Multiple sequence alignment - TraesCS1D01G299600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G299600 chr1D 100.000 2482 0 0 1 2482 397633723 397636204 0.000000e+00 4584
1 TraesCS1D01G299600 chr1D 99.672 1526 4 1 637 2162 432548423 432549947 0.000000e+00 2789
2 TraesCS1D01G299600 chr1D 86.992 492 55 4 45 527 476459325 476459816 1.680000e-151 545
3 TraesCS1D01G299600 chr5D 99.868 1520 2 0 639 2158 58662969 58661450 0.000000e+00 2796
4 TraesCS1D01G299600 chr5D 99.868 1519 2 0 639 2157 172016773 172018291 0.000000e+00 2795
5 TraesCS1D01G299600 chr5D 99.738 1526 3 1 640 2164 548974533 548976058 0.000000e+00 2795
6 TraesCS1D01G299600 chr2D 99.868 1520 2 0 639 2158 9253352 9254871 0.000000e+00 2796
7 TraesCS1D01G299600 chr2D 99.481 1540 5 3 639 2176 30789480 30791018 0.000000e+00 2796
8 TraesCS1D01G299600 chr2D 88.551 428 48 1 57 483 70946121 70945694 3.660000e-143 518
9 TraesCS1D01G299600 chr3D 99.868 1519 2 0 640 2158 558743763 558742245 0.000000e+00 2795
10 TraesCS1D01G299600 chrUn 99.803 1520 3 0 639 2158 126794672 126796191 0.000000e+00 2791
11 TraesCS1D01G299600 chr6D 99.803 1519 3 0 640 2158 450086796 450085278 0.000000e+00 2789
12 TraesCS1D01G299600 chr6D 86.653 487 59 3 3 483 56836783 56836297 3.630000e-148 534
13 TraesCS1D01G299600 chr1A 84.871 542 62 12 3 525 464090069 464089529 1.690000e-146 529
14 TraesCS1D01G299600 chr1A 93.411 258 15 1 2158 2413 495133685 495133942 5.010000e-102 381
15 TraesCS1D01G299600 chr1A 95.161 124 5 1 514 637 495133579 495133701 7.000000e-46 195
16 TraesCS1D01G299600 chr7D 88.356 438 48 1 46 480 37874099 37874536 7.860000e-145 523
17 TraesCS1D01G299600 chr3B 84.659 528 70 6 3 528 637532454 637532972 1.320000e-142 516
18 TraesCS1D01G299600 chr6B 85.924 476 66 1 3 477 623175452 623175927 7.920000e-140 507
19 TraesCS1D01G299600 chr3A 85.386 479 64 4 3 480 9048891 9049364 2.220000e-135 492
20 TraesCS1D01G299600 chr4D 84.855 482 66 4 3 480 483203135 483202657 1.730000e-131 479
21 TraesCS1D01G299600 chr1B 90.909 231 9 2 2158 2387 533091473 533091692 1.440000e-77 300
22 TraesCS1D01G299600 chr1B 93.277 119 2 3 525 637 533091371 533091489 1.180000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G299600 chr1D 397633723 397636204 2481 False 4584 4584 100.000 1 2482 1 chr1D.!!$F1 2481
1 TraesCS1D01G299600 chr1D 432548423 432549947 1524 False 2789 2789 99.672 637 2162 1 chr1D.!!$F2 1525
2 TraesCS1D01G299600 chr5D 58661450 58662969 1519 True 2796 2796 99.868 639 2158 1 chr5D.!!$R1 1519
3 TraesCS1D01G299600 chr5D 172016773 172018291 1518 False 2795 2795 99.868 639 2157 1 chr5D.!!$F1 1518
4 TraesCS1D01G299600 chr5D 548974533 548976058 1525 False 2795 2795 99.738 640 2164 1 chr5D.!!$F2 1524
5 TraesCS1D01G299600 chr2D 9253352 9254871 1519 False 2796 2796 99.868 639 2158 1 chr2D.!!$F1 1519
6 TraesCS1D01G299600 chr2D 30789480 30791018 1538 False 2796 2796 99.481 639 2176 1 chr2D.!!$F2 1537
7 TraesCS1D01G299600 chr3D 558742245 558743763 1518 True 2795 2795 99.868 640 2158 1 chr3D.!!$R1 1518
8 TraesCS1D01G299600 chrUn 126794672 126796191 1519 False 2791 2791 99.803 639 2158 1 chrUn.!!$F1 1519
9 TraesCS1D01G299600 chr6D 450085278 450086796 1518 True 2789 2789 99.803 640 2158 1 chr6D.!!$R2 1518
10 TraesCS1D01G299600 chr1A 464089529 464090069 540 True 529 529 84.871 3 525 1 chr1A.!!$R1 522
11 TraesCS1D01G299600 chr3B 637532454 637532972 518 False 516 516 84.659 3 528 1 chr3B.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 86 0.041833 TTGGAGGAGGAGGAGGAGTG 59.958 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 2227 2.057137 AACACATTGAGCACACACCT 57.943 45.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.418908 ATGGGGCTAACTCGGGATGG 61.419 60.000 0.00 0.00 0.00 3.51
71 72 0.338120 AGTTGGAGGAGGAGGAGGAG 59.662 60.000 0.00 0.00 0.00 3.69
72 85 0.041982 GTTGGAGGAGGAGGAGGAGT 59.958 60.000 0.00 0.00 0.00 3.85
73 86 0.041833 TTGGAGGAGGAGGAGGAGTG 59.958 60.000 0.00 0.00 0.00 3.51
126 139 1.139734 GGCGACGAAGATCTGCAGA 59.860 57.895 20.79 20.79 0.00 4.26
239 252 1.443828 GGAGGAGGCGGAGATGTTC 59.556 63.158 0.00 0.00 0.00 3.18
252 265 3.495100 GGAGATGTTCGCCTACATGGATT 60.495 47.826 0.00 0.00 38.80 3.01
255 268 4.588951 AGATGTTCGCCTACATGGATTAGA 59.411 41.667 0.00 0.00 38.80 2.10
278 291 2.068821 GCAGGAGGAGGATGAGCCA 61.069 63.158 0.00 0.00 40.02 4.75
295 308 3.756783 AGAGCCCTCCTACCCGCT 61.757 66.667 0.00 0.00 0.00 5.52
301 314 2.124236 CTCCTACCCGCTCGTCCT 60.124 66.667 0.00 0.00 0.00 3.85
324 337 4.728102 CGCCCAGCACCGTCGTTA 62.728 66.667 0.00 0.00 0.00 3.18
325 338 2.813908 GCCCAGCACCGTCGTTAG 60.814 66.667 0.00 0.00 0.00 2.34
328 341 2.642254 CCAGCACCGTCGTTAGGGA 61.642 63.158 0.00 0.00 34.59 4.20
337 350 1.386533 GTCGTTAGGGACATCTCCGA 58.613 55.000 0.00 0.00 37.46 4.55
356 369 1.598601 GACGACGAAGAGTAGCTAGGG 59.401 57.143 0.00 0.00 0.00 3.53
375 388 7.180051 AGCTAGGGTAGTACGTAGATGTAGTAT 59.820 40.741 10.93 0.00 33.91 2.12
376 389 7.277539 GCTAGGGTAGTACGTAGATGTAGTATG 59.722 44.444 10.93 0.00 33.91 2.39
412 426 7.953005 TTCATGCTTTGTATGGATTTAGGAA 57.047 32.000 0.00 0.00 0.00 3.36
431 445 6.382869 AGGAAATGAAATATGAAAGAGGCG 57.617 37.500 0.00 0.00 0.00 5.52
432 446 5.300286 AGGAAATGAAATATGAAAGAGGCGG 59.700 40.000 0.00 0.00 0.00 6.13
433 447 5.299279 GGAAATGAAATATGAAAGAGGCGGA 59.701 40.000 0.00 0.00 0.00 5.54
434 448 6.015940 GGAAATGAAATATGAAAGAGGCGGAT 60.016 38.462 0.00 0.00 0.00 4.18
435 449 7.174946 GGAAATGAAATATGAAAGAGGCGGATA 59.825 37.037 0.00 0.00 0.00 2.59
436 450 7.440523 AATGAAATATGAAAGAGGCGGATAC 57.559 36.000 0.00 0.00 0.00 2.24
437 451 5.924356 TGAAATATGAAAGAGGCGGATACA 58.076 37.500 0.00 0.00 0.00 2.29
438 452 6.353323 TGAAATATGAAAGAGGCGGATACAA 58.647 36.000 0.00 0.00 0.00 2.41
439 453 6.826231 TGAAATATGAAAGAGGCGGATACAAA 59.174 34.615 0.00 0.00 0.00 2.83
440 454 6.867662 AATATGAAAGAGGCGGATACAAAG 57.132 37.500 0.00 0.00 0.00 2.77
441 455 3.695830 TGAAAGAGGCGGATACAAAGT 57.304 42.857 0.00 0.00 0.00 2.66
442 456 3.334691 TGAAAGAGGCGGATACAAAGTG 58.665 45.455 0.00 0.00 0.00 3.16
443 457 2.403252 AAGAGGCGGATACAAAGTGG 57.597 50.000 0.00 0.00 0.00 4.00
444 458 1.276622 AGAGGCGGATACAAAGTGGT 58.723 50.000 0.00 0.00 0.00 4.16
445 459 1.628846 AGAGGCGGATACAAAGTGGTT 59.371 47.619 0.00 0.00 0.00 3.67
446 460 2.835764 AGAGGCGGATACAAAGTGGTTA 59.164 45.455 0.00 0.00 0.00 2.85
447 461 3.262405 AGAGGCGGATACAAAGTGGTTAA 59.738 43.478 0.00 0.00 0.00 2.01
448 462 4.080526 AGAGGCGGATACAAAGTGGTTAAT 60.081 41.667 0.00 0.00 0.00 1.40
449 463 4.595986 AGGCGGATACAAAGTGGTTAATT 58.404 39.130 0.00 0.00 0.00 1.40
450 464 5.014202 AGGCGGATACAAAGTGGTTAATTT 58.986 37.500 0.00 0.00 0.00 1.82
451 465 6.181908 AGGCGGATACAAAGTGGTTAATTTA 58.818 36.000 0.00 0.00 0.00 1.40
452 466 6.660094 AGGCGGATACAAAGTGGTTAATTTAA 59.340 34.615 0.00 0.00 0.00 1.52
453 467 6.970613 GGCGGATACAAAGTGGTTAATTTAAG 59.029 38.462 0.00 0.00 0.00 1.85
454 468 7.148205 GGCGGATACAAAGTGGTTAATTTAAGA 60.148 37.037 0.00 0.00 0.00 2.10
455 469 8.403236 GCGGATACAAAGTGGTTAATTTAAGAT 58.597 33.333 0.00 0.00 0.00 2.40
456 470 9.716507 CGGATACAAAGTGGTTAATTTAAGATG 57.283 33.333 0.00 0.00 0.00 2.90
459 473 9.855021 ATACAAAGTGGTTAATTTAAGATGTGC 57.145 29.630 0.00 0.00 0.00 4.57
460 474 7.151976 ACAAAGTGGTTAATTTAAGATGTGCC 58.848 34.615 0.00 0.00 0.00 5.01
461 475 5.914898 AGTGGTTAATTTAAGATGTGCCC 57.085 39.130 0.00 0.00 0.00 5.36
462 476 4.398044 AGTGGTTAATTTAAGATGTGCCCG 59.602 41.667 0.00 0.00 0.00 6.13
463 477 3.697045 TGGTTAATTTAAGATGTGCCCGG 59.303 43.478 0.00 0.00 0.00 5.73
464 478 3.697542 GGTTAATTTAAGATGTGCCCGGT 59.302 43.478 0.00 0.00 0.00 5.28
465 479 4.201980 GGTTAATTTAAGATGTGCCCGGTC 60.202 45.833 0.00 0.00 0.00 4.79
466 480 2.799126 ATTTAAGATGTGCCCGGTCA 57.201 45.000 0.00 0.00 0.00 4.02
467 481 2.107950 TTTAAGATGTGCCCGGTCAG 57.892 50.000 0.00 0.00 0.00 3.51
