Multiple sequence alignment - TraesCS1D01G299500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G299500 chr1D 100.000 3314 0 0 1 3314 397629209 397632522 0.000000e+00 6120.0
1 TraesCS1D01G299500 chr1B 91.860 2924 162 27 1 2878 533087633 533090526 0.000000e+00 4012.0
2 TraesCS1D01G299500 chr1B 93.631 157 8 2 2923 3078 533090524 533090679 1.990000e-57 233.0
3 TraesCS1D01G299500 chr1A 92.519 1925 80 23 705 2596 495129169 495131062 0.000000e+00 2699.0
4 TraesCS1D01G299500 chr1A 91.429 560 42 4 1 557 495128160 495128716 0.000000e+00 763.0
5 TraesCS1D01G299500 chr1A 88.554 166 16 2 2920 3082 495131127 495131292 7.250000e-47 198.0
6 TraesCS1D01G299500 chr1A 100.000 33 0 0 2657 2689 495131073 495131105 9.930000e-06 62.1
7 TraesCS1D01G299500 chr5D 94.836 213 8 3 1038 1249 386867622 386867412 2.470000e-86 329.0
8 TraesCS1D01G299500 chr5D 89.370 254 13 5 1283 1524 386867408 386867157 1.160000e-79 307.0
9 TraesCS1D01G299500 chr5B 97.692 130 2 1 1063 1191 464896090 464895961 4.300000e-54 222.0
10 TraesCS1D01G299500 chr5B 89.623 106 10 1 1275 1379 60909950 60910055 2.070000e-27 134.0
11 TraesCS1D01G299500 chr2B 85.981 214 18 2 1323 1524 49516076 49515863 5.570000e-53 219.0
12 TraesCS1D01G299500 chr3A 82.500 200 30 5 1956 2153 594590693 594590497 1.580000e-38 171.0
13 TraesCS1D01G299500 chr3A 93.519 108 7 0 1275 1382 503028580 503028687 9.520000e-36 161.0
14 TraesCS1D01G299500 chr3D 81.500 200 32 5 1956 2153 452240248 452240052 3.420000e-35 159.0
15 TraesCS1D01G299500 chr3B 81.481 189 32 3 1956 2143 593921604 593921418 5.730000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G299500 chr1D 397629209 397632522 3313 False 6120.000 6120 100.0000 1 3314 1 chr1D.!!$F1 3313
1 TraesCS1D01G299500 chr1B 533087633 533090679 3046 False 2122.500 4012 92.7455 1 3078 2 chr1B.!!$F1 3077
2 TraesCS1D01G299500 chr1A 495128160 495131292 3132 False 930.525 2699 93.1255 1 3082 4 chr1A.!!$F1 3081

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 1223 0.237498 GCCGCTATTTAACCATCGCC 59.763 55.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2622 3008 0.107654 AATAGTGACGGGCTTCCAGC 60.108 55.0 0.0 0.0 41.46 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 6.490381 CCATCCATCATCTCATTTCTCATTGT 59.510 38.462 0.00 0.00 0.00 2.71
73 74 6.937436 TCCATCATCTCATTTCTCATTGTG 57.063 37.500 0.00 0.00 0.00 3.33
94 95 6.361433 TGTGTCTTTCCATTTCTTTCTACCA 58.639 36.000 0.00 0.00 0.00 3.25
129 130 1.956170 CCGGAGTCTGTGTGTGTGC 60.956 63.158 0.00 0.00 0.00 4.57
130 131 1.227234 CGGAGTCTGTGTGTGTGCA 60.227 57.895 0.00 0.00 0.00 4.57
131 132 1.490693 CGGAGTCTGTGTGTGTGCAC 61.491 60.000 10.75 10.75 45.44 4.57
161 162 1.564348 AGTGTCCTCACAACCCACTTT 59.436 47.619 1.36 0.00 46.01 2.66
166 167 2.021457 CCTCACAACCCACTTTCGTTT 58.979 47.619 0.00 0.00 0.00 3.60
179 180 5.173131 CCACTTTCGTTTGTTGTTAGATTGC 59.827 40.000 0.00 0.00 0.00 3.56
184 185 3.004315 CGTTTGTTGTTAGATTGCCTGGT 59.996 43.478 0.00 0.00 0.00 4.00
186 187 5.278071 CGTTTGTTGTTAGATTGCCTGGTTA 60.278 40.000 0.00 0.00 0.00 2.85
211 212 1.671054 CCCGTCGAGTTGCCAATGT 60.671 57.895 0.00 0.00 0.00 2.71
231 232 1.346395 TCACCATTGTTCACTACCGCT 59.654 47.619 0.00 0.00 0.00 5.52
312 313 4.587584 TGCAAGTTGAATGCTTGATTGA 57.412 36.364 7.16 0.00 44.29 2.57
317 318 6.849305 GCAAGTTGAATGCTTGATTGAAAAAG 59.151 34.615 7.16 0.00 44.29 2.27
320 321 8.721019 AGTTGAATGCTTGATTGAAAAAGAAA 57.279 26.923 0.00 0.00 0.00 2.52
349 352 3.442100 CTTTCGCCGGTACTTAGGTTAG 58.558 50.000 1.90 0.00 0.00 2.34
364 367 7.574607 ACTTAGGTTAGATTTTGGGATACAGG 58.425 38.462 0.00 0.00 39.74 4.00
370 373 5.779241 AGATTTTGGGATACAGGAAGTCA 57.221 39.130 0.00 0.00 39.74 3.41
411 414 4.623932 TCAACTGATTTAGTCTGGCTGT 57.376 40.909 0.00 0.00 39.18 4.40
456 459 2.235155 TCAATAACTTGGCGAGGTGCTA 59.765 45.455 1.45 0.00 45.43 3.49
473 476 1.065345 GCTAACAAAGGAGGGAGGTCC 60.065 57.143 0.00 0.00 36.79 4.46
489 492 2.714250 AGGTCCACTTGGTACCATTTGA 59.286 45.455 17.17 7.59 37.65 2.69
490 493 3.333680 AGGTCCACTTGGTACCATTTGAT 59.666 43.478 17.17 0.00 37.65 2.57
539 542 3.777522 GGGAATGAAGAAGAGGAGAAGGA 59.222 47.826 0.00 0.00 0.00 3.36
549 552 2.045047 AGAGGAGAAGGACCAATGAGGA 59.955 50.000 0.00 0.00 41.22 3.71
552 567 2.472029 GAGAAGGACCAATGAGGAGGA 58.528 52.381 0.00 0.00 41.22 3.71
557 572 1.988982 GACCAATGAGGAGGAGGGGC 61.989 65.000 0.00 0.00 41.22 5.80
558 573 1.695597 CCAATGAGGAGGAGGGGCT 60.696 63.158 0.00 0.00 41.22 5.19
559 574 0.400525 CCAATGAGGAGGAGGGGCTA 60.401 60.000 0.00 0.00 41.22 3.93
562 577 0.486879 ATGAGGAGGAGGGGCTAGAG 59.513 60.000 0.00 0.00 0.00 2.43
563 578 0.627768 TGAGGAGGAGGGGCTAGAGA 60.628 60.000 0.00 0.00 0.00 3.10
565 580 1.155155 GGAGGAGGGGCTAGAGAGG 59.845 68.421 0.00 0.00 0.00 3.69
567 582 2.202899 GGAGGGGCTAGAGAGGGG 59.797 72.222 0.00 0.00 0.00 4.79
568 583 2.202899 GAGGGGCTAGAGAGGGGG 59.797 72.222 0.00 0.00 0.00 5.40
569 584 2.288847 AGGGGCTAGAGAGGGGGA 60.289 66.667 0.00 0.00 0.00 4.81
570 585 1.947254 AGGGGCTAGAGAGGGGGAA 60.947 63.158 0.00 0.00 0.00 3.97
572 587 1.460497 GGGCTAGAGAGGGGGAAGG 60.460 68.421 0.00 0.00 0.00 3.46
573 588 1.460497 GGCTAGAGAGGGGGAAGGG 60.460 68.421 0.00 0.00 0.00 3.95
574 589 1.460497 GCTAGAGAGGGGGAAGGGG 60.460 68.421 0.00 0.00 0.00 4.79
575 590 2.028659 CTAGAGAGGGGGAAGGGGT 58.971 63.158 0.00 0.00 0.00 4.95
578 593 1.541620 GAGAGGGGGAAGGGGTGTT 60.542 63.158 0.00 0.00 0.00 3.32
579 594 1.852626 AGAGGGGGAAGGGGTGTTG 60.853 63.158 0.00 0.00 0.00 3.33
580 595 3.585525 GAGGGGGAAGGGGTGTTGC 62.586 68.421 0.00 0.00 0.00 4.17
583 598 4.966787 GGGAAGGGGTGTTGCGCA 62.967 66.667 5.66 5.66 0.00 6.09
606 626 1.065701 CATACGTGCGGTAGAAGCTCT 59.934 52.381 0.00 0.00 33.84 4.09
610 630 1.390565 GTGCGGTAGAAGCTCTCCTA 58.609 55.000 0.00 0.00 35.28 2.94
611 631 1.957877 GTGCGGTAGAAGCTCTCCTAT 59.042 52.381 0.00 0.00 35.28 2.57
613 633 3.058085 GTGCGGTAGAAGCTCTCCTATAC 60.058 52.174 0.00 0.00 35.28 1.47
618 638 4.820716 GGTAGAAGCTCTCCTATACACGAA 59.179 45.833 0.00 0.00 0.00 3.85
625 645 7.675962 AGCTCTCCTATACACGAATAGTAAG 57.324 40.000 0.00 0.00 0.00 2.34
641 661 8.550376 CGAATAGTAAGTGTACTACTCTCTTCC 58.450 40.741 0.00 0.00 43.91 3.46
699 720 8.258007 AGTATATAAAGTTGTACTCAAGCTGCA 58.742 33.333 1.02 0.00 33.97 4.41
710 1042 7.919690 TGTACTCAAGCTGCATCAATTAATAC 58.080 34.615 1.02 0.00 0.00 1.89
772 1104 4.935495 AGTGTGGCGCCAGGTGTG 62.935 66.667 33.73 0.00 0.00 3.82
848 1182 2.048222 ATGTCACACGCTCCACCG 60.048 61.111 0.00 0.00 0.00 4.94
889 1223 0.237498 GCCGCTATTTAACCATCGCC 59.763 55.000 0.00 0.00 0.00 5.54
944 1278 5.616866 CGGTCGTGCTCAACTATTTTTCATT 60.617 40.000 0.00 0.00 0.00 2.57
