Multiple sequence alignment - TraesCS1D01G297300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G297300 chr1D 100.000 5038 0 0 1 5038 395626551 395631588 0.000000e+00 9304.0
1 TraesCS1D01G297300 chr1D 85.773 1216 82 35 2326 3505 395714483 395715643 0.000000e+00 1203.0
2 TraesCS1D01G297300 chr1D 82.879 771 89 33 4215 4959 395798457 395799210 0.000000e+00 652.0
3 TraesCS1D01G297300 chr1D 83.073 703 90 11 1311 1985 395877367 395878068 3.330000e-171 612.0
4 TraesCS1D01G297300 chr1D 91.534 378 29 2 3840 4217 395797992 395798366 7.480000e-143 518.0
5 TraesCS1D01G297300 chr1D 89.297 327 23 5 3523 3846 395715626 395715943 2.830000e-107 399.0
6 TraesCS1D01G297300 chr1D 82.836 402 54 10 73 459 395875046 395875447 3.730000e-91 346.0
7 TraesCS1D01G297300 chr1D 78.136 590 88 33 4457 5020 395798859 395799433 2.250000e-88 337.0
8 TraesCS1D01G297300 chr1D 80.761 473 50 23 4514 4947 395799246 395799716 1.050000e-86 331.0
9 TraesCS1D01G297300 chr1D 76.694 605 101 35 4459 5038 395799023 395799612 2.950000e-77 300.0
10 TraesCS1D01G297300 chr1D 80.000 75 10 5 4965 5037 395799263 395799334 3.300000e-02 51.0
11 TraesCS1D01G297300 chr1B 91.819 1968 81 25 411 2344 526377409 526379330 0.000000e+00 2669.0
12 TraesCS1D01G297300 chr1B 92.708 1152 53 11 2377 3505 526379326 526380469 0.000000e+00 1633.0
13 TraesCS1D01G297300 chr1B 91.690 710 39 9 3523 4217 526380452 526381156 0.000000e+00 966.0
14 TraesCS1D01G297300 chr1B 86.677 623 69 12 4216 4829 526381317 526381934 0.000000e+00 678.0
15 TraesCS1D01G297300 chr1B 82.493 754 100 12 1311 2036 526428736 526429485 2.560000e-177 632.0
16 TraesCS1D01G297300 chr1B 81.359 574 92 10 1327 1888 525894612 525895182 2.140000e-123 453.0
17 TraesCS1D01G297300 chr1B 95.000 220 11 0 16 235 526376986 526377205 3.730000e-91 346.0
18 TraesCS1D01G297300 chr1B 91.192 193 17 0 450 642 526428625 526428817 3.870000e-66 263.0
19 TraesCS1D01G297300 chr1B 88.820 161 14 2 222 378 526377250 526377410 1.430000e-45 195.0
20 TraesCS1D01G297300 chr1B 89.474 57 6 0 2086 2142 523382561 523382505 7.000000e-09 73.1
21 TraesCS1D01G297300 chr1B 89.474 57 6 0 2086 2142 525834332 525834388 7.000000e-09 73.1
22 TraesCS1D01G297300 chr1A 92.448 1483 91 14 959 2425 489921518 489922995 0.000000e+00 2098.0
23 TraesCS1D01G297300 chr1A 93.875 702 39 4 959 1659 490087083 490087781 0.000000e+00 1055.0
24 TraesCS1D01G297300 chr1A 82.695 757 96 15 1311 2036 490019048 490019800 1.530000e-179 640.0
25 TraesCS1D01G297300 chr1A 83.003 706 79 20 1311 1984 490109113 490109809 7.220000e-168 601.0
26 TraesCS1D01G297300 chr1A 91.369 336 28 1 1 336 489918455 489918789 4.600000e-125 459.0
27 TraesCS1D01G297300 chr1A 81.404 570 96 7 1327 1888 489236511 489237078 1.650000e-124 457.0
28 TraesCS1D01G297300 chr1A 91.071 336 29 1 1 336 490084059 490084393 2.140000e-123 453.0
29 TraesCS1D01G297300 chr1A 80.203 591 73 27 2931 3505 490020015 490020577 2.180000e-108 403.0
30 TraesCS1D01G297300 chr1A 80.034 591 74 27 2931 3505 490110073 490110635 1.020000e-106 398.0
31 TraesCS1D01G297300 chr1A 81.761 477 65 8 299 754 489919334 489919809 3.680000e-101 379.0
32 TraesCS1D01G297300 chr1A 81.342 477 66 10 299 754 490084938 490085412 2.870000e-97 366.0
33 TraesCS1D01G297300 chr1A 80.702 456 68 18 4575 5020 490088031 490088476 2.250000e-88 337.0
34 TraesCS1D01G297300 chr1A 78.650 548 86 29 4498 5029 490088090 490088622 8.080000e-88 335.0
35 TraesCS1D01G297300 chr1A 79.381 485 75 23 4568 5038 489927565 489928038 8.140000e-83 318.0
36 TraesCS1D01G297300 chr1A 90.155 193 19 0 450 642 490018937 490019129 8.370000e-63 252.0
37 TraesCS1D01G297300 chr1A 88.601 193 15 3 450 642 490109002 490109187 1.410000e-55 228.0
38 TraesCS1D01G297300 chr1A 85.083 181 22 2 4080 4255 490087779 490087959 4.010000e-41 180.0
39 TraesCS1D01G297300 chr1A 91.176 102 4 3 751 852 490086802 490086706 3.160000e-27 134.0
40 TraesCS1D01G297300 chr1A 100.000 41 0 0 83 123 490093436 490093476 5.410000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G297300 chr1D 395626551 395631588 5037 False 9304.000000 9304 100.000000 1 5038 1 chr1D.!!$F1 5037