468 482 0.981183 TTAAGATGTGCCCGGTCAGT 59.019 50.000 0.00 0.00 0.00 3.41
469 483 0.249120 TAAGATGTGCCCGGTCAGTG 59.751 55.000 0.00 0.00 0.00 3.66
470 484 3.127533 GATGTGCCCGGTCAGTGC 61.128 66.667 0.00 0.00 0.00 4.40
471 485 4.722700 ATGTGCCCGGTCAGTGCC 62.723 66.667 0.00 0.00 0.00 5.01
490 504 4.944372 GCGGACGGGCGTATGAGG 62.944 72.222 0.00 0.00 0.00 3.86
491 505 3.214123 CGGACGGGCGTATGAGGA 61.214 66.667 0.00 0.00 0.00 3.71
492 506 2.561956 CGGACGGGCGTATGAGGAT 61.562 63.158 0.00 0.00 0.00 3.24
493 507 1.289380 GGACGGGCGTATGAGGATC 59.711 63.158 0.00 0.00 0.00 3.36
494 508 1.289380 GACGGGCGTATGAGGATCC 59.711 63.158 2.48 2.48 0.00 3.36
495 509 2.258591 CGGGCGTATGAGGATCCG 59.741 66.667 5.98 0.00 0.00 4.18
496 510 2.657237 GGGCGTATGAGGATCCGG 59.343 66.667 5.98 0.00 0.00 5.14
497 511 1.906824 GGGCGTATGAGGATCCGGA 60.907 63.158 6.61 6.61 0.00 5.14
498 512 1.258445 GGGCGTATGAGGATCCGGAT 61.258 60.000 19.21 19.21 0.00 4.18
499 513 0.608640 GGCGTATGAGGATCCGGATT 59.391 55.000 20.22 2.64 0.00 3.01
500 514 1.002087 GGCGTATGAGGATCCGGATTT 59.998 52.381 20.22 10.40 0.00 2.17
501 515 2.069273 GCGTATGAGGATCCGGATTTG 58.931 52.381 20.22 3.85 0.00 2.32
502 516 2.069273 CGTATGAGGATCCGGATTTGC 58.931 52.381 20.22 11.12 0.00 3.68
503 517 2.547855 CGTATGAGGATCCGGATTTGCA 60.548 50.000 20.22 16.41 0.00 4.08
504 518 2.734755 ATGAGGATCCGGATTTGCAA 57.265 45.000 20.22 4.32 0.00 4.08
505 519 2.505650 TGAGGATCCGGATTTGCAAA 57.494 45.000 20.22 15.44 0.00 3.68
506 520 2.368439 TGAGGATCCGGATTTGCAAAG 58.632 47.619 20.22 3.89 0.00 2.77
507 521 2.290896 TGAGGATCCGGATTTGCAAAGT 60.291 45.455 20.22 5.95 0.00 2.66
508 522 2.356069 GAGGATCCGGATTTGCAAAGTC 59.644 50.000 20.22 13.97 0.00 3.01
517 531 4.088823 GATTTGCAAAGTCCTGCTGTAG 57.911 45.455 18.19 0.00 43.07 2.74
518 532 2.928801 TTGCAAAGTCCTGCTGTAGA 57.071 45.000 0.00 0.00 43.07 2.59
519 533 3.423539 TTGCAAAGTCCTGCTGTAGAT 57.576 42.857 0.00 0.00 43.07 1.98
520 534 2.703416 TGCAAAGTCCTGCTGTAGATG 58.297 47.619 0.00 0.00 43.07 2.90
521 535 1.399791 GCAAAGTCCTGCTGTAGATGC 59.600 52.381 0.00 0.00 39.34 3.91
522 536 2.938756 GCAAAGTCCTGCTGTAGATGCT 60.939 50.000 0.00 0.00 39.34 3.79
523 537 2.935201 CAAAGTCCTGCTGTAGATGCTC 59.065 50.000 0.00 0.00 0.00 4.26
524 538 2.157640 AGTCCTGCTGTAGATGCTCT 57.842 50.000 0.00 0.00 0.00 4.09
525 539 2.465813 AGTCCTGCTGTAGATGCTCTT 58.534 47.619 0.00 0.00 0.00 2.85
526 540 3.636679 AGTCCTGCTGTAGATGCTCTTA 58.363 45.455 0.00 0.00 0.00 2.10
527 541 3.383185 AGTCCTGCTGTAGATGCTCTTAC 59.617 47.826 0.00 0.00 0.00 2.34
528 542 3.383185 GTCCTGCTGTAGATGCTCTTACT 59.617 47.826 0.00 0.00 0.00 2.24
529 543 3.382865 TCCTGCTGTAGATGCTCTTACTG 59.617 47.826 0.00 0.00 0.00 2.74
530 544 3.122297 CTGCTGTAGATGCTCTTACTGC 58.878 50.000 13.06 13.06 37.71 4.40
531 545 2.762887 TGCTGTAGATGCTCTTACTGCT 59.237 45.455 17.48 0.00 37.95 4.24
532 546 3.122297 GCTGTAGATGCTCTTACTGCTG 58.878 50.000 12.83 0.00 35.46 4.41
533 547 3.430098 GCTGTAGATGCTCTTACTGCTGT 60.430 47.826 0.66 0.66 35.46 4.40
534 548 4.111198 CTGTAGATGCTCTTACTGCTGTG 58.889 47.826 6.48 0.00 0.00 3.66
535 549 2.021355 AGATGCTCTTACTGCTGTGC 57.979 50.000 6.48 1.69 0.00 4.57
536 550 1.554160 AGATGCTCTTACTGCTGTGCT 59.446 47.619 6.48 0.00 0.00 4.40
537 551 1.932511 GATGCTCTTACTGCTGTGCTC 59.067 52.381 6.48 0.00 0.00 4.26
538 552 0.972134 TGCTCTTACTGCTGTGCTCT 59.028 50.000 6.48 0.00 0.00 4.09
539 553 1.345741 TGCTCTTACTGCTGTGCTCTT 59.654 47.619 6.48 0.00 0.00 2.85
540 554 1.731160 GCTCTTACTGCTGTGCTCTTG 59.269 52.381 6.48 0.00 0.00 3.02
541 555 2.344950 CTCTTACTGCTGTGCTCTTGG 58.655 52.381 6.48 0.00 0.00 3.61
542 556 0.801251 CTTACTGCTGTGCTCTTGGC 59.199 55.000 6.48 0.00 42.22 4.52
543 557 0.606401 TTACTGCTGTGCTCTTGGCC 60.606 55.000 6.48 0.00 40.92 5.36
544 558 2.786539 TACTGCTGTGCTCTTGGCCG 62.787 60.000 6.48 0.00 40.92 6.13
545 559 3.889134 CTGCTGTGCTCTTGGCCGA 62.889 63.158 0.00 0.00 40.92 5.54
546 560 2.669569 GCTGTGCTCTTGGCCGAA 60.670 61.111 0.00 0.00 40.92 4.30
547 561 2.684843 GCTGTGCTCTTGGCCGAAG 61.685 63.158 0.00 3.26 40.92 3.79
548 562 2.669569 TGTGCTCTTGGCCGAAGC 60.670 61.111 14.96 14.96 40.92 3.86
549 563 2.359230 GTGCTCTTGGCCGAAGCT 60.359 61.111 20.45 0.00 40.92 3.74
550 564 1.968540 GTGCTCTTGGCCGAAGCTT 60.969 57.895 20.45 0.00 40.92 3.74
551 565 1.672356 TGCTCTTGGCCGAAGCTTC 60.672 57.895 16.84 16.84 40.92 3.86
552 566 2.402572 GCTCTTGGCCGAAGCTTCC 61.403 63.158 20.62 8.30 39.73 3.46
553 567 1.003355 CTCTTGGCCGAAGCTTCCA 60.003 57.895 20.62 11.02 39.73 3.53
554 568 1.301677 CTCTTGGCCGAAGCTTCCAC 61.302 60.000 20.62 12.36 39.73 4.02
555 569 2.282180 TTGGCCGAAGCTTCCACC 60.282 61.111 20.62 20.58 39.73 4.61
556 570 4.697756 TGGCCGAAGCTTCCACCG 62.698 66.667 20.62 9.51 39.73 4.94
557 571 4.388499 GGCCGAAGCTTCCACCGA 62.388 66.667 20.62 0.00 39.73 4.69
558 572 2.815647 GCCGAAGCTTCCACCGAG 60.816 66.667 20.62 5.39 35.50 4.63
559 573 2.970639 CCGAAGCTTCCACCGAGA 59.029 61.111 20.62 0.00 0.00 4.04
560 574 1.153745 CCGAAGCTTCCACCGAGAG 60.154 63.158 20.62 3.93 0.00 3.20
582 596 4.293648 CACGCACGGGTGACAGGA 62.294 66.667 4.58 0.00 40.38 3.86
583 597 4.295119 ACGCACGGGTGACAGGAC 62.295 66.667 4.58 0.00 0.00 3.85
584 598 3.991051 CGCACGGGTGACAGGACT 61.991 66.667 2.38 0.00 0.00 3.85
585 599 2.048127 GCACGGGTGACAGGACTC 60.048 66.667 2.38 0.00 0.00 3.36
586 600 2.258591 CACGGGTGACAGGACTCG 59.741 66.667 0.00 0.00 45.73 4.18
587 601 2.989824 ACGGGTGACAGGACTCGG 60.990 66.667 0.00 0.00 44.49 4.63
588 602 3.760035 CGGGTGACAGGACTCGGG 61.760 72.222 0.00 0.00 36.11 5.14
589 603 2.283676 GGGTGACAGGACTCGGGA 60.284 66.667 0.00 0.00 0.00 5.14
590 604 2.352032 GGGTGACAGGACTCGGGAG 61.352 68.421 0.00 0.00 0.00 4.30
591 605 2.574399 GTGACAGGACTCGGGAGC 59.426 66.667 0.00 0.00 0.00 4.70
592 606 2.680352 TGACAGGACTCGGGAGCC 60.680 66.667 0.00 0.00 0.00 4.70
593 607 2.680352 GACAGGACTCGGGAGCCA 60.680 66.667 0.00 0.00 0.00 4.75
594 608 2.203788 ACAGGACTCGGGAGCCAA 60.204 61.111 0.00 0.00 0.00 4.52
595 609 1.613630 ACAGGACTCGGGAGCCAAT 60.614 57.895 0.00 0.00 0.00 3.16
596 610 1.144936 CAGGACTCGGGAGCCAATC 59.855 63.158 0.00 0.00 0.00 2.67
597 611 2.107141 GGACTCGGGAGCCAATCG 59.893 66.667 0.00 0.00 0.00 3.34
598 612 2.107141 GACTCGGGAGCCAATCGG 59.893 66.667 0.00 0.00 0.00 4.18
610 624 3.781307 AATCGGCGGTGGCAGCTA 61.781 61.111 15.48 0.00 42.47 3.32
611 625 4.530857 ATCGGCGGTGGCAGCTAC 62.531 66.667 15.48 0.00 42.47 3.58
630 644 1.545759 CGCGGCCGTATATATGTCTG 58.454 55.000 28.70 0.00 0.00 3.51
631 645 1.135489 CGCGGCCGTATATATGTCTGT 60.135 52.381 28.70 0.00 0.00 3.41
632 646 2.527100 GCGGCCGTATATATGTCTGTC 58.473 52.381 28.70 0.00 0.00 3.51
633 647 2.163815 GCGGCCGTATATATGTCTGTCT 59.836 50.000 28.70 0.00 0.00 3.41
634 648 3.731264 GCGGCCGTATATATGTCTGTCTC 60.731 52.174 28.70 0.00 0.00 3.36
635 649 3.181499 CGGCCGTATATATGTCTGTCTCC 60.181 52.174 19.50 0.00 0.00 3.71
636 650 3.130693 GGCCGTATATATGTCTGTCTCCC 59.869 52.174 0.00 0.00 0.00 4.30
637 651 4.017808 GCCGTATATATGTCTGTCTCCCT 58.982 47.826 0.00 0.00 0.00 4.20
2083 2227 0.913934 TCCTGGTTATGCAGAGGCCA 60.914 55.000 5.01 6.55 40.13 5.36
2158 2302 5.545063 AAATCCACCCTTTGTCGAAAAAT 57.455 34.783 0.15 0.00 0.00 1.82
2162 2306 8.533569 AATCCACCCTTTGTCGAAAAATATAT 57.466 30.769 0.15 0.00 0.00 0.86
2167 2311 7.910162 CACCCTTTGTCGAAAAATATATGTCTG 59.090 37.037 0.15 0.00 0.00 3.51
2170 2314 8.883731 CCTTTGTCGAAAAATATATGTCTGTCT 58.116 33.333 0.15 0.00 0.00 3.41
2172 2316 8.420374 TTGTCGAAAAATATATGTCTGTCTCC 57.580 34.615 0.00 0.00 0.00 3.71
2174 2318 6.144080 GTCGAAAAATATATGTCTGTCTCCCG 59.856 42.308 0.00 0.00 0.00 5.14
2176 2320 6.494666 AAAAATATATGTCTGTCTCCCGGA 57.505 37.500 0.73 0.00 0.00 5.14
2177 2321 6.688073 AAAATATATGTCTGTCTCCCGGAT 57.312 37.500 0.73 0.00 0.00 4.18
2178 2322 6.688073 AAATATATGTCTGTCTCCCGGATT 57.312 37.500 0.73 0.00 0.00 3.01
2179 2323 5.667539 ATATATGTCTGTCTCCCGGATTG 57.332 43.478 0.73 0.00 0.00 2.67
