AutoCloner

Multiple sequence alignment - TraesCS1D01G291300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G291300	chr1D	100.000	3062	0	0	1	3062	389488689	389491750	0.000000e+00	5655
1	TraesCS1D01G291300	chr1D	80.939	1469	227	42	607	2053	249755541	249754104	0.000000e+00	1112
2	TraesCS1D01G291300	chr1D	80.687	1455	238	37	616	2053	250070706	250069278	0.000000e+00	1090
3	TraesCS1D01G291300	chr1D	78.388	1476	252	53	615	2052	442798167	442799613	0.000000e+00	896
4	TraesCS1D01G291300	chr1D	76.264	1483	281	49	617	2053	467607383	467605926	0.000000e+00	723
5	TraesCS1D01G291300	chr1D	82.903	310	36	14	2759	3062	389246636	389246338	2.340000e-66	263
6	TraesCS1D01G291300	chr1D	83.810	210	24	5	2551	2760	389246901	389246702	1.120000e-44	191
7	TraesCS1D01G291300	chr1D	89.051	137	11	3	2783	2918	389351010	389350877	1.890000e-37	167
8	TraesCS1D01G291300	chr1D	96.667	60	2	0	2551	2610	389353970	389353911	1.940000e-17	100
9	TraesCS1D01G291300	chr1A	93.015	2348	85	37	593	2911	488097675	488099972	0.000000e+00	3354
10	TraesCS1D01G291300	chr1A	80.221	1451	242	36	621	2053	319447392	319445969	0.000000e+00	1048
11	TraesCS1D01G291300	chr1A	80.041	1453	249	32	616	2052	319889304	319887877	0.000000e+00	1038
12	TraesCS1D01G291300	chr1A	94.737	266	13	1	1	265	488096752	488097017	2.200000e-111	412
13	TraesCS1D01G291300	chr1A	85.328	259	14	12	335	581	488097201	488097447	2.360000e-61	246
14	TraesCS1D01G291300	chr1A	89.610	154	13	2	2912	3062	488100893	488101046	3.120000e-45	193
15	TraesCS1D01G291300	chr1A	74.690	403	69	21	615	1013	320155974	320155601	6.840000e-32	148
16	TraesCS1D01G291300	chr1B	95.260	1941	71	12	582	2510	522744804	522742873	0.000000e+00	3055
17	TraesCS1D01G291300	chr1B	80.273	1465	244	32	607	2053	364504992	364506429	0.000000e+00	1062
18	TraesCS1D01G291300	chr1B	77.492	1475	259	43	615	2038	364423137	364424589	0.000000e+00	817
19	TraesCS1D01G291300	chr1B	90.631	555	34	7	2510	3062	522742761	522742223	0.000000e+00	721
20	TraesCS1D01G291300	chr1B	81.711	596	94	13	1461	2053	364812164	364812747	1.650000e-132	483
21	TraesCS1D01G291300	chr1B	91.882	271	16	6	1	267	522745706	522745438	1.040000e-99	374
22	TraesCS1D01G291300	chr1B	80.000	475	63	25	2460	2918	522837613	522838071	3.810000e-84	322
23	TraesCS1D01G291300	chr1B	91.228	171	6	5	391	556	522745219	522745053	1.100000e-54	224
24	TraesCS1D01G291300	chrUn	77.273	1496	243	72	621	2059	28754123	28752668	0.000000e+00	789
25	TraesCS1D01G291300	chr4A	80.357	336	42	16	17	329	689667257	689666923	1.840000e-57	233