1 TraesCS1D01G297300 chr1D 395714483 395715943 1460 False 801.000000 1203 87.535000 2326 3846 2 chr1D.!!$F2 1520
2 TraesCS1D01G297300 chr1D 395875046 395878068 3022 False 479.000000 612 82.954500 73 1985 2 chr1D.!!$F4 1912
3 TraesCS1D01G297300 chr1D 395797992 395799716 1724 False 364.833333 652 81.667333 3840 5038 6 chr1D.!!$F3 1198
4 TraesCS1D01G297300 chr1B 526376986 526381934 4948 False 1081.166667 2669 91.119000 16 4829 6 chr1B.!!$F3 4813
5 TraesCS1D01G297300 chr1B 525894612 525895182 570 False 453.000000 453 81.359000 1327 1888 1 chr1B.!!$F2 561
6 TraesCS1D01G297300 chr1B 526428625 526429485 860 False 447.500000 632 86.842500 450 2036 2 chr1B.!!$F4 1586
7 TraesCS1D01G297300 chr1A 489918455 489922995 4540 False 978.666667 2098 88.526000 1 2425 3 chr1A.!!$F4 2424
8 TraesCS1D01G297300 chr1A 489236511 489237078 567 False 457.000000 457 81.404000 1327 1888 1 chr1A.!!$F1 561
9 TraesCS1D01G297300 chr1A 490084059 490088622 4563 False 454.333333 1055 85.120500 1 5029 6 chr1A.!!$F6 5028
10 TraesCS1D01G297300 chr1A 490018937 490020577 1640 False 431.666667 640 84.351000 450 3505 3 chr1A.!!$F5 3055
11 TraesCS1D01G297300 chr1A 490109002 490110635 1633 False 409.000000 601 83.879333 450 3505 3 chr1A.!!$F7 3055

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 1013 0.035820 TAAAGTGGGCCTAGTTGCGG 60.036 55.0 10.33 0.0 0.00 5.69 F
1616 4993 0.601558 GTTCACGAGGTGCTGGACTA 59.398 55.0 0.00 0.0 32.98 2.59 F
2230 5645 0.318120 GCCCCTTGTGTTCCACATTG 59.682 55.0 0.00 0.0 44.16 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 5483 0.169009 GAAATGAAGGGAGCACGCAC 59.831 55.000 0.36 0.0 0.0 5.34 R
3284 6760 2.572290 AGTTCCACTGCAACACTAACC 58.428 47.619 0.00 0.0 0.0 2.85 R
4153 7656 0.179004 TTGGCGATGAGGGTGTTTGT 60.179 50.000 0.00 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 5.577945 GCCATGTGTCACCATTTTAAGATTG 59.422 40.000 0.00 0.00 0.00 2.67
59 60 7.549839 CCATGTGTCACCATTTTAAGATTGAT 58.450 34.615 0.00 0.00 0.00 2.57
81 82 5.806366 TTTACGGAATCGGATTTTCCTTC 57.194 39.130 4.47 0.00 40.46 3.46
151 152 8.581578 TGTAATACAACCTCCAAAATTTCCTTC 58.418 33.333 0.00 0.00 0.00 3.46
206 207 4.089361 GTCTTCTTCAATTCCCCAACCAT 58.911 43.478 0.00 0.00 0.00 3.55
261 322 7.556275 ACTGAAAATGGTTCACTGAACTAGAAA 59.444 33.333 19.14 3.87 41.70 2.52
306 950 6.122277 ACATTTCATTCATATATAGGGGCCG 58.878 40.000 0.00 0.00 0.00 6.13
325 969 2.285602 CCGAAAATGAATCGCACTACGG 60.286 50.000 0.00 0.00 43.89 4.02
367 1013 0.035820 TAAAGTGGGCCTAGTTGCGG 60.036 55.000 10.33 0.00 0.00 5.69
475 1293 3.394836 GCCACGGCTTCCTCCTCT 61.395 66.667 0.00 0.00 38.26 3.69
744 2486 1.290955 CAACGAGACGGGGCTTGTA 59.709 57.895 0.00 0.00 32.26 2.41
826 4065 2.582436 CCAATAGGCCGTCCGTGT 59.418 61.111 0.00 0.00 37.47 4.49
827 4066 1.520787 CCAATAGGCCGTCCGTGTC 60.521 63.158 0.00 0.00 37.47 3.67
828 4067 1.520787 CAATAGGCCGTCCGTGTCC 60.521 63.158 0.00 0.00 37.47 4.02
829 4068 3.072486 AATAGGCCGTCCGTGTCCG 62.072 63.158 0.00 0.00 37.47 4.79
886 4125 4.828925 GAGGTCAGAGCTGCGGGC 62.829 72.222 6.92 0.00 42.19 6.13
889 4128 4.385405 GTCAGAGCTGCGGGCACT 62.385 66.667 0.00 0.00 44.79 4.40
910 4157 2.743928 GCTCGTGAACCAGCCAGG 60.744 66.667 0.00 0.00 45.67 4.45
911 4158 2.743928 CTCGTGAACCAGCCAGGC 60.744 66.667 1.84 1.84 43.14 4.85
912 4159 3.535629 CTCGTGAACCAGCCAGGCA 62.536 63.158 15.80 0.00 43.14 4.75
913 4160 3.052082 CGTGAACCAGCCAGGCAG 61.052 66.667 15.80 5.28 43.14 4.85
922 4173 4.405671 GCCAGGCAGAGCAGAGCA 62.406 66.667 6.55 0.00 0.00 4.26
928 4179 2.187424 CAGAGCAGAGCAGCCTCC 59.813 66.667 0.00 0.00 38.96 4.30
935 4186 4.785453 GAGCAGCCTCCCCGGTTG 62.785 72.222 0.00 0.00 45.94 3.77
965 4233 1.355043 ACGACAGAAGTACTCCTCCCT 59.645 52.381 0.00 0.00 0.00 4.20
1009 4305 2.639327 GCCGCCAAAATGCTGTCCT 61.639 57.895 0.00 0.00 0.00 3.85
1118 4417 2.926242 GGGGTCCAACTCCACGGA 60.926 66.667 0.00 0.00 39.07 4.69
1616 4993 0.601558 GTTCACGAGGTGCTGGACTA 59.398 55.000 0.00 0.00 32.98 2.59
2091 5483 2.858344 CGCAACAACTTCCTATCTACCG 59.142 50.000 0.00 0.00 0.00 4.02
2094 5486 3.521947 ACAACTTCCTATCTACCGTGC 57.478 47.619 0.00 0.00 0.00 5.34