2180 2324 0.179000 ATGTCTGTCTCCCGGATTGC 59.821 55.000 0.73 0.00 0.00 3.56
2181 2325 1.191489 TGTCTGTCTCCCGGATTGCA 61.191 55.000 0.73 0.00 0.00 4.08
2182 2326 0.460987 GTCTGTCTCCCGGATTGCAG 60.461 60.000 0.73 6.36 0.00 4.41
2183 2327 1.817099 CTGTCTCCCGGATTGCAGC 60.817 63.158 0.73 0.00 0.00 5.25
2184 2328 2.249413 CTGTCTCCCGGATTGCAGCT 62.249 60.000 0.73 0.00 0.00 4.24
2185 2329 1.078143 GTCTCCCGGATTGCAGCTT 60.078 57.895 0.73 0.00 0.00 3.74
2186 2330 1.092345 GTCTCCCGGATTGCAGCTTC 61.092 60.000 0.73 0.00 0.00 3.86
2187 2331 2.125147 TCCCGGATTGCAGCTTCG 60.125 61.111 0.73 0.00 0.00 3.79
2188 2332 3.204827 CCCGGATTGCAGCTTCGG 61.205 66.667 0.73 10.39 40.32 4.30
2189 2333 3.204827 CCGGATTGCAGCTTCGGG 61.205 66.667 9.65 7.61 37.35 5.14
2190 2334 2.125147 CGGATTGCAGCTTCGGGA 60.125 61.111 0.00 0.00 0.00 5.14
2191 2335 2.464459 CGGATTGCAGCTTCGGGAC 61.464 63.158 0.00 0.00 0.00 4.46
2192 2336 2.115291 GGATTGCAGCTTCGGGACC 61.115 63.158 0.00 0.00 0.00 4.46
2193 2337 2.436646 ATTGCAGCTTCGGGACCG 60.437 61.111 3.96 3.96 41.35 4.79
2194 2338 3.976701 ATTGCAGCTTCGGGACCGG 62.977 63.158 11.27 0.00 40.25 5.28
2198 2342 4.772231 AGCTTCGGGACCGGGCTA 62.772 66.667 22.71 0.00 42.74 3.93
2199 2343 4.222847 GCTTCGGGACCGGGCTAG 62.223 72.222 7.57 0.59 40.25 3.42
2200 2344 2.758737 CTTCGGGACCGGGCTAGT 60.759 66.667 7.57 0.00 40.25 2.57
2201 2345 1.454479 CTTCGGGACCGGGCTAGTA 60.454 63.158 7.57 0.00 40.25 1.82
2202 2346 0.826672 CTTCGGGACCGGGCTAGTAT 60.827 60.000 7.57 0.00 40.25 2.12
2203 2347 0.825010 TTCGGGACCGGGCTAGTATC 60.825 60.000 7.57 0.00 40.25 2.24
2204 2348 1.529948 CGGGACCGGGCTAGTATCA 60.530 63.158 7.57 0.00 35.56 2.15
2205 2349 0.898789 CGGGACCGGGCTAGTATCAT 60.899 60.000 7.57 0.00 35.56 2.45
2206 2350 0.896226 GGGACCGGGCTAGTATCATC 59.104 60.000 7.57 0.00 0.00 2.92
2207 2351 1.629043 GGACCGGGCTAGTATCATCA 58.371 55.000 7.57 0.00 0.00 3.07
2208 2352 2.180276 GGACCGGGCTAGTATCATCAT 58.820 52.381 7.57 0.00 0.00 2.45
2209 2353 2.166664 GGACCGGGCTAGTATCATCATC 59.833 54.545 7.57 0.00 0.00 2.92
2210 2354 3.093057 GACCGGGCTAGTATCATCATCT 58.907 50.000 6.32 0.00 0.00 2.90
2211 2355 2.828520 ACCGGGCTAGTATCATCATCTG 59.171 50.000 6.32 0.00 0.00 2.90
2212 2356 2.167281 CCGGGCTAGTATCATCATCTGG 59.833 54.545 0.00 0.00 0.00 3.86
2213 2357 2.417924 CGGGCTAGTATCATCATCTGGC 60.418 54.545 0.00 0.00 35.49 4.85
2214 2358 3.258971 GGCTAGTATCATCATCTGGCC 57.741 52.381 0.00 0.00 45.40 5.36
2215 2359 2.417924 GGCTAGTATCATCATCTGGCCG 60.418 54.545 0.00 0.00 43.53 6.13
2216 2360 2.232452 GCTAGTATCATCATCTGGCCGT 59.768 50.000 0.00 0.00 31.25 5.68
2217 2361 3.306364 GCTAGTATCATCATCTGGCCGTT 60.306 47.826 0.00 0.00 31.25 4.44
2218 2362 3.117491 AGTATCATCATCTGGCCGTTG 57.883 47.619 0.00 0.00 0.00 4.10
2219 2363 1.532868 GTATCATCATCTGGCCGTTGC 59.467 52.381 0.00 0.00 0.00 4.17
2220 2364 0.107066 ATCATCATCTGGCCGTTGCA 60.107 50.000 0.00 0.00 40.13 4.08
2221 2365 0.745486 TCATCATCTGGCCGTTGCAG 60.745 55.000 0.00 0.00 40.13 4.41
2222 2366 1.028330 CATCATCTGGCCGTTGCAGT 61.028 55.000 0.00 0.00 40.13 4.40
2223 2367 1.028330 ATCATCTGGCCGTTGCAGTG 61.028 55.000 0.00 0.00 40.13 3.66
2224 2368 3.058160 ATCTGGCCGTTGCAGTGC 61.058 61.111 8.58 8.58 40.13 4.40
2236 2380 3.055719 CAGTGCGGGCCGTCAAAT 61.056 61.111 28.82 14.38 0.00 2.32
2237 2381 2.282180 AGTGCGGGCCGTCAAATT 60.282 55.556 28.82 11.68 0.00 1.82
2238 2382 1.003112 AGTGCGGGCCGTCAAATTA 60.003 52.632 28.82 2.58 0.00 1.40
2239 2383 0.393808 AGTGCGGGCCGTCAAATTAT 60.394 50.000 28.82 7.46 0.00 1.28
2240 2384 0.248458 GTGCGGGCCGTCAAATTATG 60.248 55.000 28.82 0.00 0.00 1.90
2241 2385 0.678366 TGCGGGCCGTCAAATTATGT 60.678 50.000 28.82 0.00 0.00 2.29
2242 2386 0.028902 GCGGGCCGTCAAATTATGTC 59.971 55.000 28.82 1.40 0.00 3.06
2243 2387 1.374560 CGGGCCGTCAAATTATGTCA 58.625 50.000 19.97 0.00 0.00 3.58
2244 2388 1.063469 CGGGCCGTCAAATTATGTCAC 59.937 52.381 19.97 0.00 0.00 3.67
2245 2389 1.404035 GGGCCGTCAAATTATGTCACC 59.596 52.381 0.00 0.00 0.00 4.02
2246 2390 2.365582 GGCCGTCAAATTATGTCACCT 58.634 47.619 0.00 0.00 0.00 4.00
2247 2391 2.354821 GGCCGTCAAATTATGTCACCTC 59.645 50.000 0.00 0.00 0.00 3.85
2248 2392 2.030457 GCCGTCAAATTATGTCACCTCG 59.970 50.000 0.00 0.00 0.00 4.63
2249 2393 2.030457 CCGTCAAATTATGTCACCTCGC 59.970 50.000 0.00 0.00 0.00 5.03
2250 2394 2.030457 CGTCAAATTATGTCACCTCGCC 59.970 50.000 0.00 0.00 0.00 5.54
2251 2395 2.354821 GTCAAATTATGTCACCTCGCCC 59.645 50.000 0.00 0.00 0.00 6.13
2252 2396 1.330521 CAAATTATGTCACCTCGCCCG 59.669 52.381 0.00 0.00 0.00 6.13
2253 2397 0.539986 AATTATGTCACCTCGCCCGT 59.460 50.000 0.00 0.00 0.00 5.28
2254 2398 0.104304 ATTATGTCACCTCGCCCGTC 59.896 55.000 0.00 0.00 0.00 4.79
2255 2399 0.968901 TTATGTCACCTCGCCCGTCT 60.969 55.000 0.00 0.00 0.00 4.18
2256 2400 1.381928 TATGTCACCTCGCCCGTCTC 61.382 60.000 0.00 0.00 0.00 3.36
2257 2401 4.131088 GTCACCTCGCCCGTCTCC 62.131 72.222 0.00 0.00 0.00 3.71
2258 2402 4.671590 TCACCTCGCCCGTCTCCA 62.672 66.667 0.00 0.00 0.00 3.86
2259 2403 4.436998 CACCTCGCCCGTCTCCAC 62.437 72.222 0.00 0.00 0.00 4.02
2260 2404 4.680537 ACCTCGCCCGTCTCCACT 62.681 66.667 0.00 0.00 0.00 4.00
2261 2405 3.382832 CCTCGCCCGTCTCCACTT 61.383 66.667 0.00 0.00 0.00 3.16
2262 2406 2.125912 CTCGCCCGTCTCCACTTG 60.126 66.667 0.00 0.00 0.00 3.16
2263 2407 3.649277 CTCGCCCGTCTCCACTTGG 62.649 68.421 0.00 0.00 0.00 3.61
2265 2409 4.021925 GCCCGTCTCCACTTGGCT 62.022 66.667 0.00 0.00 35.95 4.75
2266 2410 2.046892 CCCGTCTCCACTTGGCTG 60.047 66.667 0.00 0.00 34.44 4.85
2267 2411 2.743928 CCGTCTCCACTTGGCTGC 60.744 66.667 0.00 0.00 34.44 5.25
2268 2412 2.031012 CGTCTCCACTTGGCTGCA 59.969 61.111 0.50 0.00 34.44 4.41
2269 2413 1.376424 CGTCTCCACTTGGCTGCAT 60.376 57.895 0.50 0.00 34.44 3.96
2270 2414 1.642037 CGTCTCCACTTGGCTGCATG 61.642 60.000 0.50 0.00 34.44 4.06
2271 2415 1.001764 TCTCCACTTGGCTGCATGG 60.002 57.895 0.50 3.56 34.44 3.66
2272 2416 1.001764 CTCCACTTGGCTGCATGGA 60.002 57.895 0.50 7.89 38.94 3.41
2273 2417 1.303561 TCCACTTGGCTGCATGGAC 60.304 57.895 0.50 0.00 36.30 4.02
2274 2418 1.604308 CCACTTGGCTGCATGGACA 60.604 57.895 0.50 0.00 33.80 4.02
2275 2419 1.180456 CCACTTGGCTGCATGGACAA 61.180 55.000 0.50 0.00 33.80 3.18
2278 2422 3.675995 TTGGCTGCATGGACAAGAT 57.324 47.368 0.50 0.00 29.93 2.40
2279 2423 1.179152 TTGGCTGCATGGACAAGATG 58.821 50.000 0.50 0.00 29.93 2.90
2280 2424 0.038599 TGGCTGCATGGACAAGATGT 59.961 50.000 0.50 0.00 0.00 3.06
2281 2425 1.180029 GGCTGCATGGACAAGATGTT 58.820 50.000 0.50 0.00 0.00 2.71
2282 2426 1.547372 GGCTGCATGGACAAGATGTTT 59.453 47.619 0.50 0.00 0.00 2.83
2283 2427 2.416431 GGCTGCATGGACAAGATGTTTC 60.416 50.000 0.50 0.00 0.00 2.78
2284 2428 2.730090 GCTGCATGGACAAGATGTTTCG 60.730 50.000 0.00 0.00 0.00 3.46
2285 2429 2.485426 CTGCATGGACAAGATGTTTCGT 59.515 45.455 0.00 0.00 0.00 3.85
2286 2430 2.884012 TGCATGGACAAGATGTTTCGTT 59.116 40.909 0.00 0.00 0.00 3.85
2287 2431 3.317711 TGCATGGACAAGATGTTTCGTTT 59.682 39.130 0.00 0.00 0.00 3.60
2288 2432 3.670055 GCATGGACAAGATGTTTCGTTTG 59.330 43.478 0.00 0.00 0.00 2.93
2289 2433 3.980646 TGGACAAGATGTTTCGTTTGG 57.019 42.857 0.00 0.00 0.00 3.28
2290 2434 3.546724 TGGACAAGATGTTTCGTTTGGA 58.453 40.909 0.00 0.00 0.00 3.53
2291 2435 3.314080 TGGACAAGATGTTTCGTTTGGAC 59.686 43.478 0.00 0.00 0.00 4.02
2292 2436 3.564225 GGACAAGATGTTTCGTTTGGACT 59.436 43.478 0.00 0.00 0.00 3.85
2293 2437 4.753107 GGACAAGATGTTTCGTTTGGACTA 59.247 41.667 0.00 0.00 0.00 2.59
2294 2438 5.333875 GGACAAGATGTTTCGTTTGGACTAC 60.334 44.000 0.00 0.00 0.00 2.73
2295 2439 4.514066 ACAAGATGTTTCGTTTGGACTACC 59.486 41.667 0.00 0.00 0.00 3.18
2296 2440 3.671716 AGATGTTTCGTTTGGACTACCC 58.328 45.455 0.00 0.00 34.81 3.69
2297 2441 3.071892 AGATGTTTCGTTTGGACTACCCA 59.928 43.478 0.00 0.00 44.93 4.51
2304 2448 3.009115 TGGACTACCCAGGCAGGC 61.009 66.667 0.00 0.00 40.82 4.85
