 0.00 0.00 3.86
4920 5873 0.541998 TCTCCAAGCTCGACCTCCAA 60.542 55.000 0.00 0.00 0.00 3.53
4921 5874 0.108424 CTCCAAGCTCGACCTCCAAG 60.108 60.000 0.00 0.00 0.00 3.61
4922 5875 1.743252 CCAAGCTCGACCTCCAAGC 60.743 63.158 0.00 0.00 36.27 4.01
4924 5877 0.739112 CAAGCTCGACCTCCAAGCTC 60.739 60.000 0.00 0.00 45.33 4.09
4925 5878 1.893919 AAGCTCGACCTCCAAGCTCC 61.894 60.000 0.00 0.00 45.33 4.70
4926 5879 2.650116 GCTCGACCTCCAAGCTCCA 61.650 63.158 0.00 0.00 33.23 3.86
4927 5880 1.965754 GCTCGACCTCCAAGCTCCAT 61.966 60.000 0.00 0.00 33.23 3.41
4928 5881 0.539051 CTCGACCTCCAAGCTCCATT 59.461 55.000 0.00 0.00 0.00 3.16
4929 5882 0.984230 TCGACCTCCAAGCTCCATTT 59.016 50.000 0.00 0.00 0.00 2.32
4930 5883 1.351017 TCGACCTCCAAGCTCCATTTT 59.649 47.619 0.00 0.00 0.00 1.82
4931 5884 1.740025 CGACCTCCAAGCTCCATTTTC 59.260 52.381 0.00 0.00 0.00 2.29
4932 5885 2.095461 GACCTCCAAGCTCCATTTTCC 58.905 52.381 0.00 0.00 0.00 3.13
4933 5886 1.713078 ACCTCCAAGCTCCATTTTCCT 59.287 47.619 0.00 0.00 0.00 3.36
4934 5887 2.291217 ACCTCCAAGCTCCATTTTCCTC 60.291 50.000 0.00 0.00 0.00 3.71
4935 5888 2.291153 CCTCCAAGCTCCATTTTCCTCA 60.291 50.000 0.00 0.00 0.00 3.86
4936 5889 3.424703 CTCCAAGCTCCATTTTCCTCAA 58.575 45.455 0.00 0.00 0.00 3.02
4937 5890 3.424703 TCCAAGCTCCATTTTCCTCAAG 58.575 45.455 0.00 0.00 0.00 3.02
4938 5891 3.074390 TCCAAGCTCCATTTTCCTCAAGA 59.926 43.478 0.00 0.00 0.00 3.02
4939 5892 4.021916 CCAAGCTCCATTTTCCTCAAGAT 58.978 43.478 0.00 0.00 0.00 2.40
4940 5893 4.097589 CCAAGCTCCATTTTCCTCAAGATC 59.902 45.833 0.00 0.00 0.00 2.75
4941 5894 4.858965 AGCTCCATTTTCCTCAAGATCT 57.141 40.909 0.00 0.00 0.00 2.75
4942 5895 4.525024 AGCTCCATTTTCCTCAAGATCTG 58.475 43.478 0.00 0.00 0.00 2.90
4943 5896 4.018597 AGCTCCATTTTCCTCAAGATCTGT 60.019 41.667 0.00 0.00 0.00 3.41
4944 5897 4.335037 GCTCCATTTTCCTCAAGATCTGTC 59.665 45.833 0.00 0.00 0.00 3.51
4945 5898 5.743117 CTCCATTTTCCTCAAGATCTGTCT 58.257 41.667 0.00 0.00 35.82 3.41
4946 5899 6.631314 GCTCCATTTTCCTCAAGATCTGTCTA 60.631 42.308 0.00 0.00 33.30 2.59
4947 5900 6.882656 TCCATTTTCCTCAAGATCTGTCTAG 58.117 40.000 0.00 0.00 33.30 2.43
4948 5901 6.054295 CCATTTTCCTCAAGATCTGTCTAGG 58.946 44.000 0.00 1.21 33.28 3.02
4949 5902 6.352565 CCATTTTCCTCAAGATCTGTCTAGGT 60.353 42.308 0.00 0.00 33.60 3.08
4950 5903 6.688073 TTTTCCTCAAGATCTGTCTAGGTT 57.312 37.500 0.00 0.00 33.60 3.50
4951 5904 6.688073 TTTCCTCAAGATCTGTCTAGGTTT 57.312 37.500 0.00 0.00 33.60 3.27
4952 5905 5.667539 TCCTCAAGATCTGTCTAGGTTTG 57.332 43.478 0.00 0.00 33.60 2.93
4953 5906 4.467795 TCCTCAAGATCTGTCTAGGTTTGG 59.532 45.833 0.00 0.00 33.60 3.28
4954 5907 4.187694 CTCAAGATCTGTCTAGGTTTGGC 58.812 47.826 0.00 0.00 33.30 4.52
4955 5908 2.932614 CAAGATCTGTCTAGGTTTGGCG 59.067 50.000 0.00 0.00 33.30 5.69
4956 5909 1.482593 AGATCTGTCTAGGTTTGGCGG 59.517 52.381 0.00 0.00 31.36 6.13
4957 5910 1.207329 GATCTGTCTAGGTTTGGCGGT 59.793 52.381 0.00 0.00 0.00 5.68
4958 5911 0.606604 TCTGTCTAGGTTTGGCGGTC 59.393 55.000 0.00 0.00 0.00 4.79
4959 5912 0.391263 CTGTCTAGGTTTGGCGGTCC 60.391 60.000 0.00 0.00 0.00 4.46
4960 5913 1.447314 GTCTAGGTTTGGCGGTCCG 60.447 63.158 6.99 6.99 34.14 4.79
4961 5914 1.909781 TCTAGGTTTGGCGGTCCGT 60.910 57.895 13.94 0.00 34.14 4.69
4962 5915 1.447314 CTAGGTTTGGCGGTCCGTC 60.447 63.158 9.51 9.51 34.14 4.79
4963 5916 1.885163 CTAGGTTTGGCGGTCCGTCT 61.885 60.000 18.28 0.00 34.14 4.18
4964 5917 1.880819 TAGGTTTGGCGGTCCGTCTC 61.881 60.000 18.28 7.52 34.14 3.36
4965 5918 3.110178 GTTTGGCGGTCCGTCTCG 61.110 66.667 18.28 0.00 34.14 4.04
4966 5919 3.608662 TTTGGCGGTCCGTCTCGT 61.609 61.111 18.28 0.00 34.14 4.18
4967 5920 3.562779 TTTGGCGGTCCGTCTCGTC 62.563 63.158 18.28 0.00 34.14 4.20