26	TraesCS1D01G291300	chr3A	82.772	267	34	8	1	258	696282615	696282878	8.540000e-56	228
27	TraesCS1D01G291300	chr7A	82.500	240	35	4	7	245	35393586	35393353	1.440000e-48	204
28	TraesCS1D01G291300	chr7A	77.714	350	53	14	1	326	550051191	550050843	1.120000e-44	191
29	TraesCS1D01G291300	chr3B	80.074	271	40	9	1	258	744312698	744312967	4.030000e-44	189
30	TraesCS1D01G291300	chr3D	79.182	269	40	10	1	253	560119531	560119799	4.060000e-39	172
31	TraesCS1D01G291300	chr2A	76.953	256	52	5	4	256	725338648	725338397	4.120000e-29	139

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G291300	chr1D	389488689	389491750	3061	False	5655.00	5655	100.00000	1	3062	1	chr1D.!!$F1	3061
1	TraesCS1D01G291300	chr1D	249754104	249755541	1437	True	1112.00	1112	80.93900	607	2053	1	chr1D.!!$R1	1446
2	TraesCS1D01G291300	chr1D	250069278	250070706	1428	True	1090.00	1090	80.68700	616	2053	1	chr1D.!!$R2	1437
3	TraesCS1D01G291300	chr1D	442798167	442799613	1446	False	896.00	896	78.38800	615	2052	1	chr1D.!!$F2	1437
4	TraesCS1D01G291300	chr1D	467605926	467607383	1457	True	723.00	723	76.26400	617	2053	1	chr1D.!!$R3	1436
5	TraesCS1D01G291300	chr1D	389246338	389246901	563	True	227.00	263	83.35650	2551	3062	2	chr1D.!!$R4	511
6	TraesCS1D01G291300	chr1A	488096752	488101046	4294	False	1051.25	3354	90.67250	1	3062	4	chr1A.!!$F1	3061
7	TraesCS1D01G291300	chr1A	319445969	319447392	1423	True	1048.00	1048	80.22100	621	2053	1	chr1A.!!$R1	1432
8	TraesCS1D01G291300	chr1A	319887877	319889304	1427	True	1038.00	1038	80.04100	616	2052	1	chr1A.!!$R2	1436
9	TraesCS1D01G291300	chr1B	522742223	522745706	3483	True	1093.50	3055	92.25025	1	3062	4	chr1B.!!$R1	3061
10	TraesCS1D01G291300	chr1B	364504992	364506429	1437	False	1062.00	1062	80.27300	607	2053	1	chr1B.!!$F2	1446
11	TraesCS1D01G291300	chr1B	364423137	364424589	1452	False	817.00	817	77.49200	615	2038	1	chr1B.!!$F1	1423
12	TraesCS1D01G291300	chr1B	364812164	364812747	583	False	483.00	483	81.71100	1461	2053	1	chr1B.!!$F3	592
13	TraesCS1D01G291300	chrUn	28752668	28754123	1455	True	789.00	789	77.27300	621	2059	1	chrUn.!!$R1	1438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
309	392	0.593518	TGGATGCGTTTGTTGCAACG	60.594	50.000	23.79	14.37	46.87	4.10	F
589	965	1.128692	GCCTTTGAATTGTCCTCGTCG	59.871	52.381	0.00	0.00	0.00	5.12	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1595	2047	0.249120	CTTGAGGTACGGCATGGTGA	59.751	55.000	0.00	0.00	0.00	4.02	R
2479	2962	1.686052	CAGGAGGTGATCTGCCTACTC	59.314	57.143	15.83	7.21	43.63	2.59	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