2305 2449 3.798511 GGACTACCCAGGCAGGCC 61.799 72.222 0.97 0.97 35.39 5.19
2306 2450 4.162690 GACTACCCAGGCAGGCCG 62.163 72.222 4.37 0.00 41.95 6.13
2308 2452 2.762459 CTACCCAGGCAGGCCGTA 60.762 66.667 4.37 0.78 41.95 4.02
2309 2453 2.762459 TACCCAGGCAGGCCGTAG 60.762 66.667 4.37 0.00 41.95 3.51
2310 2454 3.612115 TACCCAGGCAGGCCGTAGT 62.612 63.158 4.37 6.07 41.95 2.73
2311 2455 4.473520 CCCAGGCAGGCCGTAGTG 62.474 72.222 4.37 0.00 41.95 2.74
2312 2456 3.390521 CCAGGCAGGCCGTAGTGA 61.391 66.667 4.37 0.00 41.95 3.41
2313 2457 2.125512 CAGGCAGGCCGTAGTGAC 60.126 66.667 4.37 0.00 41.95 3.67
2314 2458 3.391382 AGGCAGGCCGTAGTGACC 61.391 66.667 4.37 0.00 41.95 4.02
2315 2459 3.391382 GGCAGGCCGTAGTGACCT 61.391 66.667 0.00 0.00 0.00 3.85
2317 2461 2.125512 CAGGCCGTAGTGACCTGC 60.126 66.667 0.00 0.00 44.16 4.85
2318 2462 2.283966 AGGCCGTAGTGACCTGCT 60.284 61.111 0.00 0.00 30.82 4.24
2319 2463 2.125512 GGCCGTAGTGACCTGCTG 60.126 66.667 0.00 0.00 0.00 4.41
2320 2464 2.646175 GGCCGTAGTGACCTGCTGA 61.646 63.158 0.00 0.00 0.00 4.26
2321 2465 1.446272 GCCGTAGTGACCTGCTGAC 60.446 63.158 0.00 0.00 0.00 3.51
2322 2466 1.154016 CCGTAGTGACCTGCTGACG 60.154 63.158 0.00 0.00 0.00 4.35
2323 2467 1.154016 CGTAGTGACCTGCTGACGG 60.154 63.158 0.00 0.00 0.00 4.79
2324 2468 1.863662 CGTAGTGACCTGCTGACGGT 61.864 60.000 0.00 0.00 37.50 4.83
2325 2469 0.388649 GTAGTGACCTGCTGACGGTG 60.389 60.000 0.00 0.00 34.19 4.94
2326 2470 0.538746 TAGTGACCTGCTGACGGTGA 60.539 55.000 0.00 0.00 34.19 4.02
2327 2471 1.069090 GTGACCTGCTGACGGTGAA 59.931 57.895 0.00 0.00 34.19 3.18
2328 2472 1.069090 TGACCTGCTGACGGTGAAC 59.931 57.895 0.00 0.00 34.19 3.18
2329 2473 1.069090 GACCTGCTGACGGTGAACA 59.931 57.895 0.00 0.00 34.19 3.18
2330 2474 0.946221 GACCTGCTGACGGTGAACAG 60.946 60.000 0.00 0.00 34.19 3.16
2331 2475 1.069765 CCTGCTGACGGTGAACAGT 59.930 57.895 0.00 0.00 36.62 3.55
2332 2476 1.224069 CCTGCTGACGGTGAACAGTG 61.224 60.000 0.00 0.00 36.62 3.66
2333 2477 1.835483 CTGCTGACGGTGAACAGTGC 61.835 60.000 0.00 0.00 36.62 4.40
2334 2478 2.607892 GCTGACGGTGAACAGTGCC 61.608 63.158 0.00 0.00 36.62 5.01
2338 2482 2.587753 CGGTGAACAGTGCCGTGT 60.588 61.111 0.00 0.00 40.53 4.49
2339 2483 2.594962 CGGTGAACAGTGCCGTGTC 61.595 63.158 0.00 0.00 40.53 3.67
2340 2484 1.522806 GGTGAACAGTGCCGTGTCA 60.523 57.895 0.00 0.00 0.00 3.58
2341 2485 1.092921 GGTGAACAGTGCCGTGTCAA 61.093 55.000 0.00 0.00 0.00 3.18
2342 2486 0.944386 GTGAACAGTGCCGTGTCAAT 59.056 50.000 0.00 0.00 0.00 2.57
2343 2487 1.069906 GTGAACAGTGCCGTGTCAATC 60.070 52.381 0.00 0.00 0.00 2.67
2344 2488 1.225855 GAACAGTGCCGTGTCAATCA 58.774 50.000 0.00 0.00 0.00 2.57
2345 2489 0.944386 AACAGTGCCGTGTCAATCAC 59.056 50.000 0.00 0.00 43.03 3.06
2346 2490 0.106708 ACAGTGCCGTGTCAATCACT 59.893 50.000 0.00 0.00 44.16 3.41
2347 2491 1.343142 ACAGTGCCGTGTCAATCACTA 59.657 47.619 0.00 0.00 44.16 2.74
2348 2492 1.726791 CAGTGCCGTGTCAATCACTAC 59.273 52.381 0.00 0.00 44.16 2.73
2349 2493 1.343142 AGTGCCGTGTCAATCACTACA 59.657 47.619 0.00 0.00 44.16 2.74
2350 2494 1.459592 GTGCCGTGTCAATCACTACAC 59.540 52.381 0.00 0.00 44.16 2.90
2351 2495 1.076332 GCCGTGTCAATCACTACACC 58.924 55.000 0.00 0.00 42.39 4.16
2352 2496 1.337823 GCCGTGTCAATCACTACACCT 60.338 52.381 0.00 0.00 42.39 4.00
2353 2497 2.337583 CCGTGTCAATCACTACACCTG 58.662 52.381 0.00 0.00 42.39 4.00
2354 2498 2.029380 CCGTGTCAATCACTACACCTGA 60.029 50.000 0.00 0.00 42.39 3.86
2355 2499 3.245797 CGTGTCAATCACTACACCTGAG 58.754 50.000 0.00 0.00 42.39 3.35
2356 2500 3.305403 CGTGTCAATCACTACACCTGAGT 60.305 47.826 0.00 0.00 42.39 3.41
2357 2501 4.238514 GTGTCAATCACTACACCTGAGTC 58.761 47.826 0.00 0.00 43.13 3.36
2358 2502 3.057526 TGTCAATCACTACACCTGAGTCG 60.058 47.826 0.00 0.00 0.00 4.18
2359 2503 2.492088 TCAATCACTACACCTGAGTCGG 59.508 50.000 0.00 0.00 0.00 4.79
2360 2504 0.818296 ATCACTACACCTGAGTCGGC 59.182 55.000 0.00 0.00 0.00 5.54
2361 2505 0.251209 TCACTACACCTGAGTCGGCT 60.251 55.000 0.00 0.00 0.00 5.52
2362 2506 0.109086 CACTACACCTGAGTCGGCTG 60.109 60.000 0.00 0.00 0.00 4.85
2363 2507 1.251527 ACTACACCTGAGTCGGCTGG 61.252 60.000 0.00 0.00 0.00 4.85
2364 2508 1.228769 TACACCTGAGTCGGCTGGT 60.229 57.895 0.00 0.00 40.26 4.00
2365 2509 1.248785 TACACCTGAGTCGGCTGGTC 61.249 60.000 0.00 0.00 37.93 4.02
2366 2510 3.374402 ACCTGAGTCGGCTGGTCG 61.374 66.667 0.00 0.00 35.48 4.79
2367 2511 3.374402 CCTGAGTCGGCTGGTCGT 61.374 66.667 0.00 0.00 0.00 4.34
2368 2512 2.126307 CTGAGTCGGCTGGTCGTG 60.126 66.667 0.00 0.00 0.00 4.35
2369 2513 4.357947 TGAGTCGGCTGGTCGTGC 62.358 66.667 0.00 0.00 0.00 5.34
2370 2514 4.357947 GAGTCGGCTGGTCGTGCA 62.358 66.667 0.00 0.00 0.00 4.57
2371 2515 3.649277 GAGTCGGCTGGTCGTGCAT 62.649 63.158 0.00 0.00 0.00 3.96
2372 2516 3.490759 GTCGGCTGGTCGTGCATG 61.491 66.667 0.00 0.00 0.00 4.06
2375 2519 3.136123 GGCTGGTCGTGCATGCAT 61.136 61.111 25.64 0.00 0.00 3.96
2376 2520 2.703798 GGCTGGTCGTGCATGCATT 61.704 57.895 25.64 0.00 0.00 3.56
2377 2521 1.515519 GCTGGTCGTGCATGCATTG 60.516 57.895 25.64 19.34 0.00 2.82
2403 2547 4.767255 CCTGGCAGCCACCGACTC 62.767 72.222 11.22 0.00 0.00 3.36
2404 2548 4.007644 CTGGCAGCCACCGACTCA 62.008 66.667 11.22 0.00 0.00 3.41
2405 2549 4.314440 TGGCAGCCACCGACTCAC 62.314 66.667 11.22 0.00 0.00 3.51
2407 2551 4.314440 GCAGCCACCGACTCACCA 62.314 66.667 0.00 0.00 0.00 4.17
2408 2552 2.357517 CAGCCACCGACTCACCAC 60.358 66.667 0.00 0.00 0.00 4.16
2409 2553 3.991051 AGCCACCGACTCACCACG 61.991 66.667 0.00 0.00 0.00 4.94
2410 2554 3.986006 GCCACCGACTCACCACGA 61.986 66.667 0.00 0.00 0.00 4.35
2411 2555 2.049433 CCACCGACTCACCACGAC 60.049 66.667 0.00 0.00 0.00 4.34
2412 2556 2.049433 CACCGACTCACCACGACC 60.049 66.667 0.00 0.00 0.00 4.79
2413 2557 3.300765 ACCGACTCACCACGACCC 61.301 66.667 0.00 0.00 0.00 4.46
2414 2558 2.989824 CCGACTCACCACGACCCT 60.990 66.667 0.00 0.00 0.00 4.34
2415 2559 2.571216 CCGACTCACCACGACCCTT 61.571 63.158 0.00 0.00 0.00 3.95
2416 2560 1.080705 CGACTCACCACGACCCTTC 60.081 63.158 0.00 0.00 0.00 3.46
2417 2561 1.292541 GACTCACCACGACCCTTCC 59.707 63.158 0.00 0.00 0.00 3.46
2418 2562 1.152312 ACTCACCACGACCCTTCCT 60.152 57.895 0.00 0.00 0.00 3.36
2419 2563 1.186267 ACTCACCACGACCCTTCCTC 61.186 60.000 0.00 0.00 0.00 3.71
2420 2564 1.152419 TCACCACGACCCTTCCTCA 60.152 57.895 0.00 0.00 0.00 3.86
2421 2565 0.761323 TCACCACGACCCTTCCTCAA 60.761 55.000 0.00 0.00 0.00 3.02
2422 2566 0.107831 CACCACGACCCTTCCTCAAA 59.892 55.000 0.00 0.00 0.00 2.69
2423 2567 0.841289 ACCACGACCCTTCCTCAAAA 59.159 50.000 0.00 0.00 0.00 2.44
2424 2568 1.213430 ACCACGACCCTTCCTCAAAAA 59.787 47.619 0.00 0.00 0.00 1.94
2447 2591 5.930837 AAAAGAAAAACTCACCATGACCA 57.069 34.783 0.00 0.00 0.00 4.02
2448 2592 5.930837 AAAGAAAAACTCACCATGACCAA 57.069 34.783 0.00 0.00 0.00 3.67
2449 2593 5.930837 AAGAAAAACTCACCATGACCAAA 57.069 34.783 0.00 0.00 0.00 3.28
2450 2594 5.930837 AGAAAAACTCACCATGACCAAAA 57.069 34.783 0.00 0.00 0.00 2.44
2451 2595 5.906073 AGAAAAACTCACCATGACCAAAAG 58.094 37.500 0.00 0.00 0.00 2.27
2452 2596 3.733443 AAACTCACCATGACCAAAAGC 57.267 42.857 0.00 0.00 0.00 3.51
2453 2597 2.363306 ACTCACCATGACCAAAAGCA 57.637 45.000 0.00 0.00 0.00 3.91
2454 2598 2.233271 ACTCACCATGACCAAAAGCAG 58.767 47.619 0.00 0.00 0.00 4.24
2455 2599 2.158623 ACTCACCATGACCAAAAGCAGA 60.159 45.455 0.00 0.00 0.00 4.26
2456 2600 3.087031 CTCACCATGACCAAAAGCAGAT 58.913 45.455 0.00 0.00 0.00 2.90
2457 2601 3.499338 TCACCATGACCAAAAGCAGATT 58.501 40.909 0.00 0.00 0.00 2.40
2458 2602 3.896888 TCACCATGACCAAAAGCAGATTT 59.103 39.130 0.00 0.00 0.00 2.17
2459 2603 5.076182 TCACCATGACCAAAAGCAGATTTA 58.924 37.500 0.00 0.00 0.00 1.40
2460 2604 5.048083 TCACCATGACCAAAAGCAGATTTAC 60.048 40.000 0.00 0.00 0.00 2.01
2461 2605 4.832266 ACCATGACCAAAAGCAGATTTACA 59.168 37.500 0.00 0.00 0.00 2.41
2462 2606 5.047802 ACCATGACCAAAAGCAGATTTACAG 60.048 40.000 0.00 0.00 0.00 2.74