4972 5925 3.808656 GGTCCGTCTCGTCCCGTC 61.809 72.222 0.00 0.00 0.00 4.79
4973 5926 3.808656 GTCCGTCTCGTCCCGTCC 61.809 72.222 0.00 0.00 0.00 4.79
4977 5930 2.758737 GTCTCGTCCCGTCCCCAT 60.759 66.667 0.00 0.00 0.00 4.00
4978 5931 2.441532 TCTCGTCCCGTCCCCATC 60.442 66.667 0.00 0.00 0.00 3.51
4979 5932 3.537874 CTCGTCCCGTCCCCATCC 61.538 72.222 0.00 0.00 0.00 3.51
4980 5933 4.070265 TCGTCCCGTCCCCATCCT 62.070 66.667 0.00 0.00 0.00 3.24
4981 5934 3.537874 CGTCCCGTCCCCATCCTC 61.538 72.222 0.00 0.00 0.00 3.71
4982 5935 2.365105 GTCCCGTCCCCATCCTCA 60.365 66.667 0.00 0.00 0.00 3.86
4983 5936 2.365105 TCCCGTCCCCATCCTCAC 60.365 66.667 0.00 0.00 0.00 3.51
4984 5937 3.480133 CCCGTCCCCATCCTCACC 61.480 72.222 0.00 0.00 0.00 4.02
4985 5938 3.849951 CCGTCCCCATCCTCACCG 61.850 72.222 0.00 0.00 0.00 4.94
4986 5939 4.530857 CGTCCCCATCCTCACCGC 62.531 72.222 0.00 0.00 0.00 5.68
4987 5940 4.176752 GTCCCCATCCTCACCGCC 62.177 72.222 0.00 0.00 0.00 6.13
4990 5943 4.530857 CCCATCCTCACCGCCGTC 62.531 72.222 0.00 0.00 0.00 4.79
4991 5944 4.873129 CCATCCTCACCGCCGTCG 62.873 72.222 0.00 0.00 0.00 5.12
4992 5945 3.822192 CATCCTCACCGCCGTCGA 61.822 66.667 0.00 0.00 38.10 4.20
4993 5946 2.833582 ATCCTCACCGCCGTCGAT 60.834 61.111 0.00 0.00 38.10 3.59
4994 5947 2.846652 ATCCTCACCGCCGTCGATC 61.847 63.158 0.00 0.00 38.10 3.69
4995 5948 4.907034 CCTCACCGCCGTCGATCG 62.907 72.222 9.36 9.36 38.10 3.69
5009 5962 4.654412 ATCGCCTGCGCCGATCTC 62.654 66.667 13.23 0.00 41.13 2.75
5013 5966 4.193334 CCTGCGCCGATCTCGTCA 62.193 66.667 4.18 4.50 37.74 4.35
5014 5967 2.951745 CTGCGCCGATCTCGTCAC 60.952 66.667 4.18 0.00 37.74 3.67
5015 5968 4.492160 TGCGCCGATCTCGTCACC 62.492 66.667 4.18 0.00 37.74 4.02
5017 5970 4.907034 CGCCGATCTCGTCACCGG 62.907 72.222 0.00 0.00 44.34 5.28
5019 5972 3.822192 CCGATCTCGTCACCGGCA 61.822 66.667 0.00 0.00 37.74 5.69
5020 5973 2.579787 CGATCTCGTCACCGGCAC 60.580 66.667 0.00 0.00 33.95 5.01
5021 5974 2.202756 GATCTCGTCACCGGCACC 60.203 66.667 0.00 0.00 33.95 5.01
5022 5975 2.994995 ATCTCGTCACCGGCACCA 60.995 61.111 0.00 0.00 33.95 4.17
5023 5976 3.296709 ATCTCGTCACCGGCACCAC 62.297 63.158 0.00 0.00 33.95 4.16
5039 5992 4.379243 ACCGCGGTGAGCCTCTTG 62.379 66.667 33.75 0.00 44.76 3.02
5040 5993 4.379243 CCGCGGTGAGCCTCTTGT 62.379 66.667 19.50 0.00 44.76 3.16
5041 5994 2.357517 CGCGGTGAGCCTCTTGTT 60.358 61.111 0.00 0.00 44.76 2.83
5042 5995 2.383527 CGCGGTGAGCCTCTTGTTC 61.384 63.158 0.00 0.00 44.76 3.18
5043 5996 1.004440 GCGGTGAGCCTCTTGTTCT 60.004 57.895 0.00 0.00 40.81 3.01
5044 5997 0.603975 GCGGTGAGCCTCTTGTTCTT 60.604 55.000 0.00 0.00 40.81 2.52
5045 5998 1.337823 GCGGTGAGCCTCTTGTTCTTA 60.338 52.381 0.00 0.00 40.81 2.10
5046 5999 2.678190 GCGGTGAGCCTCTTGTTCTTAT 60.678 50.000 0.00 0.00 40.81 1.73
5047 6000 3.190874 CGGTGAGCCTCTTGTTCTTATC 58.809 50.000 0.00 0.00 0.00 1.75
5048 6001 3.118956 CGGTGAGCCTCTTGTTCTTATCT 60.119 47.826 0.00 0.00 0.00 1.98
5049 6002 4.621747 CGGTGAGCCTCTTGTTCTTATCTT 60.622 45.833 0.00 0.00 0.00 2.40
5050 6003 4.873259 GGTGAGCCTCTTGTTCTTATCTTC 59.127 45.833 0.00 0.00 0.00 2.87
5051 6004 5.337975 GGTGAGCCTCTTGTTCTTATCTTCT 60.338 44.000 0.00 0.00 0.00 2.85
5052 6005 6.169800 GTGAGCCTCTTGTTCTTATCTTCTT 58.830 40.000 0.00 0.00 0.00 2.52
5053 6006 6.652900 GTGAGCCTCTTGTTCTTATCTTCTTT 59.347 38.462 0.00 0.00 0.00 2.52
5054 6007 6.876257 TGAGCCTCTTGTTCTTATCTTCTTTC 59.124 38.462 0.00 0.00 0.00 2.62
5055 6008 6.773638 AGCCTCTTGTTCTTATCTTCTTTCA 58.226 36.000 0.00 0.00 0.00 2.69
5056 6009 7.227156 AGCCTCTTGTTCTTATCTTCTTTCAA 58.773 34.615 0.00 0.00 0.00 2.69
5057 6010 7.721399 AGCCTCTTGTTCTTATCTTCTTTCAAA 59.279 33.333 0.00 0.00 0.00 2.69
