Multiple sequence alignment - TraesCS1D01G291000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G291000 chr1D 100.000 2923 0 0 1 2923 389243640 389246562 0.000000e+00 5398.0
1 TraesCS1D01G291000 chr1D 89.914 1735 114 26 707 2400 389495040 389493326 0.000000e+00 2178.0
2 TraesCS1D01G291000 chr1D 85.363 1503 151 37 1167 2636 390856366 390857832 0.000000e+00 1493.0
3 TraesCS1D01G291000 chr1D 85.897 1248 103 35 2 1231 390855173 390856365 0.000000e+00 1262.0
4 TraesCS1D01G291000 chr1D 85.033 1196 121 26 1226 2398 389321786 389322946 0.000000e+00 1164.0
5 TraesCS1D01G291000 chr1D 98.993 596 6 0 1 596 389525557 389524962 0.000000e+00 1068.0
6 TraesCS1D01G291000 chr1D 89.137 626 49 6 535 1151 389262901 389262286 0.000000e+00 761.0
7 TraesCS1D01G291000 chr1D 85.421 439 43 15 2497 2923 389491949 389491520 1.240000e-118 436.0
8 TraesCS1D01G291000 chr1D 90.141 284 24 2 2524 2807 389323282 389323561 1.660000e-97 366.0
9 TraesCS1D01G291000 chr1D 82.891 339 16 21 2 322 389263711 389263397 1.730000e-67 267.0
10 TraesCS1D01G291000 chr1D 72.736 1104 169 74 27 1041 390581386 390580326 1.740000e-62 250.0
11 TraesCS1D01G291000 chr1D 72.816 1122 159 83 2 1041 390409722 390408665 6.260000e-62 248.0
12 TraesCS1D01G291000 chr1D 98.485 132 2 0 592 723 389519824 389519693 1.750000e-57 233.0
13 TraesCS1D01G291000 chr1D 90.395 177 16 1 2631 2807 390861600 390861775 6.300000e-57 231.0
14 TraesCS1D01G291000 chr1D 75.120 209 40 6 846 1042 389797201 389797409 1.440000e-13 87.9
15 TraesCS1D01G291000 chr1B 88.952 3014 221 67 1 2922 522739461 522742454 0.000000e+00 3618.0
16 TraesCS1D01G291000 chr1B 87.300 2441 214 47 2 2400 522841178 522838792 0.000000e+00 2702.0
17 TraesCS1D01G291000 chr1B 89.825 285 24 3 2524 2807 522838425 522838145 7.700000e-96 361.0
18 TraesCS1D01G291000 chr1B 73.559 1093 155 76 26 1032 523207849 523208893 7.920000e-76 294.0
19 TraesCS1D01G291000 chr1B 74.102 529 107 21 511 1033 522363202 522363706 1.070000e-44 191.0
20 TraesCS1D01G291000 chr1B 75.403 496 57 40 26 499 523338133 523338585 2.310000e-41 180.0
21 TraesCS1D01G291000 chr1A 91.585 1022 54 15 20 1018 488104013 488103001 0.000000e+00 1382.0
22 TraesCS1D01G291000 chr1A 83.602 1177 122 27 1549 2677 488102304 488101151 0.000000e+00 1038.0
23 TraesCS1D01G291000 chr1A 84.025 1133 108 35 1553 2650 488213972 488212878 0.000000e+00 1022.0
24 TraesCS1D01G291000 chr1A 92.773 595 37 3 964 1552 488103000 488102406 0.000000e+00 856.0
