Multiple sequence alignment - TraesCS1D01G297200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G297200 chr1D 100.000 3306 0 0 343 3648 395560399 395557094 0.000000e+00 6106.0
1 TraesCS1D01G297200 chr1D 94.030 268 10 5 351 614 53164465 53164730 5.670000e-108 401.0
2 TraesCS1D01G297200 chr1D 100.000 122 0 0 1 122 395560741 395560620 3.670000e-55 226.0
3 TraesCS1D01G297200 chr1D 95.902 122 4 1 1 122 452239657 452239537 2.870000e-46 196.0
4 TraesCS1D01G297200 chr1B 94.060 1431 43 10 2230 3648 526347584 526346184 0.000000e+00 2134.0
5 TraesCS1D01G297200 chr1B 95.536 1277 35 8 977 2231 526349076 526347800 0.000000e+00 2023.0
6 TraesCS1D01G297200 chr1A 95.330 1349 50 7 2127 3471 489600254 489598915 0.000000e+00 2130.0
7 TraesCS1D01G297200 chr1A 97.244 1125 31 0 971 2095 489601377 489600253 0.000000e+00 1906.0
8 TraesCS1D01G297200 chr1A 89.116 294 15 3 3355 3648 489598918 489598642 2.080000e-92 350.0
9 TraesCS1D01G297200 chr7D 86.287 1422 91 39 1131 2519 573898037 573899387 0.000000e+00 1450.0
10 TraesCS1D01G297200 chr7D 82.796 651 72 17 2547 3170 573899385 573900022 2.480000e-151 545.0
11 TraesCS1D01G297200 chr7D 89.766 342 31 3 3209 3550 573900027 573900364 5.590000e-118 435.0
12 TraesCS1D01G297200 chr7D 93.680 269 14 3 351 616 420911911 420911643 2.040000e-107 399.0
13 TraesCS1D01G297200 chr7D 86.243 378 21 7 479 825 553073078 553073455 7.390000e-102 381.0
14 TraesCS1D01G297200 chr7D 77.291 502 79 23 1138 1635 573909609 573910079 2.790000e-66 263.0
15 TraesCS1D01G297200 chr7D 95.902 122 5 0 1 122 434163477 434163356 7.990000e-47 198.0
16 TraesCS1D01G297200 chr7D 95.902 122 4 1 1 122 182331295 182331175 2.870000e-46 196.0
17 TraesCS1D01G297200 chr7D 95.902 122 4 1 1 122 442279106 442279226 2.870000e-46 196.0
18 TraesCS1D01G297200 chr7D 100.000 34 0 0 1978 2011 573905557 573905590 3.040000e-06 63.9
19 TraesCS1D01G297200 chr7B 84.353 1553 105 51 976 2481 632684489 632685950 0.000000e+00 1395.0
20 TraesCS1D01G297200 chr7B 88.889 342 33 4 3209 3550 632687936 632688272 2.030000e-112 416.0
21 TraesCS1D01G297200 chr7B 81.641 512 73 17 1131 1635 20035503 20035006 4.390000e-109 405.0
22 TraesCS1D01G297200 chr7B 79.880 502 82 16 1138 1635 632946977 632946491 2.080000e-92 350.0
23 TraesCS1D01G297200 chr7B 83.333 204 20 9 2547 2737 632685977 632686179 3.740000e-40 176.0
24 TraesCS1D01G297200 chr7B 87.395 119 15 0 1791 1909 19975506 19975388 1.770000e-28 137.0
25 TraesCS1D01G297200 chr7B 80.808 99 18 1 2133 2231 19959619 19959522 3.910000e-10 76.8
26 TraesCS1D01G297200 chr7B 100.000 34 0 0 1978 2011 632688538 632688571 3.040000e-06 63.9
27 TraesCS1D01G297200 chr3B 83.369 926 98 32 1131 2021 733574009 733574913 0.000000e+00 806.0
28 TraesCS1D01G297200 chr3B 83.222 900 114 24 1152 2023 733628624 733629514 0.000000e+00 791.0
29 TraesCS1D01G297200 chr3B 81.905 525 67 19 1131 1635 733562526 733563042 5.630000e-113 418.0
30 TraesCS1D01G297200 chr3B 77.622 286 43 14 2137 2407 733601782 733602061 1.750000e-33 154.0
31 TraesCS1D01G297200 chr3B 84.507 71 9 2 2127 2196 733575029 733575098 6.540000e-08 69.4
32 TraesCS1D01G297200 chr3D 82.948 909 105 30 1152 2023 552782381 552783276 0.000000e+00 774.0
33 TraesCS1D01G297200 chr3D 83.333 504 69 14 1131 1626 552755135 552755631 5.550000e-123 451.0
34 TraesCS1D01G297200 chr3D 88.701 354 29 7 479 825 601085605 601085954 4.360000e-114 422.0
35 TraesCS1D01G297200 chr3D 96.748 123 3 1 1 122 587320291 587320413 1.720000e-48 204.0
36 TraesCS1D01G297200 chr3D 78.157 293 39 15 2131 2404 552771168 552771454 2.910000e-36 163.0
37 TraesCS1D01G297200 chr3A 81.930 891 114 21 1151 2023 689111918 689112779 0.000000e+00 710.0
38 TraesCS1D01G297200 chr3A 82.828 495 72 12 1131 1614 689007194 689007686 7.240000e-117 431.0
39 TraesCS1D01G297200 chr3A 92.989 271 13 5 351 617 79183303 79183571 1.230000e-104 390.0
40 TraesCS1D01G297200 chr3A 79.322 295 37 14 2131 2407 689074199 689074487 6.220000e-43 185.0
41 TraesCS1D01G297200 chr2D 88.400 500 38 12 343 825 2503576 2504072 5.250000e-163 584.0
42 TraesCS1D01G297200 chr2D 84.288 541 61 16 1124 1641 488872055 488872594 1.170000e-139 507.0
43 TraesCS1D01G297200 chr2D 87.252 353 29 10 479 825 36547557 36547899 4.420000e-104 388.0
44 TraesCS1D01G297200 chr2D 77.260 708 107 16 1204 1869 489009828 489009133 2.070000e-97 366.0
45 TraesCS1D01G297200 chr2D 85.556 270 30 5 559 825 564924682 564924419 1.290000e-69 274.0
46 TraesCS1D01G297200 chr2D 86.765 204 20 2 1713 1909 488872720 488872923 1.710000e-53 220.0
47 TraesCS1D01G297200 chr2D 95.868 121 3 2 1 121 131315789 131315907 1.030000e-45 195.0
48 TraesCS1D01G297200 chr2D 81.287 171 32 0 1465 1635 50747451 50747621 4.910000e-29 139.0
49 TraesCS1D01G297200 chr2D 77.128 188 14 15 2128 2289 488994434 488994250 8.400000e-12 82.4
50 TraesCS1D01G297200 chr5D 85.996 507 31 19 351 825 390366206 390365708 1.170000e-139 507.0
51 TraesCS1D01G297200 chr5D 95.902 122 3 2 1 121 417618600 417618480 2.870000e-46 196.0
52 TraesCS1D01G297200 chr5D 90.789 76 7 0 3358 3433 333381730 333381655 6.440000e-18 102.0
53 TraesCS1D01G297200 chr4D 86.667 480 37 13 356 825 29000810 29001272 1.170000e-139 507.0
54 TraesCS1D01G297200 chr4D 90.816 196 13 3 2741 2932 131266750 131266944 1.300000e-64 257.0
55 TraesCS1D01G297200 chr4D 91.892 74 6 0 3358 3431 131267262 131267335 1.790000e-18 104.0
56 TraesCS1D01G297200 chr5A 93.165 278 15 4 343 616 46611381 46611658 4.390000e-109 405.0
57 TraesCS1D01G297200 chr5A 85.372 376 20 6 485 825 259075271 259075646 1.250000e-94 357.0
58 TraesCS1D01G297200 chr6D 92.937 269 15 4 351 616 454955694 454955427 4.420000e-104 388.0
59 TraesCS1D01G297200 chr6D 95.902 122 4 1 1 122 377837106 377837226 2.870000e-46 196.0
60 TraesCS1D01G297200 chr2B 76.726 782 127 24 1145 1881 759274385 759273614 5.710000e-103 385.0
61 TraesCS1D01G297200 chr2B 83.117 154 26 0 1740 1893 759301414 759301261 1.370000e-29 141.0
62 TraesCS1D01G297200 chr2B 83.582 67 9 2 2101 2165 759273376 759273310 1.090000e-05 62.1
63 TraesCS1D01G297200 chrUn 80.745 483 63 16 351 826 33334462 33334921 2.080000e-92 350.0
64 TraesCS1D01G297200 chrUn 80.579 484 60 17 351 826 331160703 331160246 3.490000e-90 342.0
65 TraesCS1D01G297200 chrUn 95.902 122 4 1 1 122 92816397 92816277 2.870000e-46 196.0
66 TraesCS1D01G297200 chr4A 88.832 197 17 3 2741 2933 706852548 706852353 1.690000e-58 237.0
67 TraesCS1D01G297200 chr4A 86.992 123 13 2 3211 3330 706852152 706852030 6.350000e-28 135.0
68 TraesCS1D01G297200 chr6B 94.118 51 2 1 3011 3061 252551544 252551495 3.910000e-10 76.8
69 TraesCS1D01G297200 chr2A 80.808 99 18 1 2133 2231 619560304 619560401 3.910000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G297200 chr1D 395557094 395560741 3647 True 3166.000 6106 100.000000 1 3648 2 chr1D.!!$R2 3647
1 TraesCS1D01G297200 chr1B 526346184 526349076 2892 True 2078.500 2134 94.798000 977 3648 2 chr1B.!!$R1 2671
2 TraesCS1D01G297200 chr1A 489598642 489601377 2735 True 1462.000 2130 93.896667 971 3648 3 chr1A.!!$R1 2677
3 TraesCS1D01G297200 chr7D 573898037 573900364 2327 False 810.000 1450 86.283000 1131 3550 3 chr7D.!!$F5 2419
4 TraesCS1D01G297200 chr7B 632684489 632688571 4082 False 512.725 1395 89.143750 976 3550 4 chr7B.!!$F1 2574
5 TraesCS1D01G297200 chr3B 733628624 733629514 890 False 791.000 791 83.222000 1152 2023 1 chr3B.!!$F3 871
6 TraesCS1D01G297200 chr3B 733574009 733575098 1089 False 437.700 806 83.938000 1131 2196 2 chr3B.!!$F4 1065
7 TraesCS1D01G297200 chr3B 733562526 733563042 516 False 418.000 418 81.905000 1131 1635 1 chr3B.!!$F1 504
8 TraesCS1D01G297200 chr3D 552782381 552783276 895 False 774.000 774 82.948000 1152 2023 1 chr3D.!!$F3 871
9 TraesCS1D01G297200 chr3A 689111918 689112779 861 False 710.000 710 81.930000 1151 2023 1 chr3A.!!$F4 872
10 TraesCS1D01G297200 chr2D 489009133 489009828 695 True 366.000 366 77.260000 1204 1869 1 chr2D.!!$R2 665