5058 6011 8.352942 GCCTCTTGTTCTTATCTTCTTTCAAAA 58.647 33.333 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.915397 ACAGCATAAAAATAATTGGATGACGAC 59.085 33.333 0.00 0.00 0.00 4.34
113 115 6.758243 GGTTTTCACCCTGGAGAAAGTCCA 62.758 50.000 17.94 0.00 44.89 4.02
147 150 5.067674 GCACAAGAATAATCATTGCCTGGTA 59.932 40.000 0.00 0.00 0.00 3.25
151 154 5.864418 ATGCACAAGAATAATCATTGCCT 57.136 34.783 0.00 0.00 0.00 4.75
179 182 1.398692 AAGCAACGCCTCCAAGAAAA 58.601 45.000 0.00 0.00 0.00 2.29
180 183 1.398692 AAAGCAACGCCTCCAAGAAA 58.601 45.000 0.00 0.00 0.00 2.52
186 189 0.951558 TCTTCAAAAGCAACGCCTCC 59.048 50.000 0.00 0.00 0.00 4.30
210 213 7.547370 CCAAAGACAACACCTGAAATACAAAAA 59.453 33.333 0.00 0.00 0.00 1.94
220 223 1.283613 ACCACCAAAGACAACACCTGA 59.716 47.619 0.00 0.00 0.00 3.86
222 225 1.684869 CCACCACCAAAGACAACACCT 60.685 52.381 0.00 0.00 0.00 4.00
234 237 0.396435 CAGCACTCTAACCACCACCA 59.604 55.000 0.00 0.00 0.00 4.17
292 295 7.384932 ACAAAGACAAAAGAAAAAGGACACAAG 59.615 33.333 0.00 0.00 0.00 3.16
295 298 8.926715 ATACAAAGACAAAAGAAAAAGGACAC 57.073 30.769 0.00 0.00 0.00 3.67
306 309 8.680903 AGCATCAAGGATATACAAAGACAAAAG 58.319 33.333 0.00 0.00 0.00 2.27
312 324 9.147732 TCTAAGAGCATCAAGGATATACAAAGA 57.852 33.333 0.00 0.00 37.82 2.52
315 327 8.250143 TGTCTAAGAGCATCAAGGATATACAA 57.750 34.615 0.00 0.00 37.82 2.41
319 331 9.064706 CAAAATGTCTAAGAGCATCAAGGATAT 57.935 33.333 0.00 0.00 37.82 1.63
336 348 6.150474 CCGGTCTTTATACCAACAAAATGTCT 59.850 38.462 0.00 0.00 39.71 3.41
337 349 6.319399 CCGGTCTTTATACCAACAAAATGTC 58.681 40.000 0.00 0.00 39.71 3.06
342 354 4.073549 CACCCGGTCTTTATACCAACAAA 58.926 43.478 0.00 0.00 39.71 2.83
380 392 9.816354 TTCGACAAAGAGAACATATGAATATCA 57.184 29.630 10.38 0.00 0.00 2.15
392 404 4.025979 TCGCTTCTTTTCGACAAAGAGAAC 60.026 41.667 16.69 11.90 37.54 3.01
396 408 3.363970 GCATCGCTTCTTTTCGACAAAGA 60.364 43.478 14.67 14.67 37.55 2.52
424 436 2.605818 TGTTCACGCGATGGTAATTAGC 59.394 45.455 15.93 7.74 0.00 3.09
462 590 8.874744 ATAAGATTAGAGGAAAACGTAAGCTC 57.125 34.615 0.00 0.00 45.62 4.09
496 624 6.037500 GTGTGGAACTAGGAAAACGTAACTTT 59.962 38.462 0.00 0.00 38.04 2.66
502 630 3.463944 CAGTGTGGAACTAGGAAAACGT 58.536 45.455 0.00 0.00 36.83 3.99
506 634 1.771854 TGGCAGTGTGGAACTAGGAAA 59.228 47.619 0.00 0.00 36.83 3.13
541 699 1.062587 CGCCGTCCTTCTTGCAATAAG 59.937 52.381 15.68 15.68 0.00 1.73
542 700 1.083489 CGCCGTCCTTCTTGCAATAA 58.917 50.000 0.00 0.00 0.00 1.40
544 702 2.690778 GCGCCGTCCTTCTTGCAAT 61.691 57.895 0.00 0.00 0.00 3.56
619 780 3.261981 AGATATTTGGACGGCGAACTT 57.738 42.857 16.62 0.00 0.00 2.66
628 789 1.334869 CGGGCAGCAAGATATTTGGAC 59.665 52.381 0.00 0.00 0.00 4.02
801 973 2.212794 TTTGTGGGGTGGTGTTCCGT 62.213 55.000 0.00 0.00 36.30 4.69
804 976 1.187087 TGTTTTGTGGGGTGGTGTTC 58.813 50.000 0.00 0.00 0.00 3.18
819 993 2.953821 CTGCGTCCGCCATTGTTT 59.046 55.556 9.43 0.00 41.09 2.83
859 1033 0.324738 TCTCTGCTCTGTTCGGGGAT 60.325 55.000 0.00 0.00 0.00 3.85
931 1108 5.003804 ACGCTGGATGTTTCAAACTATTCT 58.996 37.500 1.10 0.00 0.00 2.40
960 1137 0.391395 TCAGAGAGAGACGTCGGTCC 60.391 60.000 10.46 5.45 44.54 4.46
961 1138 1.658994 ATCAGAGAGAGACGTCGGTC 58.341 55.000 10.46 10.85 43.76 4.79
962 1139 2.116827 AATCAGAGAGAGACGTCGGT 57.883 50.000 10.46 0.38 0.00 4.69
963 1140 4.822036 ATTAATCAGAGAGAGACGTCGG 57.178 45.455 10.46 0.00 0.00 4.79
966 1143 7.776107 TGATGAAATTAATCAGAGAGAGACGT 58.224 34.615 0.00 0.00 31.76 4.34
984 1186 4.009675 GACCCATGCTACTGTTGATGAAA 58.990 43.478 0.00 0.00 0.00 2.69
998 1200 1.154205 CGAATCAGGACGACCCATGC 61.154 60.000 0.00 0.00 37.41 4.06