2463 2607 4.503741 TGACCAAAAGCAGATTTACAGC 57.496 40.909 0.00 0.00 0.00 4.40
2464 2608 3.888323 TGACCAAAAGCAGATTTACAGCA 59.112 39.130 0.00 0.00 33.37 4.41
2465 2609 4.229876 GACCAAAAGCAGATTTACAGCAC 58.770 43.478 0.00 0.00 33.37 4.40
2466 2610 3.005791 ACCAAAAGCAGATTTACAGCACC 59.994 43.478 0.00 0.00 33.37 5.01
2467 2611 3.256631 CCAAAAGCAGATTTACAGCACCT 59.743 43.478 0.00 0.00 33.37 4.00
2468 2612 4.262164 CCAAAAGCAGATTTACAGCACCTT 60.262 41.667 0.00 0.00 33.37 3.50
2469 2613 4.773323 AAAGCAGATTTACAGCACCTTC 57.227 40.909 0.00 0.00 33.37 3.46
2470 2614 3.710209 AGCAGATTTACAGCACCTTCT 57.290 42.857 0.00 0.00 33.37 2.85
2471 2615 4.026356 AGCAGATTTACAGCACCTTCTT 57.974 40.909 0.00 0.00 33.37 2.52
2472 2616 4.006319 AGCAGATTTACAGCACCTTCTTC 58.994 43.478 0.00 0.00 33.37 2.87
2473 2617 4.006319 GCAGATTTACAGCACCTTCTTCT 58.994 43.478 0.00 0.00 0.00 2.85
2474 2618 4.457257 GCAGATTTACAGCACCTTCTTCTT 59.543 41.667 0.00 0.00 0.00 2.52
2475 2619 5.048434 GCAGATTTACAGCACCTTCTTCTTT 60.048 40.000 0.00 0.00 0.00 2.52
2476 2620 6.515696 GCAGATTTACAGCACCTTCTTCTTTT 60.516 38.462 0.00 0.00 0.00 2.27
2477 2621 7.080724 CAGATTTACAGCACCTTCTTCTTTTC 58.919 38.462 0.00 0.00 0.00 2.29
2478 2622 5.767816 TTTACAGCACCTTCTTCTTTTCC 57.232 39.130 0.00 0.00 0.00 3.13
2479 2623 2.587522 ACAGCACCTTCTTCTTTTCCC 58.412 47.619 0.00 0.00 0.00 3.97
2480 2624 2.175715 ACAGCACCTTCTTCTTTTCCCT 59.824 45.455 0.00 0.00 0.00 4.20
2481 2625 3.394606 ACAGCACCTTCTTCTTTTCCCTA 59.605 43.478 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.357517 CATGGCGATCCGGGCTAC 60.358 66.667 0.00 0.00 34.14 3.58
15 16 1.418908 CCATCCCGAGTTAGCCCCAT 61.419 60.000 0.00 0.00 0.00 4.00
16 17 2.070039 CCATCCCGAGTTAGCCCCA 61.070 63.158 0.00 0.00 0.00 4.96
24 25 0.760945 GGATCCACTCCATCCCGAGT 60.761 60.000 6.95 0.00 44.26 4.18
28 29 1.459539 TCCGGATCCACTCCATCCC 60.460 63.158 13.41 0.00 45.24 3.85
34 35 0.825840 CTCCTCCTCCGGATCCACTC 60.826 65.000 13.41 0.00 31.43 3.51
71 72 2.764128 TCCTCCGGCTCATCCCAC 60.764 66.667 0.00 0.00 0.00 4.61
72 85 1.944896 TACTCCTCCGGCTCATCCCA 61.945 60.000 0.00 0.00 0.00 4.37
73 86 1.152525 TACTCCTCCGGCTCATCCC 60.153 63.158 0.00 0.00 0.00 3.85
90 103 2.063979 CAGCGTCCCCCACATCCTA 61.064 63.158 0.00 0.00 0.00 2.94
115 128 2.280835 TGCTCCGTCTGCAGATCTT 58.719 52.632 21.47 0.00 35.31 2.40
116 129 4.024717 TGCTCCGTCTGCAGATCT 57.975 55.556 21.47 0.00 35.31 2.75
126 139 4.479993 GATGGGCTGCTGCTCCGT 62.480 66.667 13.44 14.16 39.40 4.69
138 151 1.821061 CGGAGGGAATCGAGGATGGG 61.821 65.000 0.00 0.00 0.00 4.00
239 252 3.763902 CTCGATCTAATCCATGTAGGCG 58.236 50.000 0.00 0.00 37.29 5.52
252 265 1.141185 TCCTCCTCCTGCTCGATCTA 58.859 55.000 0.00 0.00 0.00 1.98
255 268 0.187117 TCATCCTCCTCCTGCTCGAT 59.813 55.000 0.00 0.00 0.00 3.59
278 291 3.742248 GAGCGGGTAGGAGGGCTCT 62.742 68.421 4.74 0.00 46.33 4.09
312 325 1.255667 ATGTCCCTAACGACGGTGCT 61.256 55.000 0.00 0.00 35.40 4.40
313 326 0.804933 GATGTCCCTAACGACGGTGC 60.805 60.000 0.00 0.00 35.40 5.01
323 336 0.812811 CGTCGTCGGAGATGTCCCTA 60.813 60.000 2.75 0.00 45.22 3.53
324 337 2.113433 CGTCGTCGGAGATGTCCCT 61.113 63.158 2.75 0.00 45.22 4.20
325 338 1.651240 TTCGTCGTCGGAGATGTCCC 61.651 60.000 2.75 0.00 45.22 4.46
328 341 2.850439 TCTTCGTCGTCGGAGATGT 58.150 52.632 9.06 0.00 45.42 3.06
337 350 1.065564 ACCCTAGCTACTCTTCGTCGT 60.066 52.381 0.00 0.00 0.00 4.34
389 403 7.953005 TTTCCTAAATCCATACAAAGCATGA 57.047 32.000 0.00 0.00 0.00 3.07
406 420 7.013274 CCGCCTCTTTCATATTTCATTTCCTAA 59.987 37.037 0.00 0.00 0.00 2.69
412 426 6.998074 TGTATCCGCCTCTTTCATATTTCATT 59.002 34.615 0.00 0.00 0.00 2.57
420 434 3.941483 CACTTTGTATCCGCCTCTTTCAT 59.059 43.478 0.00 0.00 0.00 2.57
421 435 3.334691 CACTTTGTATCCGCCTCTTTCA 58.665 45.455 0.00 0.00 0.00 2.69
422 436 2.678336 CCACTTTGTATCCGCCTCTTTC 59.322 50.000 0.00 0.00 0.00 2.62
423 437 2.039879 ACCACTTTGTATCCGCCTCTTT 59.960 45.455 0.00 0.00 0.00 2.52
424 438 1.628846 ACCACTTTGTATCCGCCTCTT 59.371 47.619 0.00 0.00 0.00 2.85
425 439 1.276622 ACCACTTTGTATCCGCCTCT 58.723 50.000 0.00 0.00 0.00 3.69
426 440 2.109425 AACCACTTTGTATCCGCCTC 57.891 50.000 0.00 0.00 0.00 4.70
427 441 3.706600 TTAACCACTTTGTATCCGCCT 57.293 42.857 0.00 0.00 0.00 5.52
428 442 4.976224 AATTAACCACTTTGTATCCGCC 57.024 40.909 0.00 0.00 0.00 6.13
429 443 7.754625 TCTTAAATTAACCACTTTGTATCCGC 58.245 34.615 0.00 0.00 0.00 5.54
430 444 9.716507 CATCTTAAATTAACCACTTTGTATCCG 57.283 33.333 0.00 0.00 0.00 4.18
433 447 9.855021 GCACATCTTAAATTAACCACTTTGTAT 57.145 29.630 0.00 0.00 0.00 2.29
434 448 8.301002 GGCACATCTTAAATTAACCACTTTGTA 58.699 33.333 0.00 0.00 0.00 2.41
435 449 7.151976 GGCACATCTTAAATTAACCACTTTGT 58.848 34.615 0.00 0.00 0.00 2.83
436 450 6.589907 GGGCACATCTTAAATTAACCACTTTG 59.410 38.462 0.00 0.00 0.00 2.77
437 451 6.571537 CGGGCACATCTTAAATTAACCACTTT 60.572 38.462 0.00 0.00 0.00 2.66
438 452 5.105917 CGGGCACATCTTAAATTAACCACTT 60.106 40.000 0.00 0.00 0.00 3.16
439 453 4.398044 CGGGCACATCTTAAATTAACCACT 59.602 41.667 0.00 0.00 0.00 4.00
440 454 4.439563 CCGGGCACATCTTAAATTAACCAC 60.440 45.833 0.00 0.00 0.00 4.16
441 455 3.697045 CCGGGCACATCTTAAATTAACCA 59.303 43.478 0.00 0.00 0.00 3.67
442 456 3.697542 ACCGGGCACATCTTAAATTAACC 59.302 43.478 6.32 0.00 0.00 2.85
443 457 4.396790 TGACCGGGCACATCTTAAATTAAC 59.603 41.667 5.41 0.00 0.00 2.01
444 458 4.590918 TGACCGGGCACATCTTAAATTAA 58.409 39.130 5.41 0.00 0.00 1.40
445 459 4.196193 CTGACCGGGCACATCTTAAATTA 58.804 43.478 5.41 0.00 0.00 1.40
446 460 3.016736 CTGACCGGGCACATCTTAAATT 58.983 45.455 5.41 0.00 0.00 1.82
447 461 2.026262 ACTGACCGGGCACATCTTAAAT 60.026 45.455 5.41 0.00 0.00 1.40
448 462 1.349688 ACTGACCGGGCACATCTTAAA 59.650 47.619 5.41 0.00 0.00 1.52
449 463 0.981183 ACTGACCGGGCACATCTTAA 59.019 50.000 5.41 0.00 0.00 1.85
450 464 0.249120 CACTGACCGGGCACATCTTA 59.751 55.000 5.41 0.00 0.00 2.10
451 465 1.003355 CACTGACCGGGCACATCTT 60.003 57.895 5.41 0.00 0.00 2.40
452 466 2.665000 CACTGACCGGGCACATCT 59.335 61.111 5.41 0.00 0.00 2.90
453 467 3.127533 GCACTGACCGGGCACATC 61.128 66.667 5.41 0.00 0.00 3.06
454 468 4.722700 GGCACTGACCGGGCACAT 62.723 66.667 5.41 0.00 0.00 3.21
473 487 4.944372 CCTCATACGCCCGTCCGC 62.944 72.222 0.00 0.00 0.00 5.54
474 488 2.473664 GATCCTCATACGCCCGTCCG 62.474 65.000 0.00 0.00 0.00 4.79
475 489 1.289380 GATCCTCATACGCCCGTCC 59.711 63.158 0.00 0.00 0.00 4.79
476 490 1.289380 GGATCCTCATACGCCCGTC 59.711 63.158 3.84 0.00 0.00 4.79
477 491 2.561956 CGGATCCTCATACGCCCGT 61.562 63.158 10.75 0.00 33.02 5.28
478 492 2.258591 CGGATCCTCATACGCCCG 59.741 66.667 10.75 0.00 26.63 6.13
479 493 1.258445 ATCCGGATCCTCATACGCCC 61.258 60.000 12.38 0.00 34.65 6.13
480 494 0.608640 AATCCGGATCCTCATACGCC 59.391 55.000 19.43 0.00 34.65 5.68
481 495 2.069273 CAAATCCGGATCCTCATACGC 58.931 52.381 19.43 0.00 34.65 4.42
482 496 2.069273 GCAAATCCGGATCCTCATACG 58.931 52.381 19.43 1.47 35.92 3.06
483 497 3.126001 TGCAAATCCGGATCCTCATAC 57.874 47.619 19.43 4.13 0.00 2.39
484 498 3.855255 TTGCAAATCCGGATCCTCATA 57.145 42.857 19.43 0.00 0.00 2.15
485 499 2.734755 TTGCAAATCCGGATCCTCAT 57.265 45.000 19.43 0.00 0.00 2.90
486 500 2.290896 ACTTTGCAAATCCGGATCCTCA 60.291 45.455 19.43 12.53 0.00 3.86
487 501 2.356069 GACTTTGCAAATCCGGATCCTC 59.644 50.000 19.43 9.95 0.00 3.71
488 502 2.369394 GACTTTGCAAATCCGGATCCT 58.631 47.619 19.43 5.16 0.00 3.24
489 503 1.405463 GGACTTTGCAAATCCGGATCC 59.595 52.381 19.43 8.42 0.00 3.36
490 504 2.098117 CAGGACTTTGCAAATCCGGATC 59.902 50.000 19.43 5.99 37.60 3.36
491 505 2.094675 CAGGACTTTGCAAATCCGGAT 58.905 47.619 23.33 12.38 37.60 4.18
492 506 1.533625 CAGGACTTTGCAAATCCGGA 58.466 50.000 23.33 6.61 37.60 5.14
493 507 0.109132 GCAGGACTTTGCAAATCCGG 60.109 55.000 23.36 23.36 43.53 5.14
494 508 0.883833 AGCAGGACTTTGCAAATCCG 59.116 50.000 23.33 20.15 46.47 4.18
495 509 1.615392 ACAGCAGGACTTTGCAAATCC 59.385 47.619 22.72 22.72 46.47 3.01