11 TraesCS1D01G297200 chr2D 488872055 488872923 868 False 363.500 507 85.526500 1124 1909 2 chr2D.!!$F5 785
12 TraesCS1D01G297200 chr2B 759273310 759274385 1075 True 223.550 385 80.154000 1145 2165 2 chr2B.!!$R2 1020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 948 0.033503 TACAGGAGCTCGGGATCACA 60.034 55.0 1.57 0.0 0.0 3.58 F
952 953 0.037790 GAGCTCGGGATCACATAGGC 60.038 60.0 0.00 0.0 0.0 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2605 3139 1.271543 TGGTCAATGCTTCCAGTCCAG 60.272 52.381 0.0 0.0 0.0 3.86 R
2773 4643 2.428530 AGCATAGATGAACAGAGCGACA 59.571 45.455 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.514573 AAAAAGACAGAAAACGCGTATTTTT 57.485 28.000 14.46 10.09 38.51 1.94
33 34 6.727569 AAAGACAGAAAACGCGTATTTTTC 57.272 33.333 21.51 21.51 41.40 2.29
34 35 4.779987 AGACAGAAAACGCGTATTTTTCC 58.220 39.130 24.01 13.45 41.84 3.13
35 36 4.514066 AGACAGAAAACGCGTATTTTTCCT 59.486 37.500 24.01 15.01 41.84 3.36
36 37 5.008316 AGACAGAAAACGCGTATTTTTCCTT 59.992 36.000 24.01 15.01 41.84 3.36
37 38 5.584442 ACAGAAAACGCGTATTTTTCCTTT 58.416 33.333 24.01 14.32 41.84 3.11
38 39 6.037726 ACAGAAAACGCGTATTTTTCCTTTT 58.962 32.000 24.01 13.69 41.84 2.27
39 40 6.197655 ACAGAAAACGCGTATTTTTCCTTTTC 59.802 34.615 24.01 19.90 41.84 2.29
40 41 5.397240 AGAAAACGCGTATTTTTCCTTTTCG 59.603 36.000 24.01 0.00 41.84 3.46
41 42 4.471157 AACGCGTATTTTTCCTTTTCGA 57.529 36.364 14.46 0.00 0.00 3.71
42 43 4.471157 ACGCGTATTTTTCCTTTTCGAA 57.529 36.364 11.67 0.00 0.00 3.71
43 44 4.846509 ACGCGTATTTTTCCTTTTCGAAA 58.153 34.783 11.67 6.47 0.00 3.46
44 45 4.907582 ACGCGTATTTTTCCTTTTCGAAAG 59.092 37.500 11.67 5.63 33.46 2.62
45 46 5.141568 CGCGTATTTTTCCTTTTCGAAAGA 58.858 37.500 10.98 3.17 33.46 2.52
46 47 5.280678 CGCGTATTTTTCCTTTTCGAAAGAG 59.719 40.000 10.98 11.01 43.69 2.85
47 48 5.567915 GCGTATTTTTCCTTTTCGAAAGAGG 59.432 40.000 22.67 22.67 43.69 3.69
48 49 5.567915 CGTATTTTTCCTTTTCGAAAGAGGC 59.432 40.000 23.34 12.97 43.69 4.70
49 50 4.993029 TTTTTCCTTTTCGAAAGAGGCA 57.007 36.364 23.34 15.81 43.69 4.75
50 51 3.982576 TTTCCTTTTCGAAAGAGGCAC 57.017 42.857 23.34 0.00 43.69 5.01
51 52 1.508632 TCCTTTTCGAAAGAGGCACG 58.491 50.000 23.34 9.35 43.69 5.34
52 53 0.110192 CCTTTTCGAAAGAGGCACGC 60.110 55.000 19.33 0.00 43.69 5.34
53 54 0.110192 CTTTTCGAAAGAGGCACGCC 60.110 55.000 10.98 0.00 43.69 5.68
54 55 1.512156 TTTTCGAAAGAGGCACGCCC 61.512 55.000 10.98 0.00 43.69 6.13
55 56 4.735132 TCGAAAGAGGCACGCCCG 62.735 66.667 3.95 0.59 39.21 6.13
107 108 2.018717 CGAAAGCAAAACCGTGACTC 57.981 50.000 0.00 0.00 0.00 3.36
108 109 1.597663 CGAAAGCAAAACCGTGACTCT 59.402 47.619 0.00 0.00 0.00 3.24
109 110 2.348591 CGAAAGCAAAACCGTGACTCTC 60.349 50.000 0.00 0.00 0.00 3.20
110 111 1.217882 AAGCAAAACCGTGACTCTCG 58.782 50.000 0.00 0.00 0.00 4.04
111 112 1.204312 GCAAAACCGTGACTCTCGC 59.796 57.895 0.00 0.00 0.00 5.03
121 122 3.854286 GTGACTCTCGCGAAAGAAAAA 57.146 42.857 17.91 0.00 0.00 1.94
365 366 5.873179 ACGCATATTTTTCCTTTTCGAGA 57.127 34.783 0.00 0.00 0.00 4.04
366 367 5.869350 ACGCATATTTTTCCTTTTCGAGAG 58.131 37.500 0.00 0.00 0.00 3.20
367 368 5.163754 ACGCATATTTTTCCTTTTCGAGAGG 60.164 40.000 9.93 9.93 35.53 3.69
368 369 5.037385 GCATATTTTTCCTTTTCGAGAGGC 58.963 41.667 11.07 0.00 34.17 4.70
369 370 5.393027 GCATATTTTTCCTTTTCGAGAGGCA 60.393 40.000 11.07 0.00 34.17 4.75
370 371 3.982576 TTTTTCCTTTTCGAGAGGCAC 57.017 42.857 11.07 0.00 34.17 5.01
371 372 1.508632 TTTCCTTTTCGAGAGGCACG 58.491 50.000 11.07 0.00 34.17 5.34
372 373 0.320421 TTCCTTTTCGAGAGGCACGG 60.320 55.000 11.07 0.00 34.17 4.94
373 374 2.391389 CCTTTTCGAGAGGCACGGC 61.391 63.158 4.24 0.00 0.00 5.68
388 389 4.373116 GGCCGTGCCTCTCGTCAA 62.373 66.667 7.58 0.00 46.69 3.18
389 390 2.357034 GCCGTGCCTCTCGTCAAA 60.357 61.111 0.00 0.00 0.00 2.69
390 391 2.383527 GCCGTGCCTCTCGTCAAAG 61.384 63.158 0.00 0.00 0.00 2.77
391 392 2.383527 CCGTGCCTCTCGTCAAAGC 61.384 63.158 0.00 0.00 0.00 3.51
392 393 1.664649 CGTGCCTCTCGTCAAAGCA 60.665 57.895 0.00 0.00 0.00 3.91
393 394 1.862806 GTGCCTCTCGTCAAAGCAC 59.137 57.895 0.00 0.00 45.99 4.40
394 395 1.445518 TGCCTCTCGTCAAAGCACA 59.554 52.632 0.00 0.00 0.00 4.57
395 396 0.179059 TGCCTCTCGTCAAAGCACAA 60.179 50.000 0.00 0.00 0.00 3.33
396 397 0.235926 GCCTCTCGTCAAAGCACAAC 59.764 55.000 0.00 0.00 0.00 3.32
397 398 0.868406 CCTCTCGTCAAAGCACAACC 59.132 55.000 0.00 0.00 0.00 3.77
398 399 0.508641 CTCTCGTCAAAGCACAACCG 59.491 55.000 0.00 0.00 0.00 4.44
399 400 0.179094 TCTCGTCAAAGCACAACCGT 60.179 50.000 0.00 0.00 0.00 4.83
400 401 0.042188 CTCGTCAAAGCACAACCGTG 60.042 55.000 0.00 0.00 46.56 4.94
408 409 3.414700 CACAACCGTGCCTCTCGC 61.415 66.667 0.00 0.00 36.06 5.03
425 426 4.914291 CGGAAGCAAAACCGTGAC 57.086 55.556 0.00 0.00 43.53 3.67
426 427 2.317230 CGGAAGCAAAACCGTGACT 58.683 52.632 0.00 0.00 43.53 3.41
427 428 0.234884 CGGAAGCAAAACCGTGACTC 59.765 55.000 0.00 0.00 43.53 3.36
428 429 1.594331 GGAAGCAAAACCGTGACTCT 58.406 50.000 0.00 0.00 0.00 3.24
429 430 1.531578 GGAAGCAAAACCGTGACTCTC 59.468 52.381 0.00 0.00 0.00 3.20
430 431 1.192534 GAAGCAAAACCGTGACTCTCG 59.807 52.381 0.00 0.00 0.00 4.04
431 432 1.204312 GCAAAACCGTGACTCTCGC 59.796 57.895 0.00 0.00 0.00 5.03
441 442 3.854286 GTGACTCTCGCGAAAGAAAAA 57.146 42.857 17.91 0.00 0.00 1.94
461 462 4.975921 AAAAACAGAAAACGCGTTTTGT 57.024 31.818 44.12 38.74 42.26 2.83
462 463 4.975921 AAAACAGAAAACGCGTTTTGTT 57.024 31.818 44.12 38.00 42.26 2.83
463 464 4.975921 AAACAGAAAACGCGTTTTGTTT 57.024 31.818 44.12 40.16 42.26 2.83
465 466 4.975921 ACAGAAAACGCGTTTTGTTTTT 57.024 31.818 44.12 27.11 46.40 1.94
466 467 4.936974 ACAGAAAACGCGTTTTGTTTTTC 58.063 34.783 44.12 31.24 46.40 2.29
467 468 4.143284 ACAGAAAACGCGTTTTGTTTTTCC 60.143 37.500 44.12 30.00 46.40 3.13
468 469 4.090786 CAGAAAACGCGTTTTGTTTTTCCT 59.909 37.500 44.12 31.41 46.40 3.36
469 470 4.687018 AGAAAACGCGTTTTGTTTTTCCTT 59.313 33.333 44.12 23.41 46.40 3.36
470 471 4.994220 AAACGCGTTTTGTTTTTCCTTT 57.006 31.818 30.36 4.69 36.15 3.11
471 472 4.571375 AACGCGTTTTGTTTTTCCTTTC 57.429 36.364 20.79 0.00 0.00 2.62
472 473 2.924926 ACGCGTTTTGTTTTTCCTTTCC 59.075 40.909 5.58 0.00 0.00 3.13
473 474 2.035259 CGCGTTTTGTTTTTCCTTTCCG 60.035 45.455 0.00 0.00 0.00 4.30
474 475 3.180613 GCGTTTTGTTTTTCCTTTCCGA 58.819 40.909 0.00 0.00 0.00 4.55
475 476 3.242016 GCGTTTTGTTTTTCCTTTCCGAG 59.758 43.478 0.00 0.00 0.00 4.63
476 477 4.664188 CGTTTTGTTTTTCCTTTCCGAGA 58.336 39.130 0.00 0.00 0.00 4.04
477 478 4.733405 CGTTTTGTTTTTCCTTTCCGAGAG 59.267 41.667 0.00 0.00 0.00 3.20
502 503 2.561885 CGTGACTCTCGCGGAAGT 59.438 61.111 6.13 10.41 45.61 3.01
503 504 1.792301 CGTGACTCTCGCGGAAGTA 59.208 57.895 6.13 0.00 45.61 2.24
504 505 0.167470 CGTGACTCTCGCGGAAGTAA 59.833 55.000 6.13 0.00 45.61 2.24
505 506 1.400629 CGTGACTCTCGCGGAAGTAAA 60.401 52.381 6.13 0.00 45.61 2.01
506 507 2.669364 GTGACTCTCGCGGAAGTAAAA 58.331 47.619 6.13 0.00 0.00 1.52
507 508 2.407696 GTGACTCTCGCGGAAGTAAAAC 59.592 50.000 6.13 6.20 0.00 2.43
508 509 1.991264 GACTCTCGCGGAAGTAAAACC 59.009 52.381 6.13 0.00 0.00 3.27
516 517 3.022607 CGGAAGTAAAACCGTGACTCT 57.977 47.619 0.00 0.00 43.53 3.24
517 518 2.985139 CGGAAGTAAAACCGTGACTCTC 59.015 50.000 0.00 0.00 43.53 3.20
518 519 2.985139 GGAAGTAAAACCGTGACTCTCG 59.015 50.000 0.00 0.00 0.00 4.04
519 520 2.061740 AGTAAAACCGTGACTCTCGC 57.938 50.000 0.00 0.00 0.00 5.03
529 530 3.854286 GTGACTCTCGCGAAAGAAAAA 57.146 42.857 17.91 0.00 0.00 1.94
584 585 3.506096 CGGCCGTGACTCTCGCTA 61.506 66.667 19.50 0.00 0.00 4.26
585 586 2.882876 GGCCGTGACTCTCGCTAA 59.117 61.111 0.00 0.00 0.00 3.09
586 587 1.214589 GGCCGTGACTCTCGCTAAA 59.785 57.895 0.00 0.00 0.00 1.85
587 588 0.179108 GGCCGTGACTCTCGCTAAAT 60.179 55.000 0.00 0.00 0.00 1.40
588 589 1.201343 GCCGTGACTCTCGCTAAATC 58.799 55.000 0.00 0.00 0.00 2.17
589 590 1.469251 GCCGTGACTCTCGCTAAATCA 60.469 52.381 0.00 0.00 0.00 2.57