1374 1600 3.996744 CTCGCCGTCGACGAACTCC 62.997 68.421 37.65 18.36 43.02 3.85
1590 1816 2.179589 CAATGCTTAGTTGCACGATGC 58.820 47.619 0.00 0.00 46.33 3.91
1602 1833 0.969917 ACCGGCAATGGCAATGCTTA 60.970 50.000 25.27 0.00 43.34 3.09
1656 1888 1.855360 GATTCTACAAGAGCTTCCGCG 59.145 52.381 0.00 0.00 42.32 6.46
1686 1918 2.746362 GCTCTTAGAAGCACTGCAACAT 59.254 45.455 3.30 0.00 42.05 2.71
1687 1919 2.146342 GCTCTTAGAAGCACTGCAACA 58.854 47.619 3.30 0.00 42.05 3.33
1732 1969 2.558359 GGAGAATTTTATGCATCGGGGG 59.442 50.000 0.19 0.00 0.00 5.40
1733 1970 2.558359 GGGAGAATTTTATGCATCGGGG 59.442 50.000 0.19 0.00 0.00 5.73
1735 1972 4.214971 CAGAGGGAGAATTTTATGCATCGG 59.785 45.833 0.19 0.00 0.00 4.18
2038 2294 3.000078 GCGACGTGTGATGAAATACGAAT 60.000 43.478 0.00 0.00 39.61 3.34
2042 2298 1.589022 GCGCGACGTGTGATGAAATAC 60.589 52.381 12.10 0.00 0.00 1.89
2071 2327 1.492176 CACCTATGGATGCTCAAGGGT 59.508 52.381 5.39 0.00 0.00 4.34
2211 2467 4.673968 TGACACTGAACCATACTAGAGGT 58.326 43.478 0.00 0.00 40.61 3.85
2215 2471 5.118664 CGTGTTTGACACTGAACCATACTAG 59.881 44.000 9.27 0.00 46.46 2.57
2378 2634 0.321346 TGCAAGAAGGATGTCGAGCA 59.679 50.000 0.00 0.00 32.32 4.26
2393 2649 2.440409 GAAGATTCAGGAGGCTTGCAA 58.560 47.619 0.00 0.00 0.00 4.08
2539 2801 1.486726 GGTCATTCTCCTCCGGTGAAT 59.513 52.381 4.76 6.96 43.78 2.57
2737 2999 5.392919 CGACTGTATGCATTGGAAATGGAAA 60.393 40.000 3.54 0.00 0.00 3.13
2808 3070 1.202582 CGGAAGACACTGTTCGGATCT 59.797 52.381 0.00 0.00 0.00 2.75
2816 3078 0.606401 CCCAATGCGGAAGACACTGT 60.606 55.000 0.00 0.00 36.56 3.55
2852 3114 0.751643 GTGGTGGCTGTGTTTGGACT 60.752 55.000 0.00 0.00 0.00 3.85
2953 3215 0.541392 TGAGGATGCTTGCATACGGT 59.459 50.000 11.63 0.00 0.00 4.83
2981 3243 1.134580 CACCTCGATCCAGAAGTGCAT 60.135 52.381 0.00 0.00 0.00 3.96
3054 3316 4.165180 TCAGGATTGTTAATTCCATCCGGA 59.835 41.667 6.61 6.61 40.60 5.14
3067 3329 4.331108 GAAAGCTCTTCCTCAGGATTGTT 58.669 43.478 0.00 0.00 0.00 2.83
3373 3636 0.039527 GCAAGGTGTTCGGCGATTTT 60.040 50.000 11.76 0.00 0.00 1.82
3547 3811 1.203137 TGCCACTAGCTATATCCCGGT 60.203 52.381 0.00 0.00 44.23 5.28
3847 4122 1.084370 GTGACCACGAGCTACATGCC 61.084 60.000 0.00 0.00 44.23 4.40
3865 4140 4.352039 GTGTTCGATCATACACTCGATGT 58.648 43.478 16.19 5.92 42.84 3.06
3887 4162 1.005340 GAGCAAATGAGCAGTCCGAG 58.995 55.000 0.00 0.00 36.85 4.63
3891 4166 2.149578 ACAGTGAGCAAATGAGCAGTC 58.850 47.619 0.00 0.00 36.85 3.51
3923 4198 7.907563 AGAAAAATGTTTTATGGTGTTTTTGCG 59.092 29.630 0.00 0.00 31.28 4.85
4034 4313 5.121105 ACGCTTCACATACTTAAATACCCC 58.879 41.667 0.00 0.00 0.00 4.95
4056 4335 2.218953 TCGTTCCGCATCAATCCTAC 57.781 50.000 0.00 0.00 0.00 3.18
4086 4365 4.039852 TGGCCTCAGGTTTTCCATTTTTAC 59.960 41.667 3.32 0.00 43.73 2.01
4093 4372 0.039618 GGATGGCCTCAGGTTTTCCA 59.960 55.000 3.32 0.00 43.73 3.53
4118 4397 1.813178 GATCATATCACGAGGGCGAGA 59.187 52.381 0.00 0.00 41.16 4.04
4119 4398 1.815613 AGATCATATCACGAGGGCGAG 59.184 52.381 0.00 0.00 41.64 5.03
4129 4408 6.014242 GTGGTAGGATTGTGGAGATCATATCA 60.014 42.308 0.00 0.00 30.89 2.15
4209 4687 8.993121 ACACATGTACACTAATCTTTTCTTGAG 58.007 33.333 0.00 0.00 0.00 3.02
4219 4697 6.530181 TCAACATCGACACATGTACACTAATC 59.470 38.462 0.00 0.00 35.87 1.75
4223 4701 3.987868 GTCAACATCGACACATGTACACT 59.012 43.478 0.00 0.00 35.87 3.55
4233 4711 2.900716 TGAACCTGTCAACATCGACA 57.099 45.000 0.00 0.00 43.54 4.35
4263 5207 5.047306 ACTTCGGTGATGAAAGTCTCATGTA 60.047 40.000 0.00 0.00 45.23 2.29
4304 5253 2.543848 TGTGAGCGACATGTTCTTGTTC 59.456 45.455 0.00 0.00 0.00 3.18
4323 5272 1.693627 TTTGGGTATTGTTGGCGTGT 58.306 45.000 0.00 0.00 0.00 4.49
4334 5283 3.660959 TCCCTCTCGGTATTTTGGGTAT 58.339 45.455 0.00 0.00 36.23 2.73