25 TraesCS1D01G291000 chr1A 74.091 880 146 48 192 1033 488071524 488072359 1.330000e-73 287.0
26 TraesCS1D01G291000 chr1A 71.756 1048 183 72 45 1042 488112090 488111106 1.070000e-44 191.0
27 TraesCS1D01G291000 chr1A 73.019 467 88 27 1629 2065 488073045 488073503 2.360000e-26 130.0
28 TraesCS1D01G291000 chr3A 85.294 714 76 18 1415 2108 730738704 730739408 0.000000e+00 710.0
29 TraesCS1D01G291000 chr3A 84.584 733 89 10 694 1418 730737927 730738643 0.000000e+00 706.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G291000 chr1D 389243640 389246562 2922 False 5398.000000 5398 100.000000 1 2923 1 chr1D.!!$F1 2922
1 TraesCS1D01G291000 chr1D 389491520 389495040 3520 True 1307.000000 2178 87.667500 707 2923 2 chr1D.!!$R6 2216
2 TraesCS1D01G291000 chr1D 389524962 389525557 595 True 1068.000000 1068 98.993000 1 596 1 chr1D.!!$R2 595
3 TraesCS1D01G291000 chr1D 390855173 390861775 6602 False 995.333333 1493 87.218333 2 2807 3 chr1D.!!$F4 2805
4 TraesCS1D01G291000 chr1D 389321786 389323561 1775 False 765.000000 1164 87.587000 1226 2807 2 chr1D.!!$F3 1581
5 TraesCS1D01G291000 chr1D 389262286 389263711 1425 True 514.000000 761 86.014000 2 1151 2 chr1D.!!$R5 1149
6 TraesCS1D01G291000 chr1D 390580326 390581386 1060 True 250.000000 250 72.736000 27 1041 1 chr1D.!!$R4 1014
7 TraesCS1D01G291000 chr1D 390408665 390409722 1057 True 248.000000 248 72.816000 2 1041 1 chr1D.!!$R3 1039
8 TraesCS1D01G291000 chr1B 522739461 522742454 2993 False 3618.000000 3618 88.952000 1 2922 1 chr1B.!!$F2 2921
9 TraesCS1D01G291000 chr1B 522838145 522841178 3033 True 1531.500000 2702 88.562500 2 2807 2 chr1B.!!$R1 2805
10 TraesCS1D01G291000 chr1B 523207849 523208893 1044 False 294.000000 294 73.559000 26 1032 1 chr1B.!!$F3 1006
11 TraesCS1D01G291000 chr1A 488101151 488104013 2862 True 1092.000000 1382 89.320000 20 2677 3 chr1A.!!$R3 2657
12 TraesCS1D01G291000 chr1A 488212878 488213972 1094 True 1022.000000 1022 84.025000 1553 2650 1 chr1A.!!$R2 1097
13 TraesCS1D01G291000 chr1A 488071524 488073503 1979 False 208.500000 287 73.555000 192 2065 2 chr1A.!!$F1 1873
14 TraesCS1D01G291000 chr3A 730737927 730739408 1481 False 708.000000 710 84.939000 694 2108 2 chr3A.!!$F1 1414

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 439 0.243907 CTCGTCGACCTCAACACCAT 59.756 55.0 10.58 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2165 3010 1.507562 TGTGCATACAGTCAACCACG 58.492 50.0 0.0 0.0 31.91 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