2103 5495 3.760035 CTACCGTGCGTGCTCCCT 61.760 66.667 0.00 0.00 0.00 4.20
2122 5514 3.065925 CCCTTCATTTCTTCGATCAAGCC 59.934 47.826 0.00 0.00 31.26 4.35
2137 5529 0.625849 AAGCCCGATTCCAGGTGATT 59.374 50.000 0.00 0.00 0.00 2.57
2143 5535 3.386726 CCCGATTCCAGGTGATTACAGTA 59.613 47.826 0.00 0.00 0.00 2.74
2179 5584 2.072298 GCTGTGTTGATGAGACTCCAC 58.928 52.381 0.00 1.11 0.00 4.02
2191 5606 8.193953 TGATGAGACTCCACATATATGCTTAA 57.806 34.615 12.79 0.00 0.00 1.85
2230 5645 0.318120 GCCCCTTGTGTTCCACATTG 59.682 55.000 0.00 0.00 44.16 2.82
2236 5651 3.490761 CCTTGTGTTCCACATTGGTTGTC 60.491 47.826 0.00 0.00 44.16 3.18
2237 5652 2.728007 TGTGTTCCACATTGGTTGTCA 58.272 42.857 0.00 0.00 39.62 3.58
2238 5653 3.092301 TGTGTTCCACATTGGTTGTCAA 58.908 40.909 0.00 0.00 39.62 3.18
2243 5658 3.625853 TCCACATTGGTTGTCAACTTGA 58.374 40.909 15.17 2.69 39.03 3.02
2250 5666 1.336240 GGTTGTCAACTTGAGCATGCC 60.336 52.381 15.66 6.65 0.00 4.40
2252 5668 2.813754 GTTGTCAACTTGAGCATGCCTA 59.186 45.455 15.66 0.00 0.00 3.93
2278 5694 4.600692 TTGTCCAAATGTCTCTTCGAGA 57.399 40.909 0.00 0.00 36.22 4.04
2286 5702 7.020010 CCAAATGTCTCTTCGAGAATTTCAAG 58.980 38.462 0.00 0.00 40.59 3.02
2289 5705 6.025749 TGTCTCTTCGAGAATTTCAAGCTA 57.974 37.500 0.00 0.00 40.59 3.32
2291 5707 6.754209 TGTCTCTTCGAGAATTTCAAGCTATC 59.246 38.462 0.00 0.00 40.59 2.08
2308 5724 4.576463 AGCTATCGGTTTTCCAATCATGTC 59.424 41.667 0.00 0.00 40.70 3.06
2313 5729 3.671433 CGGTTTTCCAATCATGTCAGCTG 60.671 47.826 7.63 7.63 40.70 4.24
2380 5796 9.593134 AGTAGTATGAGTGATTTAGCTTTTGAG 57.407 33.333 0.00 0.00 0.00 3.02
2388 5804 6.151648 AGTGATTTAGCTTTTGAGCAGCAATA 59.848 34.615 0.00 0.00 39.99 1.90
2400 5816 9.559732 TTTTGAGCAGCAATATTTAGAGCTATA 57.440 29.630 0.00 0.00 36.15 1.31
2412 5828 6.919775 TTTAGAGCTATATTCCCTGTCCTC 57.080 41.667 0.00 0.00 0.00 3.71
2441 5857 9.430399 ACACTGTAGCTTAGGTTAATCCTATAA 57.570 33.333 0.00 0.00 46.81 0.98
2534 5970 5.449297 TCATGGGAGAAATCCAACATGTA 57.551 39.130 0.00 0.00 37.87 2.29
2631 6067 2.560105 AGCAGCCTTCTTTGGTGATTTC 59.440 45.455 0.00 0.00 0.00 2.17
3089 6545 8.491045 TTATCTGTATGTCATCCACTATTCCA 57.509 34.615 0.00 0.00 0.00 3.53
3090 6546 6.161855 TCTGTATGTCATCCACTATTCCAC 57.838 41.667 0.00 0.00 0.00 4.02
3091 6547 5.899547 TCTGTATGTCATCCACTATTCCACT 59.100 40.000 0.00 0.00 0.00 4.00
3104 6560 5.586243 CACTATTCCACTCACATGTTTAGGG 59.414 44.000 0.00 0.00 0.00 3.53
3250 6724 4.282449 TCCTCCAGTAAGAAAATGTCGTCA 59.718 41.667 0.00 0.00 0.00 4.35
3265 6739 7.609760 AATGTCGTCATTATTGAAGTTAGCA 57.390 32.000 6.08 0.00 41.76 3.49
3269 6743 6.901887 GTCGTCATTATTGAAGTTAGCATGTG 59.098 38.462 0.00 0.00 33.63 3.21
3284 6760 5.633830 AGCATGTGATTGGTTAAGTTCTG 57.366 39.130 0.00 0.00 0.00 3.02
3339 6816 9.920133 TTATTTGCTAAATACACATGCTCAAAA 57.080 25.926 0.00 0.00 33.32 2.44
3365 6844 2.568696 TTGTCGCAGATCTCTGTAGC 57.431 50.000 8.87 0.00 45.45 3.58
3505 6988 7.336931 TGTTTTCTGAACTAGCTTCCATTATCC 59.663 37.037 0.00 0.00 0.00 2.59
3506 6989 5.552870 TCTGAACTAGCTTCCATTATCCC 57.447 43.478 0.00 0.00 0.00 3.85
3507 6990 4.348168 TCTGAACTAGCTTCCATTATCCCC 59.652 45.833 0.00 0.00 0.00 4.81
3508 6991 3.394606 TGAACTAGCTTCCATTATCCCCC 59.605 47.826 0.00 0.00 0.00 5.40
3591 7082 2.424557 AGCTGATGAAGTGCAGAACTG 58.575 47.619 0.00 0.00 39.81 3.16
3622 7113 4.873827 GGCAATACATCGTTTTGAGACCTA 59.126 41.667 2.11 0.00 28.57 3.08
3665 7156 1.952990 TGACCATTTTCTTCGCAGCAA 59.047 42.857 0.00 0.00 0.00 3.91
3671 7162 1.838112 TTTCTTCGCAGCAATCCCAT 58.162 45.000 0.00 0.00 0.00 4.00
3673 7164 1.838112 TCTTCGCAGCAATCCCATTT 58.162 45.000 0.00 0.00 0.00 2.32
3684 7175 4.773674 AGCAATCCCATTTTCAAGACATGA 59.226 37.500 0.00 0.00 35.85 3.07
3720 7215 9.842775 AGATGATAGCTCAGTTATTCATTTCAA 57.157 29.630 0.00 0.00 34.12 2.69
3749 7244 4.326504 AAGGACATGCTTTGGTTTTCTG 57.673 40.909 0.00 0.00 0.00 3.02
3835 7333 9.141400 CTCAGGTTTCTAACAATCAAGTAGTAC 57.859 37.037 0.00 0.00 0.00 2.73
3857 7355 1.789078 GATGCGTGATGGGTGATGGC 61.789 60.000 0.00 0.00 0.00 4.40
3874 7372 2.038269 GCGGGACTCGGATTTTGCA 61.038 57.895 0.00 0.00 39.69 4.08