496 510 3.753272 TCTACAGCAGGACTTTGCAAATC 59.247 43.478 13.23 11.89 46.47 2.17
497 511 3.754965 TCTACAGCAGGACTTTGCAAAT 58.245 40.909 13.23 3.03 46.47 2.32
498 512 3.207265 TCTACAGCAGGACTTTGCAAA 57.793 42.857 12.14 12.14 46.47 3.68
499 513 2.928801 TCTACAGCAGGACTTTGCAA 57.071 45.000 0.00 0.00 46.47 4.08
500 514 2.703416 CATCTACAGCAGGACTTTGCA 58.297 47.619 0.52 0.00 46.47 4.08
501 515 1.399791 GCATCTACAGCAGGACTTTGC 59.600 52.381 0.00 0.00 44.41 3.68
502 516 2.935201 GAGCATCTACAGCAGGACTTTG 59.065 50.000 0.00 0.00 0.00 2.77
503 517 3.258971 GAGCATCTACAGCAGGACTTT 57.741 47.619 0.00 0.00 0.00 2.66
504 518 2.977772 GAGCATCTACAGCAGGACTT 57.022 50.000 0.00 0.00 0.00 3.01
517 531 1.932511 GAGCACAGCAGTAAGAGCATC 59.067 52.381 0.00 0.00 0.00 3.91
518 532 1.554160 AGAGCACAGCAGTAAGAGCAT 59.446 47.619 0.00 0.00 0.00 3.79
519 533 0.972134 AGAGCACAGCAGTAAGAGCA 59.028 50.000 0.00 0.00 0.00 4.26
520 534 1.731160 CAAGAGCACAGCAGTAAGAGC 59.269 52.381 0.00 0.00 0.00 4.09
521 535 2.344950 CCAAGAGCACAGCAGTAAGAG 58.655 52.381 0.00 0.00 0.00 2.85
522 536 1.609061 GCCAAGAGCACAGCAGTAAGA 60.609 52.381 0.00 0.00 42.97 2.10
523 537 0.801251 GCCAAGAGCACAGCAGTAAG 59.199 55.000 0.00 0.00 42.97 2.34
524 538 0.606401 GGCCAAGAGCACAGCAGTAA 60.606 55.000 0.00 0.00 46.50 2.24
525 539 1.003355 GGCCAAGAGCACAGCAGTA 60.003 57.895 0.00 0.00 46.50 2.74
526 540 2.282040 GGCCAAGAGCACAGCAGT 60.282 61.111 0.00 0.00 46.50 4.40
527 541 3.429141 CGGCCAAGAGCACAGCAG 61.429 66.667 2.24 0.00 46.50 4.24
528 542 3.474486 TTCGGCCAAGAGCACAGCA 62.474 57.895 2.24 0.00 46.50 4.41
529 543 2.669569 TTCGGCCAAGAGCACAGC 60.670 61.111 2.24 0.00 46.50 4.40
530 544 2.684843 GCTTCGGCCAAGAGCACAG 61.685 63.158 16.28 0.00 46.50 3.66
531 545 2.669569 GCTTCGGCCAAGAGCACA 60.670 61.111 16.28 0.00 46.50 4.57
532 546 1.916697 GAAGCTTCGGCCAAGAGCAC 61.917 60.000 20.21 11.91 46.50 4.40
533 547 1.672356 GAAGCTTCGGCCAAGAGCA 60.672 57.895 20.21 0.00 46.50 4.26
534 548 2.402572 GGAAGCTTCGGCCAAGAGC 61.403 63.158 19.91 14.56 43.01 4.09
535 549 1.003355 TGGAAGCTTCGGCCAAGAG 60.003 57.895 19.91 5.98 43.01 2.85
536 550 1.302511 GTGGAAGCTTCGGCCAAGA 60.303 57.895 19.91 0.00 43.01 3.02
537 551 2.335712 GGTGGAAGCTTCGGCCAAG 61.336 63.158 24.36 7.07 43.01 3.61
538 552 2.282180 GGTGGAAGCTTCGGCCAA 60.282 61.111 24.36 6.67 43.01 4.52
539 553 4.697756 CGGTGGAAGCTTCGGCCA 62.698 66.667 26.81 16.92 43.01 5.36
540 554 4.388499 TCGGTGGAAGCTTCGGCC 62.388 66.667 19.91 20.69 43.01 6.13
541 555 2.815647 CTCGGTGGAAGCTTCGGC 60.816 66.667 19.91 14.21 42.17 5.54
542 556 1.153745 CTCTCGGTGGAAGCTTCGG 60.154 63.158 19.91 9.35 0.00 4.30
543 557 1.153745 CCTCTCGGTGGAAGCTTCG 60.154 63.158 19.91 9.57 0.00 3.79
544 558 0.108567 GACCTCTCGGTGGAAGCTTC 60.109 60.000 18.54 18.54 45.73 3.86
545 559 1.878656 CGACCTCTCGGTGGAAGCTT 61.879 60.000 0.00 0.00 45.73 3.74
546 560 2.344203 CGACCTCTCGGTGGAAGCT 61.344 63.158 0.00 0.00 45.73 3.74
547 561 2.182030 CGACCTCTCGGTGGAAGC 59.818 66.667 0.00 0.00 45.73 3.86
548 562 2.182030 GCGACCTCTCGGTGGAAG 59.818 66.667 0.00 0.00 45.73 3.46
549 563 2.599281 TGCGACCTCTCGGTGGAA 60.599 61.111 0.00 0.00 45.73 3.53
550 564 3.371063 GTGCGACCTCTCGGTGGA 61.371 66.667 0.00 0.00 45.73 4.02
551 565 4.778415 CGTGCGACCTCTCGGTGG 62.778 72.222 0.00 0.00 45.73 4.61
565 579 4.293648 TCCTGTCACCCGTGCGTG 62.294 66.667 0.00 0.00 34.93 5.34
566 580 4.295119 GTCCTGTCACCCGTGCGT 62.295 66.667 0.00 0.00 0.00 5.24
567 581 3.916392 GAGTCCTGTCACCCGTGCG 62.916 68.421 0.00 0.00 0.00 5.34
568 582 2.048127 GAGTCCTGTCACCCGTGC 60.048 66.667 0.00 0.00 0.00 5.34
569 583 2.258591 CGAGTCCTGTCACCCGTG 59.741 66.667 0.00 0.00 0.00 4.94
570 584 2.989824 CCGAGTCCTGTCACCCGT 60.990 66.667 0.00 0.00 0.00 5.28
571 585 3.760035 CCCGAGTCCTGTCACCCG 61.760 72.222 0.00 0.00 0.00 5.28
572 586 2.283676 TCCCGAGTCCTGTCACCC 60.284 66.667 0.00 0.00 0.00 4.61
573 587 3.007973 GCTCCCGAGTCCTGTCACC 62.008 68.421 0.00 0.00 0.00 4.02
574 588 2.574399 GCTCCCGAGTCCTGTCAC 59.426 66.667 0.00 0.00 0.00 3.67
575 589 2.680352 GGCTCCCGAGTCCTGTCA 60.680 66.667 0.00 0.00 0.00 3.58
576 590 1.617947 ATTGGCTCCCGAGTCCTGTC 61.618 60.000 0.00 0.00 30.48 3.51
577 591 1.613630 ATTGGCTCCCGAGTCCTGT 60.614 57.895 0.00 0.00 30.48 4.00
578 592 1.144936 GATTGGCTCCCGAGTCCTG 59.855 63.158 0.00 0.00 30.48 3.86
579 593 2.427245 CGATTGGCTCCCGAGTCCT 61.427 63.158 0.00 0.00 30.48 3.85
580 594 2.107141 CGATTGGCTCCCGAGTCC 59.893 66.667 0.00 0.00 30.48 3.85
581 595 2.107141 CCGATTGGCTCCCGAGTC 59.893 66.667 0.00 0.00 0.00 3.36
593 607 3.781307 TAGCTGCCACCGCCGATT 61.781 61.111 0.00 0.00 0.00 3.34
594 608 4.530857 GTAGCTGCCACCGCCGAT 62.531 66.667 0.00 0.00 0.00 4.18
608 622 2.353889 AGACATATATACGGCCGCGTAG 59.646 50.000 28.58 11.51 0.00 3.51
609 623 2.096335 CAGACATATATACGGCCGCGTA 59.904 50.000 28.58 18.99 0.00 4.42
610 624 1.135489 CAGACATATATACGGCCGCGT 60.135 52.381 28.58 17.17 0.00 6.01
611 625 1.135489 ACAGACATATATACGGCCGCG 60.135 52.381 28.58 1.99 0.00 6.46
612 626 2.163815 AGACAGACATATATACGGCCGC 59.836 50.000 28.58 5.08 0.00 6.53
613 627 3.181499 GGAGACAGACATATATACGGCCG 60.181 52.174 26.86 26.86 0.00 6.13
614 628 3.130693 GGGAGACAGACATATATACGGCC 59.869 52.174 0.00 0.00 0.00 6.13
615 629 4.017808 AGGGAGACAGACATATATACGGC 58.982 47.826 0.00 0.00 0.00 5.68
616 630 7.883391 ATAAGGGAGACAGACATATATACGG 57.117 40.000 0.00 0.00 0.00 4.02
617 631 9.616156 ACTATAAGGGAGACAGACATATATACG 57.384 37.037 0.00 0.00 0.00 3.06
621 635 9.090103 CCAAACTATAAGGGAGACAGACATATA 57.910 37.037 0.00 0.00 0.00 0.86
622 636 7.789831 TCCAAACTATAAGGGAGACAGACATAT 59.210 37.037 0.00 0.00 0.00 1.78
623 637 7.069578 GTCCAAACTATAAGGGAGACAGACATA 59.930 40.741 0.00 0.00 0.00 2.29
624 638 5.964477 TCCAAACTATAAGGGAGACAGACAT 59.036 40.000 0.00 0.00 0.00 3.06
625 639 5.187186 GTCCAAACTATAAGGGAGACAGACA 59.813 44.000 0.00 0.00 0.00 3.41
626 640 5.662456 GTCCAAACTATAAGGGAGACAGAC 58.338 45.833 0.00 0.00 0.00 3.51
627 641 4.401519 CGTCCAAACTATAAGGGAGACAGA 59.598 45.833 0.00 0.00 0.00 3.41
628 642 4.683832 CGTCCAAACTATAAGGGAGACAG 58.316 47.826 0.00 0.00 0.00 3.51
629 643 3.118884 GCGTCCAAACTATAAGGGAGACA 60.119 47.826 0.00 0.00 0.00 3.41
630 644 3.118884 TGCGTCCAAACTATAAGGGAGAC 60.119 47.826 0.00 0.00 0.00 3.36
631 645 3.101437 TGCGTCCAAACTATAAGGGAGA 58.899 45.455 0.00 0.00 0.00 3.71
632 646 3.536956 TGCGTCCAAACTATAAGGGAG 57.463 47.619 0.00 0.00 0.00 4.30
633 647 3.602483 GTTGCGTCCAAACTATAAGGGA 58.398 45.455 0.00 0.00 31.68 4.20
634 648 2.681344 GGTTGCGTCCAAACTATAAGGG 59.319 50.000 0.00 0.00 35.74 3.95
635 649 2.350498 CGGTTGCGTCCAAACTATAAGG 59.650 50.000 0.00 0.00 36.49 2.69
636 650 2.222953 GCGGTTGCGTCCAAACTATAAG 60.223 50.000 0.00 0.00 36.49 1.73
637 651 1.733360 GCGGTTGCGTCCAAACTATAA 59.267 47.619 0.00 0.00 36.49 0.98
2083 2227 2.057137 AACACATTGAGCACACACCT 57.943 45.000 0.00 0.00 0.00 4.00
2158 2302 3.258372 GCAATCCGGGAGACAGACATATA 59.742 47.826 0.00 0.00 0.00 0.86
2162 2306 1.191489 TGCAATCCGGGAGACAGACA 61.191 55.000 0.00 0.00 0.00 3.41
2167 2311 1.078143 AAGCTGCAATCCGGGAGAC 60.078 57.895 0.00 0.00 0.00 3.36
2170 2314 2.125147 CGAAGCTGCAATCCGGGA 60.125 61.111 0.00 0.00 0.00 5.14
2172 2316 3.204827 CCCGAAGCTGCAATCCGG 61.205 66.667 1.02 8.59 39.85 5.14
2174 2318 2.115291 GGTCCCGAAGCTGCAATCC 61.115 63.158 1.02 0.00 0.00 3.01
2176 2320 2.436646 CGGTCCCGAAGCTGCAAT 60.437 61.111 1.02 0.00 42.83 3.56
2177 2321 4.697756 CCGGTCCCGAAGCTGCAA 62.698 66.667 7.42 0.00 42.83 4.08
2181 2325 4.772231 TAGCCCGGTCCCGAAGCT 62.772 66.667 21.36 21.36 45.56 3.74
2182 2326 4.222847 CTAGCCCGGTCCCGAAGC 62.223 72.222 7.42 9.76 42.83 3.86
2183 2327 0.826672 ATACTAGCCCGGTCCCGAAG 60.827 60.000 7.42 0.00 42.83 3.79
2184 2328 0.825010 GATACTAGCCCGGTCCCGAA 60.825 60.000 7.42 0.00 42.83 4.30
2185 2329 1.228367 GATACTAGCCCGGTCCCGA 60.228 63.158 7.42 0.00 42.83 5.14