1169 1503 3.518998 CATCGGTCCTCGTCGGCT 61.519 66.667 0.00 0.00 40.32 5.52
1281 1657 1.653151 GGAGGTAAGCAACGACATCC 58.347 55.000 0.00 0.00 39.15 3.51
1353 1729 1.474143 GGGCGTCGTACTACTACTCCT 60.474 57.143 0.00 0.00 0.00 3.69
1367 1743 1.014804 ACTCCTCCAGAGACAGGGAT 58.985 55.000 0.00 0.00 46.50 3.85
1415 1791 4.284550 AGGGCCAAGGAAGCGCAA 62.285 61.111 11.47 0.00 44.98 4.85
1477 1853 0.320771 GCGCCTGAAGAAAGAGGACA 60.321 55.000 0.00 0.00 0.00 4.02
1559 1935 1.079819 CATCAAGAGTGACGGCGGT 60.080 57.895 13.24 0.00 36.31 5.68
1610 1986 4.072088 GACGAAGGCCGCAACGTG 62.072 66.667 19.81 1.31 43.32 4.49
1798 2177 3.184683 CTCCGACAAGAGCAGCGC 61.185 66.667 0.00 0.00 0.00 5.92
2222 2605 2.487805 GCAGCAATGGTGGATCCTATCA 60.488 50.000 14.23 8.87 37.07 2.15
2513 2899 4.685169 ACTTGTTGTGAACTGTGAACTG 57.315 40.909 0.00 0.00 0.00 3.16
2514 2900 4.072131 ACTTGTTGTGAACTGTGAACTGT 58.928 39.130 0.00 0.00 0.00 3.55
2515 2901 5.242434 ACTTGTTGTGAACTGTGAACTGTA 58.758 37.500 0.00 0.00 0.00 2.74
2516 2902 5.880332 ACTTGTTGTGAACTGTGAACTGTAT 59.120 36.000 0.00 0.00 0.00 2.29
2563 2949 1.293498 GACCGTCACTGGTGATGCT 59.707 57.895 15.21 4.32 44.01 3.79
2622 3008 3.246226 ACGCTGTACTATAGTAACCGTCG 59.754 47.826 14.20 14.28 30.51 5.12
2643 3029 3.099267 CTGGAAGCCCGTCACTATTAG 57.901 52.381 0.00 0.00 34.29 1.73
2644 3030 2.431057 CTGGAAGCCCGTCACTATTAGT 59.569 50.000 0.00 0.00 34.29 2.24
2645 3031 3.634504 TGGAAGCCCGTCACTATTAGTA 58.365 45.455 0.00 0.00 34.29 1.82
2646 3032 4.025360 TGGAAGCCCGTCACTATTAGTAA 58.975 43.478 0.00 0.00 34.29 2.24
2655 3041 7.009907 GCCCGTCACTATTAGTAAAGTAAGTTG 59.990 40.741 0.00 0.00 0.00 3.16
2706 3096 7.061905 CAGCATGCAGAAAACTAATTCAAGAAG 59.938 37.037 21.98 0.00 0.00 2.85
2707 3097 7.040201 AGCATGCAGAAAACTAATTCAAGAAGA 60.040 33.333 21.98 0.00 0.00 2.87
2708 3098 7.596248 GCATGCAGAAAACTAATTCAAGAAGAA 59.404 33.333 14.21 0.00 41.28 2.52
2709 3099 9.125906 CATGCAGAAAACTAATTCAAGAAGAAG 57.874 33.333 0.00 0.00 40.15 2.85
2727 3117 8.694581 AGAAGAAGTTACTGTGTCTAGTAAGT 57.305 34.615 0.00 0.00 44.56 2.24
2745 3135 1.067776 AGTTGAAGTGGTCCGATCGAC 60.068 52.381 18.66 12.55 41.15 4.20
2759 3149 2.357952 CGATCGACCAGGATGTTGTAGA 59.642 50.000 10.26 0.00 0.00 2.59
2761 3151 2.521126 TCGACCAGGATGTTGTAGACA 58.479 47.619 0.00 0.00 43.71 3.41
2786 3176 5.057819 TCAGATGTAGGTGATCGTAGAGAC 58.942 45.833 0.00 0.00 43.63 3.36
2788 3178 5.049749 CAGATGTAGGTGATCGTAGAGACAG 60.050 48.000 0.00 0.00 43.63 3.51
2808 3198 2.427453 AGAGTGCGACATACGGATTTCT 59.573 45.455 0.00 0.00 45.03 2.52
2815 3205 5.163632 TGCGACATACGGATTTCTTGTAGTA 60.164 40.000 0.00 0.00 42.83 1.82
2876 3266 3.683365 TGCAGTAGCTGTTCATGAAGA 57.317 42.857 8.80 6.77 42.74 2.87
2877 3267 3.593096 TGCAGTAGCTGTTCATGAAGAG 58.407 45.455 24.49 24.49 42.74 2.85
2878 3268 3.007290 TGCAGTAGCTGTTCATGAAGAGT 59.993 43.478 27.70 18.69 42.74 3.24
2879 3269 3.999663 GCAGTAGCTGTTCATGAAGAGTT 59.000 43.478 27.70 25.06 37.91 3.01
2880 3270 4.092675 GCAGTAGCTGTTCATGAAGAGTTC 59.907 45.833 27.70 19.20 37.91 3.01
2881 3271 5.233225 CAGTAGCTGTTCATGAAGAGTTCA 58.767 41.667 27.70 13.43 45.01 3.18
2882 3272 5.348179 CAGTAGCTGTTCATGAAGAGTTCAG 59.652 44.000 27.70 21.33 43.98 3.02
2883 3273 3.072944 AGCTGTTCATGAAGAGTTCAGC 58.927 45.455 27.83 27.83 43.98 4.26
2884 3274 2.810274 GCTGTTCATGAAGAGTTCAGCA 59.190 45.455 29.10 14.11 43.98 4.41
2885 3275 3.120269 GCTGTTCATGAAGAGTTCAGCAG 60.120 47.826 29.10 21.12 43.98 4.24
2886 3276 3.405831 TGTTCATGAAGAGTTCAGCAGG 58.594 45.455 8.80 0.00 43.98 4.85
2887 3277 3.071457 TGTTCATGAAGAGTTCAGCAGGA 59.929 43.478 8.80 0.00 43.98 3.86
2888 3278 3.325293 TCATGAAGAGTTCAGCAGGAC 57.675 47.619 0.00 0.00 43.98 3.85
2889 3279 2.027745 TCATGAAGAGTTCAGCAGGACC 60.028 50.000 0.00 0.00 43.98 4.46
2890 3280 1.722034 TGAAGAGTTCAGCAGGACCT 58.278 50.000 0.00 0.00 34.08 3.85
2891 3281 2.050144 TGAAGAGTTCAGCAGGACCTT 58.950 47.619 0.00 0.00 34.08 3.50
2892 3282 2.439507 TGAAGAGTTCAGCAGGACCTTT 59.560 45.455 0.00 0.00 34.08 3.11
2893 3283 2.557920 AGAGTTCAGCAGGACCTTTG 57.442 50.000 0.00 0.00 0.00 2.77
2894 3284 0.877743 GAGTTCAGCAGGACCTTTGC 59.122 55.000 0.00 0.00 41.83 3.68
2895 3285 0.886490 AGTTCAGCAGGACCTTTGCG 60.886 55.000 0.00 0.00 45.98 4.85
2896 3286 1.600636 TTCAGCAGGACCTTTGCGG 60.601 57.895 0.00 0.00 45.98 5.69
2910 3300 6.088016 ACCTTTGCGGTATAATCGTATACA 57.912 37.500 3.32 0.00 46.73 2.29
2911 3301 6.694447 ACCTTTGCGGTATAATCGTATACAT 58.306 36.000 3.32 0.00 46.73 2.29
2912 3302 7.829725 ACCTTTGCGGTATAATCGTATACATA 58.170 34.615 3.32 0.00 46.73 2.29
2913 3303 8.306038 ACCTTTGCGGTATAATCGTATACATAA 58.694 33.333 3.32 0.00 46.73 1.90
2914 3304 9.142515 CCTTTGCGGTATAATCGTATACATAAA 57.857 33.333 3.32 4.05 42.71 1.40
2947 3337 4.619863 GCCTCCATTTCTACTGTTGTACGA 60.620 45.833 0.00 0.00 0.00 3.43
2950 3340 6.405953 CCTCCATTTCTACTGTTGTACGAGAT 60.406 42.308 0.00 0.00 0.00 2.75
3011 3402 4.687215 GCTGGGCGACTGCAGTCA 62.687 66.667 38.31 23.10 44.99 3.41
3064 3458 2.082231 CACAGAGCAGGATCTTGTTGG 58.918 52.381 6.70 0.00 0.00 3.77
3069 3463 1.280421 AGCAGGATCTTGTTGGTCCTC 59.720 52.381 6.70 0.00 40.31 3.71
3082 3476 0.179018 GGTCCTCACCAACTGTTGCT 60.179 55.000 14.94 0.00 43.17 3.91
3083 3477 1.071699 GGTCCTCACCAACTGTTGCTA 59.928 52.381 14.94 1.81 43.17 3.49
3084 3478 2.143925 GTCCTCACCAACTGTTGCTAC 58.856 52.381 14.94 2.96 0.00 3.58
3085 3479 1.765904 TCCTCACCAACTGTTGCTACA 59.234 47.619 14.94 0.03 0.00 2.74
3086 3480 2.171659 TCCTCACCAACTGTTGCTACAA 59.828 45.455 14.94 0.00 32.92 2.41
3087 3481 2.290641 CCTCACCAACTGTTGCTACAAC 59.709 50.000 14.94 3.52 32.92 3.32
3088 3482 3.206150 CTCACCAACTGTTGCTACAACT 58.794 45.455 14.94 0.00 32.92 3.16
3089 3483 2.942376 TCACCAACTGTTGCTACAACTG 59.058 45.455 14.94 13.65 32.92 3.16
3090 3484 2.033299 CACCAACTGTTGCTACAACTGG 59.967 50.000 19.89 19.89 39.94 4.00
3091 3485 1.001378 CCAACTGTTGCTACAACTGGC 60.001 52.381 14.94 0.00 32.41 4.85
3092 3486 1.949525 CAACTGTTGCTACAACTGGCT 59.050 47.619 17.81 5.68 32.92 4.75
3093 3487 3.138304 CAACTGTTGCTACAACTGGCTA 58.862 45.455 17.81 0.00 32.92 3.93
3094 3488 3.045601 ACTGTTGCTACAACTGGCTAG 57.954 47.619 17.81 0.00 32.92 3.42
3095 3489 1.734465 CTGTTGCTACAACTGGCTAGC 59.266 52.381 6.04 6.04 36.65 3.42
3096 3490 1.071542 TGTTGCTACAACTGGCTAGCA 59.928 47.619 18.24 0.00 42.88 3.49
3098 3492 1.808411 TGCTACAACTGGCTAGCAAC 58.192 50.000 18.24 0.00 41.89 4.17
3099 3493 1.347707 TGCTACAACTGGCTAGCAACT 59.652 47.619 18.24 0.00 41.89 3.16
3100 3494 2.565391 TGCTACAACTGGCTAGCAACTA 59.435 45.455 18.24 0.00 41.89 2.24
3101 3495 3.190874 GCTACAACTGGCTAGCAACTAG 58.809 50.000 18.24 11.07 36.22 2.57
