AutoCloner

Multiple sequence alignment - TraesCS1D01G290800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G290800	chr1D	100.000	3933	0	0	1	3933	388989990	388993922	0.000000e+00	7263.0
1	TraesCS1D01G290800	chr1D	83.811	1606	172	43	1050	2627	389213018	389214563	0.000000e+00	1445.0
2	TraesCS1D01G290800	chr1D	81.611	1664	202	46	1466	3092	389555636	389554040	0.000000e+00	1282.0
3	TraesCS1D01G290800	chr1D	82.897	1491	174	45	1050	2515	389603094	389601660	0.000000e+00	1266.0
4	TraesCS1D01G290800	chr1D	85.027	561	39	15	3301	3821	389215713	389216268	2.690000e-146	529.0
5	TraesCS1D01G290800	chr1D	83.363	559	49	16	3301	3821	389599178	389598626	9.890000e-131	477.0
6	TraesCS1D01G290800	chr1D	85.814	430	38	13	3319	3730	389553728	389553304	6.040000e-118	435.0
7	TraesCS1D01G290800	chr1D	80.645	434	51	15	2501	2927	389600371	389599964	4.940000e-79	305.0
8	TraesCS1D01G290800	chr1D	75.938	453	65	19	2622	3071	389214641	389215052	4.010000e-45	193.0
9	TraesCS1D01G290800	chr1D	73.143	525	91	32	2608	3119	389494130	389493643	4.100000e-30	143.0
10	TraesCS1D01G290800	chr1D	88.496	113	10	3	3823	3933	389547048	389546937	2.470000e-27	134.0
11	TraesCS1D01G290800	chr1D	92.000	50	3	1	1033	1081	389556270	389556221	7.050000e-08	69.4
12	TraesCS1D01G290800	chr1D	94.737	38	2	0	992	1029	390727751	390727788	4.240000e-05	60.2
13	TraesCS1D01G290800	chr1A	91.374	2817	158	33	924	3708	488071329	488074092	0.000000e+00	3777.0
14	TraesCS1D01G290800	chr1A	83.171	1848	210	47	1104	2927	488111950	488110180	0.000000e+00	1596.0
15	TraesCS1D01G290800	chr1A	93.257	786	35	10	134	904	488070437	488071219	0.000000e+00	1142.0
16	TraesCS1D01G290800	chr1A	84.477	554	44	13	3301	3816	488109452	488108903	3.510000e-140	508.0
17	TraesCS1D01G290800	chr1A	95.477	199	7	2	3736	3933	488074091	488074288	2.280000e-82	316.0
18	TraesCS1D01G290800	chr1A	89.320	103	6	3	1	103	488070342	488070439	1.480000e-24	124.0
19	TraesCS1D01G290800	chr1B	91.943	2296	118	26	873	3128	522362595	522364863	0.000000e+00	3153.0
20	TraesCS1D01G290800	chr1B	84.009	1382	145	43	932	2298	522626326	522627646	0.000000e+00	1258.0
21	TraesCS1D01G290800	chr1B	91.440	771	38	16	107	861	522361719	522362477	0.000000e+00	1033.0
22	TraesCS1D01G290800	chr1B	91.535	508	22	10	3440	3933	522365400	522365900	0.000000e+00	680.0
23	TraesCS1D01G290800	chr1B	94.389	303	16	1	3114	3415	522364879	522365181	7.700000e-127	464.0
24	TraesCS1D01G290800	chr1B	85.714	434	38	13	3316	3730	522628866	522629294	1.680000e-118	436.0
25	TraesCS1D01G290800	chr1B	83.871	372	32	14	1	372	522361379	522361722	2.930000e-86	329.0
26	TraesCS1D01G290800	chr1B	73.802	939	152	58	998	1866	523338158	523339072	6.430000e-73	285.0
27	TraesCS1D01G290800	chr1B	88.144	194	19	4	2622	2814	522628090	522628280	1.100000e-55	228.0
28	TraesCS1D01G290800	chr1B	77.156	429	68	18	1468	1866	523208366	523208794	5.120000e-54	222.0
29	TraesCS1D01G290800	chr1B	72.486	527	94	32	2608	3119	522741100	522741590	5.340000e-24	122.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G290800	chr1D	388989990	388993922	3932	False	7263.000000	7263	100.000000	1	3933	1	chr1D.!!$F1	3932
1	TraesCS1D01G290800	chr1D	389213018	389216268	3250	False	722.333333	1445	81.592000	1050	3821	3	chr1D.!!$F3	2771
2	TraesCS1D01G290800	chr1D	389598626	389603094	4468	True	682.666667	1266	82.301667	1050	3821	3	chr1D.!!$R4	2771
3	TraesCS1D01G290800	chr1D	389553304	389556270	2966	True	595.466667	1282	86.475000	1033	3730	3	chr1D.!!$R3	2697
4	TraesCS1D01G290800	chr1A	488070342	488074288	3946	False	1339.750000	3777	92.357000	1	3933	4	chr1A.!!$F1	3932
5	TraesCS1D01G290800	chr1A	488108903	488111950	3047	True	1052.000000	1596	83.824000	1104	3816	2	chr1A.!!$R1	2712