2186 2330 0.898789 ATGATACTAGCCCGGTCCCG 60.899 60.000 0.00 0.00 39.44 5.14
2187 2331 0.896226 GATGATACTAGCCCGGTCCC 59.104 60.000 0.00 0.00 0.00 4.46
2188 2332 1.629043 TGATGATACTAGCCCGGTCC 58.371 55.000 0.00 0.00 0.00 4.46
2189 2333 3.093057 AGATGATGATACTAGCCCGGTC 58.907 50.000 0.00 0.00 0.00 4.79
2190 2334 2.828520 CAGATGATGATACTAGCCCGGT 59.171 50.000 0.00 0.00 0.00 5.28
2191 2335 2.167281 CCAGATGATGATACTAGCCCGG 59.833 54.545 0.00 0.00 0.00 5.73
2192 2336 2.417924 GCCAGATGATGATACTAGCCCG 60.418 54.545 0.00 0.00 0.00 6.13
2193 2337 2.093235 GGCCAGATGATGATACTAGCCC 60.093 54.545 0.00 0.00 33.63 5.19
2194 2338 2.417924 CGGCCAGATGATGATACTAGCC 60.418 54.545 2.24 0.00 35.68 3.93
2195 2339 2.232452 ACGGCCAGATGATGATACTAGC 59.768 50.000 2.24 0.00 0.00 3.42
2196 2340 4.240888 CAACGGCCAGATGATGATACTAG 58.759 47.826 2.24 0.00 0.00 2.57
2197 2341 3.554960 GCAACGGCCAGATGATGATACTA 60.555 47.826 2.24 0.00 0.00 1.82
2198 2342 2.808202 GCAACGGCCAGATGATGATACT 60.808 50.000 2.24 0.00 0.00 2.12
2199 2343 1.532868 GCAACGGCCAGATGATGATAC 59.467 52.381 2.24 0.00 0.00 2.24
2200 2344 1.140652 TGCAACGGCCAGATGATGATA 59.859 47.619 2.24 0.00 40.13 2.15
2201 2345 0.107066 TGCAACGGCCAGATGATGAT 60.107 50.000 2.24 0.00 40.13 2.45
2202 2346 0.745486 CTGCAACGGCCAGATGATGA 60.745 55.000 2.24 0.00 40.13 2.92
2203 2347 1.028330 ACTGCAACGGCCAGATGATG 61.028 55.000 2.24 0.00 40.13 3.07
2204 2348 1.028330 CACTGCAACGGCCAGATGAT 61.028 55.000 2.24 0.00 40.13 2.45
2205 2349 1.672030 CACTGCAACGGCCAGATGA 60.672 57.895 2.24 0.00 40.13 2.92
2206 2350 2.872557 CACTGCAACGGCCAGATG 59.127 61.111 2.24 1.76 40.13 2.90
2207 2351 3.058160 GCACTGCAACGGCCAGAT 61.058 61.111 2.24 0.00 40.13 2.90
2219 2363 1.302383 TAATTTGACGGCCCGCACTG 61.302 55.000 1.23 0.00 0.00 3.66
2220 2364 0.393808 ATAATTTGACGGCCCGCACT 60.394 50.000 1.23 0.00 0.00 4.40
2221 2365 0.248458 CATAATTTGACGGCCCGCAC 60.248 55.000 1.23 0.00 0.00 5.34
2222 2366 0.678366 ACATAATTTGACGGCCCGCA 60.678 50.000 1.23 0.00 0.00 5.69
2223 2367 0.028902 GACATAATTTGACGGCCCGC 59.971 55.000 1.23 0.00 0.00 6.13
2224 2368 1.063469 GTGACATAATTTGACGGCCCG 59.937 52.381 0.00 0.00 0.00 6.13
2225 2369 1.404035 GGTGACATAATTTGACGGCCC 59.596 52.381 0.00 0.00 0.00 5.80
2226 2370 2.354821 GAGGTGACATAATTTGACGGCC 59.645 50.000 0.00 0.00 0.00 6.13
2227 2371 2.030457 CGAGGTGACATAATTTGACGGC 59.970 50.000 0.00 0.00 0.00 5.68
2228 2372 2.030457 GCGAGGTGACATAATTTGACGG 59.970 50.000 0.00 0.00 0.00 4.79
2229 2373 2.030457 GGCGAGGTGACATAATTTGACG 59.970 50.000 0.00 0.00 0.00 4.35
2230 2374 2.354821 GGGCGAGGTGACATAATTTGAC 59.645 50.000 0.00 0.00 0.00 3.18
2231 2375 2.639065 GGGCGAGGTGACATAATTTGA 58.361 47.619 0.00 0.00 0.00 2.69
2232 2376 1.330521 CGGGCGAGGTGACATAATTTG 59.669 52.381 0.00 0.00 0.00 2.32
2233 2377 1.065709 ACGGGCGAGGTGACATAATTT 60.066 47.619 0.00 0.00 0.00 1.82
2234 2378 0.539986 ACGGGCGAGGTGACATAATT 59.460 50.000 0.00 0.00 0.00 1.40
2235 2379 0.104304 GACGGGCGAGGTGACATAAT 59.896 55.000 0.00 0.00 0.00 1.28
2236 2380 0.968901 AGACGGGCGAGGTGACATAA 60.969 55.000 0.00 0.00 0.00 1.90
2237 2381 1.379443 AGACGGGCGAGGTGACATA 60.379 57.895 0.00 0.00 0.00 2.29
2238 2382 2.680352 AGACGGGCGAGGTGACAT 60.680 61.111 0.00 0.00 0.00 3.06
2239 2383 3.371063 GAGACGGGCGAGGTGACA 61.371 66.667 0.00 0.00 0.00 3.58
2240 2384 4.131088 GGAGACGGGCGAGGTGAC 62.131 72.222 0.00 0.00 0.00 3.67
2241 2385 4.671590 TGGAGACGGGCGAGGTGA 62.672 66.667 0.00 0.00 0.00 4.02
2242 2386 4.436998 GTGGAGACGGGCGAGGTG 62.437 72.222 0.00 0.00 0.00 4.00
2243 2387 4.680537 AGTGGAGACGGGCGAGGT 62.681 66.667 0.00 0.00 0.00 3.85
2244 2388 3.382832 AAGTGGAGACGGGCGAGG 61.383 66.667 0.00 0.00 0.00 4.63
2245 2389 2.125912 CAAGTGGAGACGGGCGAG 60.126 66.667 0.00 0.00 0.00 5.03
2246 2390 3.691342 CCAAGTGGAGACGGGCGA 61.691 66.667 0.00 0.00 37.39 5.54
2248 2392 4.021925 AGCCAAGTGGAGACGGGC 62.022 66.667 0.18 0.00 43.77 6.13
2249 2393 2.046892 CAGCCAAGTGGAGACGGG 60.047 66.667 0.18 0.00 37.39 5.28
2250 2394 2.743928 GCAGCCAAGTGGAGACGG 60.744 66.667 0.18 0.00 37.39 4.79
2251 2395 1.376424 ATGCAGCCAAGTGGAGACG 60.376 57.895 0.18 0.00 37.39 4.18
2252 2396 1.310933 CCATGCAGCCAAGTGGAGAC 61.311 60.000 0.18 0.00 37.39 3.36
2253 2397 1.001764 CCATGCAGCCAAGTGGAGA 60.002 57.895 0.18 0.00 37.39 3.71
2254 2398 1.001764 TCCATGCAGCCAAGTGGAG 60.002 57.895 0.18 0.00 35.91 3.86
2255 2399 1.303561 GTCCATGCAGCCAAGTGGA 60.304 57.895 0.18 0.20 38.37 4.02
2256 2400 1.180456 TTGTCCATGCAGCCAAGTGG 61.180 55.000 0.00 0.00 38.53 4.00
2257 2401 0.242825 CTTGTCCATGCAGCCAAGTG 59.757 55.000 0.00 0.00 31.79 3.16
2258 2402 0.111061 TCTTGTCCATGCAGCCAAGT 59.889 50.000 13.67 0.00 36.53 3.16
2259 2403 1.134367 CATCTTGTCCATGCAGCCAAG 59.866 52.381 9.80 9.80 36.49 3.61
2260 2404 1.179152 CATCTTGTCCATGCAGCCAA 58.821 50.000 0.00 0.00 0.00 4.52
2261 2405 0.038599 ACATCTTGTCCATGCAGCCA 59.961 50.000 0.00 0.00 0.00 4.75
2262 2406 1.180029 AACATCTTGTCCATGCAGCC 58.820 50.000 0.00 0.00 0.00 4.85
2263 2407 2.730090 CGAAACATCTTGTCCATGCAGC 60.730 50.000 0.00 0.00 0.00 5.25
2264 2408 2.485426 ACGAAACATCTTGTCCATGCAG 59.515 45.455 0.00 0.00 0.00 4.41
2265 2409 2.503331 ACGAAACATCTTGTCCATGCA 58.497 42.857 0.00 0.00 0.00 3.96
2266 2410 3.559238 AACGAAACATCTTGTCCATGC 57.441 42.857 0.00 0.00 0.00 4.06
2267 2411 4.023279 TCCAAACGAAACATCTTGTCCATG 60.023 41.667 0.00 0.00 0.00 3.66
2268 2412 4.023193 GTCCAAACGAAACATCTTGTCCAT 60.023 41.667 0.00 0.00 0.00 3.41
2269 2413 3.314080 GTCCAAACGAAACATCTTGTCCA 59.686 43.478 0.00 0.00 0.00 4.02
2270 2414 3.564225 AGTCCAAACGAAACATCTTGTCC 59.436 43.478 0.00 0.00 0.00 4.02
2271 2415 4.813296 AGTCCAAACGAAACATCTTGTC 57.187 40.909 0.00 0.00 0.00 3.18
2272 2416 4.514066 GGTAGTCCAAACGAAACATCTTGT 59.486 41.667 0.00 0.00 0.00 3.16
2273 2417 4.083484 GGGTAGTCCAAACGAAACATCTTG 60.083 45.833 0.00 0.00 35.00 3.02
2274 2418 4.070009 GGGTAGTCCAAACGAAACATCTT 58.930 43.478 0.00 0.00 35.00 2.40
2275 2419 3.071892 TGGGTAGTCCAAACGAAACATCT 59.928 43.478 0.00 0.00 43.84 2.90
2276 2420 3.404899 TGGGTAGTCCAAACGAAACATC 58.595 45.455 0.00 0.00 43.84 3.06
2277 2421 3.408634 CTGGGTAGTCCAAACGAAACAT 58.591 45.455 0.00 0.00 46.51 2.71
2278 2422 2.485835 CCTGGGTAGTCCAAACGAAACA 60.486 50.000 0.00 0.00 46.51 2.83
2279 2423 2.148768 CCTGGGTAGTCCAAACGAAAC 58.851 52.381 0.00 0.00 46.51 2.78
2280 2424 1.543871 GCCTGGGTAGTCCAAACGAAA 60.544 52.381 0.00 0.00 46.51 3.46
2281 2425 0.035739 GCCTGGGTAGTCCAAACGAA 59.964 55.000 0.00 0.00 46.51 3.85
2282 2426 1.122632 TGCCTGGGTAGTCCAAACGA 61.123 55.000 0.00 0.00 46.51 3.85
2283 2427 0.673644 CTGCCTGGGTAGTCCAAACG 60.674 60.000 0.00 0.00 46.51 3.60
2284 2428 0.322546 CCTGCCTGGGTAGTCCAAAC 60.323 60.000 0.00 0.00 46.51 2.93
2285 2429 2.074967 CCTGCCTGGGTAGTCCAAA 58.925 57.895 0.00 0.00 46.51 3.28
2286 2430 2.602676 GCCTGCCTGGGTAGTCCAA 61.603 63.158 0.00 0.00 46.51 3.53
2287 2431 3.009115 GCCTGCCTGGGTAGTCCA 61.009 66.667 0.00 0.00 44.79 4.02
2288 2432 3.798511 GGCCTGCCTGGGTAGTCC 61.799 72.222 0.00 0.00 36.00 3.85
2289 2433 4.162690 CGGCCTGCCTGGGTAGTC 62.163 72.222 6.60 0.00 36.00 2.59
2290 2434 3.612115 TACGGCCTGCCTGGGTAGT 62.612 63.158 6.60 0.00 36.00 2.73
2291 2435 2.762459 TACGGCCTGCCTGGGTAG 60.762 66.667 6.60 0.00 36.00 3.18
2292 2436 2.762459 CTACGGCCTGCCTGGGTA 60.762 66.667 6.60 0.77 36.00 3.69
2294 2438 4.473520 CACTACGGCCTGCCTGGG 62.474 72.222 6.60 0.00 36.00 4.45
2295 2439 3.390521 TCACTACGGCCTGCCTGG 61.391 66.667 6.60 0.00 39.35 4.45
2296 2440 2.125512 GTCACTACGGCCTGCCTG 60.126 66.667 6.60 2.70 0.00 4.85
2297 2441 3.391382 GGTCACTACGGCCTGCCT 61.391 66.667 6.60 0.00 0.00 4.75
2298 2442 3.391382 AGGTCACTACGGCCTGCC 61.391 66.667 0.00 0.00 0.00 4.85
2299 2443 2.125512 CAGGTCACTACGGCCTGC 60.126 66.667 0.00 0.00 42.54 4.85
2301 2445 2.283966 AGCAGGTCACTACGGCCT 60.284 61.111 0.00 0.00 0.00 5.19