3119 3513 4.857509 CTAGCCTTGTGGTAGGAGATAC 57.142 50.000 0.00 0.00 40.62 2.24
3120 3514 3.406512 AGCCTTGTGGTAGGAGATACT 57.593 47.619 0.00 0.00 37.50 2.12
3121 3515 4.537945 AGCCTTGTGGTAGGAGATACTA 57.462 45.455 0.00 0.00 37.50 1.82
3122 3516 4.475345 AGCCTTGTGGTAGGAGATACTAG 58.525 47.826 0.00 0.00 37.50 2.57
3123 3517 3.006003 GCCTTGTGGTAGGAGATACTAGC 59.994 52.174 0.00 0.00 40.81 3.42
3124 3518 4.215908 CCTTGTGGTAGGAGATACTAGCA 58.784 47.826 0.00 0.00 45.94 3.49
3128 3522 3.910989 TGGTAGGAGATACTAGCAAGCA 58.089 45.455 1.46 0.00 45.37 3.91
3129 3523 4.483950 TGGTAGGAGATACTAGCAAGCAT 58.516 43.478 1.46 0.00 45.37 3.79
3130 3524 4.281941 TGGTAGGAGATACTAGCAAGCATG 59.718 45.833 1.46 0.00 45.37 4.06
3131 3525 4.322349 GGTAGGAGATACTAGCAAGCATGG 60.322 50.000 0.00 0.00 40.29 3.66
3132 3526 2.038295 AGGAGATACTAGCAAGCATGGC 59.962 50.000 0.00 0.00 32.57 4.40
3133 3527 2.224378 GGAGATACTAGCAAGCATGGCA 60.224 50.000 0.00 0.00 37.68 4.92
3134 3528 3.470709 GAGATACTAGCAAGCATGGCAA 58.529 45.455 0.00 0.00 37.68 4.52
3135 3529 3.474600 AGATACTAGCAAGCATGGCAAG 58.525 45.455 0.00 0.00 37.68 4.01
3136 3530 2.042686 TACTAGCAAGCATGGCAAGG 57.957 50.000 0.00 0.00 37.68 3.61
3137 3531 0.682209 ACTAGCAAGCATGGCAAGGG 60.682 55.000 0.00 0.00 37.68 3.95
3138 3532 0.682209 CTAGCAAGCATGGCAAGGGT 60.682 55.000 0.00 0.00 37.68 4.34
3139 3533 0.251742 TAGCAAGCATGGCAAGGGTT 60.252 50.000 0.00 0.00 37.68 4.11
3140 3534 0.251742 AGCAAGCATGGCAAGGGTTA 60.252 50.000 6.64 0.00 37.68 2.85
3141 3535 0.826062 GCAAGCATGGCAAGGGTTAT 59.174 50.000 6.64 0.00 32.79 1.89
3142 3536 1.202452 GCAAGCATGGCAAGGGTTATC 60.202 52.381 6.64 0.30 32.79 1.75
3143 3537 2.381911 CAAGCATGGCAAGGGTTATCT 58.618 47.619 6.64 0.00 0.00 1.98
3144 3538 2.762327 CAAGCATGGCAAGGGTTATCTT 59.238 45.455 6.64 0.00 0.00 2.40
3145 3539 2.659428 AGCATGGCAAGGGTTATCTTC 58.341 47.619 0.00 0.00 0.00 2.87
3146 3540 2.243221 AGCATGGCAAGGGTTATCTTCT 59.757 45.455 0.00 0.00 0.00 2.85
3147 3541 2.620585 GCATGGCAAGGGTTATCTTCTC 59.379 50.000 0.00 0.00 0.00 2.87
3148 3542 3.686691 GCATGGCAAGGGTTATCTTCTCT 60.687 47.826 0.00 0.00 0.00 3.10
3149 3543 3.634397 TGGCAAGGGTTATCTTCTCTG 57.366 47.619 0.00 0.00 0.00 3.35
3150 3544 2.912956 TGGCAAGGGTTATCTTCTCTGT 59.087 45.455 0.00 0.00 0.00 3.41
3151 3545 4.101114 TGGCAAGGGTTATCTTCTCTGTA 58.899 43.478 0.00 0.00 0.00 2.74
3152 3546 4.081087 TGGCAAGGGTTATCTTCTCTGTAC 60.081 45.833 0.00 0.00 0.00 2.90
3153 3547 4.162509 GGCAAGGGTTATCTTCTCTGTACT 59.837 45.833 0.00 0.00 0.00 2.73
3154 3548 5.353111 GCAAGGGTTATCTTCTCTGTACTC 58.647 45.833 0.00 0.00 0.00 2.59
3155 3549 5.128008 GCAAGGGTTATCTTCTCTGTACTCT 59.872 44.000 0.00 0.00 0.00 3.24
3156 3550 6.568869 CAAGGGTTATCTTCTCTGTACTCTG 58.431 44.000 0.00 0.00 0.00 3.35
3157 3551 5.833340 AGGGTTATCTTCTCTGTACTCTGT 58.167 41.667 0.00 0.00 0.00 3.41
3158 3552 6.971340 AGGGTTATCTTCTCTGTACTCTGTA 58.029 40.000 0.00 0.00 0.00 2.74
3159 3553 7.057894 AGGGTTATCTTCTCTGTACTCTGTAG 58.942 42.308 0.00 0.00 0.00 2.74
3160 3554 6.238814 GGGTTATCTTCTCTGTACTCTGTAGC 60.239 46.154 0.00 0.00 0.00 3.58
3161 3555 6.319152 GGTTATCTTCTCTGTACTCTGTAGCA 59.681 42.308 0.00 0.00 0.00 3.49
3162 3556 7.148052 GGTTATCTTCTCTGTACTCTGTAGCAA 60.148 40.741 0.00 0.00 0.00 3.91
3163 3557 5.888691 TCTTCTCTGTACTCTGTAGCAAG 57.111 43.478 0.00 0.00 0.00 4.01
3164 3558 5.561679 TCTTCTCTGTACTCTGTAGCAAGA 58.438 41.667 0.00 0.00 0.00 3.02
3166 3560 5.167303 TCTCTGTACTCTGTAGCAAGAGA 57.833 43.478 15.56 0.00 45.59 3.10
3167 3561 5.561679 TCTCTGTACTCTGTAGCAAGAGAA 58.438 41.667 15.56 3.25 45.59 2.87
3168 3562 5.413213 TCTCTGTACTCTGTAGCAAGAGAAC 59.587 44.000 15.56 0.00 45.59 3.01
3169 3563 4.459685 TCTGTACTCTGTAGCAAGAGAACC 59.540 45.833 15.56 5.68 45.59 3.62
3170 3564 3.190744 TGTACTCTGTAGCAAGAGAACCG 59.809 47.826 15.56 0.00 45.59 4.44
3171 3565 2.515854 ACTCTGTAGCAAGAGAACCGA 58.484 47.619 15.56 0.00 45.59 4.69
3172 3566 2.490115 ACTCTGTAGCAAGAGAACCGAG 59.510 50.000 15.56 4.42 45.59 4.63
3173 3567 1.202582 TCTGTAGCAAGAGAACCGAGC 59.797 52.381 0.00 0.00 0.00 5.03
3174 3568 0.966179 TGTAGCAAGAGAACCGAGCA 59.034 50.000 0.00 0.00 0.00 4.26
3175 3569 1.343142 TGTAGCAAGAGAACCGAGCAA 59.657 47.619 0.00 0.00 0.00 3.91
3176 3570 2.028112 TGTAGCAAGAGAACCGAGCAAT 60.028 45.455 0.00 0.00 0.00 3.56
3177 3571 1.731720 AGCAAGAGAACCGAGCAATC 58.268 50.000 0.00 0.00 0.00 2.67
3178 3572 0.729690 GCAAGAGAACCGAGCAATCC 59.270 55.000 0.00 0.00 0.00 3.01
3179 3573 1.677217 GCAAGAGAACCGAGCAATCCT 60.677 52.381 0.00 0.00 0.00 3.24
3180 3574 2.005451 CAAGAGAACCGAGCAATCCTG 58.995 52.381 0.00 0.00 0.00 3.86
3181 3575 1.561643 AGAGAACCGAGCAATCCTGA 58.438 50.000 0.00 0.00 0.00 3.86
3182 3576 2.114616 AGAGAACCGAGCAATCCTGAT 58.885 47.619 0.00 0.00 0.00 2.90
3183 3577 2.503356 AGAGAACCGAGCAATCCTGATT 59.497 45.455 0.00 0.00 0.00 2.57
3184 3578 2.869192 GAGAACCGAGCAATCCTGATTC 59.131 50.000 0.00 0.00 0.00 2.52
3185 3579 2.237143 AGAACCGAGCAATCCTGATTCA 59.763 45.455 0.00 0.00 0.00 2.57
3186 3580 3.118112 AGAACCGAGCAATCCTGATTCAT 60.118 43.478 0.00 0.00 0.00 2.57
3187 3581 4.101585 AGAACCGAGCAATCCTGATTCATA 59.898 41.667 0.00 0.00 0.00 2.15
3188 3582 4.630644 ACCGAGCAATCCTGATTCATAT 57.369 40.909 0.00 0.00 0.00 1.78
3189 3583 4.321718 ACCGAGCAATCCTGATTCATATG 58.678 43.478 0.00 0.00 0.00 1.78
3190 3584 3.126514 CCGAGCAATCCTGATTCATATGC 59.873 47.826 0.00 0.00 0.00 3.14
3191 3585 3.181523 CGAGCAATCCTGATTCATATGCG 60.182 47.826 0.00 0.00 0.00 4.73
3192 3586 3.748083 AGCAATCCTGATTCATATGCGT 58.252 40.909 0.00 0.00 0.00 5.24
3193 3587 4.139786 AGCAATCCTGATTCATATGCGTT 58.860 39.130 0.00 0.00 0.00 4.84
3194 3588 4.581824 AGCAATCCTGATTCATATGCGTTT 59.418 37.500 0.00 0.00 0.00 3.60
3195 3589 4.913924 GCAATCCTGATTCATATGCGTTTC 59.086 41.667 0.00 0.00 0.00 2.78
3196 3590 5.506151 GCAATCCTGATTCATATGCGTTTCA 60.506 40.000 0.00 0.00 0.00 2.69
3197 3591 6.497437 CAATCCTGATTCATATGCGTTTCAA 58.503 36.000 0.00 0.00 0.00 2.69
3198 3592 6.889301 ATCCTGATTCATATGCGTTTCAAT 57.111 33.333 0.00 0.00 0.00 2.57
3199 3593 6.698008 TCCTGATTCATATGCGTTTCAATT 57.302 33.333 0.00 0.00 0.00 2.32
3200 3594 7.099266 TCCTGATTCATATGCGTTTCAATTT 57.901 32.000 0.00 0.00 0.00 1.82
3201 3595 7.195646 TCCTGATTCATATGCGTTTCAATTTC 58.804 34.615 0.00 0.00 0.00 2.17
3202 3596 6.974048 CCTGATTCATATGCGTTTCAATTTCA 59.026 34.615 0.00 0.00 0.00 2.69
3203 3597 7.488792 CCTGATTCATATGCGTTTCAATTTCAA 59.511 33.333 0.00 0.00 0.00 2.69
3204 3598 8.172159 TGATTCATATGCGTTTCAATTTCAAC 57.828 30.769 0.00 0.00 0.00 3.18
3205 3599 6.942886 TTCATATGCGTTTCAATTTCAACC 57.057 33.333 0.00 0.00 0.00 3.77