4346 5295 2.333225 CGCGATCTTCCCTCTCGG 59.667 66.667 0.00 0.00 33.17 4.63
4347 5296 2.333225 CCGCGATCTTCCCTCTCG 59.667 66.667 8.23 0.00 35.57 4.04
4350 5299 0.392595 AAAACCCGCGATCTTCCCTC 60.393 55.000 8.23 0.00 0.00 4.30
4371 5320 5.184340 ACAAGTATGTGTATACTCCTCGC 57.816 43.478 4.17 0.00 46.75 5.03
4381 5330 7.600752 TGACAAATTCGATGACAAGTATGTGTA 59.399 33.333 0.00 0.00 40.74 2.90
4414 5363 8.813643 AAACATCGCTAGACAATATAGGTTAC 57.186 34.615 0.00 0.00 0.00 2.50
4506 5456 6.392625 TGAGGTGTATCATAGACTGTAAGC 57.607 41.667 0.00 0.00 37.60 3.09
4523 5473 1.536922 CGACCAGGATCGAATGAGGTG 60.537 57.143 7.57 0.00 45.13 4.00
4542 5492 3.292460 AGTGTCCCTCTCTTTCCTATCG 58.708 50.000 0.00 0.00 0.00 2.92
4560 5510 3.354089 AAACCAGATTGCGTTCAAGTG 57.646 42.857 0.00 0.00 35.37 3.16
4574 5524 2.487762 ACGGTGCACATATGAAAACCAG 59.512 45.455 20.43 11.15 0.00 4.00
4594 5546 3.115556 TTGCGAGGTGGTTGCAAC 58.884 55.556 21.59 21.59 46.94 4.17
4600 5552 0.038166 ATGGTGATTTGCGAGGTGGT 59.962 50.000 0.00 0.00 0.00 4.16
4610 5562 1.821216 AGTTTCGGCGATGGTGATTT 58.179 45.000 11.76 0.00 0.00 2.17
4621 5573 2.484889 GATCCATGAGGTAGTTTCGGC 58.515 52.381 0.00 0.00 35.89 5.54
4622 5574 2.434336 TGGATCCATGAGGTAGTTTCGG 59.566 50.000 11.44 0.00 35.89 4.30
4623 5575 3.133003 AGTGGATCCATGAGGTAGTTTCG 59.867 47.826 19.62 0.00 35.89 3.46
4624 5576 4.162320 TGAGTGGATCCATGAGGTAGTTTC 59.838 45.833 19.62 0.00 35.89 2.78
4646 5598 0.957395 ACAAGGTGAAGGCATCGCTG 60.957 55.000 3.11 0.00 38.64 5.18
4665 5618 0.920763 AGGGCCATGATGGAGGACAA 60.921 55.000 17.22 0.00 40.96 3.18
4684 5637 2.513666 GCATGATCCCGCCGACAA 60.514 61.111 0.00 0.00 0.00 3.18
4713 5666 2.093973 GCTTGCTAGGTCTAGAAGTGCA 60.094 50.000 9.03 0.27 35.21 4.57
4714 5667 2.093973 TGCTTGCTAGGTCTAGAAGTGC 60.094 50.000 9.03 7.42 35.21 4.40
4725 5678 2.044946 GGGGGTGTGCTTGCTAGG 60.045 66.667 0.00 0.00 0.00 3.02
4743 5696 2.434336 TCCTTATGGTGATTCCCGAGTG 59.566 50.000 0.00 0.00 34.77 3.51
4746 5699 4.788925 AAATCCTTATGGTGATTCCCGA 57.211 40.909 0.00 0.00 34.77 5.14
4774 5727 3.791586 GAGAGGGTGGGCAGAGGC 61.792 72.222 0.00 0.00 40.13 4.70
4775 5728 3.086600 GGAGAGGGTGGGCAGAGG 61.087 72.222 0.00 0.00 0.00 3.69
4776 5729 2.040278 AGGAGAGGGTGGGCAGAG 59.960 66.667 0.00 0.00 0.00 3.35
4777 5730 2.039624 GAGGAGAGGGTGGGCAGA 59.960 66.667 0.00 0.00 0.00 4.26
4778 5731 2.040278 AGAGGAGAGGGTGGGCAG 59.960 66.667 0.00 0.00 0.00 4.85
4779 5732 2.284921 CAGAGGAGAGGGTGGGCA 60.285 66.667 0.00 0.00 0.00 5.36
4780 5733 1.492993 AAACAGAGGAGAGGGTGGGC 61.493 60.000 0.00 0.00 0.00 5.36
4781 5734 1.068121 AAAACAGAGGAGAGGGTGGG 58.932 55.000 0.00 0.00 0.00 4.61
4782 5735 2.959465 AAAAACAGAGGAGAGGGTGG 57.041 50.000 0.00 0.00 0.00 4.61
4798 5751 0.105246 ACCTCCCACATGGCCAAAAA 60.105 50.000 10.96 0.00 0.00 1.94
4799 5752 0.831288 CACCTCCCACATGGCCAAAA 60.831 55.000 10.96 0.00 0.00 2.44
4800 5753 1.228831 CACCTCCCACATGGCCAAA 60.229 57.895 10.96 0.00 0.00 3.28
4801 5754 2.440147 CACCTCCCACATGGCCAA 59.560 61.111 10.96 0.00 0.00 4.52
4802 5755 2.858476 ACACCTCCCACATGGCCA 60.858 61.111 8.56 8.56 0.00 5.36
4803 5756 2.361610 CACACCTCCCACATGGCC 60.362 66.667 0.00 0.00 0.00 5.36
4804 5757 3.064324 GCACACCTCCCACATGGC 61.064 66.667 0.00 0.00 0.00 4.40
4805 5758 1.000521 ATGCACACCTCCCACATGG 60.001 57.895 0.00 0.00 0.00 3.66
4806 5759 1.940883 GCATGCACACCTCCCACATG 61.941 60.000 14.21 0.00 40.80 3.21
4807 5760 1.679977 GCATGCACACCTCCCACAT 60.680 57.895 14.21 0.00 0.00 3.21
4808 5761 2.282391 GCATGCACACCTCCCACA 60.282 61.111 14.21 0.00 0.00 4.17
4809 5762 3.434319 CGCATGCACACCTCCCAC 61.434 66.667 19.57 0.00 0.00 4.61