2302 2446 2.125512 CAGCAGGTCACTACGGCC 60.126 66.667 0.00 0.00 0.00 6.13
2303 2447 1.446272 GTCAGCAGGTCACTACGGC 60.446 63.158 0.00 0.00 0.00 5.68
2304 2448 1.154016 CGTCAGCAGGTCACTACGG 60.154 63.158 0.00 0.00 0.00 4.02
2305 2449 1.154016 CCGTCAGCAGGTCACTACG 60.154 63.158 0.00 0.00 0.00 3.51
2306 2450 0.388649 CACCGTCAGCAGGTCACTAC 60.389 60.000 0.00 0.00 40.59 2.73
2307 2451 0.538746 TCACCGTCAGCAGGTCACTA 60.539 55.000 0.00 0.00 40.59 2.74
2308 2452 1.399744 TTCACCGTCAGCAGGTCACT 61.400 55.000 0.00 0.00 40.59 3.41
2309 2453 1.069090 TTCACCGTCAGCAGGTCAC 59.931 57.895 0.00 0.00 40.59 3.67
2310 2454 1.069090 GTTCACCGTCAGCAGGTCA 59.931 57.895 0.00 0.00 40.59 4.02
2311 2455 0.946221 CTGTTCACCGTCAGCAGGTC 60.946 60.000 0.00 0.00 40.59 3.85
2312 2456 1.069765 CTGTTCACCGTCAGCAGGT 59.930 57.895 0.00 0.00 43.97 4.00
2313 2457 1.069765 ACTGTTCACCGTCAGCAGG 59.930 57.895 0.00 0.00 35.37 4.85
2314 2458 1.835483 GCACTGTTCACCGTCAGCAG 61.835 60.000 0.00 0.00 35.37 4.24
2315 2459 1.887242 GCACTGTTCACCGTCAGCA 60.887 57.895 0.00 0.00 35.37 4.41
2316 2460 2.607892 GGCACTGTTCACCGTCAGC 61.608 63.158 0.00 0.00 35.37 4.26
2317 2461 2.310233 CGGCACTGTTCACCGTCAG 61.310 63.158 5.70 0.00 42.01 3.51
2318 2462 2.279851 CGGCACTGTTCACCGTCA 60.280 61.111 5.70 0.00 42.01 4.35
2322 2466 1.092921 TTGACACGGCACTGTTCACC 61.093 55.000 0.00 0.00 0.00 4.02
2323 2467 0.944386 ATTGACACGGCACTGTTCAC 59.056 50.000 0.00 0.00 0.00 3.18
2324 2468 1.225855 GATTGACACGGCACTGTTCA 58.774 50.000 0.00 0.00 0.00 3.18
2325 2469 1.069906 GTGATTGACACGGCACTGTTC 60.070 52.381 0.00 0.00 39.78 3.18
2326 2470 0.944386 GTGATTGACACGGCACTGTT 59.056 50.000 0.00 0.00 39.78 3.16
2327 2471 2.616969 GTGATTGACACGGCACTGT 58.383 52.632 0.00 0.00 39.78 3.55
2336 2480 3.057526 CGACTCAGGTGTAGTGATTGACA 60.058 47.826 0.00 0.00 0.00 3.58
2337 2481 3.502920 CGACTCAGGTGTAGTGATTGAC 58.497 50.000 0.00 0.00 0.00 3.18
2338 2482 2.492088 CCGACTCAGGTGTAGTGATTGA 59.508 50.000 0.00 0.00 0.00 2.57
2339 2483 2.881074 CCGACTCAGGTGTAGTGATTG 58.119 52.381 0.00 0.00 0.00 2.67
2340 2484 1.204941 GCCGACTCAGGTGTAGTGATT 59.795 52.381 0.00 0.00 0.00 2.57
2341 2485 0.818296 GCCGACTCAGGTGTAGTGAT 59.182 55.000 0.00 0.00 0.00 3.06
2342 2486 0.251209 AGCCGACTCAGGTGTAGTGA 60.251 55.000 0.00 0.00 0.00 3.41
2343 2487 0.109086 CAGCCGACTCAGGTGTAGTG 60.109 60.000 0.00 0.00 0.00 2.74
2344 2488 1.251527 CCAGCCGACTCAGGTGTAGT 61.252 60.000 0.00 0.00 0.00 2.73
2345 2489 1.251527 ACCAGCCGACTCAGGTGTAG 61.252 60.000 0.00 0.00 32.04 2.74
2346 2490 1.228769 ACCAGCCGACTCAGGTGTA 60.229 57.895 0.00 0.00 32.04 2.90
2347 2491 2.524394 ACCAGCCGACTCAGGTGT 60.524 61.111 0.00 0.00 32.04 4.16
2348 2492 2.262915 GACCAGCCGACTCAGGTG 59.737 66.667 0.00 0.00 33.77 4.00
2349 2493 3.374402 CGACCAGCCGACTCAGGT 61.374 66.667 0.00 0.00 37.00 4.00
2350 2494 3.374402 ACGACCAGCCGACTCAGG 61.374 66.667 0.00 0.00 0.00 3.86
2351 2495 2.126307 CACGACCAGCCGACTCAG 60.126 66.667 0.00 0.00 0.00 3.35
2352 2496 4.357947 GCACGACCAGCCGACTCA 62.358 66.667 0.00 0.00 0.00 3.41
2353 2497 3.649277 ATGCACGACCAGCCGACTC 62.649 63.158 0.00 0.00 0.00 3.36
2354 2498 3.695606 ATGCACGACCAGCCGACT 61.696 61.111 0.00 0.00 0.00 4.18
2355 2499 3.490759 CATGCACGACCAGCCGAC 61.491 66.667 0.00 0.00 0.00 4.79
2358 2502 2.703798 AATGCATGCACGACCAGCC 61.704 57.895 25.37 0.00 0.00 4.85
2359 2503 1.515519 CAATGCATGCACGACCAGC 60.516 57.895 25.37 0.00 0.00 4.85
2360 2504 4.777781 CAATGCATGCACGACCAG 57.222 55.556 25.37 5.51 0.00 4.00
2386 2530 4.767255 GAGTCGGTGGCTGCCAGG 62.767 72.222 24.10 17.21 32.34 4.45
2387 2531 4.007644 TGAGTCGGTGGCTGCCAG 62.008 66.667 24.10 11.94 32.34 4.85
2388 2532 4.314440 GTGAGTCGGTGGCTGCCA 62.314 66.667 19.30 19.30 0.00 4.92
2390 2534 4.314440 TGGTGAGTCGGTGGCTGC 62.314 66.667 0.00 0.00 0.00 5.25
2391 2535 2.357517 GTGGTGAGTCGGTGGCTG 60.358 66.667 0.00 0.00 0.00 4.85
2392 2536 3.991051 CGTGGTGAGTCGGTGGCT 61.991 66.667 0.00 0.00 0.00 4.75
2393 2537 3.986006 TCGTGGTGAGTCGGTGGC 61.986 66.667 0.00 0.00 0.00 5.01
2394 2538 2.049433 GTCGTGGTGAGTCGGTGG 60.049 66.667 0.00 0.00 0.00 4.61
2395 2539 2.049433 GGTCGTGGTGAGTCGGTG 60.049 66.667 0.00 0.00 0.00 4.94
2396 2540 3.300765 GGGTCGTGGTGAGTCGGT 61.301 66.667 0.00 0.00 0.00 4.69
2397 2541 2.488087 GAAGGGTCGTGGTGAGTCGG 62.488 65.000 0.00 0.00 0.00 4.79
2398 2542 1.080705 GAAGGGTCGTGGTGAGTCG 60.081 63.158 0.00 0.00 0.00 4.18
2399 2543 1.186267 AGGAAGGGTCGTGGTGAGTC 61.186 60.000 0.00 0.00 0.00 3.36
2400 2544 1.152312 AGGAAGGGTCGTGGTGAGT 60.152 57.895 0.00 0.00 0.00 3.41
2401 2545 1.185618 TGAGGAAGGGTCGTGGTGAG 61.186 60.000 0.00 0.00 0.00 3.51
2402 2546 0.761323 TTGAGGAAGGGTCGTGGTGA 60.761 55.000 0.00 0.00 0.00 4.02
2403 2547 0.107831 TTTGAGGAAGGGTCGTGGTG 59.892 55.000 0.00 0.00 0.00 4.17
2404 2548 0.841289 TTTTGAGGAAGGGTCGTGGT 59.159 50.000 0.00 0.00 0.00 4.16
2405 2549 1.975660 TTTTTGAGGAAGGGTCGTGG 58.024 50.000 0.00 0.00 0.00 4.94
2424 2568 6.293004 TGGTCATGGTGAGTTTTTCTTTTT 57.707 33.333 0.00 0.00 0.00 1.94
2425 2569 5.930837 TGGTCATGGTGAGTTTTTCTTTT 57.069 34.783 0.00 0.00 0.00 2.27
2426 2570 5.930837 TTGGTCATGGTGAGTTTTTCTTT 57.069 34.783 0.00 0.00 0.00 2.52
2427 2571 5.930837 TTTGGTCATGGTGAGTTTTTCTT 57.069 34.783 0.00 0.00 0.00 2.52
2428 2572 5.682212 GCTTTTGGTCATGGTGAGTTTTTCT 60.682 40.000 0.00 0.00 0.00 2.52
2429 2573 4.507756 GCTTTTGGTCATGGTGAGTTTTTC 59.492 41.667 0.00 0.00 0.00 2.29
2430 2574 4.081198 TGCTTTTGGTCATGGTGAGTTTTT 60.081 37.500 0.00 0.00 0.00 1.94
2431 2575 3.450457 TGCTTTTGGTCATGGTGAGTTTT 59.550 39.130 0.00 0.00 0.00 2.43
2432 2576 3.030291 TGCTTTTGGTCATGGTGAGTTT 58.970 40.909 0.00 0.00 0.00 2.66
2433 2577 2.624838 CTGCTTTTGGTCATGGTGAGTT 59.375 45.455 0.00 0.00 0.00 3.01
2434 2578 2.158623 TCTGCTTTTGGTCATGGTGAGT 60.159 45.455 0.00 0.00 0.00 3.41
2435 2579 2.507484 TCTGCTTTTGGTCATGGTGAG 58.493 47.619 0.00 0.00 0.00 3.51
2436 2580 2.655090 TCTGCTTTTGGTCATGGTGA 57.345 45.000 0.00 0.00 0.00 4.02
2437 2581 3.947910 AATCTGCTTTTGGTCATGGTG 57.052 42.857 0.00 0.00 0.00 4.17
2438 2582 4.832266 TGTAAATCTGCTTTTGGTCATGGT 59.168 37.500 0.00 0.00 0.00 3.55
2439 2583 5.389859 TGTAAATCTGCTTTTGGTCATGG 57.610 39.130 0.00 0.00 0.00 3.66
2440 2584 4.860907 GCTGTAAATCTGCTTTTGGTCATG 59.139 41.667 0.00 0.00 37.88 3.07
2441 2585 4.523943 TGCTGTAAATCTGCTTTTGGTCAT 59.476 37.500 0.00 0.00 40.79 3.06
2442 2586 3.888323 TGCTGTAAATCTGCTTTTGGTCA 59.112 39.130 0.00 0.00 40.79 4.02
2443 2587 4.229876 GTGCTGTAAATCTGCTTTTGGTC 58.770 43.478 0.00 0.00 40.79 4.02
2444 2588 3.005791 GGTGCTGTAAATCTGCTTTTGGT 59.994 43.478 0.00 0.00 40.79 3.67
2445 2589 3.256631 AGGTGCTGTAAATCTGCTTTTGG 59.743 43.478 0.00 0.00 40.79 3.28
2446 2590 4.510038 AGGTGCTGTAAATCTGCTTTTG 57.490 40.909 0.00 0.00 40.79 2.44
2447 2591 4.829492 AGAAGGTGCTGTAAATCTGCTTTT 59.171 37.500 0.00 0.00 40.79 2.27
2448 2592 4.401925 AGAAGGTGCTGTAAATCTGCTTT 58.598 39.130 0.00 0.00 40.79 3.51
2449 2593 4.026356 AGAAGGTGCTGTAAATCTGCTT 57.974 40.909 0.00 0.00 40.79 3.91
2450 2594 3.710209 AGAAGGTGCTGTAAATCTGCT 57.290 42.857 0.00 0.00 40.79 4.24
2451 2595 4.006319 AGAAGAAGGTGCTGTAAATCTGC 58.994 43.478 0.00 0.00 40.62 4.26
2452 2596 6.566197 AAAGAAGAAGGTGCTGTAAATCTG 57.434 37.500 0.00 0.00 0.00 2.90
2453 2597 6.207614 GGAAAAGAAGAAGGTGCTGTAAATCT 59.792 38.462 0.00 0.00 0.00 2.40
2454 2598 6.382608 GGAAAAGAAGAAGGTGCTGTAAATC 58.617 40.000 0.00 0.00 0.00 2.17
2455 2599 5.243954 GGGAAAAGAAGAAGGTGCTGTAAAT 59.756 40.000 0.00 0.00 0.00 1.40
2456 2600 4.583073 GGGAAAAGAAGAAGGTGCTGTAAA 59.417 41.667 0.00 0.00 0.00 2.01
2457 2601 4.141251 AGGGAAAAGAAGAAGGTGCTGTAA 60.141 41.667 0.00 0.00 0.00 2.41
2458 2602 3.394606 AGGGAAAAGAAGAAGGTGCTGTA 59.605 43.478 0.00 0.00 0.00 2.74
2459 2603 2.175715 AGGGAAAAGAAGAAGGTGCTGT 59.824 45.455 0.00 0.00 0.00 4.40
2460 2604 2.868899 AGGGAAAAGAAGAAGGTGCTG 58.131 47.619 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.