590 591 2.186076 CCGTGACTCTCGCTAAATCAC 58.814 52.381 0.00 0.00 37.02 3.06
591 592 2.415491 CCGTGACTCTCGCTAAATCACA 60.415 50.000 0.00 0.00 39.72 3.58
592 593 3.242518 CGTGACTCTCGCTAAATCACAA 58.757 45.455 0.00 0.00 39.72 3.33
593 594 3.059570 CGTGACTCTCGCTAAATCACAAC 59.940 47.826 0.00 0.00 39.72 3.32
594 595 3.368236 GTGACTCTCGCTAAATCACAACC 59.632 47.826 0.00 0.00 39.57 3.77
595 596 2.599082 GACTCTCGCTAAATCACAACCG 59.401 50.000 0.00 0.00 0.00 4.44
596 597 2.029290 ACTCTCGCTAAATCACAACCGT 60.029 45.455 0.00 0.00 0.00 4.83
597 598 2.333926 TCTCGCTAAATCACAACCGTG 58.666 47.619 0.00 0.00 45.08 4.94
598 599 0.793861 TCGCTAAATCACAACCGTGC 59.206 50.000 0.00 0.00 43.28 5.34
599 600 0.179200 CGCTAAATCACAACCGTGCC 60.179 55.000 0.00 0.00 43.28 5.01
600 601 1.165270 GCTAAATCACAACCGTGCCT 58.835 50.000 0.00 0.00 43.28 4.75
601 602 1.130561 GCTAAATCACAACCGTGCCTC 59.869 52.381 0.00 0.00 43.28 4.70
602 603 2.699954 CTAAATCACAACCGTGCCTCT 58.300 47.619 0.00 0.00 43.28 3.69
603 604 1.523758 AAATCACAACCGTGCCTCTC 58.476 50.000 0.00 0.00 43.28 3.20
604 605 0.670546 AATCACAACCGTGCCTCTCG 60.671 55.000 0.00 0.00 43.28 4.04
605 606 3.414700 CACAACCGTGCCTCTCGC 61.415 66.667 0.00 0.00 36.06 5.03
612 613 4.261888 GTGCCTCTCGCGAAAGAA 57.738 55.556 11.91 0.00 42.08 2.52
613 614 2.528797 GTGCCTCTCGCGAAAGAAA 58.471 52.632 11.91 0.00 42.08 2.52
614 615 0.865769 GTGCCTCTCGCGAAAGAAAA 59.134 50.000 11.91 0.00 42.08 2.29
615 616 1.263217 GTGCCTCTCGCGAAAGAAAAA 59.737 47.619 11.91 0.00 42.08 1.94
664 665 9.589111 AAAAATTTACTTTGGTCGAAAAGCTAA 57.411 25.926 9.07 4.99 40.20 3.09
665 666 8.797266 AAATTTACTTTGGTCGAAAAGCTAAG 57.203 30.769 9.07 2.74 41.86 2.18
666 667 5.934935 TTACTTTGGTCGAAAAGCTAAGG 57.065 39.130 9.07 0.00 40.89 2.69
667 668 4.081322 ACTTTGGTCGAAAAGCTAAGGA 57.919 40.909 9.07 0.00 40.89 3.36
668 669 4.457466 ACTTTGGTCGAAAAGCTAAGGAA 58.543 39.130 9.07 0.00 40.89 3.36
669 670 4.515567 ACTTTGGTCGAAAAGCTAAGGAAG 59.484 41.667 9.07 0.00 40.89 3.46
670 671 4.345859 TTGGTCGAAAAGCTAAGGAAGA 57.654 40.909 0.00 0.00 0.00 2.87
671 672 3.660865 TGGTCGAAAAGCTAAGGAAGAC 58.339 45.455 0.00 0.00 0.00 3.01
672 673 3.001414 GGTCGAAAAGCTAAGGAAGACC 58.999 50.000 9.27 9.27 39.83 3.85
673 674 2.666994 GTCGAAAAGCTAAGGAAGACCG 59.333 50.000 0.00 0.00 41.83 4.79
674 675 2.000447 CGAAAAGCTAAGGAAGACCGG 59.000 52.381 0.00 0.00 41.83 5.28
675 676 2.357075 GAAAAGCTAAGGAAGACCGGG 58.643 52.381 6.32 0.00 41.83 5.73
676 677 0.618981 AAAGCTAAGGAAGACCGGGG 59.381 55.000 6.32 0.00 41.83 5.73
677 678 1.272554 AAGCTAAGGAAGACCGGGGG 61.273 60.000 6.32 0.00 41.83 5.40
678 679 1.688187 GCTAAGGAAGACCGGGGGA 60.688 63.158 6.32 0.00 41.83 4.81
679 680 1.269703 GCTAAGGAAGACCGGGGGAA 61.270 60.000 6.32 0.00 41.83 3.97
680 681 1.282382 CTAAGGAAGACCGGGGGAAA 58.718 55.000 6.32 0.00 41.83 3.13
681 682 1.631898 CTAAGGAAGACCGGGGGAAAA 59.368 52.381 6.32 0.00 41.83 2.29
682 683 0.111832 AAGGAAGACCGGGGGAAAAC 59.888 55.000 6.32 0.00 41.83 2.43
683 684 1.303888 GGAAGACCGGGGGAAAACC 60.304 63.158 6.32 0.00 39.11 3.27
684 685 1.457165 GAAGACCGGGGGAAAACCA 59.543 57.895 6.32 0.00 42.91 3.67
685 686 0.178984 GAAGACCGGGGGAAAACCAA 60.179 55.000 6.32 0.00 42.91 3.67
686 687 0.262285 AAGACCGGGGGAAAACCAAA 59.738 50.000 6.32 0.00 42.91 3.28
687 688 0.262285 AGACCGGGGGAAAACCAAAA 59.738 50.000 6.32 0.00 42.91 2.44
688 689 0.390124 GACCGGGGGAAAACCAAAAC 59.610 55.000 6.32 0.00 42.91 2.43
689 690 1.364536 CCGGGGGAAAACCAAAACG 59.635 57.895 0.00 0.00 42.91 3.60
690 691 1.393487 CCGGGGGAAAACCAAAACGT 61.393 55.000 0.00 0.00 42.91 3.99
691 692 0.460722 CGGGGGAAAACCAAAACGTT 59.539 50.000 0.00 0.00 42.91 3.99
692 693 1.803252 CGGGGGAAAACCAAAACGTTG 60.803 52.381 0.00 0.00 42.91 4.10
693 694 1.481363 GGGGGAAAACCAAAACGTTGA 59.519 47.619 0.00 0.00 42.91 3.18
694 695 2.093606 GGGGGAAAACCAAAACGTTGAA 60.094 45.455 0.00 0.00 42.91 2.69
695 696 3.597255 GGGGAAAACCAAAACGTTGAAA 58.403 40.909 0.00 0.00 42.91 2.69
696 697 4.001652 GGGGAAAACCAAAACGTTGAAAA 58.998 39.130 0.00 0.00 42.91 2.29
697 698 4.454847 GGGGAAAACCAAAACGTTGAAAAA 59.545 37.500 0.00 0.00 42.91 1.94
727 728 6.477669 AAAAACCGTTTAAAAAGCCGAAAA 57.522 29.167 0.00 0.00 0.00 2.29
728 729 5.453281 AAACCGTTTAAAAAGCCGAAAAC 57.547 34.783 0.00 0.00 0.00 2.43
730 731 3.130797 CGTTTAAAAAGCCGAAAACGC 57.869 42.857 6.30 0.00 44.94 4.84
731 732 2.406245 CGTTTAAAAAGCCGAAAACGCG 60.406 45.455 3.53 3.53 44.94 6.01
732 733 2.471862 TTAAAAAGCCGAAAACGCGT 57.528 40.000 5.58 5.58 0.00 6.01
733 734 1.744374 TAAAAAGCCGAAAACGCGTG 58.256 45.000 14.98 0.00 0.00 5.34
734 735 1.476235 AAAAAGCCGAAAACGCGTGC 61.476 50.000 14.98 12.13 0.00 5.34
735 736 4.659874 AAGCCGAAAACGCGTGCG 62.660 61.111 14.98 17.33 46.03 5.34
737 738 4.653252 GCCGAAAACGCGTGCGAA 62.653 61.111 24.61 0.00 42.83 4.70
738 739 2.052941 CCGAAAACGCGTGCGAAA 60.053 55.556 24.61 0.00 42.83 3.46
739 740 1.651730 CCGAAAACGCGTGCGAAAA 60.652 52.632 24.61 0.00 42.83 2.29
740 741 1.194896 CCGAAAACGCGTGCGAAAAA 61.195 50.000 24.61 0.00 42.83 1.94
767 768 3.923017 AAACAAAATCTGAAGGGAGCG 57.077 42.857 0.00 0.00 0.00 5.03
768 769 2.568623 ACAAAATCTGAAGGGAGCGT 57.431 45.000 0.00 0.00 0.00 5.07
769 770 2.427506 ACAAAATCTGAAGGGAGCGTC 58.572 47.619 0.00 0.00 0.00 5.19
770 771 1.740025 CAAAATCTGAAGGGAGCGTCC 59.260 52.381 0.00 0.00 35.23 4.79
771 772 0.984230 AAATCTGAAGGGAGCGTCCA 59.016 50.000 6.41 0.00 38.64 4.02
772 773 0.984230 AATCTGAAGGGAGCGTCCAA 59.016 50.000 6.41 0.00 38.64 3.53
773 774 0.984230 ATCTGAAGGGAGCGTCCAAA 59.016 50.000 6.41 0.00 38.64 3.28
774 775 0.321671 TCTGAAGGGAGCGTCCAAAG 59.678 55.000 6.41 0.00 38.64 2.77
775 776 1.301677 CTGAAGGGAGCGTCCAAAGC 61.302 60.000 6.41 0.00 38.64 3.51
776 777 2.358737 AAGGGAGCGTCCAAAGCG 60.359 61.111 6.41 0.00 38.64 4.68
782 783 4.719616 GCGTCCAAAGCGCGACAC 62.720 66.667 12.10 0.00 45.36 3.67
784 785 3.335534 GTCCAAAGCGCGACACGT 61.336 61.111 12.10 0.00 46.11 4.49
785 786 3.334751 TCCAAAGCGCGACACGTG 61.335 61.111 15.48 15.48 46.11 4.49
786 787 3.636043 CCAAAGCGCGACACGTGT 61.636 61.111 23.64 23.64 46.11 4.49
787 788 2.128128 CAAAGCGCGACACGTGTC 60.128 61.111 33.76 33.76 46.11 3.67
795 796 4.261888 GACACGTGTCGAATGGCT 57.738 55.556 31.03 0.40 35.12 4.75
796 797 1.781555 GACACGTGTCGAATGGCTG 59.218 57.895 31.03 0.00 35.12 4.85
797 798 0.666274 GACACGTGTCGAATGGCTGA 60.666 55.000 31.03 0.00 35.12 4.26
798 799 0.667487 ACACGTGTCGAATGGCTGAG 60.667 55.000 17.22 0.00 0.00 3.35
799 800 0.388520 CACGTGTCGAATGGCTGAGA 60.389 55.000 7.58 0.00 0.00 3.27
800 801 0.109086 ACGTGTCGAATGGCTGAGAG 60.109 55.000 0.00 0.00 0.00 3.20
801 802 1.416813 CGTGTCGAATGGCTGAGAGC 61.417 60.000 0.00 0.00 41.46 4.09
802 803 1.153765 TGTCGAATGGCTGAGAGCG 60.154 57.895 0.00 0.00 43.62 5.03
803 804 2.202797 TCGAATGGCTGAGAGCGC 60.203 61.111 0.00 0.00 43.62 5.92
804 805 3.624300 CGAATGGCTGAGAGCGCG 61.624 66.667 0.00 0.00 43.62 6.86
805 806 3.934684 GAATGGCTGAGAGCGCGC 61.935 66.667 26.66 26.66 43.62 6.86
811 812 3.485431 CTGAGAGCGCGCCAAGTG 61.485 66.667 30.33 12.20 0.00 3.16
812 813 3.921767 CTGAGAGCGCGCCAAGTGA 62.922 63.158 30.33 6.19 0.00 3.41
813 814 3.482783 GAGAGCGCGCCAAGTGAC 61.483 66.667 30.33 10.54 0.00 3.67
820 821 3.084579 CGCCAAGTGACGCTGATC 58.915 61.111 0.00 0.00 0.00 2.92
821 822 2.792290 CGCCAAGTGACGCTGATCG 61.792 63.158 0.00 0.00 45.38 3.69
833 834 3.624726 CGCTGATCGTTGTTAAGTCTG 57.375 47.619 0.00 0.00 0.00 3.51
834 835 2.222596 CGCTGATCGTTGTTAAGTCTGC 60.223 50.000 0.00 0.00 0.00 4.26
835 836 2.094417 GCTGATCGTTGTTAAGTCTGCC 59.906 50.000 0.00 0.00 0.00 4.85
836 837 2.333926 TGATCGTTGTTAAGTCTGCCG 58.666 47.619 0.00 0.00 0.00 5.69
837 838 1.060698 GATCGTTGTTAAGTCTGCCGC 59.939 52.381 0.00 0.00 0.00 6.53
838 839 0.947180 TCGTTGTTAAGTCTGCCGCC 60.947 55.000 0.00 0.00 0.00 6.13
839 840 0.949105 CGTTGTTAAGTCTGCCGCCT 60.949 55.000 0.00 0.00 0.00 5.52
840 841 0.517316 GTTGTTAAGTCTGCCGCCTG 59.483 55.000 0.00 0.00 0.00 4.85