356 439 0.243907 CTCGTCGACCTCAACACCAT 59.756 55.000 10.58 0.00 0.00 3.55
695 1073 1.650912 CGGATAGGTACGTGGTCGG 59.349 63.158 0.00 0.00 41.85 4.79
1085 1526 2.287368 GGTGCGTGATCCTTTCGTTTTT 60.287 45.455 0.00 0.00 0.00 1.94
1174 1636 2.187707 GCTATGTTCAAATTGCTGCCG 58.812 47.619 0.00 0.00 0.00 5.69
1433 2050 7.823745 ATCCAAAGTTTACTGCCCTATAATG 57.176 36.000 0.00 0.00 0.00 1.90
1438 2055 9.131791 CAAAGTTTACTGCCCTATAATGGTTAT 57.868 33.333 0.00 0.00 0.00 1.89
1443 2060 9.747898 TTTACTGCCCTATAATGGTTATATTGG 57.252 33.333 0.00 0.00 0.00 3.16
1447 2064 7.172342 TGCCCTATAATGGTTATATTGGACAC 58.828 38.462 8.47 0.00 30.21 3.67
1489 2167 5.911752 ACACCAACTGCATTTGTATTGAAA 58.088 33.333 14.83 0.00 0.00 2.69
1679 2485 7.443272 TGCATTGGTTATGAGATTGTCTATCAG 59.557 37.037 0.00 0.00 36.26 2.90
1813 2630 6.703165 CACATATACTGCTCTTGTTGCTCATA 59.297 38.462 0.00 0.00 0.00 2.15
1908 2735 0.391130 GGCAGACATACTGGTTCGCA 60.391 55.000 0.00 0.00 45.82 5.10
1919 2746 3.674997 ACTGGTTCGCATAGACAAATGT 58.325 40.909 0.00 0.00 0.00 2.71
2099 2944 3.492421 ACTTGCACAAACAACAGAGTG 57.508 42.857 0.00 0.00 35.19 3.51
2125 2970 5.449041 CGGTCATGTTTCCAAATCACTATGG 60.449 44.000 0.00 0.00 38.09 2.74
2188 3073 4.229096 GTGGTTGACTGTATGCACAAATG 58.771 43.478 0.00 0.00 33.22 2.32
2214 3099 5.104982 TGGCTGATTACATGACATGACACTA 60.105 40.000 22.19 0.96 0.00 2.74
2228 3113 7.884877 TGACATGACACTATCTTTTCTCCAATT 59.115 33.333 0.00 0.00 0.00 2.32
2245 3130 8.718102 TCTCCAATTATACTGCACTTTTAGAC 57.282 34.615 0.00 0.00 0.00 2.59
2246 3131 8.318412 TCTCCAATTATACTGCACTTTTAGACA 58.682 33.333 0.00 0.00 0.00 3.41
2290 3193 8.274322 TGAATATGTTGGGAGTAGTCAATGAAT 58.726 33.333 0.00 0.00 0.00 2.57
2305 3208 1.517694 GAATCGGTAGCACGGCGAA 60.518 57.895 16.62 0.00 0.00 4.70
2310 3213 1.821241 CGGTAGCACGGCGAATGATG 61.821 60.000 16.62 0.95 0.00 3.07
2333 3236 5.885912 TGTGGCTTCTACTTCTTTTTGACTT 59.114 36.000 0.00 0.00 0.00 3.01
2334 3237 7.051623 TGTGGCTTCTACTTCTTTTTGACTTA 58.948 34.615 0.00 0.00 0.00 2.24
2400 3434 8.185505 CAGAGTAGTATTACCTTGTCTGAACTC 58.814 40.741 6.56 0.00 33.49 3.01
2423 3627 3.393426 TTACCCGGTCTGACTTATCCT 57.607 47.619 7.85 0.00 0.00 3.24
2430 3634 4.022762 CCGGTCTGACTTATCCTAGACATG 60.023 50.000 7.85 0.00 40.91 3.21
2476 3680 3.385755 GCCTGCCTTTTCACCATGATAAT 59.614 43.478 0.00 0.00 0.00 1.28
2491 3697 7.703621 CACCATGATAATGATTTGTCTTTCACC 59.296 37.037 0.00 0.00 0.00 4.02