3206 3600 5.406649 TCATATGCGTTTCAATTTCAACCC 58.593 37.500 0.00 0.00 0.00 4.11
3207 3601 3.742433 ATGCGTTTCAATTTCAACCCA 57.258 38.095 0.00 0.00 0.00 4.51
3208 3602 2.815478 TGCGTTTCAATTTCAACCCAC 58.185 42.857 0.00 0.00 0.00 4.61
3209 3603 2.166459 TGCGTTTCAATTTCAACCCACA 59.834 40.909 0.00 0.00 0.00 4.17
3210 3604 2.538037 GCGTTTCAATTTCAACCCACAC 59.462 45.455 0.00 0.00 0.00 3.82
3211 3605 3.775202 CGTTTCAATTTCAACCCACACA 58.225 40.909 0.00 0.00 0.00 3.72
3212 3606 4.177026 CGTTTCAATTTCAACCCACACAA 58.823 39.130 0.00 0.00 0.00 3.33
3213 3607 4.267452 CGTTTCAATTTCAACCCACACAAG 59.733 41.667 0.00 0.00 0.00 3.16
3214 3608 4.399004 TTCAATTTCAACCCACACAAGG 57.601 40.909 0.00 0.00 0.00 3.61
3215 3609 3.636679 TCAATTTCAACCCACACAAGGA 58.363 40.909 0.00 0.00 0.00 3.36
3216 3610 3.636300 TCAATTTCAACCCACACAAGGAG 59.364 43.478 0.00 0.00 0.00 3.69
3217 3611 2.065899 TTTCAACCCACACAAGGAGG 57.934 50.000 0.00 0.00 0.00 4.30
3218 3612 1.217916 TTCAACCCACACAAGGAGGA 58.782 50.000 0.00 0.00 0.00 3.71
3219 3613 0.764890 TCAACCCACACAAGGAGGAG 59.235 55.000 0.00 0.00 0.00 3.69
3220 3614 0.890996 CAACCCACACAAGGAGGAGC 60.891 60.000 0.00 0.00 0.00 4.70
3221 3615 2.046892 CCCACACAAGGAGGAGCG 60.047 66.667 0.00 0.00 0.00 5.03
3222 3616 2.743928 CCACACAAGGAGGAGCGC 60.744 66.667 0.00 0.00 0.00 5.92
3223 3617 2.031012 CACACAAGGAGGAGCGCA 59.969 61.111 11.47 0.00 0.00 6.09
3224 3618 2.031516 CACACAAGGAGGAGCGCAG 61.032 63.158 11.47 0.00 0.00 5.18
3225 3619 2.210013 ACACAAGGAGGAGCGCAGA 61.210 57.895 11.47 0.00 0.00 4.26
3226 3620 1.004560 CACAAGGAGGAGCGCAGAA 60.005 57.895 11.47 0.00 0.00 3.02
3227 3621 1.004440 ACAAGGAGGAGCGCAGAAC 60.004 57.895 11.47 0.00 0.00 3.01
3228 3622 1.294780 CAAGGAGGAGCGCAGAACT 59.705 57.895 11.47 0.65 0.00 3.01
3229 3623 1.018226 CAAGGAGGAGCGCAGAACTG 61.018 60.000 11.47 0.00 0.00 3.16
3242 3636 3.473093 CAGAACTGCAGAGCAAATGAG 57.527 47.619 23.35 0.00 38.41 2.90
3243 3637 2.812591 CAGAACTGCAGAGCAAATGAGT 59.187 45.455 23.35 0.00 38.41 3.41
3244 3638 2.812591 AGAACTGCAGAGCAAATGAGTG 59.187 45.455 23.35 0.00 38.41 3.51
3245 3639 1.531423 ACTGCAGAGCAAATGAGTGG 58.469 50.000 23.35 0.00 38.41 4.00
3246 3640 0.170561 CTGCAGAGCAAATGAGTGGC 59.829 55.000 8.42 0.00 38.41 5.01
3247 3641 0.537828 TGCAGAGCAAATGAGTGGCA 60.538 50.000 0.00 0.00 34.76 4.92
3248 3642 0.815734 GCAGAGCAAATGAGTGGCAT 59.184 50.000 0.00 0.00 39.43 4.40
3249 3643 1.202268 GCAGAGCAAATGAGTGGCATC 60.202 52.381 0.00 0.00 35.78 3.91
3250 3644 2.089201 CAGAGCAAATGAGTGGCATCA 58.911 47.619 0.00 0.00 35.78 3.07
3251 3645 2.490509 CAGAGCAAATGAGTGGCATCAA 59.509 45.455 0.00 0.00 35.78 2.57
3252 3646 3.057104 CAGAGCAAATGAGTGGCATCAAA 60.057 43.478 0.00 0.00 35.78 2.69
3253 3647 3.057033 AGAGCAAATGAGTGGCATCAAAC 60.057 43.478 0.00 0.00 35.78 2.93
3254 3648 2.629137 AGCAAATGAGTGGCATCAAACA 59.371 40.909 0.00 0.00 35.78 2.83
3255 3649 3.259876 AGCAAATGAGTGGCATCAAACAT 59.740 39.130 0.00 0.00 35.78 2.71
3256 3650 3.369756 GCAAATGAGTGGCATCAAACATG 59.630 43.478 0.00 0.00 35.78 3.21
3257 3651 4.811908 CAAATGAGTGGCATCAAACATGA 58.188 39.130 0.00 0.00 35.78 3.07
3258 3652 5.416083 CAAATGAGTGGCATCAAACATGAT 58.584 37.500 0.00 0.00 35.78 2.45
3259 3653 4.913335 ATGAGTGGCATCAAACATGATC 57.087 40.909 0.00 0.00 28.85 2.92
3260 3654 2.679336 TGAGTGGCATCAAACATGATCG 59.321 45.455 0.00 0.00 0.00 3.69
3261 3655 1.402968 AGTGGCATCAAACATGATCGC 59.597 47.619 0.00 0.00 0.00 4.58
3262 3656 1.132834 GTGGCATCAAACATGATCGCA 59.867 47.619 0.00 0.00 0.00 5.10
3263 3657 1.402613 TGGCATCAAACATGATCGCAG 59.597 47.619 0.00 0.00 0.00 5.18
3264 3658 1.474017 GCATCAAACATGATCGCAGC 58.526 50.000 0.00 0.00 0.00 5.25
3265 3659 1.738432 CATCAAACATGATCGCAGCG 58.262 50.000 9.06 9.06 0.00 5.18
3266 3660 1.063027 CATCAAACATGATCGCAGCGT 59.937 47.619 15.93 1.62 0.00 5.07
3267 3661 2.003196 TCAAACATGATCGCAGCGTA 57.997 45.000 15.93 1.65 0.00 4.42
3268 3662 1.658596 TCAAACATGATCGCAGCGTAC 59.341 47.619 15.93 10.62 0.00 3.67
3269 3663 1.393196 CAAACATGATCGCAGCGTACA 59.607 47.619 15.93 15.94 0.00 2.90
3270 3664 1.939974 AACATGATCGCAGCGTACAT 58.060 45.000 15.93 17.42 0.00 2.29
3271 3665 2.793278 ACATGATCGCAGCGTACATA 57.207 45.000 21.58 2.79 0.00 2.29
3272 3666 2.394708 ACATGATCGCAGCGTACATAC 58.605 47.619 21.58 8.25 0.00 2.39
3273 3667 2.223711 ACATGATCGCAGCGTACATACA 60.224 45.455 21.58 12.35 0.00 2.29
3274 3668 2.793278 TGATCGCAGCGTACATACAT 57.207 45.000 15.93 0.00 0.00 2.29
3275 3669 3.907894 TGATCGCAGCGTACATACATA 57.092 42.857 15.93 0.00 0.00 2.29
3276 3670 3.561503 TGATCGCAGCGTACATACATAC 58.438 45.455 15.93 0.00 0.00 2.39
3277 3671 3.003897 TGATCGCAGCGTACATACATACA 59.996 43.478 15.93 0.00 0.00 2.29
3278 3672 3.636282 TCGCAGCGTACATACATACAT 57.364 42.857 15.93 0.00 0.00 2.29
3279 3673 4.752661 TCGCAGCGTACATACATACATA 57.247 40.909 15.93 0.00 0.00 2.29
3280 3674 4.469552 TCGCAGCGTACATACATACATAC 58.530 43.478 15.93 0.00 0.00 2.39
3281 3675 4.023878 TCGCAGCGTACATACATACATACA 60.024 41.667 15.93 0.00 0.00 2.29
3282 3676 4.320953 CGCAGCGTACATACATACATACAG 59.679 45.833 6.65 0.00 0.00 2.74
3283 3677 5.458015 GCAGCGTACATACATACATACAGA 58.542 41.667 0.00 0.00 0.00 3.41
3284 3678 6.093404 GCAGCGTACATACATACATACAGAT 58.907 40.000 0.00 0.00 0.00 2.90
3285 3679 7.248437 GCAGCGTACATACATACATACAGATA 58.752 38.462 0.00 0.00 0.00 1.98
3286 3680 7.753580 GCAGCGTACATACATACATACAGATAA 59.246 37.037 0.00 0.00 0.00 1.75
3287 3681 9.788960 CAGCGTACATACATACATACAGATAAT 57.211 33.333 0.00 0.00 0.00 1.28
3288 3682 9.788960 AGCGTACATACATACATACAGATAATG 57.211 33.333 0.00 0.00 0.00 1.90
3289 3683 8.532341 GCGTACATACATACATACAGATAATGC 58.468 37.037 0.00 0.00 0.00 3.56
3290 3684 9.020813 CGTACATACATACATACAGATAATGCC 57.979 37.037 0.00 0.00 0.00 4.40
3291 3685 9.020813 GTACATACATACATACAGATAATGCCG 57.979 37.037 0.00 0.00 0.00 5.69
3292 3686 7.611770 ACATACATACATACAGATAATGCCGT 58.388 34.615 0.00 0.00 0.00 5.68
3293 3687 8.094548 ACATACATACATACAGATAATGCCGTT 58.905 33.333 0.00 0.00 0.00 4.44
3294 3688 6.785488 ACATACATACAGATAATGCCGTTG 57.215 37.500 0.00 0.00 0.00 4.10
3295 3689 5.179368 ACATACATACAGATAATGCCGTTGC 59.821 40.000 0.00 0.00 38.26 4.17
3296 3690 2.878406 ACATACAGATAATGCCGTTGCC 59.122 45.455 0.00 0.00 36.33 4.52
3297 3691 1.961793 TACAGATAATGCCGTTGCCC 58.038 50.000 0.00 0.00 36.33 5.36
3298 3692 0.034574 ACAGATAATGCCGTTGCCCA 60.035 50.000 0.00 0.00 36.33 5.36
3299 3693 1.102154 CAGATAATGCCGTTGCCCAA 58.898 50.000 0.00 0.00 36.33 4.12
3300 3694 1.066002 CAGATAATGCCGTTGCCCAAG 59.934 52.381 0.00 0.00 36.33 3.61
3301 3695 1.102978 GATAATGCCGTTGCCCAAGT 58.897 50.000 0.00 0.00 36.33 3.16