841 842 0.107831 TTGTTAAGTCTGCCGCCTGT 59.892 50.000 0.00 0.00 0.00 4.00
842 843 0.320421 TGTTAAGTCTGCCGCCTGTC 60.320 55.000 0.00 0.00 0.00 3.51
843 844 0.320421 GTTAAGTCTGCCGCCTGTCA 60.320 55.000 0.00 0.00 0.00 3.58
844 845 0.037326 TTAAGTCTGCCGCCTGTCAG 60.037 55.000 0.00 0.00 0.00 3.51
845 846 0.898326 TAAGTCTGCCGCCTGTCAGA 60.898 55.000 0.00 0.00 37.03 3.27
846 847 1.548357 AAGTCTGCCGCCTGTCAGAT 61.548 55.000 0.00 0.00 40.89 2.90
847 848 1.812922 GTCTGCCGCCTGTCAGATG 60.813 63.158 0.00 0.00 40.89 2.90
848 849 2.267006 CTGCCGCCTGTCAGATGT 59.733 61.111 0.00 0.00 32.26 3.06
849 850 2.046988 TGCCGCCTGTCAGATGTG 60.047 61.111 0.00 0.00 0.00 3.21
850 851 2.821366 GCCGCCTGTCAGATGTGG 60.821 66.667 0.00 2.86 0.00 4.17
851 852 2.124983 CCGCCTGTCAGATGTGGG 60.125 66.667 0.00 0.00 0.00 4.61
852 853 2.821366 CGCCTGTCAGATGTGGGC 60.821 66.667 0.00 0.00 39.43 5.36
853 854 2.673523 GCCTGTCAGATGTGGGCT 59.326 61.111 0.00 0.00 39.68 5.19
854 855 1.001641 GCCTGTCAGATGTGGGCTT 60.002 57.895 0.00 0.00 39.68 4.35
855 856 0.253044 GCCTGTCAGATGTGGGCTTA 59.747 55.000 0.00 0.00 39.68 3.09
856 857 1.133976 GCCTGTCAGATGTGGGCTTAT 60.134 52.381 0.00 0.00 39.68 1.73
857 858 2.684927 GCCTGTCAGATGTGGGCTTATT 60.685 50.000 0.00 0.00 39.68 1.40
858 859 3.433598 GCCTGTCAGATGTGGGCTTATTA 60.434 47.826 0.00 0.00 39.68 0.98
859 860 4.747931 GCCTGTCAGATGTGGGCTTATTAT 60.748 45.833 0.00 0.00 39.68 1.28
860 861 5.513094 GCCTGTCAGATGTGGGCTTATTATA 60.513 44.000 0.00 0.00 39.68 0.98
861 862 6.715280 CCTGTCAGATGTGGGCTTATTATAT 58.285 40.000 0.00 0.00 0.00 0.86
862 863 7.170965 CCTGTCAGATGTGGGCTTATTATATT 58.829 38.462 0.00 0.00 0.00 1.28
863 864 8.321353 CCTGTCAGATGTGGGCTTATTATATTA 58.679 37.037 0.00 0.00 0.00 0.98
864 865 9.896645 CTGTCAGATGTGGGCTTATTATATTAT 57.103 33.333 0.00 0.00 0.00 1.28
867 868 9.905713 TCAGATGTGGGCTTATTATATTATTCC 57.094 33.333 0.00 0.00 0.00 3.01
868 869 9.685276 CAGATGTGGGCTTATTATATTATTCCA 57.315 33.333 0.00 0.00 0.00 3.53
869 870 9.686683 AGATGTGGGCTTATTATATTATTCCAC 57.313 33.333 0.00 0.00 41.56 4.02
872 873 9.647918 TGTGGGCTTATTATATTATTCCACAAA 57.352 29.630 8.64 0.00 45.87 2.83
873 874 9.908152 GTGGGCTTATTATATTATTCCACAAAC 57.092 33.333 0.00 0.00 41.05 2.93
874 875 9.647918 TGGGCTTATTATATTATTCCACAAACA 57.352 29.630 0.00 0.00 0.00 2.83
884 885 7.687941 ATTATTCCACAAACAGTACTCCTTG 57.312 36.000 10.58 10.58 0.00 3.61
885 886 4.497291 TTCCACAAACAGTACTCCTTGT 57.503 40.909 11.64 11.64 32.31 3.16
886 887 3.804036 TCCACAAACAGTACTCCTTGTG 58.196 45.455 26.14 26.14 45.26 3.33
889 890 3.454375 ACAAACAGTACTCCTTGTGACG 58.546 45.455 15.23 0.00 31.00 4.35
890 891 3.131577 ACAAACAGTACTCCTTGTGACGA 59.868 43.478 15.23 0.00 31.00 4.20
891 892 3.644884 AACAGTACTCCTTGTGACGAG 57.355 47.619 0.00 0.00 0.00 4.18
892 893 1.269998 ACAGTACTCCTTGTGACGAGC 59.730 52.381 0.00 0.00 0.00 5.03
893 894 1.269723 CAGTACTCCTTGTGACGAGCA 59.730 52.381 0.00 0.00 0.00 4.26
894 895 2.094494 CAGTACTCCTTGTGACGAGCAT 60.094 50.000 0.00 0.00 0.00 3.79
895 896 2.164624 AGTACTCCTTGTGACGAGCATC 59.835 50.000 0.00 0.00 0.00 3.91
896 897 1.261480 ACTCCTTGTGACGAGCATCT 58.739 50.000 0.00 0.00 0.00 2.90
897 898 1.203523 ACTCCTTGTGACGAGCATCTC 59.796 52.381 0.00 0.00 0.00 2.75
918 919 4.592192 GCGAGGCAGCGGCATAGA 62.592 66.667 11.88 0.00 43.71 1.98
919 920 2.341543 CGAGGCAGCGGCATAGAT 59.658 61.111 11.88 0.00 43.71 1.98
920 921 1.586541 CGAGGCAGCGGCATAGATA 59.413 57.895 11.88 0.00 43.71 1.98
921 922 0.457509 CGAGGCAGCGGCATAGATAG 60.458 60.000 11.88 0.00 43.71 2.08
922 923 0.739112 GAGGCAGCGGCATAGATAGC 60.739 60.000 11.88 0.00 43.71 2.97
923 924 2.097038 GGCAGCGGCATAGATAGCG 61.097 63.158 11.88 0.00 43.71 4.26
924 925 1.080501 GCAGCGGCATAGATAGCGA 60.081 57.895 3.18 0.00 40.72 4.93
925 926 1.075425 GCAGCGGCATAGATAGCGAG 61.075 60.000 3.18 0.00 40.72 5.03
926 927 1.075425 CAGCGGCATAGATAGCGAGC 61.075 60.000 1.45 0.00 36.84 5.03
927 928 1.080501 GCGGCATAGATAGCGAGCA 60.081 57.895 0.00 0.00 36.67 4.26
928 929 0.459237 GCGGCATAGATAGCGAGCAT 60.459 55.000 0.00 0.00 36.67 3.79
929 930 1.202302 GCGGCATAGATAGCGAGCATA 60.202 52.381 0.00 0.00 36.67 3.14
930 931 2.455032 CGGCATAGATAGCGAGCATAC 58.545 52.381 0.00 0.00 0.00 2.39
931 932 2.159379 CGGCATAGATAGCGAGCATACA 60.159 50.000 0.00 0.00 0.00 2.29
932 933 3.443037 GGCATAGATAGCGAGCATACAG 58.557 50.000 0.00 0.00 0.00 2.74
933 934 3.443037 GCATAGATAGCGAGCATACAGG 58.557 50.000 0.00 0.00 0.00 4.00
934 935 3.129462 GCATAGATAGCGAGCATACAGGA 59.871 47.826 0.00 0.00 0.00 3.86
935 936 4.733230 GCATAGATAGCGAGCATACAGGAG 60.733 50.000 0.00 0.00 0.00 3.69
936 937 1.543802 AGATAGCGAGCATACAGGAGC 59.456 52.381 0.00 0.00 0.00 4.70
937 938 1.543802 GATAGCGAGCATACAGGAGCT 59.456 52.381 0.00 0.00 45.25 4.09
941 942 1.365633 GAGCATACAGGAGCTCGGG 59.634 63.158 7.83 4.58 46.53 5.14
942 943 1.075970 AGCATACAGGAGCTCGGGA 60.076 57.895 7.83 0.00 36.00 5.14
943 944 0.470833 AGCATACAGGAGCTCGGGAT 60.471 55.000 7.83 1.40 36.00 3.85
944 945 0.037790 GCATACAGGAGCTCGGGATC 60.038 60.000 7.83 0.00 0.00 3.36
945 946 1.332195 CATACAGGAGCTCGGGATCA 58.668 55.000 1.57 0.00 0.00 2.92
946 947 1.000283 CATACAGGAGCTCGGGATCAC 60.000 57.143 1.57 0.00 0.00 3.06
947 948 0.033503 TACAGGAGCTCGGGATCACA 60.034 55.000 1.57 0.00 0.00 3.58
948 949 0.689080 ACAGGAGCTCGGGATCACAT 60.689 55.000 1.57 0.00 0.00 3.21
949 950 1.332195 CAGGAGCTCGGGATCACATA 58.668 55.000 1.57 0.00 0.00 2.29
950 951 1.271934 CAGGAGCTCGGGATCACATAG 59.728 57.143 1.57 0.00 0.00 2.23
951 952 0.605589 GGAGCTCGGGATCACATAGG 59.394 60.000 1.57 0.00 0.00 2.57
952 953 0.037790 GAGCTCGGGATCACATAGGC 60.038 60.000 0.00 0.00 0.00 3.93
953 954 0.760567 AGCTCGGGATCACATAGGCA 60.761 55.000 0.00 0.00 0.00 4.75
954 955 0.601311 GCTCGGGATCACATAGGCAC 60.601 60.000 0.00 0.00 0.00 5.01
955 956 1.043816 CTCGGGATCACATAGGCACT 58.956 55.000 0.00 0.00 46.37 4.40
956 957 1.414181 CTCGGGATCACATAGGCACTT 59.586 52.381 0.00 0.00 41.75 3.16
957 958 1.837439 TCGGGATCACATAGGCACTTT 59.163 47.619 0.00 0.00 41.75 2.66
958 959 2.158957 TCGGGATCACATAGGCACTTTC 60.159 50.000 0.00 0.00 41.75 2.62
959 960 2.213499 GGGATCACATAGGCACTTTCG 58.787 52.381 0.00 0.00 41.75 3.46
960 961 2.213499 GGATCACATAGGCACTTTCGG 58.787 52.381 0.00 0.00 41.75 4.30
961 962 2.158957 GGATCACATAGGCACTTTCGGA 60.159 50.000 0.00 0.00 41.75 4.55
962 963 3.531538 GATCACATAGGCACTTTCGGAA 58.468 45.455 0.00 0.00 41.75 4.30
963 964 2.972625 TCACATAGGCACTTTCGGAAG 58.027 47.619 0.58 0.58 41.75 3.46
964 965 2.565391 TCACATAGGCACTTTCGGAAGA 59.435 45.455 11.34 0.00 41.75 2.87
1020 1023 0.910088 GCTACCCCTCCTGTTCTGGT 60.910 60.000 0.00 0.00 0.00 4.00
1085 1117 2.489073 GCTCCTCCAACCTTTCTTTCCA 60.489 50.000 0.00 0.00 0.00 3.53
1370 1439 0.106819 TCTACTACCTCGGCCTGGAC 60.107 60.000 17.14 0.00 0.00 4.02
1404 1473 3.057547 CTCTGGGTCTGCCTCGACG 62.058 68.421 0.00 0.00 34.75 5.12
1736 1919 2.102357 CGTCACGTAGCCAGCGAT 59.898 61.111 0.00 0.00 0.00 4.58
1921 2115 4.029472 GGTCCGCTACCTTCCTCA 57.971 61.111 0.00 0.00 45.75 3.86
1945 2156 4.294168 TCTCTTCTTCCTCCCTAGGTGTAA 59.706 45.833 8.29 0.00 44.09 2.41
2097 2387 6.528321 TGCTCCTCCTATCACTCATTTAATG 58.472 40.000 0.00 0.00 0.00 1.90
2196 2491 8.543774 GTGCTATGCTACTACTATCTGTTTTTG 58.456 37.037 0.00 0.00 0.00 2.44
2256 2774 7.735321 AGCTTCACTATTAGGGGTAATCTATGT 59.265 37.037 0.00 0.00 0.00 2.29
2257 2775 9.032624 GCTTCACTATTAGGGGTAATCTATGTA 57.967 37.037 0.00 0.00 0.00 2.29
2445 2972 7.484324 CGTGTTATAATCATGTTTTGTGATGCA 59.516 33.333 0.00 0.00 36.49 3.96
2513 3046 0.466189 CTTAATGGCGTGCATCCCCT 60.466 55.000 5.63 0.00 0.00 4.79
2545 3078 2.397549 GTGTTTTCTTCTGCATGGTGC 58.602 47.619 0.00 0.00 45.29 5.01
2554 3087 0.172578 CTGCATGGTGCTTGTGATGG 59.827 55.000 3.41 0.00 45.31 3.51
2605 3139 4.689612 TCTTCCTACATGCTGGTTATCC 57.310 45.455 0.00 0.00 0.00 2.59
2649 3185 4.276058 CACAATTTGCTTGATTTCCCCT 57.724 40.909 0.00 0.00 38.29 4.79