3876 7374 1.369091 CGGGACTCGGATTTTGCAGG 61.369 60.000 0.00 0.00 34.75 4.85
3937 7435 4.772624 TGTTCAGACTCCATACTAAGCAGT 59.227 41.667 0.00 0.00 38.91 4.40
3958 7456 0.738975 CACGCTCATCCCTTCGTAGA 59.261 55.000 0.00 0.00 33.51 2.59
4044 7542 4.406069 ACAAATTGATGATGAGCGTTTCG 58.594 39.130 0.00 0.00 0.00 3.46
4052 7550 6.683715 TGATGATGAGCGTTTCGGTATTATA 58.316 36.000 0.00 0.00 37.83 0.98
4171 7674 0.179004 AACAAACACCCTCATCGCCA 60.179 50.000 0.00 0.00 0.00 5.69
4235 7900 6.239036 CCACGTAGATCTTATCCAGTCATTCA 60.239 42.308 0.00 0.00 0.00 2.57
4244 7909 2.267426 TCCAGTCATTCATTGTACGCG 58.733 47.619 3.53 3.53 0.00 6.01
4255 7920 2.173758 TTGTACGCGGATTCCTGGCA 62.174 55.000 12.47 0.00 0.00 4.92
4259 7924 2.586792 GCGGATTCCTGGCAGACT 59.413 61.111 17.94 0.00 0.00 3.24
4268 7933 1.009389 CCTGGCAGACTCGTCGTTTC 61.009 60.000 17.94 0.00 34.09 2.78
4271 7936 1.202486 TGGCAGACTCGTCGTTTCTTT 60.202 47.619 0.00 0.00 34.09 2.52
4272 7937 1.456165 GGCAGACTCGTCGTTTCTTTC 59.544 52.381 0.00 0.00 34.09 2.62
4316 7984 1.807771 AAGGTCACGAGGTAGGGGGA 61.808 60.000 0.00 0.00 0.00 4.81
4373 8055 4.460731 GCTGAGAGGCCTTTCTAAACATTT 59.539 41.667 22.86 0.00 0.00 2.32
4487 8172 8.253113 GGCAGTTTTATATTTATAGCATGGCAT 58.747 33.333 0.00 0.00 0.00 4.40
4520 8205 8.503458 AGAGGATGACAATTTCTGTTATTCAG 57.497 34.615 0.00 0.00 44.85 3.02
4549 8234 9.869844 GATGGTATTTTTATTGTTGAGAGATCG 57.130 33.333 0.00 0.00 0.00 3.69
4550 8235 7.693952 TGGTATTTTTATTGTTGAGAGATCGC 58.306 34.615 0.00 0.00 0.00 4.58
4551 8236 7.335673 TGGTATTTTTATTGTTGAGAGATCGCA 59.664 33.333 0.00 0.00 0.00 5.10
4552 8237 8.345565 GGTATTTTTATTGTTGAGAGATCGCAT 58.654 33.333 0.00 0.00 0.00 4.73
4553 8238 9.722056 GTATTTTTATTGTTGAGAGATCGCATT 57.278 29.630 0.00 0.00 0.00 3.56
4554 8239 8.624701 ATTTTTATTGTTGAGAGATCGCATTG 57.375 30.769 0.00 0.00 0.00 2.82
4555 8240 6.983474 TTTATTGTTGAGAGATCGCATTGA 57.017 33.333 0.00 0.00 0.00 2.57
4556 8241 7.558161 TTTATTGTTGAGAGATCGCATTGAT 57.442 32.000 0.00 0.00 41.06 2.57
4557 8242 8.661352 TTTATTGTTGAGAGATCGCATTGATA 57.339 30.769 0.00 0.00 37.47 2.15
4558 8243 8.837788 TTATTGTTGAGAGATCGCATTGATAT 57.162 30.769 0.00 0.00 37.47 1.63
4559 8244 9.927668 TTATTGTTGAGAGATCGCATTGATATA 57.072 29.630 0.00 0.00 37.47 0.86
4561 8246 7.823149 TGTTGAGAGATCGCATTGATATATG 57.177 36.000 0.00 0.00 37.47 1.78
4562 8247 7.381323 TGTTGAGAGATCGCATTGATATATGT 58.619 34.615 0.00 0.00 37.47 2.29
4563 8248 7.330208 TGTTGAGAGATCGCATTGATATATGTG 59.670 37.037 0.00 0.00 37.47 3.21
4564 8249 7.161773 TGAGAGATCGCATTGATATATGTGA 57.838 36.000 4.59 4.59 45.87 3.58
4565 8250 7.256286 TGAGAGATCGCATTGATATATGTGAG 58.744 38.462 7.57 0.00 45.25 3.51
4566 8251 7.121759 TGAGAGATCGCATTGATATATGTGAGA 59.878 37.037 7.57 0.00 45.25 3.27
4567 8252 7.482474 AGAGATCGCATTGATATATGTGAGAG 58.518 38.462 7.57 0.00 45.25 3.20
4568 8253 7.338957 AGAGATCGCATTGATATATGTGAGAGA 59.661 37.037 7.57 0.00 45.25 3.10
4569 8254 8.009622 AGATCGCATTGATATATGTGAGAGAT 57.990 34.615 7.57 0.00 45.25 2.75
4570 8255 7.921745 AGATCGCATTGATATATGTGAGAGATG 59.078 37.037 7.57 0.00 45.25 2.90
4571 8256 6.335777 TCGCATTGATATATGTGAGAGATGG 58.664 40.000 0.00 0.00 39.43 3.51
4572 8257 5.006455 CGCATTGATATATGTGAGAGATGGC 59.994 44.000 0.00 0.00 38.07 4.40
4573 8258 5.878669 GCATTGATATATGTGAGAGATGGCA 59.121 40.000 0.00 0.00 0.00 4.92
4577 8262 8.929260 TTGATATATGTGAGAGATGGCATTTT 57.071 30.769 0.00 0.00 0.00 1.82
4578 8263 8.331730 TGATATATGTGAGAGATGGCATTTTG 57.668 34.615 0.00 0.00 0.00 2.44
4581 8266 5.733620 ATGTGAGAGATGGCATTTTGTTT 57.266 34.783 0.00 0.00 0.00 2.83
4583 8268 5.531634 TGTGAGAGATGGCATTTTGTTTTC 58.468 37.500 0.00 0.00 0.00 2.29
4593 8278 3.671164 GCATTTTGTTTTCATGGCATGGC 60.671 43.478 26.15 13.29 0.00 4.40
4608 8293 5.426504 TGGCATGGCATTTTTATTACCAAG 58.573 37.500 19.43 0.00 33.30 3.61
4609 8294 4.273235 GGCATGGCATTTTTATTACCAAGC 59.727 41.667 15.47 0.00 42.73 4.01
4610 8295 4.025813 GCATGGCATTTTTATTACCAAGCG 60.026 41.667 0.00 0.00 35.67 4.68
4611 8296 3.516615 TGGCATTTTTATTACCAAGCGC 58.483 40.909 0.00 0.00 0.00 5.92
4612 8297 3.056536 TGGCATTTTTATTACCAAGCGCA 60.057 39.130 11.47 0.00 0.00 6.09