2504 5012 5.734720 TGTCTTTCACCAGTCAATATCCTC 58.265 41.667 0.00 0.00 0.00 3.71
2542 5206 7.040201 ACAAATTATGACTGAACTGAAGCATGT 60.040 33.333 0.00 0.00 0.00 3.21
2572 5236 6.537301 TGCTATTATTTCTTACCAAGTGACCG 59.463 38.462 0.00 0.00 0.00 4.79
2590 5270 7.701445 AGTGACCGTACTGTATATTGACTTAC 58.299 38.462 0.00 0.00 0.00 2.34
2610 5290 3.663025 ACCACCAAAATTGCAATGCTAC 58.337 40.909 13.82 0.00 0.00 3.58
2707 9161 7.060383 TGCAGATTCCTTAAATTTGACCAAA 57.940 32.000 0.00 0.00 32.49 3.28
2738 9192 2.740055 GTGGCACCTGCGAGACAG 60.740 66.667 6.29 0.00 46.77 3.51
2756 9211 4.410555 AGACAGGAGCTCTTATTTTAGGGG 59.589 45.833 14.64 0.00 0.00 4.79
2781 9236 0.961019 TGTGACAATTCTGGGCTTGC 59.039 50.000 0.00 0.00 0.00 4.01
2787 9242 2.967887 ACAATTCTGGGCTTGCTCTTTT 59.032 40.909 0.00 0.00 0.00 2.27
2811 9266 5.221481 TGGCTGATGCAATTCTCTTTGAAAA 60.221 36.000 0.00 0.00 41.91 2.29
2813 9268 5.347907 GCTGATGCAATTCTCTTTGAAAAGG 59.652 40.000 0.00 0.00 37.40 3.11
2814 9269 6.653526 TGATGCAATTCTCTTTGAAAAGGA 57.346 33.333 0.00 0.00 38.29 3.36
2815 9270 7.235935 TGATGCAATTCTCTTTGAAAAGGAT 57.764 32.000 0.00 0.00 38.29 3.24
2816 9271 7.318141 TGATGCAATTCTCTTTGAAAAGGATC 58.682 34.615 0.00 0.00 38.98 3.36
2818 9273 6.684686 TGCAATTCTCTTTGAAAAGGATCAG 58.315 36.000 3.08 0.00 38.29 2.90
2819 9274 6.491062 TGCAATTCTCTTTGAAAAGGATCAGA 59.509 34.615 3.08 0.00 38.29 3.27
2820 9275 7.014518 TGCAATTCTCTTTGAAAAGGATCAGAA 59.985 33.333 3.08 5.35 38.29 3.02
2821 9276 7.869429 GCAATTCTCTTTGAAAAGGATCAGAAA 59.131 33.333 3.08 0.00 38.29 2.52
2822 9277 9.924650 CAATTCTCTTTGAAAAGGATCAGAAAT 57.075 29.630 3.08 0.00 38.29 2.17
2824 9279 7.693969 TCTCTTTGAAAAGGATCAGAAATCC 57.306 36.000 3.08 0.00 36.67 3.01
2826 9281 7.725397 TCTCTTTGAAAAGGATCAGAAATCCAA 59.275 33.333 6.82 0.00 40.61 3.53
2827 9282 7.661040 TCTTTGAAAAGGATCAGAAATCCAAC 58.339 34.615 6.82 0.00 40.61 3.77
2829 9284 7.601705 TTGAAAAGGATCAGAAATCCAACTT 57.398 32.000 6.82 0.00 40.61 2.66
2831 9286 8.704849 TGAAAAGGATCAGAAATCCAACTTTA 57.295 30.769 6.82 0.00 40.61 1.85
2832 9287 8.576442 TGAAAAGGATCAGAAATCCAACTTTAC 58.424 33.333 6.82 0.71 40.61 2.01
2833 9288 8.712228 AAAAGGATCAGAAATCCAACTTTACT 57.288 30.769 6.82 0.00 40.61 2.24
2834 9289 8.712228 AAAGGATCAGAAATCCAACTTTACTT 57.288 30.769 6.82 0.00 40.61 2.24
2836 9291 6.151817 AGGATCAGAAATCCAACTTTACTTGC 59.848 38.462 6.82 0.00 40.61 4.01
2843 9304 3.537580 TCCAACTTTACTTGCGAGTTGT 58.462 40.909 12.97 6.59 45.39 3.32
2844 9305 3.311322 TCCAACTTTACTTGCGAGTTGTG 59.689 43.478 12.97 5.24 45.39 3.33