2652 3188 5.179929 CACAATTTGCTTGATTTCCCCTTTC 59.820 40.000 0.00 0.00 38.29 2.62
2738 4602 4.732784 CCTTGTGTTATTATGTGTGGTGC 58.267 43.478 0.00 0.00 0.00 5.01
2876 4754 4.965119 ATCTGTGTTTAATTTCGGGAGC 57.035 40.909 0.00 0.00 0.00 4.70
3017 4902 7.812191 GCTACAACCATGTGTTTAATCATTTGA 59.188 33.333 0.00 0.00 40.84 2.69
3081 4966 3.308438 AATGTTGTTTGCATCCTCAGC 57.692 42.857 0.00 0.00 0.00 4.26
3351 5240 1.002366 GTCTCTGTACATGCGCAAGG 58.998 55.000 17.11 13.12 38.28 3.61
3362 5251 2.323939 TGCGCAAGGAAATTTACACG 57.676 45.000 8.16 4.75 38.28 4.49
3467 5357 6.145209 TGTTTTAATCATGTTTTGTGATGCCG 59.855 34.615 0.00 0.00 36.49 5.69
3529 5530 3.826524 TGAAGTGCATTCCCAGTTTGTA 58.173 40.909 0.00 0.00 37.08 2.41
3554 5555 1.200948 GTGTTTCTTCTGCATGCTCCC 59.799 52.381 20.33 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.253850 GGAAAAATACGCGTTTTCTGTCTTTTT 60.254 33.333 25.57 16.24 42.22 1.94
9 10 6.197655 GGAAAAATACGCGTTTTCTGTCTTTT 59.802 34.615 25.57 16.79 42.22 2.27
10 11 5.684184 GGAAAAATACGCGTTTTCTGTCTTT 59.316 36.000 25.57 17.35 42.22 2.52
11 12 5.008316 AGGAAAAATACGCGTTTTCTGTCTT 59.992 36.000 25.57 13.57 42.22 3.01
12 13 4.514066 AGGAAAAATACGCGTTTTCTGTCT 59.486 37.500 25.57 16.01 42.22 3.41
13 14 4.779987 AGGAAAAATACGCGTTTTCTGTC 58.220 39.130 25.57 17.57 42.22 3.51
14 15 4.823790 AGGAAAAATACGCGTTTTCTGT 57.176 36.364 25.57 15.38 42.22 3.41
15 16 6.505039 AAAAGGAAAAATACGCGTTTTCTG 57.495 33.333 25.57 0.00 42.22 3.02
16 17 5.397240 CGAAAAGGAAAAATACGCGTTTTCT 59.603 36.000 25.57 13.93 42.22 2.52
17 18 5.396070 TCGAAAAGGAAAAATACGCGTTTTC 59.604 36.000 20.78 20.99 41.97 2.29
18 19 5.272397 TCGAAAAGGAAAAATACGCGTTTT 58.728 33.333 20.78 14.24 33.81 2.43
19 20 4.846509 TCGAAAAGGAAAAATACGCGTTT 58.153 34.783 20.78 6.76 0.00 3.60
20 21 4.471157 TCGAAAAGGAAAAATACGCGTT 57.529 36.364 20.78 0.00 0.00 4.84
21 22 4.471157 TTCGAAAAGGAAAAATACGCGT 57.529 36.364 19.17 19.17 0.00 6.01
22 23 5.141568 TCTTTCGAAAAGGAAAAATACGCG 58.858 37.500 12.41 3.53 35.64 6.01
23 24 5.567915 CCTCTTTCGAAAAGGAAAAATACGC 59.432 40.000 23.59 0.00 35.64 4.42
24 25 5.567915 GCCTCTTTCGAAAAGGAAAAATACG 59.432 40.000 28.33 9.95 35.64 3.06
25 26 6.362551 GTGCCTCTTTCGAAAAGGAAAAATAC 59.637 38.462 28.33 16.40 35.64 1.89
26 27 6.443792 GTGCCTCTTTCGAAAAGGAAAAATA 58.556 36.000 28.33 13.03 35.64 1.40
27 28 5.289595 GTGCCTCTTTCGAAAAGGAAAAAT 58.710 37.500 28.33 0.00 35.64 1.82
28 29 4.678622 GTGCCTCTTTCGAAAAGGAAAAA 58.321 39.130 28.33 15.37 35.64 1.94
29 30 3.242936 CGTGCCTCTTTCGAAAAGGAAAA 60.243 43.478 28.33 16.98 35.64 2.29
30 31 2.289547 CGTGCCTCTTTCGAAAAGGAAA 59.710 45.455 28.33 18.60 34.87 3.13
31 32 1.871039 CGTGCCTCTTTCGAAAAGGAA 59.129 47.619 28.33 21.29 31.44 3.36
32 33 1.508632 CGTGCCTCTTTCGAAAAGGA 58.491 50.000 28.33 17.09 31.44 3.36
33 34 0.110192 GCGTGCCTCTTTCGAAAAGG 60.110 55.000 23.60 23.60 0.00 3.11
34 35 0.110192 GGCGTGCCTCTTTCGAAAAG 60.110 55.000 12.41 11.57 0.00 2.27
35 36 1.512156 GGGCGTGCCTCTTTCGAAAA 61.512 55.000 12.41 2.66 36.10 2.29
36 37 1.964373 GGGCGTGCCTCTTTCGAAA 60.964 57.895 10.71 10.71 36.10 3.46
37 38 2.358247 GGGCGTGCCTCTTTCGAA 60.358 61.111 11.25 0.00 36.10 3.71
38 39 4.735132 CGGGCGTGCCTCTTTCGA 62.735 66.667 11.25 0.00 36.10 3.71
40 41 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
41 42 3.936203 TCACGGGCGTGCCTCTTT 61.936 61.111 11.25 0.00 45.04 2.52
42 43 4.681978 GTCACGGGCGTGCCTCTT 62.682 66.667 11.25 0.00 45.04 2.85
51 52 3.909258 TTTCGCGAGAGTCACGGGC 62.909 63.158 19.58 3.80 43.69 6.13
52 53 1.801913 CTTTCGCGAGAGTCACGGG 60.802 63.158 17.92 18.58 43.69 5.28
53 54 2.437343 GCTTTCGCGAGAGTCACGG 61.437 63.158 25.34 2.90 43.69 4.94
54 55 1.729484 TGCTTTCGCGAGAGTCACG 60.729 57.895 25.34 5.53 43.69 4.35
55 56 0.939577 TGTGCTTTCGCGAGAGTCAC 60.940 55.000 29.56 29.56 43.69 3.67
56 57 0.249280 TTGTGCTTTCGCGAGAGTCA 60.249 50.000 25.34 20.22 43.69 3.41
57 58 0.161870 GTTGTGCTTTCGCGAGAGTC 59.838 55.000 25.34 18.16 43.69 3.36
58 59 1.222115 GGTTGTGCTTTCGCGAGAGT 61.222 55.000 25.34 0.00 43.69 3.24
59 60 1.493311 GGTTGTGCTTTCGCGAGAG 59.507 57.895 21.42 21.42 43.69 3.20
60 61 2.307309 CGGTTGTGCTTTCGCGAGA 61.307 57.895 9.59 3.35 39.65 4.04
61 62 2.170985 CGGTTGTGCTTTCGCGAG 59.829 61.111 9.59 0.00 39.65 5.03
62 63 2.586635 ACGGTTGTGCTTTCGCGA 60.587 55.556 3.71 3.71 39.65 5.87
63 64 2.425124 CACGGTTGTGCTTTCGCG 60.425 61.111 0.00 0.00 39.67 5.87
80 81 0.664466 GTTTTGCTTTCGCCAGAGGC 60.664 55.000 0.00 0.00 46.75 4.70
81 82 0.039165 GGTTTTGCTTTCGCCAGAGG 60.039 55.000 0.00 0.00 34.43 3.69
82 83 0.385974 CGGTTTTGCTTTCGCCAGAG 60.386 55.000 0.00 0.00 34.43 3.35
83 84 1.098712 ACGGTTTTGCTTTCGCCAGA 61.099 50.000 0.00 0.00 34.43 3.86
84 85 0.934436 CACGGTTTTGCTTTCGCCAG 60.934 55.000 0.00 0.00 34.43 4.85
85 86 1.064946 CACGGTTTTGCTTTCGCCA 59.935 52.632 0.00 0.00 34.43 5.69
86 87 0.933047 GTCACGGTTTTGCTTTCGCC 60.933 55.000 0.00 0.00 34.43 5.54
87 88 0.028902 AGTCACGGTTTTGCTTTCGC 59.971 50.000 0.00 0.00 0.00 4.70
88 89 1.597663 AGAGTCACGGTTTTGCTTTCG 59.402 47.619 0.00 0.00 0.00 3.46
89 90 2.348591 CGAGAGTCACGGTTTTGCTTTC 60.349 50.000 1.62 0.00 0.00 2.62
90 91 1.597663 CGAGAGTCACGGTTTTGCTTT 59.402 47.619 1.62 0.00 0.00 3.51
91 92 1.217882 CGAGAGTCACGGTTTTGCTT 58.782 50.000 1.62 0.00 0.00 3.91
92 93 1.222115 GCGAGAGTCACGGTTTTGCT 61.222 55.000 11.95 0.00 0.00 3.91
93 94 1.204312 GCGAGAGTCACGGTTTTGC 59.796 57.895 11.95 0.00 0.00 3.68
94 95 0.937699 TCGCGAGAGTCACGGTTTTG 60.938 55.000 3.71 0.00 34.84 2.44
95 96 0.249155 TTCGCGAGAGTCACGGTTTT 60.249 50.000 9.59 0.00 43.69 2.43
96 97 0.249155 TTTCGCGAGAGTCACGGTTT 60.249 50.000 9.59 0.00 43.69 3.27
97 98 0.663568 CTTTCGCGAGAGTCACGGTT 60.664 55.000 17.92 0.00 43.69 4.44
98 99 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
99 100 0.386858 TTCTTTCGCGAGAGTCACGG 60.387 55.000 24.05 0.86 43.69 4.94
100 101 1.405461 TTTCTTTCGCGAGAGTCACG 58.595 50.000 24.05 5.53 43.69 4.35
101 102 3.854286 TTTTTCTTTCGCGAGAGTCAC 57.146 42.857 24.05 0.00 43.69 3.67
342 343 6.249035 TCTCGAAAAGGAAAAATATGCGTT 57.751 33.333 0.00 0.00 0.00 4.84
343 344 5.163754 CCTCTCGAAAAGGAAAAATATGCGT 60.164 40.000 7.60 0.00 35.83 5.24
344 345 5.266242 CCTCTCGAAAAGGAAAAATATGCG 58.734 41.667 7.60 0.00 35.83 4.73
345 346 5.037385 GCCTCTCGAAAAGGAAAAATATGC 58.963 41.667 15.90 0.00 35.83 3.14
346 347 6.030228 GTGCCTCTCGAAAAGGAAAAATATG 58.970 40.000 15.90 0.00 35.83 1.78
347 348 5.163754 CGTGCCTCTCGAAAAGGAAAAATAT 60.164 40.000 15.90 0.00 35.83 1.28
348 349 4.153475 CGTGCCTCTCGAAAAGGAAAAATA 59.847 41.667 15.90 0.00 35.83 1.40
349 350 3.058224 CGTGCCTCTCGAAAAGGAAAAAT 60.058 43.478 15.90 0.00 35.83 1.82
350 351 2.289547 CGTGCCTCTCGAAAAGGAAAAA 59.710 45.455 15.90 0.00 35.83 1.94
351 352 1.871039 CGTGCCTCTCGAAAAGGAAAA 59.129 47.619 15.90 0.20 35.83 2.29
352 353 1.508632 CGTGCCTCTCGAAAAGGAAA 58.491 50.000 15.90 2.36 35.83 3.13
353 354 0.320421 CCGTGCCTCTCGAAAAGGAA 60.320 55.000 15.90 4.06 35.83 3.36
354 355 1.292223 CCGTGCCTCTCGAAAAGGA 59.708 57.895 15.90 0.00 35.83 3.36
355 356 2.391389 GCCGTGCCTCTCGAAAAGG 61.391 63.158 8.80 8.80 36.95 3.11
356 357 2.391389 GGCCGTGCCTCTCGAAAAG 61.391 63.158 7.58 0.00 46.69 2.27
357 358 2.358247 GGCCGTGCCTCTCGAAAA 60.358 61.111 7.58 0.00 46.69 2.29
377 378 0.235926 GTTGTGCTTTGACGAGAGGC 59.764 55.000 0.00 0.00 42.12 4.70
378 379 0.868406 GGTTGTGCTTTGACGAGAGG 59.132 55.000 0.00 0.00 0.00 3.69
379 380 0.508641 CGGTTGTGCTTTGACGAGAG 59.491 55.000 0.00 0.00 0.00 3.20
380 381 0.179094 ACGGTTGTGCTTTGACGAGA 60.179 50.000 0.00 0.00 0.00 4.04
381 382 0.042188 CACGGTTGTGCTTTGACGAG 60.042 55.000 0.00 0.00 39.67 4.18
382 383 2.010670 CACGGTTGTGCTTTGACGA 58.989 52.632 0.00 0.00 39.67 4.20
383 384 4.588084 CACGGTTGTGCTTTGACG 57.412 55.556 0.00 0.00 39.67 4.35
401 402 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
402 403 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
403 404 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