4812 5765 3.807538 CAGCGCATGCACACCTCC 61.808 66.667 19.57 0.00 46.23 4.30
4821 5774 1.703438 GGAGAACAGAGCAGCGCATG 61.703 60.000 11.47 6.31 0.00 4.06
4822 5775 1.449246 GGAGAACAGAGCAGCGCAT 60.449 57.895 11.47 0.00 0.00 4.73
4823 5776 2.047844 GGAGAACAGAGCAGCGCA 60.048 61.111 11.47 0.00 0.00 6.09
4824 5777 2.794820 AAGGGAGAACAGAGCAGCGC 62.795 60.000 0.00 0.00 0.00 5.92
4825 5778 0.739112 GAAGGGAGAACAGAGCAGCG 60.739 60.000 0.00 0.00 0.00 5.18
4826 5779 0.612744 AGAAGGGAGAACAGAGCAGC 59.387 55.000 0.00 0.00 0.00 5.25
4827 5780 3.740764 GCATAGAAGGGAGAACAGAGCAG 60.741 52.174 0.00 0.00 0.00 4.24
4828 5781 2.169352 GCATAGAAGGGAGAACAGAGCA 59.831 50.000 0.00 0.00 0.00 4.26
4829 5782 2.169352 TGCATAGAAGGGAGAACAGAGC 59.831 50.000 0.00 0.00 0.00 4.09
4830 5783 4.378774 CATGCATAGAAGGGAGAACAGAG 58.621 47.826 0.00 0.00 0.00 3.35
4831 5784 3.432749 GCATGCATAGAAGGGAGAACAGA 60.433 47.826 14.21 0.00 0.00 3.41
4832 5785 2.877168 GCATGCATAGAAGGGAGAACAG 59.123 50.000 14.21 0.00 0.00 3.16
4833 5786 2.239402 TGCATGCATAGAAGGGAGAACA 59.761 45.455 18.46 0.00 0.00 3.18
4834 5787 2.615912 GTGCATGCATAGAAGGGAGAAC 59.384 50.000 25.64 1.60 0.00 3.01
4835 5788 2.239402 TGTGCATGCATAGAAGGGAGAA 59.761 45.455 25.64 0.00 0.00 2.87
4836 5789 1.839354 TGTGCATGCATAGAAGGGAGA 59.161 47.619 25.64 0.00 0.00 3.71
4837 5790 2.336945 TGTGCATGCATAGAAGGGAG 57.663 50.000 25.64 0.00 0.00 4.30
4838 5791 2.173143 TCATGTGCATGCATAGAAGGGA 59.827 45.455 25.64 11.80 38.65 4.20
4839 5792 2.552743 CTCATGTGCATGCATAGAAGGG 59.447 50.000 25.64 11.47 38.65 3.95
4840 5793 2.552743 CCTCATGTGCATGCATAGAAGG 59.447 50.000 25.64 24.67 38.65 3.46
4841 5794 3.003378 CACCTCATGTGCATGCATAGAAG 59.997 47.826 25.64 20.27 38.34 2.85
4842 5795 2.946990 CACCTCATGTGCATGCATAGAA 59.053 45.455 25.64 12.16 38.34 2.10
4843 5796 2.567985 CACCTCATGTGCATGCATAGA 58.432 47.619 25.64 19.58 38.34 1.98
4854 5807 3.127548 GCATTTCATCGAACACCTCATGT 59.872 43.478 0.00 0.00 46.42 3.21
4855 5808 3.488047 GGCATTTCATCGAACACCTCATG 60.488 47.826 0.00 0.00 0.00 3.07
4856 5809 2.684881 GGCATTTCATCGAACACCTCAT 59.315 45.455 0.00 0.00 0.00 2.90
4857 5810 2.083774 GGCATTTCATCGAACACCTCA 58.916 47.619 0.00 0.00 0.00 3.86
4858 5811 2.096496 CAGGCATTTCATCGAACACCTC 59.904 50.000 0.00 0.00 0.00 3.85
4859 5812 2.086869 CAGGCATTTCATCGAACACCT 58.913 47.619 0.00 0.00 0.00 4.00
4860 5813 2.083774 TCAGGCATTTCATCGAACACC 58.916 47.619 0.00 0.00 0.00 4.16
4861 5814 2.476854 GCTCAGGCATTTCATCGAACAC 60.477 50.000 0.00 0.00 38.54 3.32
4862 5815 1.739466 GCTCAGGCATTTCATCGAACA 59.261 47.619 0.00 0.00 38.54 3.18
4863 5816 1.064654 GGCTCAGGCATTTCATCGAAC 59.935 52.381 0.00 0.00 40.87 3.95
4864 5817 1.339920 TGGCTCAGGCATTTCATCGAA 60.340 47.619 0.00 0.00 40.87 3.71
4865 5818 0.252761 TGGCTCAGGCATTTCATCGA 59.747 50.000 0.00 0.00 40.87 3.59
4866 5819 0.379669 GTGGCTCAGGCATTTCATCG 59.620 55.000 3.25 0.00 40.92 3.84
4867 5820 1.133790 GTGTGGCTCAGGCATTTCATC 59.866 52.381 3.25 0.00 40.92 2.92
4868 5821 1.180029 GTGTGGCTCAGGCATTTCAT 58.820 50.000 3.25 0.00 40.92 2.57
4869 5822 0.111061 AGTGTGGCTCAGGCATTTCA 59.889 50.000 3.25 0.00 40.92 2.69
4870 5823 1.251251 AAGTGTGGCTCAGGCATTTC 58.749 50.000 3.25 0.00 40.92 2.17
4871 5824 2.584835 TAAGTGTGGCTCAGGCATTT 57.415 45.000 3.25 2.49 40.92 2.32
4872 5825 2.440409 CTTAAGTGTGGCTCAGGCATT 58.560 47.619 3.25 0.00 40.92 3.56
4873 5826 1.952367 GCTTAAGTGTGGCTCAGGCAT 60.952 52.381 3.25 0.00 40.92 4.40
4874 5827 0.606401 GCTTAAGTGTGGCTCAGGCA 60.606 55.000 0.00 0.00 40.87 4.75
4875 5828 0.322008 AGCTTAAGTGTGGCTCAGGC 60.322 55.000 4.02 0.00 37.82 4.85
4876 5829 2.191128 AAGCTTAAGTGTGGCTCAGG 57.809 50.000 0.00 0.00 35.06 3.86