2856 9317 2.200067 CGAGTTGTGAGAGATCATGCC 58.800 52.381 0.00 0.00 0.00 4.40
2861 9322 3.397849 TGTGAGAGATCATGCCTATGC 57.602 47.619 0.00 0.00 34.21 3.14
2873 9334 7.504911 AGATCATGCCTATGCTCTTTGTAAAAT 59.495 33.333 0.00 0.00 36.62 1.82
2874 9335 6.798482 TCATGCCTATGCTCTTTGTAAAATG 58.202 36.000 0.00 0.00 38.71 2.32
2875 9336 6.377996 TCATGCCTATGCTCTTTGTAAAATGT 59.622 34.615 0.00 0.00 38.71 2.71
2877 9338 7.695480 TGCCTATGCTCTTTGTAAAATGTTA 57.305 32.000 0.00 0.00 38.71 2.41
2880 9341 9.023967 GCCTATGCTCTTTGTAAAATGTTAATG 57.976 33.333 0.00 0.00 33.53 1.90
2881 9342 9.023967 CCTATGCTCTTTGTAAAATGTTAATGC 57.976 33.333 0.00 0.00 0.00 3.56
2884 9345 6.014669 TGCTCTTTGTAAAATGTTAATGCCCT 60.015 34.615 0.00 0.00 0.00 5.19
2885 9346 6.873605 GCTCTTTGTAAAATGTTAATGCCCTT 59.126 34.615 0.00 0.00 0.00 3.95
2890 9353 9.482627 TTTGTAAAATGTTAATGCCCTTAAGTG 57.517 29.630 0.97 0.00 29.97 3.16
2916 9379 4.351192 AGTTCTGACATGTTTCGTTTTGC 58.649 39.130 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
695 1073 2.410053 CGACTGCTTTTACTGAGCTGAC 59.590 50.000 9.47 3.43 40.30 3.51
1085 1526 1.103803 GTAGGTCTCGTCATCCAGCA 58.896 55.000 0.00 0.00 0.00 4.41
1174 1636 4.210331 AGGTTGGCATTGAATGGATCTAC 58.790 43.478 7.35 0.00 0.00 2.59
1433 2050 8.671028 ACAAACTAAATCGTGTCCAATATAACC 58.329 33.333 0.00 0.00 0.00 2.85
1489 2167 7.060383 AGATATCGTCACATCCTTCAGAAAT 57.940 36.000 0.00 0.00 0.00 2.17
1569 2370 7.107639 AGGTTAAAAACACTGCTAACAATGT 57.892 32.000 0.00 0.00 38.01 2.71
1608 2413 1.700955 AGCAATGCCAGATTCCATCC 58.299 50.000 0.00 0.00 0.00 3.51
1610 2415 3.393609 TCTCTAGCAATGCCAGATTCCAT 59.606 43.478 3.49 0.00 0.00 3.41
1649 2454 6.832384 AGACAATCTCATAACCAATGCAATCT 59.168 34.615 0.00 0.00 35.38 2.40
1908 2735 7.972832 TTCCGTTTGTCTAACATTTGTCTAT 57.027 32.000 0.00 0.00 36.50 1.98
1949 2776 7.282901 AGTTATTTAAGAGAGAGTACCGGAGAC 59.717 40.741 9.46 5.68 0.00 3.36
2099 2944 3.502211 AGTGATTTGGAAACATGACCGAC 59.498 43.478 0.00 0.00 42.32 4.79
2125 2970 7.377766 TGAACAATTAAGATAACCAGCTCAC 57.622 36.000 0.00 0.00 0.00 3.51
2161 3006 2.224185 TGCATACAGTCAACCACGAGTT 60.224 45.455 0.00 0.00 40.16 3.01
2163 3008 1.726791 GTGCATACAGTCAACCACGAG 59.273 52.381 0.00 0.00 0.00 4.18
2165 3010 1.507562 TGTGCATACAGTCAACCACG 58.492 50.000 0.00 0.00 31.91 4.94
2168 3013 3.255642 ACCATTTGTGCATACAGTCAACC 59.744 43.478 0.00 0.00 38.23 3.77
2169 3014 4.229096 CACCATTTGTGCATACAGTCAAC 58.771 43.478 0.00 0.00 38.34 3.18