404 405 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
409 410 1.531578 GAGAGTCACGGTTTTGCTTCC 59.468 52.381 0.00 0.00 0.00 3.46
410 411 1.192534 CGAGAGTCACGGTTTTGCTTC 59.807 52.381 1.62 0.00 0.00 3.86
411 412 1.217882 CGAGAGTCACGGTTTTGCTT 58.782 50.000 1.62 0.00 0.00 3.91
412 413 1.222115 GCGAGAGTCACGGTTTTGCT 61.222 55.000 11.95 0.00 0.00 3.91
413 414 1.204312 GCGAGAGTCACGGTTTTGC 59.796 57.895 11.95 0.00 0.00 3.68
414 415 0.937699 TCGCGAGAGTCACGGTTTTG 60.938 55.000 3.71 0.00 34.84 2.44
415 416 0.249155 TTCGCGAGAGTCACGGTTTT 60.249 50.000 9.59 0.00 43.69 2.43
416 417 0.249155 TTTCGCGAGAGTCACGGTTT 60.249 50.000 9.59 0.00 43.69 3.27
417 418 0.663568 CTTTCGCGAGAGTCACGGTT 60.664 55.000 17.92 0.00 43.69 4.44
418 419 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
419 420 0.386858 TTCTTTCGCGAGAGTCACGG 60.387 55.000 24.05 0.86 43.69 4.94
420 421 1.405461 TTTCTTTCGCGAGAGTCACG 58.595 50.000 24.05 5.53 43.69 4.35
421 422 3.854286 TTTTTCTTTCGCGAGAGTCAC 57.146 42.857 24.05 0.00 43.69 3.67
440 441 4.975921 ACAAAACGCGTTTTCTGTTTTT 57.024 31.818 38.94 19.38 42.20 1.94
441 442 4.975921 AACAAAACGCGTTTTCTGTTTT 57.024 31.818 38.94 25.02 44.21 2.43
442 443 4.975921 AAACAAAACGCGTTTTCTGTTT 57.024 31.818 37.33 37.33 40.45 2.83
443 444 4.975921 AAAACAAAACGCGTTTTCTGTT 57.024 31.818 38.94 35.66 41.51 3.16
444 445 4.143284 GGAAAAACAAAACGCGTTTTCTGT 60.143 37.500 38.94 32.98 43.82 3.41
445 446 4.090786 AGGAAAAACAAAACGCGTTTTCTG 59.909 37.500 38.94 32.39 43.82 3.02
446 447 4.239304 AGGAAAAACAAAACGCGTTTTCT 58.761 34.783 38.94 28.85 43.82 2.52
447 448 4.571375 AGGAAAAACAAAACGCGTTTTC 57.429 36.364 38.94 28.37 43.82 2.29
448 449 4.994220 AAGGAAAAACAAAACGCGTTTT 57.006 31.818 36.93 36.93 45.90 2.43
449 450 4.143073 GGAAAGGAAAAACAAAACGCGTTT 60.143 37.500 30.36 30.36 38.19 3.60
450 451 3.368539 GGAAAGGAAAAACAAAACGCGTT 59.631 39.130 20.79 20.79 0.00 4.84
451 452 2.924926 GGAAAGGAAAAACAAAACGCGT 59.075 40.909 5.58 5.58 0.00 6.01
452 453 2.035259 CGGAAAGGAAAAACAAAACGCG 60.035 45.455 3.53 3.53 0.00 6.01
453 454 3.180613 TCGGAAAGGAAAAACAAAACGC 58.819 40.909 0.00 0.00 0.00 4.84
454 455 4.664188 TCTCGGAAAGGAAAAACAAAACG 58.336 39.130 0.00 0.00 0.00 3.60
455 456 5.041287 CCTCTCGGAAAGGAAAAACAAAAC 58.959 41.667 0.00 0.00 35.83 2.43
456 457 4.440940 GCCTCTCGGAAAGGAAAAACAAAA 60.441 41.667 0.36 0.00 35.83 2.44
457 458 3.067601 GCCTCTCGGAAAGGAAAAACAAA 59.932 43.478 0.36 0.00 35.83 2.83
458 459 2.621526 GCCTCTCGGAAAGGAAAAACAA 59.378 45.455 0.36 0.00 35.83 2.83
459 460 2.227194 GCCTCTCGGAAAGGAAAAACA 58.773 47.619 0.36 0.00 35.83 2.83
460 461 2.031069 GTGCCTCTCGGAAAGGAAAAAC 60.031 50.000 0.36 0.00 35.83 2.43
461 462 2.227194 GTGCCTCTCGGAAAGGAAAAA 58.773 47.619 0.36 0.00 35.83 1.94
462 463 1.876416 CGTGCCTCTCGGAAAGGAAAA 60.876 52.381 0.36 0.00 35.83 2.29
463 464 0.320421 CGTGCCTCTCGGAAAGGAAA 60.320 55.000 0.36 0.00 35.83 3.13
464 465 1.292223 CGTGCCTCTCGGAAAGGAA 59.708 57.895 0.36 0.00 35.83 3.36
465 466 2.970639 CGTGCCTCTCGGAAAGGA 59.029 61.111 0.36 0.00 35.83 3.36
483 484 4.415332 TTCCGCGAGAGTCACGGC 62.415 66.667 8.23 3.61 46.49 5.68
485 486 0.167470 TTACTTCCGCGAGAGTCACG 59.833 55.000 8.23 5.53 0.00 4.35
486 487 2.342910 TTTACTTCCGCGAGAGTCAC 57.657 50.000 8.23 0.00 0.00 3.67
487 488 2.608752 GGTTTTACTTCCGCGAGAGTCA 60.609 50.000 8.23 0.00 0.00 3.41
488 489 1.991264 GGTTTTACTTCCGCGAGAGTC 59.009 52.381 8.23 0.00 0.00 3.36
489 490 1.668047 CGGTTTTACTTCCGCGAGAGT 60.668 52.381 8.23 13.72 40.28 3.24
490 491 0.989890 CGGTTTTACTTCCGCGAGAG 59.010 55.000 8.23 7.50 40.28 3.20
491 492 3.111536 CGGTTTTACTTCCGCGAGA 57.888 52.632 8.23 0.00 40.28 4.04
497 498 2.985139 CGAGAGTCACGGTTTTACTTCC 59.015 50.000 1.62 0.00 0.00 3.46
498 499 2.407696 GCGAGAGTCACGGTTTTACTTC 59.592 50.000 11.95 0.00 0.00 3.01
499 500 2.401351 GCGAGAGTCACGGTTTTACTT 58.599 47.619 11.95 0.00 0.00 2.24
500 501 1.665161 CGCGAGAGTCACGGTTTTACT 60.665 52.381 11.95 0.00 0.00 2.24
501 502 0.706729 CGCGAGAGTCACGGTTTTAC 59.293 55.000 11.95 0.00 0.00 2.01
502 503 0.592637 TCGCGAGAGTCACGGTTTTA 59.407 50.000 3.71 0.00 34.84 1.52
503 504 0.249155 TTCGCGAGAGTCACGGTTTT 60.249 50.000 9.59 0.00 43.69 2.43
504 505 0.249155 TTTCGCGAGAGTCACGGTTT 60.249 50.000 9.59 0.00 43.69 3.27
505 506 0.663568 CTTTCGCGAGAGTCACGGTT 60.664 55.000 17.92 0.00 43.69 4.44
506 507 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
507 508 0.386858 TTCTTTCGCGAGAGTCACGG 60.387 55.000 24.05 0.86 43.69 4.94
508 509 1.405461 TTTCTTTCGCGAGAGTCACG 58.595 50.000 24.05 5.53 43.69 4.35
509 510 3.854286 TTTTTCTTTCGCGAGAGTCAC 57.146 42.857 24.05 0.00 43.69 3.67
567 568 2.537792 TTTAGCGAGAGTCACGGCCG 62.538 60.000 26.86 26.86 0.00 6.13
568 569 0.179108 ATTTAGCGAGAGTCACGGCC 60.179 55.000 11.95 0.00 0.00 6.13
569 570 1.201343 GATTTAGCGAGAGTCACGGC 58.799 55.000 11.95 4.46 0.00 5.68
570 571 2.186076 GTGATTTAGCGAGAGTCACGG 58.814 52.381 11.95 0.00 31.15 4.94
571 572 2.863739 TGTGATTTAGCGAGAGTCACG 58.136 47.619 5.53 5.53 41.45 4.35
572 573 3.368236 GGTTGTGATTTAGCGAGAGTCAC 59.632 47.826 0.00 0.00 39.58 3.67
573 574 3.585862 GGTTGTGATTTAGCGAGAGTCA 58.414 45.455 0.00 0.00 0.00 3.41
574 575 2.599082 CGGTTGTGATTTAGCGAGAGTC 59.401 50.000 0.00 0.00 37.44 3.36
575 576 2.029290 ACGGTTGTGATTTAGCGAGAGT 60.029 45.455 0.00 0.00 38.51 3.24
576 577 2.607187 ACGGTTGTGATTTAGCGAGAG 58.393 47.619 0.00 0.00 38.51 3.20
577 578 2.736144 ACGGTTGTGATTTAGCGAGA 57.264 45.000 0.00 0.00 38.51 4.04
590 591 4.717629 TCGCGAGAGGCACGGTTG 62.718 66.667 3.71 0.00 43.84 3.77
591 592 3.509137 TTTCGCGAGAGGCACGGTT 62.509 57.895 9.59 0.00 43.84 4.44
592 593 3.916392 CTTTCGCGAGAGGCACGGT 62.916 63.158 18.35 0.00 43.84 4.83
593 594 3.181967 CTTTCGCGAGAGGCACGG 61.182 66.667 18.35 0.00 43.84 4.94
594 595 1.282248 TTTCTTTCGCGAGAGGCACG 61.282 55.000 24.53 1.69 43.84 5.34
595 596 0.865769 TTTTCTTTCGCGAGAGGCAC 59.134 50.000 24.53 0.00 43.84 5.01
596 597 1.588674 TTTTTCTTTCGCGAGAGGCA 58.411 45.000 24.53 10.58 43.84 4.75
638 639 9.589111 TTAGCTTTTCGACCAAAGTAAATTTTT 57.411 25.926 10.46 0.00 36.32 1.94
639 640 9.244799 CTTAGCTTTTCGACCAAAGTAAATTTT 57.755 29.630 10.46 0.00 36.32 1.82
640 641 7.865889 CCTTAGCTTTTCGACCAAAGTAAATTT 59.134 33.333 10.46 0.00 36.32 1.82
641 642 7.229907 TCCTTAGCTTTTCGACCAAAGTAAATT 59.770 33.333 10.46 0.00 36.32 1.82
642 643 6.713450 TCCTTAGCTTTTCGACCAAAGTAAAT 59.287 34.615 10.46 0.08 36.32 1.40
643 644 6.056884 TCCTTAGCTTTTCGACCAAAGTAAA 58.943 36.000 10.46 5.48 36.32 2.01
644 645 5.613329 TCCTTAGCTTTTCGACCAAAGTAA 58.387 37.500 10.46 7.50 36.32 2.24
645 646 5.217978 TCCTTAGCTTTTCGACCAAAGTA 57.782 39.130 10.46 1.47 36.32 2.24
646 647 4.081322 TCCTTAGCTTTTCGACCAAAGT 57.919 40.909 10.46 2.22 36.32 2.66
647 648 4.755123 TCTTCCTTAGCTTTTCGACCAAAG 59.245 41.667 5.40 5.40 36.91 2.77
648 649 4.514066 GTCTTCCTTAGCTTTTCGACCAAA 59.486 41.667 0.00 0.00 0.00 3.28
649 650 4.062991 GTCTTCCTTAGCTTTTCGACCAA 58.937 43.478 0.00 0.00 0.00 3.67
650 651 3.556423 GGTCTTCCTTAGCTTTTCGACCA 60.556 47.826 0.00 0.00 39.47 4.02
651 652 3.001414 GGTCTTCCTTAGCTTTTCGACC 58.999 50.000 0.00 0.00 33.73 4.79
652 653 2.666994 CGGTCTTCCTTAGCTTTTCGAC 59.333 50.000 0.00 0.00 0.00 4.20
653 654 2.353406 CCGGTCTTCCTTAGCTTTTCGA 60.353 50.000 0.00 0.00 0.00 3.71
654 655 2.000447 CCGGTCTTCCTTAGCTTTTCG 59.000 52.381 0.00 0.00 0.00 3.46
655 656 2.357075 CCCGGTCTTCCTTAGCTTTTC 58.643 52.381 0.00 0.00 0.00 2.29
656 657 1.004394 CCCCGGTCTTCCTTAGCTTTT 59.996 52.381 0.00 0.00 0.00 2.27
657 658 0.618981 CCCCGGTCTTCCTTAGCTTT 59.381 55.000 0.00 0.00 0.00 3.51
658 659 1.272554 CCCCCGGTCTTCCTTAGCTT 61.273 60.000 0.00 0.00 0.00 3.74
659 660 1.689582 CCCCCGGTCTTCCTTAGCT 60.690 63.158 0.00 0.00 0.00 3.32
660 661 1.269703 TTCCCCCGGTCTTCCTTAGC 61.270 60.000 0.00 0.00 0.00 3.09
661 662 1.282382 TTTCCCCCGGTCTTCCTTAG 58.718 55.000 0.00 0.00 0.00 2.18