4877 5830 3.406764 AGAAAGCTTAAGTGTGGCTCAG 58.593 45.455 0.00 0.00 35.06 3.35
4878 5831 3.403038 GAGAAAGCTTAAGTGTGGCTCA 58.597 45.455 0.00 0.00 35.06 4.26
4879 5832 2.744741 GGAGAAAGCTTAAGTGTGGCTC 59.255 50.000 0.00 5.38 35.06 4.70
4880 5833 2.373502 AGGAGAAAGCTTAAGTGTGGCT 59.626 45.455 0.00 0.00 37.99 4.75
4881 5834 2.744741 GAGGAGAAAGCTTAAGTGTGGC 59.255 50.000 0.00 0.00 0.00 5.01
4882 5835 4.249661 GAGAGGAGAAAGCTTAAGTGTGG 58.750 47.826 0.00 0.00 0.00 4.17
4883 5836 4.249661 GGAGAGGAGAAAGCTTAAGTGTG 58.750 47.826 0.00 0.00 0.00 3.82
4884 5837 3.904339 TGGAGAGGAGAAAGCTTAAGTGT 59.096 43.478 0.00 0.00 0.00 3.55
4885 5838 4.543590 TGGAGAGGAGAAAGCTTAAGTG 57.456 45.455 0.00 0.00 0.00 3.16
4886 5839 4.564613 GCTTGGAGAGGAGAAAGCTTAAGT 60.565 45.833 0.00 0.00 41.41 2.24
4887 5840 3.938334 GCTTGGAGAGGAGAAAGCTTAAG 59.062 47.826 0.00 0.00 41.41 1.85
4888 5841 3.944087 GCTTGGAGAGGAGAAAGCTTAA 58.056 45.455 0.00 0.00 41.41 1.85
4889 5842 3.618690 GCTTGGAGAGGAGAAAGCTTA 57.381 47.619 0.00 0.00 41.41 3.09
4890 5843 2.488204 GCTTGGAGAGGAGAAAGCTT 57.512 50.000 0.00 0.00 41.41 3.74
4892 5845 1.738700 CGAGCTTGGAGAGGAGAAAGC 60.739 57.143 0.00 0.00 44.24 3.51
4893 5846 1.821753 TCGAGCTTGGAGAGGAGAAAG 59.178 52.381 0.00 0.00 0.00 2.62
4894 5847 1.546476 GTCGAGCTTGGAGAGGAGAAA 59.454 52.381 0.00 0.00 0.00 2.52
4895 5848 1.178276 GTCGAGCTTGGAGAGGAGAA 58.822 55.000 0.00 0.00 0.00 2.87
4896 5849 0.681564 GGTCGAGCTTGGAGAGGAGA 60.682 60.000 7.51 0.00 0.00 3.71
4897 5850 0.682855 AGGTCGAGCTTGGAGAGGAG 60.683 60.000 12.24 0.00 0.00 3.69
4898 5851 0.681564 GAGGTCGAGCTTGGAGAGGA 60.682 60.000 19.66 0.00 0.00 3.71
4899 5852 1.671901 GGAGGTCGAGCTTGGAGAGG 61.672 65.000 19.66 0.00 0.00 3.69
4900 5853 0.967887 TGGAGGTCGAGCTTGGAGAG 60.968 60.000 19.66 0.00 0.00 3.20
4901 5854 0.541998 TTGGAGGTCGAGCTTGGAGA 60.542 55.000 19.66 1.00 0.00 3.71
4902 5855 0.108424 CTTGGAGGTCGAGCTTGGAG 60.108 60.000 19.66 12.32 0.00 3.86
4903 5856 1.975327 CTTGGAGGTCGAGCTTGGA 59.025 57.895 19.66 6.59 0.00 3.53
4904 5857 1.743252 GCTTGGAGGTCGAGCTTGG 60.743 63.158 19.66 10.10 46.85 3.61
4905 5858 3.882025 GCTTGGAGGTCGAGCTTG 58.118 61.111 19.66 10.48 46.85 4.01
4909 5862 0.539051 AATGGAGCTTGGAGGTCGAG 59.461 55.000 0.00 0.00 43.29 4.04
4910 5863 0.984230 AAATGGAGCTTGGAGGTCGA 59.016 50.000 0.00 0.00 43.29 4.20
4911 5864 1.740025 GAAAATGGAGCTTGGAGGTCG 59.260 52.381 0.00 0.00 43.29 4.79
4912 5865 2.095461 GGAAAATGGAGCTTGGAGGTC 58.905 52.381 0.00 0.00 41.73 3.85
4913 5866 1.713078 AGGAAAATGGAGCTTGGAGGT 59.287 47.619 0.00 0.00 0.00 3.85
4914 5867 2.291153 TGAGGAAAATGGAGCTTGGAGG 60.291 50.000 0.00 0.00 0.00 4.30
4915 5868 3.077484 TGAGGAAAATGGAGCTTGGAG 57.923 47.619 0.00 0.00 0.00 3.86
4916 5869 3.074390 TCTTGAGGAAAATGGAGCTTGGA 59.926 43.478 0.00 0.00 0.00 3.53
4917 5870 3.424703 TCTTGAGGAAAATGGAGCTTGG 58.575 45.455 0.00 0.00 0.00 3.61
4918 5871 4.948621 AGATCTTGAGGAAAATGGAGCTTG 59.051 41.667 0.00 0.00 0.00 4.01
4919 5872 4.948621 CAGATCTTGAGGAAAATGGAGCTT 59.051 41.667 0.00 0.00 0.00 3.74
4920 5873 4.018597 ACAGATCTTGAGGAAAATGGAGCT 60.019 41.667 0.00 0.00 0.00 4.09
4921 5874 4.268359 ACAGATCTTGAGGAAAATGGAGC 58.732 43.478 0.00 0.00 0.00 4.70
4922 5875 5.743117 AGACAGATCTTGAGGAAAATGGAG 58.257 41.667 0.00 0.00 0.00 3.86
4923 5876 5.768980 AGACAGATCTTGAGGAAAATGGA 57.231 39.130 0.00 0.00 0.00 3.41
4924 5877 6.054295 CCTAGACAGATCTTGAGGAAAATGG 58.946 44.000 0.00 0.00 33.84 3.16
4925 5878 6.648192 ACCTAGACAGATCTTGAGGAAAATG 58.352 40.000 13.43 0.00 35.12 2.32
4926 5879 6.882768 ACCTAGACAGATCTTGAGGAAAAT 57.117 37.500 13.43 0.00 35.12 1.82
4927 5880 6.688073 AACCTAGACAGATCTTGAGGAAAA 57.312 37.500 13.43 0.00 35.12 2.29