2170 3015 3.255395 CCACCATTTGTGCATACAGTCAA 59.745 43.478 0.00 0.00 44.01 3.18
2171 3016 2.819019 CCACCATTTGTGCATACAGTCA 59.181 45.455 0.00 0.00 44.01 3.41
2174 3059 1.820519 AGCCACCATTTGTGCATACAG 59.179 47.619 0.00 0.00 44.01 2.74
2188 3073 3.313526 GTCATGTCATGTAATCAGCCACC 59.686 47.826 12.54 0.00 0.00 4.61
2214 3099 8.814038 AAGTGCAGTATAATTGGAGAAAAGAT 57.186 30.769 0.00 0.00 0.00 2.40
2278 3163 3.486108 CGTGCTACCGATTCATTGACTAC 59.514 47.826 0.00 0.00 0.00 2.73
2290 3193 2.011741 ATCATTCGCCGTGCTACCGA 62.012 55.000 0.00 0.00 0.00 4.69
2305 3208 6.716628 TCAAAAAGAAGTAGAAGCCACATCAT 59.283 34.615 0.00 0.00 0.00 2.45
2310 3213 6.378710 AAGTCAAAAAGAAGTAGAAGCCAC 57.621 37.500 0.00 0.00 0.00 5.01
2333 3236 5.706833 TGAAGACAGTACCGGCGATTATATA 59.293 40.000 9.30 0.00 0.00 0.86
2334 3237 4.521639 TGAAGACAGTACCGGCGATTATAT 59.478 41.667 9.30 0.00 0.00 0.86
2400 3434 3.244112 GGATAAGTCAGACCGGGTAATGG 60.244 52.174 6.32 0.00 0.00 3.16
2423 3627 6.313519 AGCCTTGTCCTAATTTCATGTCTA 57.686 37.500 0.00 0.00 0.00 2.59
2430 3634 6.975197 GCATCTTTTAGCCTTGTCCTAATTTC 59.025 38.462 0.00 0.00 0.00 2.17
2476 3680 7.121168 GGATATTGACTGGTGAAAGACAAATCA 59.879 37.037 0.00 0.00 35.89 2.57
2491 3697 9.941664 GTTGATAACATTTGAGGATATTGACTG 57.058 33.333 0.00 0.00 0.00 3.51
2522 5030 4.154737 GCAACATGCTTCAGTTCAGTCATA 59.845 41.667 0.00 0.00 40.96 2.15
2542 5206 8.243426 CACTTGGTAAGAAATAATAGCAAGCAA 58.757 33.333 19.05 0.79 46.10 3.91
2554 5218 5.221581 ACAGTACGGTCACTTGGTAAGAAAT 60.222 40.000 0.00 0.00 0.00 2.17
2555 5219 4.099881 ACAGTACGGTCACTTGGTAAGAAA 59.900 41.667 0.00 0.00 0.00 2.52
2556 5220 3.638160 ACAGTACGGTCACTTGGTAAGAA 59.362 43.478 0.00 0.00 0.00 2.52
2572 5236 9.439500 TTTTGGTGGTAAGTCAATATACAGTAC 57.561 33.333 0.00 0.00 0.00 2.73
2590 5270 3.002102 GGTAGCATTGCAATTTTGGTGG 58.998 45.455 9.83 0.00 0.00 4.61
2610 5290 3.931578 CTTCTGTTGAAGGACTACTGGG 58.068 50.000 0.00 0.00 44.33 4.45
2668 9121 5.163713 GGAATCTGCAAGGCAAAGTAGTAAG 60.164 44.000 0.00 0.00 38.41 2.34
2707 9161 2.024414 GTGCCACCTTCAACTCTGTTT 58.976 47.619 0.00 0.00 0.00 2.83
2731 9185 5.285651 CCTAAAATAAGAGCTCCTGTCTCG 58.714 45.833 10.93 0.00 35.79 4.04
2738 9192 6.488344 CAGAATTCCCCTAAAATAAGAGCTCC 59.512 42.308 10.93 0.00 0.00 4.70
2756 9211 3.760684 AGCCCAGAATTGTCACAGAATTC 59.239 43.478 0.00 0.00 39.25 2.17
2781 9236 4.158025 AGAGAATTGCATCAGCCAAAAGAG 59.842 41.667 0.00 0.00 41.13 2.85
2787 9242 3.423749 TCAAAGAGAATTGCATCAGCCA 58.576 40.909 0.00 0.00 41.13 4.75