662 663 1.352017 GTTTTCCCCCGGTCTTCCTTA 59.648 52.381 0.00 0.00 0.00 2.69
663 664 0.111832 GTTTTCCCCCGGTCTTCCTT 59.888 55.000 0.00 0.00 0.00 3.36
664 665 1.765727 GTTTTCCCCCGGTCTTCCT 59.234 57.895 0.00 0.00 0.00 3.36
665 666 1.303888 GGTTTTCCCCCGGTCTTCC 60.304 63.158 0.00 0.00 0.00 3.46
666 667 0.178984 TTGGTTTTCCCCCGGTCTTC 60.179 55.000 0.00 0.00 39.73 2.87
667 668 0.262285 TTTGGTTTTCCCCCGGTCTT 59.738 50.000 0.00 0.00 39.73 3.01
668 669 0.262285 TTTTGGTTTTCCCCCGGTCT 59.738 50.000 0.00 0.00 39.73 3.85
669 670 0.390124 GTTTTGGTTTTCCCCCGGTC 59.610 55.000 0.00 0.00 39.73 4.79
670 671 1.393487 CGTTTTGGTTTTCCCCCGGT 61.393 55.000 0.00 0.00 39.73 5.28
671 672 1.364536 CGTTTTGGTTTTCCCCCGG 59.635 57.895 0.00 0.00 39.73 5.73
672 673 0.460722 AACGTTTTGGTTTTCCCCCG 59.539 50.000 0.00 0.00 39.73 5.73
673 674 1.481363 TCAACGTTTTGGTTTTCCCCC 59.519 47.619 0.00 0.00 39.73 5.40
674 675 2.963548 TCAACGTTTTGGTTTTCCCC 57.036 45.000 0.00 0.00 39.73 4.81
675 676 5.608676 TTTTTCAACGTTTTGGTTTTCCC 57.391 34.783 0.00 0.00 39.73 3.97
704 705 6.305639 GTTTTCGGCTTTTTAAACGGTTTTT 58.694 32.000 11.87 0.00 0.00 1.94
705 706 5.444350 CGTTTTCGGCTTTTTAAACGGTTTT 60.444 36.000 11.87 0.00 45.26 2.43
706 707 4.031539 CGTTTTCGGCTTTTTAAACGGTTT 59.968 37.500 11.33 11.33 45.26 3.27
707 708 3.547068 CGTTTTCGGCTTTTTAAACGGTT 59.453 39.130 10.17 0.00 45.26 4.44
708 709 3.107407 CGTTTTCGGCTTTTTAAACGGT 58.893 40.909 10.17 0.00 45.26 4.83
709 710 3.739484 CGTTTTCGGCTTTTTAAACGG 57.261 42.857 10.17 0.00 45.26 4.44
711 712 2.531103 ACGCGTTTTCGGCTTTTTAAAC 59.469 40.909 5.58 0.00 44.29 2.01
712 713 2.530700 CACGCGTTTTCGGCTTTTTAAA 59.469 40.909 10.22 0.00 44.29 1.52
713 714 2.110226 CACGCGTTTTCGGCTTTTTAA 58.890 42.857 10.22 0.00 44.29 1.52
714 715 1.744374 CACGCGTTTTCGGCTTTTTA 58.256 45.000 10.22 0.00 44.29 1.52
715 716 1.476235 GCACGCGTTTTCGGCTTTTT 61.476 50.000 10.22 0.00 44.29 1.94
716 717 1.942223 GCACGCGTTTTCGGCTTTT 60.942 52.632 10.22 0.00 44.29 2.27
717 718 2.353030 GCACGCGTTTTCGGCTTT 60.353 55.556 10.22 0.00 44.29 3.51
718 719 4.659874 CGCACGCGTTTTCGGCTT 62.660 61.111 10.22 0.00 44.29 4.35
720 721 4.653252 TTCGCACGCGTTTTCGGC 62.653 61.111 10.22 9.05 44.29 5.54
721 722 1.194896 TTTTTCGCACGCGTTTTCGG 61.195 50.000 10.22 0.00 44.29 4.30
745 746 4.099419 ACGCTCCCTTCAGATTTTGTTTTT 59.901 37.500 0.00 0.00 0.00 1.94
746 747 3.636764 ACGCTCCCTTCAGATTTTGTTTT 59.363 39.130 0.00 0.00 0.00 2.43
747 748 3.222603 ACGCTCCCTTCAGATTTTGTTT 58.777 40.909 0.00 0.00 0.00 2.83
748 749 2.814336 GACGCTCCCTTCAGATTTTGTT 59.186 45.455 0.00 0.00 0.00 2.83
749 750 2.427506 GACGCTCCCTTCAGATTTTGT 58.572 47.619 0.00 0.00 0.00 2.83
750 751 1.740025 GGACGCTCCCTTCAGATTTTG 59.260 52.381 0.00 0.00 0.00 2.44
751 752 1.351017 TGGACGCTCCCTTCAGATTTT 59.649 47.619 2.23 0.00 35.03 1.82
752 753 0.984230 TGGACGCTCCCTTCAGATTT 59.016 50.000 2.23 0.00 35.03 2.17
753 754 0.984230 TTGGACGCTCCCTTCAGATT 59.016 50.000 2.23 0.00 35.03 2.40
754 755 0.984230 TTTGGACGCTCCCTTCAGAT 59.016 50.000 2.23 0.00 35.03 2.90
755 756 0.321671 CTTTGGACGCTCCCTTCAGA 59.678 55.000 2.23 0.00 35.03 3.27
756 757 1.301677 GCTTTGGACGCTCCCTTCAG 61.302 60.000 2.23 0.00 35.03 3.02
757 758 1.302511 GCTTTGGACGCTCCCTTCA 60.303 57.895 2.23 0.00 35.03 3.02
758 759 2.391389 CGCTTTGGACGCTCCCTTC 61.391 63.158 2.23 0.00 35.03 3.46
759 760 2.358737 CGCTTTGGACGCTCCCTT 60.359 61.111 2.23 0.00 35.03 3.95
766 767 4.409588 CGTGTCGCGCTTTGGACG 62.410 66.667 5.56 2.76 35.95 4.79
767 768 3.335534 ACGTGTCGCGCTTTGGAC 61.336 61.111 5.56 5.97 46.11 4.02
768 769 3.334751 CACGTGTCGCGCTTTGGA 61.335 61.111 7.58 0.00 46.11 3.53
769 770 3.558282 GACACGTGTCGCGCTTTGG 62.558 63.158 31.03 0.00 46.11 3.28
770 771 2.128128 GACACGTGTCGCGCTTTG 60.128 61.111 31.03 0.00 46.11 2.77
778 779 0.666274 TCAGCCATTCGACACGTGTC 60.666 55.000 33.76 33.76 41.47 3.67
779 780 0.667487 CTCAGCCATTCGACACGTGT 60.667 55.000 23.64 23.64 0.00 4.49
780 781 0.388520 TCTCAGCCATTCGACACGTG 60.389 55.000 15.48 15.48 0.00 4.49
781 782 0.109086 CTCTCAGCCATTCGACACGT 60.109 55.000 0.00 0.00 0.00 4.49
782 783 1.416813 GCTCTCAGCCATTCGACACG 61.417 60.000 0.00 0.00 34.48 4.49
783 784 1.416813 CGCTCTCAGCCATTCGACAC 61.417 60.000 0.00 0.00 38.18 3.67
784 785 1.153765 CGCTCTCAGCCATTCGACA 60.154 57.895 0.00 0.00 38.18 4.35
785 786 2.520904 GCGCTCTCAGCCATTCGAC 61.521 63.158 0.00 0.00 38.18 4.20
786 787 2.202797 GCGCTCTCAGCCATTCGA 60.203 61.111 0.00 0.00 38.18 3.71
787 788 3.624300 CGCGCTCTCAGCCATTCG 61.624 66.667 5.56 0.00 38.18 3.34
788 789 3.934684 GCGCGCTCTCAGCCATTC 61.935 66.667 26.67 0.00 38.18 2.67
794 795 3.485431 CACTTGGCGCGCTCTCAG 61.485 66.667 32.29 21.96 0.00 3.35
795 796 3.989787 TCACTTGGCGCGCTCTCA 61.990 61.111 32.29 18.24 0.00 3.27
796 797 3.482783 GTCACTTGGCGCGCTCTC 61.483 66.667 32.29 15.45 0.00 3.20
804 805 3.084579 CGATCAGCGTCACTTGGC 58.915 61.111 0.00 0.00 34.64 4.52
814 815 2.094417 GGCAGACTTAACAACGATCAGC 59.906 50.000 0.00 0.00 0.00 4.26
815 816 2.345641 CGGCAGACTTAACAACGATCAG 59.654 50.000 0.00 0.00 0.00 2.90
816 817 2.333926 CGGCAGACTTAACAACGATCA 58.666 47.619 0.00 0.00 0.00 2.92
817 818 1.060698 GCGGCAGACTTAACAACGATC 59.939 52.381 0.00 0.00 0.00 3.69
818 819 1.076332 GCGGCAGACTTAACAACGAT 58.924 50.000 0.00 0.00 0.00 3.73
819 820 0.947180 GGCGGCAGACTTAACAACGA 60.947 55.000 3.07 0.00 0.00 3.85
820 821 0.949105 AGGCGGCAGACTTAACAACG 60.949 55.000 13.08 0.00 24.03 4.10
821 822 0.517316 CAGGCGGCAGACTTAACAAC 59.483 55.000 13.08 0.00 29.21 3.32
822 823 0.107831 ACAGGCGGCAGACTTAACAA 59.892 50.000 13.08 0.00 29.21 2.83
823 824 0.320421 GACAGGCGGCAGACTTAACA 60.320 55.000 13.08 0.00 29.21 2.41
824 825 0.320421 TGACAGGCGGCAGACTTAAC 60.320 55.000 13.08 0.00 29.21 2.01
825 826 0.037326 CTGACAGGCGGCAGACTTAA 60.037 55.000 13.08 0.00 29.21 1.85
826 827 0.898326 TCTGACAGGCGGCAGACTTA 60.898 55.000 13.08 0.00 36.31 2.24
827 828 1.548357 ATCTGACAGGCGGCAGACTT 61.548 55.000 15.33 0.72 43.26 3.01
828 829 1.986757 ATCTGACAGGCGGCAGACT 60.987 57.895 15.33 0.00 43.26 3.24
829 830 1.812922 CATCTGACAGGCGGCAGAC 60.813 63.158 15.33 3.96 43.26 3.51
830 831 2.285773 ACATCTGACAGGCGGCAGA 61.286 57.895 13.08 15.36 44.43 4.26
831 832 2.104859 CACATCTGACAGGCGGCAG 61.105 63.158 13.08 5.57 0.00 4.85
832 833 2.046988 CACATCTGACAGGCGGCA 60.047 61.111 13.08 0.00 0.00 5.69
833 834 2.821366 CCACATCTGACAGGCGGC 60.821 66.667 0.00 0.00 0.00 6.53
834 835 2.124983 CCCACATCTGACAGGCGG 60.125 66.667 1.81 0.00 0.00 6.13
835 836 2.821366 GCCCACATCTGACAGGCG 60.821 66.667 1.81 0.00 33.18 5.52
836 837 0.253044 TAAGCCCACATCTGACAGGC 59.747 55.000 1.81 0.00 44.20 4.85
837 838 3.287867 AATAAGCCCACATCTGACAGG 57.712 47.619 1.81 0.00 0.00 4.00
838 839 9.896645 ATAATATAATAAGCCCACATCTGACAG 57.103 33.333 0.00 0.00 0.00 3.51
841 842 9.905713 GGAATAATATAATAAGCCCACATCTGA 57.094 33.333 0.00 0.00 0.00 3.27
842 843 9.685276 TGGAATAATATAATAAGCCCACATCTG 57.315 33.333 0.00 0.00 0.00 2.90
843 844 9.686683 GTGGAATAATATAATAAGCCCACATCT 57.313 33.333 0.00 0.00 40.70 2.90
844 845 9.461312 TGTGGAATAATATAATAAGCCCACATC 57.539 33.333 0.00 0.00 44.30 3.06
846 847 9.647918 TTTGTGGAATAATATAATAAGCCCACA 57.352 29.630 0.00 0.00 46.52 4.17
847 848 9.908152 GTTTGTGGAATAATATAATAAGCCCAC 57.092 33.333 0.00 0.00 41.21 4.61
848 849 9.647918 TGTTTGTGGAATAATATAATAAGCCCA 57.352 29.630 0.00 0.00 0.00 5.36
858 859 9.396022 CAAGGAGTACTGTTTGTGGAATAATAT 57.604 33.333 0.00 0.00 0.00 1.28
859 860 8.380099 ACAAGGAGTACTGTTTGTGGAATAATA 58.620 33.333 16.67 0.00 32.90 0.98
860 861 7.174946 CACAAGGAGTACTGTTTGTGGAATAAT 59.825 37.037 26.60 4.44 43.98 1.28
861 862 6.485313 CACAAGGAGTACTGTTTGTGGAATAA 59.515 38.462 26.60 0.00 43.98 1.40
862 863 5.995282 CACAAGGAGTACTGTTTGTGGAATA 59.005 40.000 26.60 0.00 43.98 1.75
863 864 4.821805 CACAAGGAGTACTGTTTGTGGAAT 59.178 41.667 26.60 5.98 43.98 3.01
864 865 4.080807 TCACAAGGAGTACTGTTTGTGGAA 60.081 41.667 30.00 18.99 46.32 3.53