3302 3696 0.817013 ATAATGCCGTTGCCCAAGTG 59.183 50.000 0.00 0.00 36.33 3.16
3303 3697 0.250945 TAATGCCGTTGCCCAAGTGA 60.251 50.000 0.00 0.00 36.33 3.41
3304 3698 1.112315 AATGCCGTTGCCCAAGTGAA 61.112 50.000 0.00 0.00 36.33 3.18
3305 3699 0.899717 ATGCCGTTGCCCAAGTGAAT 60.900 50.000 0.00 0.00 36.33 2.57
3306 3700 1.112315 TGCCGTTGCCCAAGTGAATT 61.112 50.000 0.00 0.00 36.33 2.17
3307 3701 0.885196 GCCGTTGCCCAAGTGAATTA 59.115 50.000 0.00 0.00 0.00 1.40
3308 3702 1.271102 GCCGTTGCCCAAGTGAATTAA 59.729 47.619 0.00 0.00 0.00 1.40
3309 3703 2.924880 GCCGTTGCCCAAGTGAATTAAC 60.925 50.000 0.00 0.00 0.00 2.01
3310 3704 2.352323 CCGTTGCCCAAGTGAATTAACC 60.352 50.000 0.00 0.00 0.00 2.85
3311 3705 2.667171 CGTTGCCCAAGTGAATTAACCG 60.667 50.000 0.00 0.00 0.00 4.44
3312 3706 2.554893 GTTGCCCAAGTGAATTAACCGA 59.445 45.455 0.00 0.00 0.00 4.69
3313 3707 2.432444 TGCCCAAGTGAATTAACCGAG 58.568 47.619 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.120683 TGCGACTTAGTTTCGAGCAAATG 60.121 43.478 0.00 0.00 38.85 2.32
72 73 6.601332 AGTGGTAGAAAGAAATGGAAAGACA 58.399 36.000 0.00 0.00 0.00 3.41
73 74 7.445707 AGAAGTGGTAGAAAGAAATGGAAAGAC 59.554 37.037 0.00 0.00 0.00 3.01
94 95 0.317479 CGGGGAGACGAACAAGAAGT 59.683 55.000 0.00 0.00 35.47 3.01
131 132 2.430244 AGGACACTAACGTGCGCG 60.430 61.111 19.78 19.78 45.10 6.86
135 136 2.132762 GGTTGTGAGGACACTAACGTG 58.867 52.381 0.00 0.00 46.07 4.49
136 137 1.069668 GGGTTGTGAGGACACTAACGT 59.930 52.381 0.00 0.00 46.07 3.99
139 140 2.404559 AGTGGGTTGTGAGGACACTAA 58.595 47.619 0.00 0.00 46.07 2.24
140 141 2.097110 AGTGGGTTGTGAGGACACTA 57.903 50.000 0.00 0.00 46.07 2.74
141 142 1.213296 AAGTGGGTTGTGAGGACACT 58.787 50.000 0.00 0.00 46.07 3.55
161 162 3.252215 CCAGGCAATCTAACAACAAACGA 59.748 43.478 0.00 0.00 0.00 3.85
166 167 4.634004 CGATAACCAGGCAATCTAACAACA 59.366 41.667 0.00 0.00 0.00 3.33
179 180 1.602165 CGACGGGAATCGATAACCAGG 60.602 57.143 19.42 14.12 45.13 4.45
211 212 1.346395 AGCGGTAGTGAACAATGGTGA 59.654 47.619 0.00 0.00 0.00 4.02
349 352 4.640647 GGTGACTTCCTGTATCCCAAAATC 59.359 45.833 0.00 0.00 0.00 2.17
370 373 8.735513 AGTTGAAACTCGCAAACCAAAATGGT 62.736 38.462 0.00 0.00 44.45 3.55
384 387 5.389935 GCCAGACTAAATCAGTTGAAACTCG 60.390 44.000 0.00 0.00 37.72 4.18
411 414 2.029020 CGATAGCGGGAAGATCCATTGA 60.029 50.000 0.00 0.00 38.64 2.57
456 459 0.771755 GTGGACCTCCCTCCTTTGTT 59.228 55.000 0.00 0.00 35.38 2.83
473 476 7.106239 AGACTTCTATCAAATGGTACCAAGTG 58.894 38.462 20.76 19.09 0.00 3.16
489 492 7.471260 GCTCTCCATCATACACAAGACTTCTAT 60.471 40.741 0.00 0.00 0.00 1.98
490 493 6.183360 GCTCTCCATCATACACAAGACTTCTA 60.183 42.308 0.00 0.00 0.00 2.10
539 542 2.003548 GCCCCTCCTCCTCATTGGT 61.004 63.158 0.00 0.00 37.07 3.67
549 552 2.408203 CCCCTCTCTAGCCCCTCCT 61.408 68.421 0.00 0.00 0.00 3.69
552 567 1.947254 TTCCCCCTCTCTAGCCCCT 60.947 63.158 0.00 0.00 0.00 4.79
557 572 0.399233 CACCCCTTCCCCCTCTCTAG 60.399 65.000 0.00 0.00 0.00 2.43
558 573 1.160289 ACACCCCTTCCCCCTCTCTA 61.160 60.000 0.00 0.00 0.00 2.43
559 574 2.062448 AACACCCCTTCCCCCTCTCT 62.062 60.000 0.00 0.00 0.00 3.10
562 577 2.763902 CAACACCCCTTCCCCCTC 59.236 66.667 0.00 0.00 0.00 4.30
563 578 3.590574 GCAACACCCCTTCCCCCT 61.591 66.667 0.00 0.00 0.00 4.79
567 582 3.670377 GTGCGCAACACCCCTTCC 61.670 66.667 14.00 0.00 44.02 3.46
586 601 1.065701 AGAGCTTCTACCGCACGTATG 59.934 52.381 0.00 0.00 0.00 2.39
587 602 1.334243 GAGAGCTTCTACCGCACGTAT 59.666 52.381 0.00 0.00 0.00 3.06
588 603 0.731417 GAGAGCTTCTACCGCACGTA 59.269 55.000 0.00 0.00 0.00 3.57
589 604 1.507174 GAGAGCTTCTACCGCACGT 59.493 57.895 0.00 0.00 0.00 4.49
610 630 9.829507 AGAGTAGTACACTTACTATTCGTGTAT 57.170 33.333 2.52 0.00 45.61 2.29
611 631 9.307121 GAGAGTAGTACACTTACTATTCGTGTA 57.693 37.037 2.52 0.00 45.61 2.90
613 633 8.422973 AGAGAGTAGTACACTTACTATTCGTG 57.577 38.462 2.52 0.00 45.61 4.35
618 638 9.924010 ATTGGAAGAGAGTAGTACACTTACTAT 57.076 33.333 2.52 5.86 41.80 2.12
625 645 7.596995 GCATCATATTGGAAGAGAGTAGTACAC 59.403 40.741 2.52 0.00 0.00 2.90
631 651 5.306419 AGCTGCATCATATTGGAAGAGAGTA 59.694 40.000 1.02 0.00 0.00 2.59
641 661 5.996669 TGTACTGAAGCTGCATCATATTG 57.003 39.130 8.12 0.00 0.00 1.90
772 1104 1.566298 AACATCCCCTGGCTCACTCC 61.566 60.000 0.00 0.00 0.00 3.85
899 1233 3.319198 TGACTTGGAGGGGCCGAC 61.319 66.667 0.00 0.00 40.66 4.79
944 1278 0.104144 TGGACCAGGGAGGAAAGGAA 60.104 55.000 0.00 0.00 41.22 3.36
1169 1503 3.075005 GGCTGCTGGTAGGACCGA 61.075 66.667 0.00 0.00 42.58 4.69
1191 1525 1.213013 CCGACGACTCCCAGTTCAG 59.787 63.158 0.00 0.00 0.00 3.02
1192 1526 2.927580 GCCGACGACTCCCAGTTCA 61.928 63.158 0.00 0.00 0.00 3.18
1194 1528 2.600769 AGCCGACGACTCCCAGTT 60.601 61.111 0.00 0.00 0.00 3.16
1195 1529 3.063084 GAGCCGACGACTCCCAGT 61.063 66.667 0.00 0.00 0.00 4.00
1196 1530 4.180946 CGAGCCGACGACTCCCAG 62.181 72.222 5.55 0.00 35.09 4.45
1257 1591 1.053424 TCGTTGCTTACCTCCCTGTT 58.947 50.000 0.00 0.00 0.00 3.16
1415 1791 3.587933 GAGCTCCTCGTCGGCGAT 61.588 66.667 14.65 0.00 46.80 4.58
1598 1974 4.250305 ACCTTCACGTTGCGGCCT 62.250 61.111 0.00 0.00 0.00 5.19
1610 1986 2.506217 TGCGACGCGATCACCTTC 60.506 61.111 15.93 0.00 0.00 3.46
1767 2146 4.219999 GGAGGCAGAGCTCGCTCC 62.220 72.222 23.23 21.85 43.70 4.70
1885 2264 2.954611 GCGGGTTCACTTTCCTGC 59.045 61.111 0.00 0.00 46.60 4.85
2222 2605 2.290323 GCCGGAGCAATGGTAAGGATAT 60.290 50.000 5.05 0.00 39.53 1.63
2399 2782 3.268013 CGAGCACGGAAAGAACAAAAT 57.732 42.857 0.00 0.00 35.72 1.82
2513 2899 0.245539 GCATGGCATGGCATGGATAC 59.754 55.000 44.47 31.51 0.00 2.24
2514 2900 2.661054 GCATGGCATGGCATGGATA 58.339 52.632 44.47 18.86 0.00 2.59
2515 2901 3.466881 GCATGGCATGGCATGGAT 58.533 55.556 44.47 22.76 0.00 3.41
2622 3008 0.107654 AATAGTGACGGGCTTCCAGC 60.108 55.000 0.00 0.00 41.46 4.85
2655 3041 2.489329 ACATTCATGCCAGTAACAGTGC 59.511 45.455 0.00 0.00 0.00 4.40
2706 3096 9.182933 CTTCAACTTACTAGACACAGTAACTTC 57.817 37.037 0.00 0.00 36.35 3.01
2707 3097 8.693625 ACTTCAACTTACTAGACACAGTAACTT 58.306 33.333 0.00 0.00 36.35 2.66
2708 3098 8.136165 CACTTCAACTTACTAGACACAGTAACT 58.864 37.037 0.00 0.00 36.35 2.24
2709 3099 7.381678 CCACTTCAACTTACTAGACACAGTAAC 59.618 40.741 0.00 0.00 36.35 2.50
2717 3107 4.217118 TCGGACCACTTCAACTTACTAGAC 59.783 45.833 0.00 0.00 0.00 2.59
2727 3117 3.806591 GTCGATCGGACCACTTCAA 57.193 52.632 16.41 0.00 39.90 2.69
2745 3135 5.089970 TCTGATTGTCTACAACATCCTGG 57.910 43.478 0.00 0.00 38.86 4.45
2746 3136 6.111382 ACATCTGATTGTCTACAACATCCTG 58.889 40.000 0.00 0.00 38.86 3.86
2747 3137 6.305272 ACATCTGATTGTCTACAACATCCT 57.695 37.500 0.00 0.00 38.86 3.24