219	224	2.174639	CCTTGCATTCCCTACCCATACA	59.825	50.000	0.00	0.00	0.00	2.29
280	286	9.841295	TGTGTTAGATATAATTAGGGTTGAACC	57.159	33.333	5.62	5.62	37.60	3.62
281	287	9.841295	GTGTTAGATATAATTAGGGTTGAACCA	57.159	33.333	17.27	0.00	41.02	3.67
282	288	9.841295	TGTTAGATATAATTAGGGTTGAACCAC	57.159	33.333	17.27	5.72	41.02	4.16
292	374	5.373812	AGGGTTGAACCACTAGAATATGG	57.626	43.478	17.27	0.00	41.02	2.74
298	381	4.100963	TGAACCACTAGAATATGGATGCGT	59.899	41.667	4.21	0.00	39.46	5.24
299	382	4.689612	ACCACTAGAATATGGATGCGTT	57.310	40.909	4.21	0.00	39.46	4.84
300	383	5.036117	ACCACTAGAATATGGATGCGTTT	57.964	39.130	4.21	0.00	39.46	3.60
305	388	4.032703	AGAATATGGATGCGTTTGTTGC	57.967	40.909	0.00	0.00	0.00	4.17
309	392	0.593518	TGGATGCGTTTGTTGCAACG	60.594	50.000	23.79	14.37	46.87	4.10
315	399	1.226435	GTTTGTTGCAACGCACGGA	60.226	52.632	23.79	2.89	38.71	4.69
316	400	1.226435	TTTGTTGCAACGCACGGAC	60.226	52.632	23.79	0.00	38.71	4.79
326	410	2.373540	ACGCACGGACAATTAGCTAA	57.626	45.000	8.99	8.99	0.00	3.09
330	414	4.202080	ACGCACGGACAATTAGCTAATAGA	60.202	41.667	19.14	0.00	0.00	1.98
331	415	4.383052	CGCACGGACAATTAGCTAATAGAG	59.617	45.833	19.14	13.99	0.00	2.43
332	416	5.290386	GCACGGACAATTAGCTAATAGAGT	58.710	41.667	19.14	16.78	0.00	3.24
333	417	6.444633	GCACGGACAATTAGCTAATAGAGTA	58.555	40.000	19.14	0.00	0.00	2.59
337	457	8.910944	ACGGACAATTAGCTAATAGAGTAAGAA	58.089	33.333	19.14	0.00	0.00	2.52
381	507	9.836864	ACATATGCATGTAGAAAGAATTGTAGA	57.163	29.630	10.16	0.00	43.74	2.59
384	510	7.792374	TGCATGTAGAAAGAATTGTAGATCC	57.208	36.000	0.00	0.00	0.00	3.36
385	511	6.479990	TGCATGTAGAAAGAATTGTAGATCCG	59.520	38.462	0.00	0.00	0.00	4.18
386	512	6.480320	GCATGTAGAAAGAATTGTAGATCCGT	59.520	38.462	0.00	0.00	0.00	4.69
387	513	7.517417	GCATGTAGAAAGAATTGTAGATCCGTG	60.517	40.741	0.00	0.00	0.00	4.94
388	514	6.931838	TGTAGAAAGAATTGTAGATCCGTGT	58.068	36.000	0.00	0.00	0.00	4.49
389	515	7.383687	TGTAGAAAGAATTGTAGATCCGTGTT	58.616	34.615	0.00	0.00	0.00	3.32
419	545	2.423185	TGTTTTGCGGGAATGCATCTAG	59.577	45.455	0.00	0.00	45.78	2.43
436	566	4.639135	TCTAGATGACTGGATTGTGACG	57.361	45.455	0.00	0.00	0.00	4.35
437	567	4.270008	TCTAGATGACTGGATTGTGACGA	58.730	43.478	0.00	0.00	0.00	4.20
438	568	4.889995	TCTAGATGACTGGATTGTGACGAT	59.110	41.667	0.00	0.00	0.00	3.73
482	612	2.618709	CAAGAACGGGATAGATTTGGGC	59.381	50.000	0.00	0.00	0.00	5.36
495	625	7.941790	GGATAGATTTGGGCTTCTAGATTTCTT	59.058	37.037	0.00	0.00	0.00	2.52
506	636	4.435137	TCTAGATTTCTTCCAGGAACCCA	58.565	43.478	0.00	0.00	0.00	4.51