4613 8298 4.119136 GGCATTTTTATTACCAAGCGCAT 58.881 39.130 11.47 0.00 0.00 4.73
4614 8299 4.209080 GGCATTTTTATTACCAAGCGCATC 59.791 41.667 11.47 0.00 0.00 3.91
4615 8300 5.043248 GCATTTTTATTACCAAGCGCATCT 58.957 37.500 11.47 0.00 0.00 2.90
4616 8301 5.173854 GCATTTTTATTACCAAGCGCATCTC 59.826 40.000 11.47 0.00 0.00 2.75
4617 8302 5.888691 TTTTTATTACCAAGCGCATCTCA 57.111 34.783 11.47 0.00 0.00 3.27
4618 8303 6.449635 TTTTTATTACCAAGCGCATCTCAT 57.550 33.333 11.47 0.00 0.00 2.90
4619 8304 6.449635 TTTTATTACCAAGCGCATCTCATT 57.550 33.333 11.47 0.00 0.00 2.57
4620 8305 6.449635 TTTATTACCAAGCGCATCTCATTT 57.550 33.333 11.47 0.00 0.00 2.32
4621 8306 4.989279 ATTACCAAGCGCATCTCATTTT 57.011 36.364 11.47 0.00 0.00 1.82
4622 8307 4.782019 TTACCAAGCGCATCTCATTTTT 57.218 36.364 11.47 0.00 0.00 1.94
4623 8308 5.888691 TTACCAAGCGCATCTCATTTTTA 57.111 34.783 11.47 0.00 0.00 1.52
4624 8309 4.989279 ACCAAGCGCATCTCATTTTTAT 57.011 36.364 11.47 0.00 0.00 1.40
4625 8310 5.329035 ACCAAGCGCATCTCATTTTTATT 57.671 34.783 11.47 0.00 0.00 1.40
4626 8311 6.449635 ACCAAGCGCATCTCATTTTTATTA 57.550 33.333 11.47 0.00 0.00 0.98
4627 8312 6.265577 ACCAAGCGCATCTCATTTTTATTAC 58.734 36.000 11.47 0.00 0.00 1.89
4628 8313 5.687285 CCAAGCGCATCTCATTTTTATTACC 59.313 40.000 11.47 0.00 0.00 2.85
4629 8314 6.264832 CAAGCGCATCTCATTTTTATTACCA 58.735 36.000 11.47 0.00 0.00 3.25
4630 8315 6.449635 AGCGCATCTCATTTTTATTACCAA 57.550 33.333 11.47 0.00 0.00 3.67
4631 8316 7.042797 AGCGCATCTCATTTTTATTACCAAT 57.957 32.000 11.47 0.00 0.00 3.16
4857 8752 6.892658 TGACATGGCAGTTTTATTAACAGT 57.107 33.333 0.00 0.00 0.00 3.55
4864 8759 6.601613 TGGCAGTTTTATTAACAGTAGGATGG 59.398 38.462 0.00 0.00 0.00 3.51
4877 8795 7.516198 ACAGTAGGATGGCATTTTCATTATC 57.484 36.000 0.00 0.00 0.00 1.75
4955 8899 8.186709 AGGATGGCATTTTTATTATTGAGAGG 57.813 34.615 0.00 0.00 0.00 3.69
4956 8900 8.006564 AGGATGGCATTTTTATTATTGAGAGGA 58.993 33.333 0.00 0.00 0.00 3.71
4957 8901 8.810041 GGATGGCATTTTTATTATTGAGAGGAT 58.190 33.333 0.00 0.00 0.00 3.24
4959 8903 7.954835 TGGCATTTTTATTATTGAGAGGATGG 58.045 34.615 0.00 0.00 0.00 3.51
4960 8904 7.564660 TGGCATTTTTATTATTGAGAGGATGGT 59.435 33.333 0.00 0.00 0.00 3.55
4962 8951 9.468532 GCATTTTTATTATTGAGAGGATGGTTC 57.531 33.333 0.00 0.00 0.00 3.62
5024 9080 9.617523 AGAGGATGGCATTTTTATTTTTAATGG 57.382 29.630 0.00 0.00 31.54 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.346244 GCAATTTCCATGACGCACAATG 59.654 45.455 0.00 0.00 0.00 2.82
81 82 6.521151 AGACTTTGAAGCCTCCATAATTTG 57.479 37.500 0.00 0.00 0.00 2.32
151 152 1.077787 ACATACGGGTGCCACATGG 60.078 57.895 0.00 0.00 38.53 3.66
245 306 6.580041 TCGTTCGTATTTCTAGTTCAGTGAAC 59.420 38.462 25.51 25.51 42.25 3.18
261 322 3.795101 GTCGGTTGATGAATCGTTCGTAT 59.205 43.478 0.00 0.00 36.99 3.06
306 950 2.351726 AGCCGTAGTGCGATTCATTTTC 59.648 45.455 0.81 0.00 44.77 2.29
347 991 1.612199 CCGCAACTAGGCCCACTTTAA 60.612 52.381 0.00 0.00 0.00 1.52
382 1028 2.735772 CCCTACCGATGCCTGTGCT 61.736 63.158 0.00 0.00 38.71 4.40
407 1068 1.314534 CCGCACCATTGATTGAGGCA 61.315 55.000 0.00 0.00 0.00 4.75
408 1069 1.031571 TCCGCACCATTGATTGAGGC 61.032 55.000 3.97 0.00 33.03 4.70
409 1070 1.462616 TTCCGCACCATTGATTGAGG 58.537 50.000 2.79 2.79 34.21 3.86
410 1071 3.129113 TCATTTCCGCACCATTGATTGAG 59.871 43.478 0.00 0.00 0.00 3.02
411 1072 3.087781 TCATTTCCGCACCATTGATTGA 58.912 40.909 0.00 0.00 0.00 2.57
475 1293 2.840753 GGGACTTGAGGGTGCCCAA 61.841 63.158 10.26 0.00 41.03 4.12
626 1444 1.597461 GACTCCTTGAACTCCGGGG 59.403 63.158 0.00 0.00 0.00 5.73
664 1645 0.036952 CACATCTCCAACGCTCACCT 60.037 55.000 0.00 0.00 0.00 4.00
668 1649 2.456119 CGGCACATCTCCAACGCTC 61.456 63.158 0.00 0.00 0.00 5.03
672 1653 2.109126 GGCTCGGCACATCTCCAAC 61.109 63.158 0.00 0.00 0.00 3.77
744 2486 1.379044 CCGGCAATGCTTCCTTCCT 60.379 57.895 4.82 0.00 0.00 3.36
822 4061 0.934901 CTGTCAGTGACACGGACACG 60.935 60.000 29.94 22.69 45.69 4.49
823 4062 0.102481 ACTGTCAGTGACACGGACAC 59.898 55.000 29.94 12.66 45.69 3.67
886 4125 1.702886 CTGGTTCACGAGCACTAGTG 58.297 55.000 18.93 18.93 37.51 2.74
889 4128 4.988065 GCTGGTTCACGAGCACTA 57.012 55.556 8.90 0.00 45.37 2.74