2749 3139 7.223582 CACCTACATCTGATTGTCTACAACATC 59.776 40.741 0.00 0.00 38.86 3.06
2750 3140 7.044181 CACCTACATCTGATTGTCTACAACAT 58.956 38.462 0.00 0.00 38.86 2.71
2751 3141 6.210584 TCACCTACATCTGATTGTCTACAACA 59.789 38.462 0.00 0.00 38.86 3.33
2759 3149 5.828328 TCTACGATCACCTACATCTGATTGT 59.172 40.000 5.95 5.95 42.08 2.71
2761 3151 6.205853 GTCTCTACGATCACCTACATCTGATT 59.794 42.308 0.00 0.00 0.00 2.57
2786 3176 2.209838 AATCCGTATGTCGCACTCTG 57.790 50.000 0.00 0.00 38.35 3.35
2788 3178 2.810650 AGAAATCCGTATGTCGCACTC 58.189 47.619 0.00 0.00 38.35 3.51
2808 3198 4.019321 AGAGGCAGGCTGAATTTACTACAA 60.019 41.667 20.86 0.00 0.00 2.41
2815 3205 2.308275 AGAAGAGAGGCAGGCTGAATTT 59.692 45.455 20.86 0.00 0.00 1.82
2856 3246 3.007290 ACTCTTCATGAACAGCTACTGCA 59.993 43.478 10.32 0.00 42.74 4.41
2857 3247 3.594134 ACTCTTCATGAACAGCTACTGC 58.406 45.455 10.32 0.00 34.37 4.40
2858 3248 5.233225 TGAACTCTTCATGAACAGCTACTG 58.767 41.667 10.32 0.00 34.08 2.74
2859 3249 5.474578 TGAACTCTTCATGAACAGCTACT 57.525 39.130 10.32 0.00 34.08 2.57
2860 3250 4.092675 GCTGAACTCTTCATGAACAGCTAC 59.907 45.833 27.80 14.16 40.13 3.58
2876 3266 0.886490 CGCAAAGGTCCTGCTGAACT 60.886 55.000 5.57 0.00 45.29 3.01
2877 3267 1.576421 CGCAAAGGTCCTGCTGAAC 59.424 57.895 5.57 0.00 37.67 3.18
2878 3268 1.600636 CCGCAAAGGTCCTGCTGAA 60.601 57.895 5.57 0.00 37.67 3.02
2879 3269 2.032528 CCGCAAAGGTCCTGCTGA 59.967 61.111 5.57 0.00 37.67 4.26
2899 3289 9.770503 GCTCGAGAGAATTTATGTATACGATTA 57.229 33.333 18.75 0.00 41.32 1.75
2900 3290 7.755822 GGCTCGAGAGAATTTATGTATACGATT 59.244 37.037 18.75 0.00 41.32 3.34
2901 3291 7.121463 AGGCTCGAGAGAATTTATGTATACGAT 59.879 37.037 18.75 0.00 41.32 3.73
2902 3292 6.430308 AGGCTCGAGAGAATTTATGTATACGA 59.570 38.462 18.75 0.00 41.32 3.43
2903 3293 6.613233 AGGCTCGAGAGAATTTATGTATACG 58.387 40.000 18.75 0.00 41.32 3.06
2904 3294 7.030768 GGAGGCTCGAGAGAATTTATGTATAC 58.969 42.308 18.75 0.00 41.32 1.47
2905 3295 6.719829 TGGAGGCTCGAGAGAATTTATGTATA 59.280 38.462 18.75 0.00 41.32 1.47
2906 3296 5.540337 TGGAGGCTCGAGAGAATTTATGTAT 59.460 40.000 18.75 0.00 41.32 2.29
2907 3297 4.893524 TGGAGGCTCGAGAGAATTTATGTA 59.106 41.667 18.75 0.00 41.32 2.29
2908 3298 3.706594 TGGAGGCTCGAGAGAATTTATGT 59.293 43.478 18.75 0.00 41.32 2.29
2909 3299 4.327982 TGGAGGCTCGAGAGAATTTATG 57.672 45.455 18.75 0.00 41.32 1.90
2910 3300 5.559148 AATGGAGGCTCGAGAGAATTTAT 57.441 39.130 18.75 0.00 41.32 1.40
2911 3301 5.129485 AGAAATGGAGGCTCGAGAGAATTTA 59.871 40.000 18.75 0.00 41.32 1.40
2912 3302 3.922171 AATGGAGGCTCGAGAGAATTT 57.078 42.857 18.75 0.00 41.32 1.82
2913 3303 3.454082 AGAAATGGAGGCTCGAGAGAATT 59.546 43.478 18.75 5.11 41.32 2.17
2914 3304 3.037549 AGAAATGGAGGCTCGAGAGAAT 58.962 45.455 18.75 0.00 41.32 2.40
2915 3305 2.461695 AGAAATGGAGGCTCGAGAGAA 58.538 47.619 18.75 0.00 41.32 2.87
2916 3306 2.151502 AGAAATGGAGGCTCGAGAGA 57.848 50.000 18.75 0.00 39.12 3.10
2917 3307 2.955660 AGTAGAAATGGAGGCTCGAGAG 59.044 50.000 18.75 0.00 0.00 3.20
2918 3308 2.690497 CAGTAGAAATGGAGGCTCGAGA 59.310 50.000 18.75 0.00 0.00 4.04
2919 3309 2.428890 ACAGTAGAAATGGAGGCTCGAG 59.571 50.000 8.45 8.45 0.00 4.04
2920 3310 2.457598 ACAGTAGAAATGGAGGCTCGA 58.542 47.619 8.69 4.75 0.00 4.04
2921 3311 2.932614 CAACAGTAGAAATGGAGGCTCG 59.067 50.000 8.69 0.00 0.00 5.03
2922 3312 3.944087 ACAACAGTAGAAATGGAGGCTC 58.056 45.455 5.78 5.78 0.00 4.70
2947 3337 3.502595 CGTATGGATGGAGTACACGATCT 59.497 47.826 13.33 0.32 0.00 2.75
2950 3340 1.951602 CCGTATGGATGGAGTACACGA 59.048 52.381 0.00 0.00 37.49 4.35
3011 3402 5.604650 TCAACACCAGGGGAAAAACAATAAT 59.395 36.000 0.00 0.00 0.00 1.28
3064 3458 2.143925 GTAGCAACAGTTGGTGAGGAC 58.856 52.381 25.19 13.13 42.14 3.85
3069 3463 2.033299 CCAGTTGTAGCAACAGTTGGTG 59.967 50.000 25.19 9.30 42.14 4.17
3091 3485 2.770164 ACCACAAGGCTAGTTGCTAG 57.230 50.000 0.00 0.00 42.39 3.42
3092 3486 2.500098 CCTACCACAAGGCTAGTTGCTA 59.500 50.000 0.00 0.00 42.39 3.49
3093 3487 1.279271 CCTACCACAAGGCTAGTTGCT 59.721 52.381 0.00 0.00 42.39 3.91
3094 3488 1.278127 TCCTACCACAAGGCTAGTTGC 59.722 52.381 0.00 0.00 39.06 4.17
3095 3489 2.832129 TCTCCTACCACAAGGCTAGTTG 59.168 50.000 0.00 0.00 39.06 3.16
3096 3490 3.185880 TCTCCTACCACAAGGCTAGTT 57.814 47.619 0.00 0.00 39.06 2.24
3097 3491 2.921834 TCTCCTACCACAAGGCTAGT 57.078 50.000 0.00 0.00 39.06 2.57
3098 3492 4.475345 AGTATCTCCTACCACAAGGCTAG 58.525 47.826 0.00 0.00 39.06 3.42
3099 3493 4.537945 AGTATCTCCTACCACAAGGCTA 57.462 45.455 0.00 0.00 39.06 3.93
3100 3494 3.406512 AGTATCTCCTACCACAAGGCT 57.593 47.619 0.00 0.00 39.06 4.58
3101 3495 3.006003 GCTAGTATCTCCTACCACAAGGC 59.994 52.174 0.00 0.00 39.06 4.35
3102 3496 4.215908 TGCTAGTATCTCCTACCACAAGG 58.784 47.826 0.00 0.00 42.21 3.61
3103 3497 5.737635 GCTTGCTAGTATCTCCTACCACAAG 60.738 48.000 0.00 0.00 37.69 3.16
3104 3498 4.099573 GCTTGCTAGTATCTCCTACCACAA 59.900 45.833 0.00 0.00 0.00 3.33
3105 3499 3.637229 GCTTGCTAGTATCTCCTACCACA 59.363 47.826 0.00 0.00 0.00 4.17
3106 3500 3.637229 TGCTTGCTAGTATCTCCTACCAC 59.363 47.826 0.00 0.00 0.00 4.16
3107 3501 3.910989 TGCTTGCTAGTATCTCCTACCA 58.089 45.455 0.00 0.00 0.00 3.25
3108 3502 4.322349 CCATGCTTGCTAGTATCTCCTACC 60.322 50.000 0.00 0.00 0.00 3.18
3109 3503 4.815269 CCATGCTTGCTAGTATCTCCTAC 58.185 47.826 0.00 0.00 0.00 3.18
3110 3504 3.259374 GCCATGCTTGCTAGTATCTCCTA 59.741 47.826 0.00 0.00 0.00 2.94
3111 3505 2.038295 GCCATGCTTGCTAGTATCTCCT 59.962 50.000 0.00 0.00 0.00 3.69
3112 3506 2.224378 TGCCATGCTTGCTAGTATCTCC 60.224 50.000 0.00 0.00 0.00 3.71
3113 3507 3.117491 TGCCATGCTTGCTAGTATCTC 57.883 47.619 0.00 0.00 0.00 2.75
3114 3508 3.474600 CTTGCCATGCTTGCTAGTATCT 58.525 45.455 0.00 0.00 0.00 1.98
3115 3509 2.551459 CCTTGCCATGCTTGCTAGTATC 59.449 50.000 0.00 0.00 30.99 2.24
3116 3510 2.579873 CCTTGCCATGCTTGCTAGTAT 58.420 47.619 0.00 0.00 30.99 2.12
3117 3511 1.408683 CCCTTGCCATGCTTGCTAGTA 60.409 52.381 0.00 0.00 30.99 1.82
3118 3512 0.682209 CCCTTGCCATGCTTGCTAGT 60.682 55.000 0.00 0.00 30.99 2.57
3119 3513 0.682209 ACCCTTGCCATGCTTGCTAG 60.682 55.000 0.00 0.00 0.00 3.42
3120 3514 0.251742 AACCCTTGCCATGCTTGCTA 60.252 50.000 0.00 0.00 0.00 3.49
3121 3515 0.251742 TAACCCTTGCCATGCTTGCT 60.252 50.000 0.00 0.00 0.00 3.91
3122 3516 0.826062 ATAACCCTTGCCATGCTTGC 59.174 50.000 0.00 0.00 0.00 4.01
3123 3517 2.381911 AGATAACCCTTGCCATGCTTG 58.618 47.619 0.00 0.00 0.00 4.01
3124 3518 2.834638 AGATAACCCTTGCCATGCTT 57.165 45.000 0.00 0.00 0.00 3.91
3125 3519 2.243221 AGAAGATAACCCTTGCCATGCT 59.757 45.455 0.00 0.00 0.00 3.79
3126 3520 2.620585 GAGAAGATAACCCTTGCCATGC 59.379 50.000 0.00 0.00 0.00 4.06