589	965	1.128692	GCCTTTGAATTGTCCTCGTCG	59.871	52.381	0.00	0.00	0.00	5.12
591	967	2.412089	CCTTTGAATTGTCCTCGTCGTC	59.588	50.000	0.00	0.00	0.00	4.20
1595	2047	1.716826	GAGGAGAAGATCGACGCGGT	61.717	60.000	12.47	0.00	0.00	5.68
2075	2534	5.966742	AGGAACTGAAAAACCAGCTTATC	57.033	39.130	0.00	0.00	37.18	1.75
2077	2536	6.071320	AGGAACTGAAAAACCAGCTTATCTT	58.929	36.000	0.00	0.00	37.18	2.40
2078	2537	6.207614	AGGAACTGAAAAACCAGCTTATCTTC	59.792	38.462	0.00	0.00	37.18	2.87
2081	2540	7.588497	ACTGAAAAACCAGCTTATCTTCTTT	57.412	32.000	0.00	0.00	37.68	2.52
2082	2541	8.011844	ACTGAAAAACCAGCTTATCTTCTTTT	57.988	30.769	0.00	0.00	37.68	2.27
2171	2633	7.943447	TGTCTACCTAGTTTAAGAGAGAAGTGT	59.057	37.037	0.00	0.00	0.00	3.55
2173	2635	9.364653	TCTACCTAGTTTAAGAGAGAAGTGTTT	57.635	33.333	0.00	0.00	0.00	2.83
2224	2686	3.821033	AGCAAGGAACATTGTTGGAGTAC	59.179	43.478	6.80	0.00	32.56	2.73
2227	2689	4.657814	AGGAACATTGTTGGAGTACCAT	57.342	40.909	6.80	0.00	46.34	3.55
2275	2738	7.050377	TGCCAATTGTAATCTTTTTGTTTCCA	58.950	30.769	4.43	0.00	0.00	3.53
2316	2779	1.564348	CCTAAGTTACCCATGGGCAGT	59.436	52.381	31.73	17.60	39.32	4.40
2450	2919	8.326680	TGTATAACACTAGTTTTTAGGTTGCC	57.673	34.615	0.00	0.00	39.15	4.52
2463	2932	8.795513	GTTTTTAGGTTGCCTGTAATTTACCTA	58.204	33.333	4.17	0.00	37.24	3.08
2542	3137	9.826574	AAAATCATACATTTTCCATTCATCAGG	57.173	29.630	0.00	0.00	0.00	3.86
2683	3280	5.016051	AGGTATGCTCTACATCAACACAG	57.984	43.478	0.00	0.00	40.38	3.66
2733	3330	0.817654	TGTATGCCAGTGAGAGGTCG	59.182	55.000	0.00	0.00	0.00	4.79
2777	3442	6.765512	AGCATTTAACAAGATAAGAGAGCTCC	59.234	38.462	10.93	1.70	0.00	4.70
2780	3445	9.474920	CATTTAACAAGATAAGAGAGCTCCTAG	57.525	37.037	10.93	0.00	0.00	3.02
2861	3528	6.153067	ACAAAACGAAACATGTCAGAACAAA	58.847	32.000	0.00	0.00	39.30	2.83
2862	3529	6.642950	ACAAAACGAAACATGTCAGAACAAAA	59.357	30.769	0.00	0.00	39.30	2.44
2904	3571	9.816354	AACACTTTTACAAAGAACATAAGCATT	57.184	25.926	3.24	0.00	0.00	3.56
2921	4508	8.781196	CATAAGCATTATCTCTTGCAACTACAT	58.219	33.333	0.00	0.00	39.78	2.29
3000	4588	4.101430	AGAACAAGCCCAAAATTGTCACAT	59.899	37.500	0.00	0.00	38.66	3.21
3010	4600	7.418942	GCCCAAAATTGTCACATATTCCCTAAT	60.419	37.037	0.00	0.00	0.00	1.73
3035	4625	3.429492	AGAGCTCTTGTCTCACAGATGA	58.571	45.455	11.45	0.00	33.15	2.92
3036	4626	3.831333	AGAGCTCTTGTCTCACAGATGAA	59.169	43.478	11.45	0.00	33.30	2.57
3050	4640	3.817647	ACAGATGAAACCTTCAACTCTGC	59.182	43.478	15.20	0.00	44.68	4.26

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