910 4157 2.512057 GAGGCTGCTCTGCTCTGC 60.512 66.667 0.00 0.00 0.00 4.26
911 4158 2.187424 GGAGGCTGCTCTGCTCTG 59.813 66.667 0.00 0.00 0.00 3.35
912 4159 3.082701 GGGAGGCTGCTCTGCTCT 61.083 66.667 5.84 0.00 0.00 4.09
913 4160 4.173924 GGGGAGGCTGCTCTGCTC 62.174 72.222 5.84 0.00 0.00 4.26
935 4186 0.041839 CTTCTGTCGTGTGCAAGTGC 60.042 55.000 0.00 0.00 42.50 4.40
936 4187 1.290203 ACTTCTGTCGTGTGCAAGTG 58.710 50.000 0.00 0.00 0.00 3.16
937 4188 2.100916 AGTACTTCTGTCGTGTGCAAGT 59.899 45.455 0.00 0.00 0.00 3.16
938 4189 2.726760 GAGTACTTCTGTCGTGTGCAAG 59.273 50.000 0.00 0.00 0.00 4.01
947 4215 3.284617 GAGAGGGAGGAGTACTTCTGTC 58.715 54.545 8.92 2.57 0.00 3.51
965 4233 0.703056 TTTGGTGGGGGAAAGGGAGA 60.703 55.000 0.00 0.00 0.00 3.71
1264 4569 1.687493 GGGTGTCCAGGAGGAGGAG 60.687 68.421 0.00 0.00 46.92 3.69
2091 5483 0.169009 GAAATGAAGGGAGCACGCAC 59.831 55.000 0.36 0.00 0.00 5.34
2094 5486 1.394917 CGAAGAAATGAAGGGAGCACG 59.605 52.381 0.00 0.00 0.00 5.34
2103 5495 2.677836 CGGGCTTGATCGAAGAAATGAA 59.322 45.455 8.52 0.00 43.58 2.57
2122 5514 3.543680 ACTGTAATCACCTGGAATCGG 57.456 47.619 0.00 0.00 0.00 4.18
2137 5529 5.600069 AGCTCATGAGGAATGTGATACTGTA 59.400 40.000 23.89 0.00 37.56 2.74
2143 5535 3.054582 ACACAGCTCATGAGGAATGTGAT 60.055 43.478 23.89 10.44 42.04 3.06
2149 5541 3.008266 TCATCAACACAGCTCATGAGGAA 59.992 43.478 23.89 0.39 30.60 3.36
2151 5543 2.937149 CTCATCAACACAGCTCATGAGG 59.063 50.000 23.89 10.87 37.76 3.86
2152 5544 3.617706 GTCTCATCAACACAGCTCATGAG 59.382 47.826 18.84 18.84 41.22 2.90
2153 5545 3.260128 AGTCTCATCAACACAGCTCATGA 59.740 43.478 0.00 0.00 0.00 3.07
2154 5546 3.597255 AGTCTCATCAACACAGCTCATG 58.403 45.455 0.00 0.00 0.00 3.07
2155 5547 3.369261 GGAGTCTCATCAACACAGCTCAT 60.369 47.826 1.47 0.00 0.00 2.90
2156 5548 2.028658 GGAGTCTCATCAACACAGCTCA 60.029 50.000 1.47 0.00 0.00 4.26
2191 5606 4.160252 GGGCCAAACACACATGAATTAGAT 59.840 41.667 4.39 0.00 0.00 1.98
2230 5645 1.336240 GGCATGCTCAAGTTGACAACC 60.336 52.381 18.92 7.94 0.00 3.77
2236 5651 5.124457 ACAAACTATAGGCATGCTCAAGTTG 59.876 40.000 18.92 14.69 0.00 3.16
2237 5652 5.256474 ACAAACTATAGGCATGCTCAAGTT 58.744 37.500 18.92 17.63 0.00 2.66
2238 5653 4.848357 ACAAACTATAGGCATGCTCAAGT 58.152 39.130 18.92 12.90 0.00 3.16
2243 5658 3.931907 TGGACAAACTATAGGCATGCT 57.068 42.857 18.92 6.26 0.00 3.79
2250 5666 7.759886 TCGAAGAGACATTTGGACAAACTATAG 59.240 37.037 0.00 0.00 32.51 1.31
2252 5668 6.464222 TCGAAGAGACATTTGGACAAACTAT 58.536 36.000 0.00 0.00 32.51 2.12
2278 5694 5.975693 TGGAAAACCGATAGCTTGAAATT 57.024 34.783 0.00 0.00 0.00 1.82
2286 5702 4.335315 TGACATGATTGGAAAACCGATAGC 59.665 41.667 0.00 0.00 0.00 2.97
2289 5705 3.129287 GCTGACATGATTGGAAAACCGAT 59.871 43.478 0.00 0.00 0.00 4.18
2291 5707 2.489329 AGCTGACATGATTGGAAAACCG 59.511 45.455 0.00 0.00 0.00 4.44
2308 5724 1.741706 CTATGACCAAGGCAACAGCTG 59.258 52.381 13.48 13.48 41.41 4.24
2313 5729 5.391312 AATTTGTCTATGACCAAGGCAAC 57.609 39.130 0.00 0.00 38.24 4.17
2353 5769 9.944376 TCAAAAGCTAAATCACTCATACTACTT 57.056 29.630 0.00 0.00 0.00 2.24
2380 5796 7.772757 AGGGAATATAGCTCTAAATATTGCTGC 59.227 37.037 14.44 0.00 36.90 5.25
2388 5804 6.153680 CGAGGACAGGGAATATAGCTCTAAAT 59.846 42.308 0.00 0.00 0.00 1.40
2400 5816 1.825474 CAGTGTACGAGGACAGGGAAT 59.175 52.381 0.00 0.00 0.00 3.01
2412 5828 5.975939 GGATTAACCTAAGCTACAGTGTACG 59.024 44.000 0.00 0.00 35.41 3.67
2441 5857 6.631016 TCATAACTGAGAATACGCTGACTTT 58.369 36.000 0.00 0.00 0.00 2.66
2534 5970 8.071177 ACTTTAGATCAAAGCTATTGCCAAAT 57.929 30.769 13.98 0.00 46.50 2.32
2566 6002 9.890629 ACTAGCAGTCAACTAATGATTCAATTA 57.109 29.630 0.00 0.00 40.97 1.40
2631 6067 9.541143 TTTTAGCCTGGAAAATTTACTTGAAAG 57.459 29.630 0.00 0.00 0.00 2.62
2872 6317 8.231692 TCATCAAGGTACAAGAATTTGAACAA 57.768 30.769 0.00 0.00 37.73 2.83
2903 6348 6.174049 ACAGACTTCTTACCTGAAAATAGGC 58.826 40.000 0.00 0.00 41.75 3.93
3084 6540 4.657814 ACCCTAAACATGTGAGTGGAAT 57.342 40.909 0.00 0.00 0.00 3.01
3085 6541 4.447138 AACCCTAAACATGTGAGTGGAA 57.553 40.909 0.00 0.00 0.00 3.53
3086 6542 4.447138 AAACCCTAAACATGTGAGTGGA 57.553 40.909 0.00 0.00 0.00 4.02