3127 3521 3.881688 CAGAGAAGATAACCCTTGCCATG 59.118 47.826 0.00 0.00 0.00 3.66
3128 3522 3.525199 ACAGAGAAGATAACCCTTGCCAT 59.475 43.478 0.00 0.00 0.00 4.40
3129 3523 2.912956 ACAGAGAAGATAACCCTTGCCA 59.087 45.455 0.00 0.00 0.00 4.92
3130 3524 3.636153 ACAGAGAAGATAACCCTTGCC 57.364 47.619 0.00 0.00 0.00 4.52
3131 3525 5.128008 AGAGTACAGAGAAGATAACCCTTGC 59.872 44.000 0.00 0.00 0.00 4.01
3132 3526 6.153680 ACAGAGTACAGAGAAGATAACCCTTG 59.846 42.308 0.00 0.00 0.00 3.61
3133 3527 6.257586 ACAGAGTACAGAGAAGATAACCCTT 58.742 40.000 0.00 0.00 0.00 3.95
3134 3528 5.833340 ACAGAGTACAGAGAAGATAACCCT 58.167 41.667 0.00 0.00 0.00 4.34
3135 3529 6.238814 GCTACAGAGTACAGAGAAGATAACCC 60.239 46.154 0.00 0.00 0.00 4.11
3136 3530 6.319152 TGCTACAGAGTACAGAGAAGATAACC 59.681 42.308 0.00 0.00 0.00 2.85
3137 3531 7.323049 TGCTACAGAGTACAGAGAAGATAAC 57.677 40.000 0.00 0.00 0.00 1.89
3138 3532 7.829706 TCTTGCTACAGAGTACAGAGAAGATAA 59.170 37.037 0.00 0.00 0.00 1.75
3139 3533 7.339482 TCTTGCTACAGAGTACAGAGAAGATA 58.661 38.462 0.00 0.00 0.00 1.98
3140 3534 6.184068 TCTTGCTACAGAGTACAGAGAAGAT 58.816 40.000 0.00 0.00 0.00 2.40
3141 3535 5.561679 TCTTGCTACAGAGTACAGAGAAGA 58.438 41.667 0.00 0.00 0.00 2.87
3142 3536 5.645929 TCTCTTGCTACAGAGTACAGAGAAG 59.354 44.000 0.00 0.00 41.18 2.85
3143 3537 5.561679 TCTCTTGCTACAGAGTACAGAGAA 58.438 41.667 0.00 0.00 41.18 2.87
3144 3538 5.167303 TCTCTTGCTACAGAGTACAGAGA 57.833 43.478 0.00 0.00 41.18 3.10
3145 3539 5.392595 GGTTCTCTTGCTACAGAGTACAGAG 60.393 48.000 14.94 0.00 40.97 3.35
3146 3540 4.459685 GGTTCTCTTGCTACAGAGTACAGA 59.540 45.833 14.94 0.00 40.97 3.41
3147 3541 4.673061 CGGTTCTCTTGCTACAGAGTACAG 60.673 50.000 14.94 9.97 40.97 2.74
3148 3542 3.190744 CGGTTCTCTTGCTACAGAGTACA 59.809 47.826 14.94 0.07 40.97 2.90
3149 3543 3.439476 TCGGTTCTCTTGCTACAGAGTAC 59.561 47.826 7.69 8.09 41.18 2.73
3150 3544 3.682696 TCGGTTCTCTTGCTACAGAGTA 58.317 45.455 7.69 0.00 41.18 2.59
3151 3545 2.490115 CTCGGTTCTCTTGCTACAGAGT 59.510 50.000 7.69 0.00 41.18 3.24
3152 3546 2.733858 GCTCGGTTCTCTTGCTACAGAG 60.734 54.545 0.00 0.00 41.69 3.35
3153 3547 1.202582 GCTCGGTTCTCTTGCTACAGA 59.797 52.381 0.00 0.00 0.00 3.41
3154 3548 1.067565 TGCTCGGTTCTCTTGCTACAG 60.068 52.381 0.00 0.00 0.00 2.74
3155 3549 0.966179 TGCTCGGTTCTCTTGCTACA 59.034 50.000 0.00 0.00 0.00 2.74
3156 3550 2.080286 TTGCTCGGTTCTCTTGCTAC 57.920 50.000 0.00 0.00 0.00 3.58
3157 3551 2.418746 GGATTGCTCGGTTCTCTTGCTA 60.419 50.000 0.00 0.00 0.00 3.49
3158 3552 1.677217 GGATTGCTCGGTTCTCTTGCT 60.677 52.381 0.00 0.00 0.00 3.91
3159 3553 0.729690 GGATTGCTCGGTTCTCTTGC 59.270 55.000 0.00 0.00 0.00 4.01
3160 3554 2.005451 CAGGATTGCTCGGTTCTCTTG 58.995 52.381 0.00 0.00 0.00 3.02
3161 3555 1.902508 TCAGGATTGCTCGGTTCTCTT 59.097 47.619 0.00 0.00 0.00 2.85
3162 3556 1.561643 TCAGGATTGCTCGGTTCTCT 58.438 50.000 0.00 0.00 0.00 3.10
3163 3557 2.611225 ATCAGGATTGCTCGGTTCTC 57.389 50.000 0.00 0.00 0.00 2.87
3164 3558 2.237143 TGAATCAGGATTGCTCGGTTCT 59.763 45.455 0.00 0.00 0.00 3.01
3165 3559 2.632377 TGAATCAGGATTGCTCGGTTC 58.368 47.619 0.00 0.00 0.00 3.62
3166 3560 2.787473 TGAATCAGGATTGCTCGGTT 57.213 45.000 0.00 0.00 0.00 4.44
3167 3561 4.321718 CATATGAATCAGGATTGCTCGGT 58.678 43.478 0.00 0.00 0.00 4.69
3168 3562 3.126514 GCATATGAATCAGGATTGCTCGG 59.873 47.826 6.97 0.00 0.00 4.63
3169 3563 3.181523 CGCATATGAATCAGGATTGCTCG 60.182 47.826 6.97 0.00 0.00 5.03
3170 3564 3.750130 ACGCATATGAATCAGGATTGCTC 59.250 43.478 6.97 0.00 0.00 4.26
3171 3565 3.748083 ACGCATATGAATCAGGATTGCT 58.252 40.909 6.97 0.00 0.00 3.91
3172 3566 4.494350 AACGCATATGAATCAGGATTGC 57.506 40.909 6.97 0.00 0.00 3.56
3173 3567 6.063640 TGAAACGCATATGAATCAGGATTG 57.936 37.500 6.97 0.00 0.00 2.67
3174 3568 6.698008 TTGAAACGCATATGAATCAGGATT 57.302 33.333 6.97 0.00 0.00 3.01
3175 3569 6.889301 ATTGAAACGCATATGAATCAGGAT 57.111 33.333 6.97 0.00 0.00 3.24
3176 3570 6.698008 AATTGAAACGCATATGAATCAGGA 57.302 33.333 6.97 0.00 0.00 3.86
3177 3571 6.974048 TGAAATTGAAACGCATATGAATCAGG 59.026 34.615 6.97 0.00 0.00 3.86
3178 3572 7.974243 TGAAATTGAAACGCATATGAATCAG 57.026 32.000 6.97 0.00 0.00 2.90
3179 3573 7.275341 GGTTGAAATTGAAACGCATATGAATCA 59.725 33.333 6.97 1.68 0.00 2.57
3180 3574 7.254084 GGGTTGAAATTGAAACGCATATGAATC 60.254 37.037 6.97 0.00 38.64 2.52
3181 3575 6.534793 GGGTTGAAATTGAAACGCATATGAAT 59.465 34.615 6.97 0.00 38.64 2.57
3182 3576 5.866633 GGGTTGAAATTGAAACGCATATGAA 59.133 36.000 6.97 0.00 38.64 2.57
3183 3577 5.047731 TGGGTTGAAATTGAAACGCATATGA 60.048 36.000 6.97 0.00 42.25 2.15
3184 3578 5.062058 GTGGGTTGAAATTGAAACGCATATG 59.938 40.000 19.55 0.00 46.60 1.78
3185 3579 5.167845 GTGGGTTGAAATTGAAACGCATAT 58.832 37.500 19.55 0.00 46.60 1.78
3186 3580 4.038042 TGTGGGTTGAAATTGAAACGCATA 59.962 37.500 19.55 16.06 46.60 3.14
3187 3581 3.181471 TGTGGGTTGAAATTGAAACGCAT 60.181 39.130 19.55 0.00 46.60 4.73
3188 3582 2.166459 TGTGGGTTGAAATTGAAACGCA 59.834 40.909 15.20 15.20 44.11 5.24
3189 3583 2.538037 GTGTGGGTTGAAATTGAAACGC 59.462 45.455 11.48 11.48 39.09 4.84
3190 3584 3.775202 TGTGTGGGTTGAAATTGAAACG 58.225 40.909 0.00 0.00 0.00 3.60
3191 3585 4.570369 CCTTGTGTGGGTTGAAATTGAAAC 59.430 41.667 0.00 0.00 0.00 2.78
3192 3586 4.467795 TCCTTGTGTGGGTTGAAATTGAAA 59.532 37.500 0.00 0.00 0.00 2.69
3193 3587 4.026744 TCCTTGTGTGGGTTGAAATTGAA 58.973 39.130 0.00 0.00 0.00 2.69
3194 3588 3.636300 CTCCTTGTGTGGGTTGAAATTGA 59.364 43.478 0.00 0.00 0.00 2.57
3195 3589 3.243839 CCTCCTTGTGTGGGTTGAAATTG 60.244 47.826 0.00 0.00 0.00 2.32
3196 3590 2.965147 CCTCCTTGTGTGGGTTGAAATT 59.035 45.455 0.00 0.00 0.00 1.82
3197 3591 2.176798 TCCTCCTTGTGTGGGTTGAAAT 59.823 45.455 0.00 0.00 0.00 2.17
3198 3592 1.566703 TCCTCCTTGTGTGGGTTGAAA 59.433 47.619 0.00 0.00 0.00 2.69
3199 3593 1.142870 CTCCTCCTTGTGTGGGTTGAA 59.857 52.381 0.00 0.00 0.00 2.69
3200 3594 0.764890 CTCCTCCTTGTGTGGGTTGA 59.235 55.000 0.00 0.00 0.00 3.18
3201 3595 0.890996 GCTCCTCCTTGTGTGGGTTG 60.891 60.000 0.00 0.00 0.00 3.77
3202 3596 1.456287 GCTCCTCCTTGTGTGGGTT 59.544 57.895 0.00 0.00 0.00 4.11
3203 3597 2.883828 CGCTCCTCCTTGTGTGGGT 61.884 63.158 0.00 0.00 0.00 4.51
3204 3598 2.046892 CGCTCCTCCTTGTGTGGG 60.047 66.667 0.00 0.00 0.00 4.61
3205 3599 2.743928 GCGCTCCTCCTTGTGTGG 60.744 66.667 0.00 0.00 0.00 4.17
3206 3600 2.031012 TGCGCTCCTCCTTGTGTG 59.969 61.111 9.73 0.00 0.00 3.82
3207 3601 1.758440 TTCTGCGCTCCTCCTTGTGT 61.758 55.000 9.73 0.00 0.00 3.72
3208 3602 1.004560 TTCTGCGCTCCTCCTTGTG 60.005 57.895 9.73 0.00 0.00 3.33
3209 3603 1.004440 GTTCTGCGCTCCTCCTTGT 60.004 57.895 9.73 0.00 0.00 3.16
3210 3604 1.018226 CAGTTCTGCGCTCCTCCTTG 61.018 60.000 9.73 0.00 0.00 3.61