60	62	6.546972	TGTTAATGCAACACGTGATTTCTA	57.453	33.333	25.01	3.50	42.29	2.10
86	91	7.874016	TGTGAATTTGGGAAGATTTGATTTGAG	59.126	33.333	0.00	0.00	0.00	3.02
120	125	8.287439	TGTATGTGAAGAAAAGGAAAGTTTGA	57.713	30.769	0.00	0.00	0.00	2.69
139	144	7.060383	TGATTTGATTTGGGTGTTTGTATGT	57.940	32.000	0.00	0.00	0.00	2.29
197	202	0.557729	ATGGGTAGGGAATGCAAGGG	59.442	55.000	0.00	0.00	0.00	3.95
267	273	7.349859	TCCATATTCTAGTGGTTCAACCCTAAT	59.650	37.037	3.42	1.92	37.50	1.73
268	274	6.674861	TCCATATTCTAGTGGTTCAACCCTAA	59.325	38.462	3.42	0.00	37.50	2.69
269	275	6.206787	TCCATATTCTAGTGGTTCAACCCTA	58.793	40.000	3.42	4.46	37.50	3.53
270	276	5.036916	TCCATATTCTAGTGGTTCAACCCT	58.963	41.667	3.42	3.40	37.50	4.34
271	277	5.367945	TCCATATTCTAGTGGTTCAACCC	57.632	43.478	3.42	0.00	37.50	4.11
272	278	5.239525	GCATCCATATTCTAGTGGTTCAACC	59.760	44.000	0.00	0.00	39.22	3.77
275	281	4.100963	ACGCATCCATATTCTAGTGGTTCA	59.899	41.667	0.00	0.00	36.84	3.18
276	282	4.632153	ACGCATCCATATTCTAGTGGTTC	58.368	43.478	0.00	0.00	36.84	3.62
278	284	4.689612	AACGCATCCATATTCTAGTGGT	57.310	40.909	0.00	0.00	36.84	4.16
279	285	4.816385	ACAAACGCATCCATATTCTAGTGG	59.184	41.667	0.00	0.00	36.82	4.00
280	286	5.991328	ACAAACGCATCCATATTCTAGTG	57.009	39.130	0.00	0.00	0.00	2.74
281	287	5.220854	GCAACAAACGCATCCATATTCTAGT	60.221	40.000	0.00	0.00	0.00	2.57
282	288	5.207768	GCAACAAACGCATCCATATTCTAG	58.792	41.667	0.00	0.00	0.00	2.43
283	289	4.637977	TGCAACAAACGCATCCATATTCTA	59.362	37.500	0.00	0.00	33.55	2.10
287	369	3.510719	GTTGCAACAAACGCATCCATAT	58.489	40.909	24.52	0.00	39.58	1.78
298	381	1.226435	GTCCGTGCGTTGCAACAAA	60.226	52.632	28.01	13.32	41.47	2.83
299	382	1.923227	TTGTCCGTGCGTTGCAACAA	61.923	50.000	28.01	13.69	41.47	2.83
300	383	1.719725	ATTGTCCGTGCGTTGCAACA	61.720	50.000	28.01	8.05	41.47	3.33
305	388	0.796312	AGCTAATTGTCCGTGCGTTG	59.204	50.000	0.00	0.00	0.00	4.10
309	392	5.290386	ACTCTATTAGCTAATTGTCCGTGC	58.710	41.667	23.47	0.00	0.00	5.34
348	468	8.978874	TCTTTCTACATGCATATGTATTTGGT	57.021	30.769	3.23	2.42	45.90	3.67
358	478	9.494271	GGATCTACAATTCTTTCTACATGCATA	57.506	33.333	0.00	0.00	0.00	3.14
389	515	2.699954	TCCCGCAAAACAAAGCAAAAA	58.300	38.095	0.00	0.00	0.00	1.94
395	521	1.863267	TGCATTCCCGCAAAACAAAG	58.137	45.000	0.00	0.00	39.45	2.77
419	545	3.308053	CACATCGTCACAATCCAGTCATC	59.692	47.826	0.00	0.00	0.00	2.92
437	567	2.102578	GGCAAGATGTAAAGGGCACAT	58.897	47.619	0.00	0.00	39.31	3.21
438	568	1.544724	GGCAAGATGTAAAGGGCACA	58.455	50.000	0.00	0.00	0.00	4.57
469	599	7.457561	AGAAATCTAGAAGCCCAAATCTATCC	58.542	38.462	0.00	0.00	0.00	2.59