865 866 3.452990 TCACAAGGAGTACTGTTTGTGGA 59.547 43.478 30.00 20.97 46.32 4.02
866 867 3.560068 GTCACAAGGAGTACTGTTTGTGG 59.440 47.826 30.00 19.78 46.32 4.17
868 869 3.131577 TCGTCACAAGGAGTACTGTTTGT 59.868 43.478 13.25 13.25 34.31 2.83
869 870 3.713288 TCGTCACAAGGAGTACTGTTTG 58.287 45.455 0.00 7.25 0.00 2.93
870 871 3.799232 GCTCGTCACAAGGAGTACTGTTT 60.799 47.826 0.00 0.00 39.18 2.83
871 872 2.288273 GCTCGTCACAAGGAGTACTGTT 60.288 50.000 0.00 0.00 39.18 3.16
872 873 1.269998 GCTCGTCACAAGGAGTACTGT 59.730 52.381 0.00 0.00 39.18 3.55
873 874 1.269723 TGCTCGTCACAAGGAGTACTG 59.730 52.381 0.00 0.00 39.18 2.74
874 875 1.617322 TGCTCGTCACAAGGAGTACT 58.383 50.000 0.00 0.00 39.18 2.73
875 876 2.164624 AGATGCTCGTCACAAGGAGTAC 59.835 50.000 0.00 0.00 39.18 2.73
876 877 2.423892 GAGATGCTCGTCACAAGGAGTA 59.576 50.000 0.00 0.00 39.18 2.59
877 878 1.203523 GAGATGCTCGTCACAAGGAGT 59.796 52.381 0.00 0.00 39.18 3.85
878 879 1.919918 GAGATGCTCGTCACAAGGAG 58.080 55.000 0.00 0.00 39.81 3.69
901 902 2.492449 TATCTATGCCGCTGCCTCGC 62.492 60.000 0.00 0.00 36.33 5.03
902 903 0.457509 CTATCTATGCCGCTGCCTCG 60.458 60.000 0.00 0.00 36.33 4.63
903 904 0.739112 GCTATCTATGCCGCTGCCTC 60.739 60.000 0.00 0.00 36.33 4.70
904 905 1.294780 GCTATCTATGCCGCTGCCT 59.705 57.895 0.00 0.00 36.33 4.75
905 906 2.097038 CGCTATCTATGCCGCTGCC 61.097 63.158 0.00 0.00 36.33 4.85
906 907 1.075425 CTCGCTATCTATGCCGCTGC 61.075 60.000 0.00 0.00 38.26 5.25
907 908 1.075425 GCTCGCTATCTATGCCGCTG 61.075 60.000 0.00 0.00 0.00 5.18
908 909 1.214062 GCTCGCTATCTATGCCGCT 59.786 57.895 0.00 0.00 0.00 5.52
909 910 0.459237 ATGCTCGCTATCTATGCCGC 60.459 55.000 0.00 0.00 0.00 6.53
910 911 2.159379 TGTATGCTCGCTATCTATGCCG 60.159 50.000 0.00 0.00 0.00 5.69
911 912 3.443037 CTGTATGCTCGCTATCTATGCC 58.557 50.000 0.00 0.00 0.00 4.40
912 913 3.129462 TCCTGTATGCTCGCTATCTATGC 59.871 47.826 0.00 0.00 0.00 3.14
913 914 4.733230 GCTCCTGTATGCTCGCTATCTATG 60.733 50.000 0.00 0.00 0.00 2.23
914 915 3.380004 GCTCCTGTATGCTCGCTATCTAT 59.620 47.826 0.00 0.00 0.00 1.98
915 916 2.750166 GCTCCTGTATGCTCGCTATCTA 59.250 50.000 0.00 0.00 0.00 1.98
916 917 1.543802 GCTCCTGTATGCTCGCTATCT 59.456 52.381 0.00 0.00 0.00 1.98
917 918 1.543802 AGCTCCTGTATGCTCGCTATC 59.456 52.381 0.00 0.00 33.90 2.08
918 919 1.543802 GAGCTCCTGTATGCTCGCTAT 59.456 52.381 0.87 0.00 44.72 2.97
919 920 0.955178 GAGCTCCTGTATGCTCGCTA 59.045 55.000 0.87 0.00 44.72 4.26
920 921 1.739049 GAGCTCCTGTATGCTCGCT 59.261 57.895 0.87 0.00 44.72 4.93
921 922 4.334837 GAGCTCCTGTATGCTCGC 57.665 61.111 0.87 0.00 44.72 5.03
924 925 0.470833 ATCCCGAGCTCCTGTATGCT 60.471 55.000 8.47 0.00 42.82 3.79
925 926 0.037790 GATCCCGAGCTCCTGTATGC 60.038 60.000 8.47 0.00 0.00 3.14
926 927 1.000283 GTGATCCCGAGCTCCTGTATG 60.000 57.143 8.47 0.00 0.00 2.39
927 928 1.333177 GTGATCCCGAGCTCCTGTAT 58.667 55.000 8.47 0.00 0.00 2.29
928 929 0.033503 TGTGATCCCGAGCTCCTGTA 60.034 55.000 8.47 0.00 0.00 2.74
929 930 0.689080 ATGTGATCCCGAGCTCCTGT 60.689 55.000 8.47 0.00 0.00 4.00
930 931 1.271934 CTATGTGATCCCGAGCTCCTG 59.728 57.143 8.47 0.00 0.00 3.86
931 932 1.626686 CTATGTGATCCCGAGCTCCT 58.373 55.000 8.47 0.00 0.00 3.69
932 933 0.605589 CCTATGTGATCCCGAGCTCC 59.394 60.000 8.47 0.00 0.00 4.70
933 934 0.037790 GCCTATGTGATCCCGAGCTC 60.038 60.000 2.73 2.73 0.00 4.09
934 935 0.760567 TGCCTATGTGATCCCGAGCT 60.761 55.000 0.00 0.00 0.00 4.09
935 936 0.601311 GTGCCTATGTGATCCCGAGC 60.601 60.000 0.00 0.00 0.00 5.03
936 937 1.043816 AGTGCCTATGTGATCCCGAG 58.956 55.000 0.00 0.00 0.00 4.63
937 938 1.496060 AAGTGCCTATGTGATCCCGA 58.504 50.000 0.00 0.00 0.00 5.14
938 939 2.213499 GAAAGTGCCTATGTGATCCCG 58.787 52.381 0.00 0.00 0.00 5.14
939 940 2.213499 CGAAAGTGCCTATGTGATCCC 58.787 52.381 0.00 0.00 0.00 3.85
940 941 2.158957 TCCGAAAGTGCCTATGTGATCC 60.159 50.000 0.00 0.00 0.00 3.36
941 942 3.179443 TCCGAAAGTGCCTATGTGATC 57.821 47.619 0.00 0.00 0.00 2.92
942 943 3.197766 TCTTCCGAAAGTGCCTATGTGAT 59.802 43.478 0.00 0.00 33.95 3.06
943 944 2.565391 TCTTCCGAAAGTGCCTATGTGA 59.435 45.455 0.00 0.00 33.95 3.58
944 945 2.972625 TCTTCCGAAAGTGCCTATGTG 58.027 47.619 0.00 0.00 33.95 3.21
945 946 3.600388 CTTCTTCCGAAAGTGCCTATGT 58.400 45.455 0.00 0.00 33.95 2.29
946 947 2.939103 CCTTCTTCCGAAAGTGCCTATG 59.061 50.000 0.00 0.00 33.95 2.23
947 948 2.092914 CCCTTCTTCCGAAAGTGCCTAT 60.093 50.000 0.00 0.00 33.95 2.57
948 949 1.278127 CCCTTCTTCCGAAAGTGCCTA 59.722 52.381 0.00 0.00 33.95 3.93
949 950 0.036875 CCCTTCTTCCGAAAGTGCCT 59.963 55.000 0.00 0.00 33.95 4.75
950 951 0.250770 ACCCTTCTTCCGAAAGTGCC 60.251 55.000 0.00 0.00 33.95 5.01
951 952 0.875059 CACCCTTCTTCCGAAAGTGC 59.125 55.000 0.00 0.00 33.95 4.40
952 953 2.143925 GACACCCTTCTTCCGAAAGTG 58.856 52.381 0.00 0.00 38.49 3.16
953 954 2.047830 AGACACCCTTCTTCCGAAAGT 58.952 47.619 0.00 0.00 33.95 2.66
954 955 2.841442 AGACACCCTTCTTCCGAAAG 57.159 50.000 0.00 0.00 0.00 2.62
955 956 4.094476 AGATAGACACCCTTCTTCCGAAA 58.906 43.478 0.00 0.00 0.00 3.46
956 957 3.709587 AGATAGACACCCTTCTTCCGAA 58.290 45.455 0.00 0.00 0.00 4.30
957 958 3.383698 AGATAGACACCCTTCTTCCGA 57.616 47.619 0.00 0.00 0.00 4.55
958 959 3.195825 ACAAGATAGACACCCTTCTTCCG 59.804 47.826 0.00 0.00 0.00 4.30
959 960 4.828072 ACAAGATAGACACCCTTCTTCC 57.172 45.455 0.00 0.00 0.00 3.46
960 961 5.409826 CACAACAAGATAGACACCCTTCTTC 59.590 44.000 0.00 0.00 0.00 2.87
961 962 5.308825 CACAACAAGATAGACACCCTTCTT 58.691 41.667 0.00 0.00 0.00 2.52
962 963 4.263068 CCACAACAAGATAGACACCCTTCT 60.263 45.833 0.00 0.00 0.00 2.85
963 964 4.003648 CCACAACAAGATAGACACCCTTC 58.996 47.826 0.00 0.00 0.00 3.46
964 965 3.394606 ACCACAACAAGATAGACACCCTT 59.605 43.478 0.00 0.00 0.00 3.95
965 966 2.979678 ACCACAACAAGATAGACACCCT 59.020 45.455 0.00 0.00 0.00 4.34
966 967 3.418684 ACCACAACAAGATAGACACCC 57.581 47.619 0.00 0.00 0.00 4.61
967 968 3.933332 GCTACCACAACAAGATAGACACC 59.067 47.826 0.00 0.00 0.00 4.16
968 969 3.612860 CGCTACCACAACAAGATAGACAC 59.387 47.826 0.00 0.00 0.00 3.67
969 970 3.368013 CCGCTACCACAACAAGATAGACA 60.368 47.826 0.00 0.00 0.00 3.41
974 975 1.066143 CCTCCGCTACCACAACAAGAT 60.066 52.381 0.00 0.00 0.00 2.40
1085 1117 2.573915 GTGAGAATTCTTGGGGAGGAGT 59.426 50.000 9.87 0.00 0.00 3.85
1129 1161 1.886585 GCTCCGCTTGTCTCTCTCA 59.113 57.895 0.00 0.00 0.00 3.27
1736 1919 4.980805 GCCTTGTCCACGTCGCCA 62.981 66.667 0.00 0.00 0.00 5.69
2196 2491 1.526225 GGCCGCCCAGGAATTAGTC 60.526 63.158 0.00 0.00 45.00 2.59
2256 2774 9.529325 GATGCAGTTCAACATTACACTACTATA 57.471 33.333 0.00 0.00 0.00 1.31
2257 2775 8.260818 AGATGCAGTTCAACATTACACTACTAT 58.739 33.333 0.00 0.00 0.00 2.12
2493 3026 2.793831 GGGATGCACGCCATTAAGT 58.206 52.632 9.44 0.00 33.29 2.24
2513 3046 4.642885 AGAAGAAAACACGATTCCCAAACA 59.357 37.500 0.00 0.00 0.00 2.83
2545 3078 7.099764 GGTGACTATATATGGACCATCACAAG 58.900 42.308 11.17 7.66 37.53 3.16
2554 3087 8.993121 CAAAGATGTTGGTGACTATATATGGAC 58.007 37.037 2.68 0.00 0.00 4.02
2605 3139 1.271543 TGGTCAATGCTTCCAGTCCAG 60.272 52.381 0.00 0.00 0.00 3.86
2738 4602 6.618287 TCAAAATAATTAGGGACATCAGCG 57.382 37.500 0.00 0.00 0.00 5.18
2773 4643 2.428530 AGCATAGATGAACAGAGCGACA 59.571 45.455 0.00 0.00 0.00 4.35
2876 4754 8.893219 TGAAGCTAATTAAGATAGTCATGGTG 57.107 34.615 0.00 0.00 0.00 4.17
2904 4782 8.938801 ATAAGATGCATATCAACATTACCCAA 57.061 30.769 0.00 0.00 35.70 4.12
2905 4783 8.385491 AGATAAGATGCATATCAACATTACCCA 58.615 33.333 0.00 0.00 35.70 4.51
3017 4902 1.276989 CAAAGCAAATGCCATCCCAGT 59.723 47.619 0.94 0.00 43.38 4.00
3351 5240 7.000575 TGCAGCTAAGATACGTGTAAATTTC 57.999 36.000 0.00 0.00 0.00 2.17
3362 5251 7.442364 TCCACAAATAAGATGCAGCTAAGATAC 59.558 37.037 4.15 0.00 0.00 2.24
3507 5508 3.030291 ACAAACTGGGAATGCACTTCAA 58.970 40.909 0.00 0.00 35.41 2.69
3529 5530 3.254166 AGCATGCAGAAGAAACACGATTT 59.746 39.130 21.98 0.00 0.00 2.17
3554 5555 4.508124 GCATGAACTAAACGACTGATAGGG 59.492 45.833 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.