3087 6543 4.582656 TCAAAACCCTAAACATGTGAGTGG 59.417 41.667 0.00 6.56 0.00 4.00
3088 6544 5.766150 TCAAAACCCTAAACATGTGAGTG 57.234 39.130 0.00 0.00 0.00 3.51
3089 6545 6.976934 ATTCAAAACCCTAAACATGTGAGT 57.023 33.333 0.00 0.00 0.00 3.41
3090 6546 8.661352 AAAATTCAAAACCCTAAACATGTGAG 57.339 30.769 0.00 0.00 0.00 3.51
3091 6547 8.482128 AGAAAATTCAAAACCCTAAACATGTGA 58.518 29.630 0.00 0.00 0.00 3.58
3137 6593 4.554134 CGCAAGATCATAAAGTGCATGGAG 60.554 45.833 0.00 0.00 43.02 3.86
3238 6709 9.000018 GCTAACTTCAATAATGACGACATTTTC 58.000 33.333 17.76 0.00 43.17 2.29
3250 6724 8.297470 ACCAATCACATGCTAACTTCAATAAT 57.703 30.769 0.00 0.00 0.00 1.28
3265 6739 7.174946 CACTAACCAGAACTTAACCAATCACAT 59.825 37.037 0.00 0.00 0.00 3.21
3269 6743 7.360361 CAACACTAACCAGAACTTAACCAATC 58.640 38.462 0.00 0.00 0.00 2.67
3284 6760 2.572290 AGTTCCACTGCAACACTAACC 58.428 47.619 0.00 0.00 0.00 2.85
3365 6844 7.820648 AGGAACAAATTCAAGTAGCTAACATG 58.179 34.615 0.00 0.00 36.46 3.21
3531 7014 8.822805 AGTACAAAACTACTTCCAGATAATGGA 58.177 33.333 0.00 0.00 46.83 3.41
3534 7017 9.819267 GCTAGTACAAAACTACTTCCAGATAAT 57.181 33.333 0.00 0.00 39.80 1.28
3535 7018 7.972277 CGCTAGTACAAAACTACTTCCAGATAA 59.028 37.037 0.00 0.00 39.80 1.75
3536 7019 7.415989 CCGCTAGTACAAAACTACTTCCAGATA 60.416 40.741 0.00 0.00 39.80 1.98
3537 7020 6.331061 CGCTAGTACAAAACTACTTCCAGAT 58.669 40.000 0.00 0.00 39.80 2.90
3538 7021 5.336213 CCGCTAGTACAAAACTACTTCCAGA 60.336 44.000 0.00 0.00 39.80 3.86
3539 7022 4.863131 CCGCTAGTACAAAACTACTTCCAG 59.137 45.833 0.00 0.00 39.80 3.86
3540 7023 4.322198 CCCGCTAGTACAAAACTACTTCCA 60.322 45.833 0.00 0.00 39.80 3.53
3541 7024 4.179298 CCCGCTAGTACAAAACTACTTCC 58.821 47.826 0.00 0.00 39.80 3.46
3591 7082 6.809196 TCAAAACGATGTATTGCCCAATTTAC 59.191 34.615 0.00 0.00 32.50 2.01
3622 7113 3.719268 TGGACACTATGATGGCACTTT 57.281 42.857 0.00 0.00 0.00 2.66
3720 7215 5.683681 ACCAAAGCATGTCCTTTTCAAAAT 58.316 33.333 0.00 0.00 32.97 1.82
3835 7333 0.179037 ATCACCCATCACGCATCAGG 60.179 55.000 0.00 0.00 0.00 3.86
3857 7355 1.369091 CCTGCAAAATCCGAGTCCCG 61.369 60.000 0.00 0.00 38.18 5.14
3874 7372 3.334881 ACCCAAACATCTCCAGATTTCCT 59.665 43.478 0.00 0.00 31.21 3.36
3876 7374 5.728637 AAACCCAAACATCTCCAGATTTC 57.271 39.130 0.00 0.00 31.21 2.17
3937 7435 0.681887 TACGAAGGGATGAGCGTGGA 60.682 55.000 0.00 0.00 37.56 4.02
4008 7506 8.741603 TCATCAATTTGTCACATGTCTCATAT 57.258 30.769 0.00 0.00 0.00 1.78
4024 7522 3.440173 ACCGAAACGCTCATCATCAATTT 59.560 39.130 0.00 0.00 0.00 1.82
4153 7656 0.179004 TTGGCGATGAGGGTGTTTGT 60.179 50.000 0.00 0.00 0.00 2.83
4187 7690 2.751436 GCCTTGCGCCAAGATCCA 60.751 61.111 17.53 0.00 43.42 3.41
4235 7900 0.814010 GCCAGGAATCCGCGTACAAT 60.814 55.000 4.92 0.00 0.00 2.71
4244 7909 0.179097 GACGAGTCTGCCAGGAATCC 60.179 60.000 0.00 0.00 0.00 3.01
4316 7984 4.047125 CCTGTGCGGGGGTTCCAT 62.047 66.667 0.00 0.00 34.36 3.41
4523 8208 9.869844 CGATCTCTCAACAATAAAAATACCATC 57.130 33.333 0.00 0.00 0.00 3.51
4527 8212 9.722056 AATGCGATCTCTCAACAATAAAAATAC 57.278 29.630 0.00 0.00 0.00 1.89
4528 8213 9.720667 CAATGCGATCTCTCAACAATAAAAATA 57.279 29.630 0.00 0.00 0.00 1.40
4529 8214 8.461222 TCAATGCGATCTCTCAACAATAAAAAT 58.539 29.630 0.00 0.00 0.00 1.82
4530 8215 7.815641 TCAATGCGATCTCTCAACAATAAAAA 58.184 30.769 0.00 0.00 0.00 1.94
4531 8216 7.376435 TCAATGCGATCTCTCAACAATAAAA 57.624 32.000 0.00 0.00 0.00 1.52
4532 8217 6.983474 TCAATGCGATCTCTCAACAATAAA 57.017 33.333 0.00 0.00 0.00 1.40
4533 8218 8.837788 ATATCAATGCGATCTCTCAACAATAA 57.162 30.769 0.00 0.00 35.39 1.40
4535 8220 8.880750 CATATATCAATGCGATCTCTCAACAAT 58.119 33.333 0.00 0.00 35.39 2.71
4536 8221 7.874528 ACATATATCAATGCGATCTCTCAACAA 59.125 33.333 0.00 0.00 35.39 2.83
4537 8222 7.330208 CACATATATCAATGCGATCTCTCAACA 59.670 37.037 0.00 0.00 35.39 3.33
4538 8223 7.543520 TCACATATATCAATGCGATCTCTCAAC 59.456 37.037 0.00 0.00 35.39 3.18
4539 8224 7.605449 TCACATATATCAATGCGATCTCTCAA 58.395 34.615 0.00 0.00 35.39 3.02
4540 8225 7.121759 TCTCACATATATCAATGCGATCTCTCA 59.878 37.037 0.00 0.00 35.39 3.27
4541 8226 7.479150 TCTCACATATATCAATGCGATCTCTC 58.521 38.462 0.00 0.00 35.39 3.20