482	612	5.045578	TGGGTTCCTGGAAGAAATCTAGAAG	60.046	44.000	9.92	0.00	38.88	2.85
495	625	0.105913	GTGGGTTTTGGGTTCCTGGA	60.106	55.000	0.00	0.00	0.00	3.86
506	636	3.094484	TGAAGAGTTGTGGTGGGTTTT	57.906	42.857	0.00	0.00	0.00	2.43
1560	2012	3.742248	CTCCGAGACCTCCCCCTCC	62.742	73.684	0.00	0.00	0.00	4.30
1565	2017	0.753848	CTTCTCCTCCGAGACCTCCC	60.754	65.000	0.00	0.00	45.01	4.30
1595	2047	0.249120	CTTGAGGTACGGCATGGTGA	59.751	55.000	0.00	0.00	0.00	4.02
2096	2555	7.012327	ACACACGCAAACATCTTATATAATGCT	59.988	33.333	12.33	1.22	0.00	3.79
2100	2559	7.835634	TCACACACGCAAACATCTTATATAA	57.164	32.000	0.00	0.00	0.00	0.98
2103	2562	6.735678	AATCACACACGCAAACATCTTATA	57.264	33.333	0.00	0.00	0.00	0.98
2106	2565	3.988379	AATCACACACGCAAACATCTT	57.012	38.095	0.00	0.00	0.00	2.40
2107	2566	4.314961	TCTAATCACACACGCAAACATCT	58.685	39.130	0.00	0.00	0.00	2.90
2108	2567	4.661993	TCTAATCACACACGCAAACATC	57.338	40.909	0.00	0.00	0.00	3.06
2109	2568	4.694982	TGATCTAATCACACACGCAAACAT	59.305	37.500	0.00	0.00	33.59	2.71
2110	2569	4.061596	TGATCTAATCACACACGCAAACA	58.938	39.130	0.00	0.00	33.59	2.83
2111	2570	4.661993	TGATCTAATCACACACGCAAAC	57.338	40.909	0.00	0.00	33.59	2.93
2175	2637	7.721399	AGCTCTAAACATTTCTCTCTGGAAAAA	59.279	33.333	0.00	0.00	38.46	1.94
2180	2642	5.752955	GCTAGCTCTAAACATTTCTCTCTGG	59.247	44.000	7.70	0.00	0.00	3.86
2224	2686	7.807977	ACCTAGACACTGCATTATAAAATGG	57.192	36.000	0.00	0.00	42.39	3.16
2227	2689	7.362574	GGCAAACCTAGACACTGCATTATAAAA	60.363	37.037	0.00	0.00	34.66	1.52
2463	2932	7.665559	TCTGCCTACTCTGAAAATTGTGTTAAT	59.334	33.333	0.00	0.00	0.00	1.40
2479	2962	1.686052	CAGGAGGTGATCTGCCTACTC	59.314	57.143	15.83	7.21	43.63	2.59
2622	3219	9.752228	TTATCTGCCATATCCAATATAAAGCAA	57.248	29.630	0.00	0.00	29.94	3.91
2683	3280	4.751060	TGACAGTATTGGTTATCACGGTC	58.249	43.478	0.00	0.00	36.86	4.79
2733	3330	5.880054	TGCTTCTGCATAACTAGAAAACC	57.120	39.130	0.00	0.00	45.31	3.27
2761	3358	6.462347	GGAAACCTAGGAGCTCTCTTATCTTG	60.462	46.154	17.98	1.98	0.00	3.02
2861	3528	5.351948	AGTGTTATTGCCCAAAGTGTTTT	57.648	34.783	0.00	0.00	0.00	2.43
2862	3529	5.351948	AAGTGTTATTGCCCAAAGTGTTT	57.648	34.783	0.00	0.00	0.00	2.83
2904	3571	6.042777	CGGAGAAATGTAGTTGCAAGAGATA	58.957	40.000	0.00	0.00	0.00	1.98
2921	4508	9.098355	CAGATGTTCTTACATATTTCGGAGAAA	57.902	33.333	0.00	0.00	44.90	2.52
3000	4588	9.830186	AGACAAGAGCTCTTATATTAGGGAATA	57.170	33.333	28.02	0.00	34.28	1.75
3010	4600	6.830838	TCATCTGTGAGACAAGAGCTCTTATA	59.169	38.462	28.02	10.21	34.28	0.98

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.