3211 3605 1.294780 CAGTTCTGCGCTCCTCCTT 59.705 57.895 9.73 0.00 0.00 3.36
3212 3606 2.977178 CAGTTCTGCGCTCCTCCT 59.023 61.111 9.73 0.00 0.00 3.69
3213 3607 2.817396 GCAGTTCTGCGCTCCTCC 60.817 66.667 9.73 0.00 0.00 4.30
3214 3608 2.047844 TGCAGTTCTGCGCTCCTC 60.048 61.111 17.95 0.00 37.69 3.71
3215 3609 2.047465 CTGCAGTTCTGCGCTCCT 60.047 61.111 17.95 0.00 37.69 3.69
3216 3610 2.047844 TCTGCAGTTCTGCGCTCC 60.048 61.111 14.67 0.00 37.69 4.70
3217 3611 2.738695 GCTCTGCAGTTCTGCGCTC 61.739 63.158 14.67 5.62 37.69 5.03
3218 3612 2.741598 GCTCTGCAGTTCTGCGCT 60.742 61.111 14.67 0.00 37.69 5.92
3219 3613 2.121564 TTTGCTCTGCAGTTCTGCGC 62.122 55.000 14.67 15.47 40.61 6.09
3220 3614 0.520404 ATTTGCTCTGCAGTTCTGCG 59.480 50.000 14.67 13.18 40.61 5.18
3221 3615 1.538512 TCATTTGCTCTGCAGTTCTGC 59.461 47.619 14.67 16.65 40.61 4.26
3222 3616 2.812591 ACTCATTTGCTCTGCAGTTCTG 59.187 45.455 14.67 4.15 40.61 3.02
3223 3617 2.812591 CACTCATTTGCTCTGCAGTTCT 59.187 45.455 14.67 0.00 40.61 3.01
3224 3618 2.095364 CCACTCATTTGCTCTGCAGTTC 60.095 50.000 14.67 7.30 40.61 3.01
3225 3619 1.884579 CCACTCATTTGCTCTGCAGTT 59.115 47.619 14.67 0.00 40.61 3.16
3226 3620 1.531423 CCACTCATTTGCTCTGCAGT 58.469 50.000 14.67 0.00 40.61 4.40
3227 3621 0.170561 GCCACTCATTTGCTCTGCAG 59.829 55.000 7.63 7.63 40.61 4.41
3228 3622 0.537828 TGCCACTCATTTGCTCTGCA 60.538 50.000 0.00 0.00 36.47 4.41
3229 3623 0.815734 ATGCCACTCATTTGCTCTGC 59.184 50.000 0.00 0.00 29.16 4.26
3230 3624 2.089201 TGATGCCACTCATTTGCTCTG 58.911 47.619 0.00 0.00 35.05 3.35
3231 3625 2.502142 TGATGCCACTCATTTGCTCT 57.498 45.000 0.00 0.00 35.05 4.09
3232 3626 3.248266 GTTTGATGCCACTCATTTGCTC 58.752 45.455 0.00 0.00 35.05 4.26
3233 3627 2.629137 TGTTTGATGCCACTCATTTGCT 59.371 40.909 0.00 0.00 35.05 3.91
3234 3628 3.029320 TGTTTGATGCCACTCATTTGC 57.971 42.857 0.00 0.00 35.05 3.68
3235 3629 4.811908 TCATGTTTGATGCCACTCATTTG 58.188 39.130 0.00 0.00 35.05 2.32
3236 3630 5.657474 GATCATGTTTGATGCCACTCATTT 58.343 37.500 0.00 0.00 42.73 2.32
3237 3631 4.201980 CGATCATGTTTGATGCCACTCATT 60.202 41.667 0.00 0.00 42.73 2.57
3238 3632 3.314357 CGATCATGTTTGATGCCACTCAT 59.686 43.478 0.00 0.00 42.73 2.90
3239 3633 2.679336 CGATCATGTTTGATGCCACTCA 59.321 45.455 0.00 0.00 42.73 3.41
3240 3634 2.540361 GCGATCATGTTTGATGCCACTC 60.540 50.000 0.00 0.00 42.73 3.51
3241 3635 1.402968 GCGATCATGTTTGATGCCACT 59.597 47.619 0.00 0.00 42.73 4.00
3242 3636 1.132834 TGCGATCATGTTTGATGCCAC 59.867 47.619 0.00 0.00 42.73 5.01
3243 3637 1.402613 CTGCGATCATGTTTGATGCCA 59.597 47.619 0.00 0.00 42.73 4.92
3244 3638 1.862815 GCTGCGATCATGTTTGATGCC 60.863 52.381 0.00 0.00 42.73 4.40
3245 3639 1.474017 GCTGCGATCATGTTTGATGC 58.526 50.000 0.00 0.00 42.73 3.91
3246 3640 1.063027 ACGCTGCGATCATGTTTGATG 59.937 47.619 30.47 0.00 42.73 3.07
3247 3641 1.372582 ACGCTGCGATCATGTTTGAT 58.627 45.000 30.47 0.00 45.39 2.57
3248 3642 1.658596 GTACGCTGCGATCATGTTTGA 59.341 47.619 30.47 0.00 36.00 2.69
3249 3643 1.393196 TGTACGCTGCGATCATGTTTG 59.607 47.619 30.47 0.00 0.00 2.93
3250 3644 1.720805 TGTACGCTGCGATCATGTTT 58.279 45.000 30.47 5.86 0.00 2.83
3251 3645 1.939974 ATGTACGCTGCGATCATGTT 58.060 45.000 30.47 6.68 0.00 2.71
3252 3646 2.223711 TGTATGTACGCTGCGATCATGT 60.224 45.455 30.47 14.11 0.00 3.21
3253 3647 2.393764 TGTATGTACGCTGCGATCATG 58.606 47.619 30.47 0.00 0.00 3.07
3254 3648 2.793278 TGTATGTACGCTGCGATCAT 57.207 45.000 30.47 28.29 0.00 2.45
3255 3649 2.793278 ATGTATGTACGCTGCGATCA 57.207 45.000 30.47 24.34 0.00 2.92
3256 3650 3.561503 TGTATGTATGTACGCTGCGATC 58.438 45.455 30.47 19.73 0.00 3.69
3257 3651 3.636282 TGTATGTATGTACGCTGCGAT 57.364 42.857 30.47 14.40 0.00 4.58
3258 3652 3.636282 ATGTATGTATGTACGCTGCGA 57.364 42.857 30.47 6.73 0.00 5.10
3259 3653 4.223659 TGTATGTATGTATGTACGCTGCG 58.776 43.478 21.91 21.91 0.00 5.18
3260 3654 5.458015 TCTGTATGTATGTATGTACGCTGC 58.542 41.667 0.00 0.00 0.00 5.25
3261 3655 9.788960 ATTATCTGTATGTATGTATGTACGCTG 57.211 33.333 0.00 0.00 0.00 5.18
3262 3656 9.788960 CATTATCTGTATGTATGTATGTACGCT 57.211 33.333 0.00 0.00 0.00 5.07
3263 3657 8.532341 GCATTATCTGTATGTATGTATGTACGC 58.468 37.037 0.00 0.00 0.00 4.42
3264 3658 9.020813 GGCATTATCTGTATGTATGTATGTACG 57.979 37.037 0.00 0.00 0.00 3.67
3265 3659 9.020813 CGGCATTATCTGTATGTATGTATGTAC 57.979 37.037 0.00 0.00 0.00 2.90
3266 3660 8.745590 ACGGCATTATCTGTATGTATGTATGTA 58.254 33.333 0.00 0.00 0.00 2.29
3267 3661 7.611770 ACGGCATTATCTGTATGTATGTATGT 58.388 34.615 0.00 0.00 0.00 2.29
3268 3662 8.382875 CAACGGCATTATCTGTATGTATGTATG 58.617 37.037 0.00 0.00 0.00 2.39
3269 3663 7.064609 GCAACGGCATTATCTGTATGTATGTAT 59.935 37.037 0.00 0.00 40.72 2.29
3270 3664 6.367695 GCAACGGCATTATCTGTATGTATGTA 59.632 38.462 0.00 0.00 40.72 2.29
3271 3665 5.179368 GCAACGGCATTATCTGTATGTATGT 59.821 40.000 0.00 0.00 40.72 2.29
3272 3666 5.390885 GGCAACGGCATTATCTGTATGTATG 60.391 44.000 0.00 0.00 43.71 2.39
3273 3667 4.695455 GGCAACGGCATTATCTGTATGTAT 59.305 41.667 0.00 0.00 43.71 2.29
3274 3668 4.062293 GGCAACGGCATTATCTGTATGTA 58.938 43.478 0.00 0.00 43.71 2.29
3275 3669 2.878406 GGCAACGGCATTATCTGTATGT 59.122 45.455 0.00 0.00 43.71 2.29
3276 3670 2.226437 GGGCAACGGCATTATCTGTATG 59.774 50.000 0.00 0.00 43.71 2.39
3277 3671 2.158682 TGGGCAACGGCATTATCTGTAT 60.159 45.455 0.00 0.00 43.71 2.29
3278 3672 1.210722 TGGGCAACGGCATTATCTGTA 59.789 47.619 0.00 0.00 43.71 2.74
3279 3673 0.034574 TGGGCAACGGCATTATCTGT 60.035 50.000 0.00 0.00 43.71 3.41
3280 3674 1.066002 CTTGGGCAACGGCATTATCTG 59.934 52.381 0.00 0.00 43.71 2.90
3281 3675 1.340991 ACTTGGGCAACGGCATTATCT 60.341 47.619 0.00 0.00 43.71 1.98
3282 3676 1.102978 ACTTGGGCAACGGCATTATC 58.897 50.000 0.00 0.00 43.71 1.75
3283 3677 0.817013 CACTTGGGCAACGGCATTAT 59.183 50.000 0.00 0.00 43.71 1.28
3284 3678 0.250945 TCACTTGGGCAACGGCATTA 60.251 50.000 0.00 0.00 43.71 1.90
3285 3679 1.112315 TTCACTTGGGCAACGGCATT 61.112 50.000 0.00 0.00 43.71 3.56
3286 3680 0.899717 ATTCACTTGGGCAACGGCAT 60.900 50.000 0.00 0.00 43.71 4.40
3287 3681 1.112315 AATTCACTTGGGCAACGGCA 61.112 50.000 0.00 0.00 43.71 5.69
3288 3682 0.885196 TAATTCACTTGGGCAACGGC 59.115 50.000 0.00 0.00 40.13 5.68
3289 3683 2.352323 GGTTAATTCACTTGGGCAACGG 60.352 50.000 0.00 0.00 37.60 4.44
3290 3684 2.667171 CGGTTAATTCACTTGGGCAACG 60.667 50.000 0.00 0.00 37.60 4.10
3291 3685 2.554893 TCGGTTAATTCACTTGGGCAAC 59.445 45.455 0.00 0.00 0.00 4.17
3292 3686 2.817258 CTCGGTTAATTCACTTGGGCAA 59.183 45.455 0.00 0.00 0.00 4.52
3293 3687 2.432444 CTCGGTTAATTCACTTGGGCA 58.568 47.619 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.