4542 8227 7.338957 TCTCTCACATATATCAATGCGATCTCT 59.661 37.037 0.00 0.00 35.39 3.10
4543 8228 7.479150 TCTCTCACATATATCAATGCGATCTC 58.521 38.462 0.00 0.00 35.39 2.75
4544 8229 7.401955 TCTCTCACATATATCAATGCGATCT 57.598 36.000 0.00 0.00 35.39 2.75
4545 8230 7.169476 CCATCTCTCACATATATCAATGCGATC 59.831 40.741 0.00 0.00 35.39 3.69
4546 8231 6.985059 CCATCTCTCACATATATCAATGCGAT 59.015 38.462 0.00 0.00 38.21 4.58
4547 8232 6.335777 CCATCTCTCACATATATCAATGCGA 58.664 40.000 0.00 0.00 0.00 5.10
4548 8233 5.006455 GCCATCTCTCACATATATCAATGCG 59.994 44.000 0.00 0.00 0.00 4.73
4549 8234 5.878669 TGCCATCTCTCACATATATCAATGC 59.121 40.000 0.00 0.00 0.00 3.56
4550 8235 8.507524 AATGCCATCTCTCACATATATCAATG 57.492 34.615 0.00 0.00 0.00 2.82
4551 8236 9.529823 AAAATGCCATCTCTCACATATATCAAT 57.470 29.630 0.00 0.00 0.00 2.57
4552 8237 8.789762 CAAAATGCCATCTCTCACATATATCAA 58.210 33.333 0.00 0.00 0.00 2.57
4553 8238 7.940688 ACAAAATGCCATCTCTCACATATATCA 59.059 33.333 0.00 0.00 0.00 2.15
4554 8239 8.332996 ACAAAATGCCATCTCTCACATATATC 57.667 34.615 0.00 0.00 0.00 1.63
4555 8240 8.701908 AACAAAATGCCATCTCTCACATATAT 57.298 30.769 0.00 0.00 0.00 0.86
4556 8241 8.523915 AAACAAAATGCCATCTCTCACATATA 57.476 30.769 0.00 0.00 0.00 0.86
4557 8242 7.414222 AAACAAAATGCCATCTCTCACATAT 57.586 32.000 0.00 0.00 0.00 1.78
4558 8243 6.839124 AAACAAAATGCCATCTCTCACATA 57.161 33.333 0.00 0.00 0.00 2.29
4559 8244 5.733620 AAACAAAATGCCATCTCTCACAT 57.266 34.783 0.00 0.00 0.00 3.21
4560 8245 5.068855 TGAAAACAAAATGCCATCTCTCACA 59.931 36.000 0.00 0.00 0.00 3.58
4561 8246 5.531634 TGAAAACAAAATGCCATCTCTCAC 58.468 37.500 0.00 0.00 0.00 3.51
4562 8247 5.787953 TGAAAACAAAATGCCATCTCTCA 57.212 34.783 0.00 0.00 0.00 3.27
4563 8248 5.579511 CCATGAAAACAAAATGCCATCTCTC 59.420 40.000 0.00 0.00 0.00 3.20
4564 8249 5.484715 CCATGAAAACAAAATGCCATCTCT 58.515 37.500 0.00 0.00 0.00 3.10
4565 8250 4.093850 GCCATGAAAACAAAATGCCATCTC 59.906 41.667 0.00 0.00 0.00 2.75
4566 8251 4.004982 GCCATGAAAACAAAATGCCATCT 58.995 39.130 0.00 0.00 0.00 2.90
4567 8252 3.752222 TGCCATGAAAACAAAATGCCATC 59.248 39.130 0.00 0.00 0.00 3.51
4568 8253 3.752665 TGCCATGAAAACAAAATGCCAT 58.247 36.364 0.00 0.00 0.00 4.40
4569 8254 3.204306 TGCCATGAAAACAAAATGCCA 57.796 38.095 0.00 0.00 0.00 4.92
4570 8255 3.119779 CCATGCCATGAAAACAAAATGCC 60.120 43.478 6.18 0.00 0.00 4.40
4571 8256 3.671164 GCCATGCCATGAAAACAAAATGC 60.671 43.478 6.18 0.00 0.00 3.56
4572 8257 3.502595 TGCCATGCCATGAAAACAAAATG 59.497 39.130 6.18 0.00 0.00 2.32
4573 8258 3.752665 TGCCATGCCATGAAAACAAAAT 58.247 36.364 6.18 0.00 0.00 1.82
4577 8262 3.420300 AAATGCCATGCCATGAAAACA 57.580 38.095 6.18 0.00 0.00 2.83
4578 8263 4.769859 AAAAATGCCATGCCATGAAAAC 57.230 36.364 6.18 0.00 0.00 2.43
4581 8266 6.054295 GGTAATAAAAATGCCATGCCATGAA 58.946 36.000 6.18 0.00 0.00 2.57
4583 8268 5.366460 TGGTAATAAAAATGCCATGCCATG 58.634 37.500 0.00 0.00 0.00 3.66
4593 8278 6.264832 TGAGATGCGCTTGGTAATAAAAATG 58.735 36.000 9.73 0.00 0.00 2.32
4608 8293 7.538678 CCTATTGGTAATAAAAATGAGATGCGC 59.461 37.037 0.00 0.00 0.00 6.09
4609 8294 8.783093 TCCTATTGGTAATAAAAATGAGATGCG 58.217 33.333 0.00 0.00 34.23 4.73
4729 8414 7.122138 TGCCATGCCATGAGAAATAAAAATA 57.878 32.000 6.18 0.00 0.00 1.40
4857 8752 6.768483 TCTCGATAATGAAAATGCCATCCTA 58.232 36.000 0.00 0.00 0.00 2.94
4864 8759 5.618640 GCCATCCTCTCGATAATGAAAATGC 60.619 44.000 0.00 0.00 0.00 3.56
4871 8789 5.954296 AAAATGCCATCCTCTCGATAATG 57.046 39.130 0.00 0.00 0.00 1.90
4989 9001 6.855763 AAAATGCCATCCTCTGAAACATTA 57.144 33.333 0.00 0.00 0.00 1.90
4990 9002 5.750352 AAAATGCCATCCTCTGAAACATT 57.250 34.783 0.00 0.00 0.00 2.71
4991 9003 5.750352 AAAAATGCCATCCTCTGAAACAT 57.250 34.783 0.00 0.00 0.00 2.71
4992 9004 6.855763 ATAAAAATGCCATCCTCTGAAACA 57.144 33.333 0.00 0.00 0.00 2.83
4993 9005 8.552083 AAAATAAAAATGCCATCCTCTGAAAC 57.448 30.769 0.00 0.00 0.00 2.78
5000 9012 7.833183 TGCCATTAAAAATAAAAATGCCATCCT 59.167 29.630 0.00 0.00 30.81 3.24
5001 9013 7.994194 TGCCATTAAAAATAAAAATGCCATCC 58.006 30.769 0.00 0.00 30.81 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.