4928 5881 6.467677 CAAACCTAGACAGATCTTGAGGAAA 58.532 40.000 13.43 0.00 35.12 3.13
4929 5882 5.046304 CCAAACCTAGACAGATCTTGAGGAA 60.046 44.000 13.43 0.00 35.12 3.36
4930 5883 4.467795 CCAAACCTAGACAGATCTTGAGGA 59.532 45.833 13.43 0.00 35.12 3.71
4931 5884 4.764172 CCAAACCTAGACAGATCTTGAGG 58.236 47.826 0.00 0.00 36.91 3.86
4932 5885 4.187694 GCCAAACCTAGACAGATCTTGAG 58.812 47.826 0.00 0.00 36.29 3.02
4933 5886 3.368427 CGCCAAACCTAGACAGATCTTGA 60.368 47.826 0.00 0.00 36.29 3.02
4934 5887 2.932614 CGCCAAACCTAGACAGATCTTG 59.067 50.000 0.00 0.00 36.29 3.02
4935 5888 2.093447 CCGCCAAACCTAGACAGATCTT 60.093 50.000 0.00 0.00 36.29 2.40
4936 5889 1.482593 CCGCCAAACCTAGACAGATCT 59.517 52.381 0.00 0.00 39.15 2.75
4937 5890 1.207329 ACCGCCAAACCTAGACAGATC 59.793 52.381 0.00 0.00 0.00 2.75
4938 5891 1.207329 GACCGCCAAACCTAGACAGAT 59.793 52.381 0.00 0.00 0.00 2.90
4939 5892 0.606604 GACCGCCAAACCTAGACAGA 59.393 55.000 0.00 0.00 0.00 3.41
4940 5893 0.391263 GGACCGCCAAACCTAGACAG 60.391 60.000 0.00 0.00 0.00 3.51
4941 5894 1.675219 GGACCGCCAAACCTAGACA 59.325 57.895 0.00 0.00 0.00 3.41
4942 5895 1.447314 CGGACCGCCAAACCTAGAC 60.447 63.158 0.00 0.00 0.00 2.59
4943 5896 1.880819 GACGGACCGCCAAACCTAGA 61.881 60.000 15.39 0.00 0.00 2.43
4944 5897 1.447314 GACGGACCGCCAAACCTAG 60.447 63.158 15.39 0.00 0.00 3.02
4945 5898 1.880819 GAGACGGACCGCCAAACCTA 61.881 60.000 15.39 0.00 0.00 3.08
4946 5899 3.236003 GAGACGGACCGCCAAACCT 62.236 63.158 15.39 1.46 0.00 3.50
4947 5900 2.741211 GAGACGGACCGCCAAACC 60.741 66.667 15.39 0.00 0.00 3.27
4948 5901 3.110178 CGAGACGGACCGCCAAAC 61.110 66.667 15.39 0.62 0.00 2.93
4949 5902 3.562779 GACGAGACGGACCGCCAAA 62.563 63.158 15.39 0.00 0.00 3.28
4950 5903 4.047059 GACGAGACGGACCGCCAA 62.047 66.667 15.39 0.00 0.00 4.52
4965 5918 2.365105 TGAGGATGGGGACGGGAC 60.365 66.667 0.00 0.00 0.00 4.46
4966 5919 2.365105 GTGAGGATGGGGACGGGA 60.365 66.667 0.00 0.00 0.00 5.14
4967 5920 3.480133 GGTGAGGATGGGGACGGG 61.480 72.222 0.00 0.00 0.00 5.28
4968 5921 3.849951 CGGTGAGGATGGGGACGG 61.850 72.222 0.00 0.00 0.00 4.79
4969 5922 4.530857 GCGGTGAGGATGGGGACG 62.531 72.222 0.00 0.00 0.00 4.79
4970 5923 4.176752 GGCGGTGAGGATGGGGAC 62.177 72.222 0.00 0.00 0.00 4.46
4973 5926 4.530857 GACGGCGGTGAGGATGGG 62.531 72.222 13.24 0.00 0.00 4.00
4974 5927 4.873129 CGACGGCGGTGAGGATGG 62.873 72.222 13.24 0.00 0.00 3.51
4975 5928 3.138930 ATCGACGGCGGTGAGGATG 62.139 63.158 12.58 0.00 38.28 3.51
4976 5929 2.833582 ATCGACGGCGGTGAGGAT 60.834 61.111 12.58 3.20 38.28 3.24
4977 5930 3.515286 GATCGACGGCGGTGAGGA 61.515 66.667 12.58 0.58 38.28 3.71
4978 5931 4.907034 CGATCGACGGCGGTGAGG 62.907 72.222 12.58 0.00 38.28 3.86
5021 5974 4.379243 AAGAGGCTCACCGCGGTG 62.379 66.667 45.04 45.04 46.64 4.94
5022 5975 4.379243 CAAGAGGCTCACCGCGGT 62.379 66.667 28.70 28.70 41.37 5.68
5023 5976 3.883744 AACAAGAGGCTCACCGCGG 62.884 63.158 26.86 26.86 41.37 6.46
5024 5977 2.357517 AACAAGAGGCTCACCGCG 60.358 61.111 18.26 0.00 41.37 6.46
5025 5978 0.603975 AAGAACAAGAGGCTCACCGC 60.604 55.000 18.26 1.85 42.76 5.68
5026 5979 2.743636 TAAGAACAAGAGGCTCACCG 57.256 50.000 18.26 6.78 42.76 4.94
5027 5980 4.479786 AGATAAGAACAAGAGGCTCACC 57.520 45.455 18.26 0.57 0.00 4.02
5028 5981 5.729510 AGAAGATAAGAACAAGAGGCTCAC 58.270 41.667 18.26 2.68 0.00 3.51
5029 5982 6.365970 AAGAAGATAAGAACAAGAGGCTCA 57.634 37.500 18.26 0.00 0.00 4.26
5030 5983 6.876257 TGAAAGAAGATAAGAACAAGAGGCTC 59.124 38.462 6.34 6.34 0.00 4.70
5031 5984 6.773638 TGAAAGAAGATAAGAACAAGAGGCT 58.226 36.000 0.00 0.00 0.00 4.58
5032 5985 7.440523 TTGAAAGAAGATAAGAACAAGAGGC 57.559 36.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.