2811 9266 6.151817 GCAAGTAAAGTTGGATTTCTGATCCT 59.848 38.462 6.61 0.00 38.95 3.24
2813 9268 6.024049 CGCAAGTAAAGTTGGATTTCTGATC 58.976 40.000 0.03 0.00 0.00 2.92
2814 9269 5.705441 TCGCAAGTAAAGTTGGATTTCTGAT 59.295 36.000 0.03 0.00 39.48 2.90
2815 9270 5.060506 TCGCAAGTAAAGTTGGATTTCTGA 58.939 37.500 0.03 0.00 39.48 3.27
2816 9271 5.049405 ACTCGCAAGTAAAGTTGGATTTCTG 60.049 40.000 0.03 0.00 32.59 3.02
2818 9273 5.358298 ACTCGCAAGTAAAGTTGGATTTC 57.642 39.130 0.03 0.00 32.59 2.17
2819 9274 5.519722 CAACTCGCAAGTAAAGTTGGATTT 58.480 37.500 6.58 0.00 42.60 2.17
2820 9275 5.108385 CAACTCGCAAGTAAAGTTGGATT 57.892 39.130 6.58 0.00 42.60 3.01
2821 9276 4.749245 CAACTCGCAAGTAAAGTTGGAT 57.251 40.909 6.58 0.00 42.60 3.41
2826 9281 4.051922 CTCTCACAACTCGCAAGTAAAGT 58.948 43.478 0.00 0.00 33.48 2.66
2827 9282 4.299155 TCTCTCACAACTCGCAAGTAAAG 58.701 43.478 0.00 0.00 33.48 1.85
2829 9284 4.022329 TGATCTCTCACAACTCGCAAGTAA 60.022 41.667 0.00 0.00 33.48 2.24
2831 9286 2.297315 TGATCTCTCACAACTCGCAAGT 59.703 45.455 0.00 0.00 37.32 3.16
2832 9287 2.951726 TGATCTCTCACAACTCGCAAG 58.048 47.619 0.00 0.00 0.00 4.01
2833 9288 3.256558 CATGATCTCTCACAACTCGCAA 58.743 45.455 0.00 0.00 33.22 4.85
2834 9289 2.884827 CATGATCTCTCACAACTCGCA 58.115 47.619 0.00 0.00 33.22 5.10
2836 9291 2.159128 AGGCATGATCTCTCACAACTCG 60.159 50.000 0.00 0.00 33.22 4.18
2843 9304 3.957591 GAGCATAGGCATGATCTCTCA 57.042 47.619 0.67 0.00 42.97 3.27
2856 9317 9.023967 GGCATTAACATTTTACAAAGAGCATAG 57.976 33.333 0.00 0.00 0.00 2.23
2861 9322 9.921637 TTAAGGGCATTAACATTTTACAAAGAG 57.078 29.630 0.00 0.00 0.00 2.85
2873 9334 7.722285 AGAACTAAACACTTAAGGGCATTAACA 59.278 33.333 4.12 0.00 30.16 2.41
2874 9335 8.021396 CAGAACTAAACACTTAAGGGCATTAAC 58.979 37.037 4.12 0.83 30.16 2.01
2875 9336 7.940137 TCAGAACTAAACACTTAAGGGCATTAA 59.060 33.333 4.12 4.13 32.41 1.40
2877 9338 6.206829 GTCAGAACTAAACACTTAAGGGCATT 59.793 38.462 4.12 3.06 0.00 3.56
2880 9341 5.061179 TGTCAGAACTAAACACTTAAGGGC 58.939 41.667 4.12 0.00 0.00 5.19
2881 9342 6.710744 ACATGTCAGAACTAAACACTTAAGGG 59.289 38.462 2.27 2.27 0.00 3.95
2884 9345 8.332464 CGAAACATGTCAGAACTAAACACTTAA 58.668 33.333 0.00 0.00 0.00 1.85
2885 9346 7.493320 ACGAAACATGTCAGAACTAAACACTTA 59.507 33.333 0.00 0.00 0.00 2.24
2890 9353 7.513041 GCAAAACGAAACATGTCAGAACTAAAC 60.513 37.037 0.00 0.00 0.00 2.01
2894 9357 4.142491 TGCAAAACGAAACATGTCAGAACT 60.142 37.500 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.