6	TraesCS1D01G290800	chr1B	522361379	522365900	4521	False	1131.800000	3153	90.635600	1	3933	5	chr1B.!!$F4	3932
7	TraesCS1D01G290800	chr1B	522626326	522629294	2968	False	640.666667	1258	85.955667	932	3730	3	chr1B.!!$F5	2798
8	TraesCS1D01G290800	chr1B	523338158	523339072	914	False	285.000000	285	73.802000	998	1866	1	chr1B.!!$F3	868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
584	824	0.037326	CGAACTCCACAGCTTGCCTA	60.037	55.0	0.0	0.0	0.0	3.93	F
1890	2663	0.109597	CGCTGCCCAACTTTGACATC	60.110	55.0	0.0	0.0	0.0	3.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2139	2913	2.014128	AGTTCACAAACAAGGTCACCG	58.986	47.619	0.00	0.0	37.88	4.94	R
3714	6754	1.226773	GAATGCGCCAAGACCATGC	60.227	57.895	4.18	0.0	0.00	4.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
70	71	7.428020	TGCTTGCATCATTAATTAGGATTCAC	58.572	34.615	0.00	0.00	0.00	3.18
88	89	1.003759	CACGAGATTCTAGTACGCGCT	60.004	52.381	5.73	0.00	0.00	5.92
110	111	6.201044	CGCTCTTTCTCTTTCACTTCTGTTAA	59.799	38.462	0.00	0.00	0.00	2.01
128	129	8.810652	TCTGTTAACACATAAATTGCTTTTCC	57.189	30.769	3.59	0.00	30.39	3.13
315	549	4.514781	TGACTTGAGCAGTAATACACGT	57.485	40.909	0.00	0.00	35.01	4.49
320	554	6.197276	ACTTGAGCAGTAATACACGTATACG	58.803	40.000	23.24	23.24	38.70	3.06
343	578	5.053286	CGTTTCTTGTTTACTGAAACTTGCG	60.053	40.000	19.24	10.07	44.52	4.85
489	724	6.125327	TGTCTTAGTCGATGATCTCAGAAC	57.875	41.667	0.00	0.00	0.00	3.01
556	795	9.338622	GTATTTTATGGTTAGGTAGCTGATGTT	57.661	33.333	4.27	0.00	0.00	2.71
584	824	0.037326	CGAACTCCACAGCTTGCCTA	60.037	55.000	0.00	0.00	0.00	3.93
609	849	3.458189	ACACTAGCTTCCGAATATGTGC	58.542	45.455	0.00	0.00	0.00	4.57
666	907	1.066136	CAGTGACTGACAGTGCGATG	58.934	55.000	14.14	2.71	41.99	3.84
748	993	5.273170	CAAAAGTCTGAAAATCTTCGCACA	58.727	37.500	0.00	0.00	33.94	4.57
749	994	5.695851	AAAGTCTGAAAATCTTCGCACAT	57.304	34.783	0.00	0.00	33.94	3.21
766	1013	8.542497	TTCGCACATAAGTAAGTCTTGTTTAT	57.458	30.769	0.00	0.00	37.56	1.40
767	1014	8.542497	TCGCACATAAGTAAGTCTTGTTTATT	57.458	30.769	0.00	0.00	37.56	1.40
768	1015	8.995220	TCGCACATAAGTAAGTCTTGTTTATTT	58.005	29.630	0.00	0.00	37.56	1.40
807	1054	9.487790	AATTCTTCTTGTTTGAACTTGTTTTCA	57.512	25.926	0.00	0.00	33.55	2.69
808	1055	8.879342	TTCTTCTTGTTTGAACTTGTTTTCAA	57.121	26.923	0.00	0.00	42.47	2.69
878	1296	2.814336	ACTGGCGAAAGTCTGAAAATCC	59.186	45.455	0.00	0.00	38.11	3.01
882	1300	3.479949	GCGAAAGTCTGAAAATCCGAAC	58.520	45.455	0.00	0.00	0.00	3.95
907	1326	8.143835	ACAGGAGTTAATGAATTTTTGGACTTG	58.856	33.333	0.00	0.00	0.00	3.16
915	1334	6.790232	TGAATTTTTGGACTTGGAAGTTCT	57.210	33.333	2.25	0.00	39.88	3.01
916	1335	7.181569	TGAATTTTTGGACTTGGAAGTTCTT	57.818	32.000	2.25	0.00	39.88	2.52
921	1340	6.693315	TTTGGACTTGGAAGTTCTTACTTG	57.307	37.500	2.25	0.00	44.51	3.16
940	1385	4.452455	ACTTGCCTTATCTTTGTCGTCTTG	59.548	41.667	0.00	0.00	0.00	3.02
976	1423	1.202794	GCTAGAGCTAGACGGTACCCT	60.203	57.143	6.25	0.58	38.21	4.34
1100	1577	2.597217	CTGCGCAAAACCCTCCCA	60.597	61.111	13.05	0.00	0.00	4.37
1111	1600	3.077556	CCTCCCACCTCTCCACCG	61.078	72.222	0.00	0.00	0.00	4.94
1138	1627	2.055042	AAGATGCTCCGACGCCTCT	61.055	57.895	0.00	0.00	36.62	3.69
1450	2178	3.740128	ATCACAGCGATGCCCGGAC	62.740	63.158	0.73	0.00	39.04	4.79
1509	2237	0.603975	GCTTCGTCTGCAACCCTCTT	60.604	55.000	0.00	0.00	0.00	2.85
1600	2358	4.891727	CCCAATCCGACGGCTCCG	62.892	72.222	9.66	6.79	46.03	4.63
1620	2378	3.712907	GGCCCGCCTGACAGGTTA	61.713	66.667	22.58	0.00	37.80	2.85
1824	2597	1.254026	TTGGTGTCTTCTCCGTCGAT	58.746	50.000	0.00	0.00	0.00	3.59
1890	2663	0.109597	CGCTGCCCAACTTTGACATC	60.110	55.000	0.00	0.00	0.00	3.06
2038	2811	5.470098	TGGAAGCTAACACATGAGAAAAGAC	59.530	40.000	0.00	0.00	0.00	3.01
2139	2913	4.622740	GCCAGCATTTTCTATTTCACACAC	59.377	41.667	0.00	0.00	0.00	3.82
2187	2964	0.400670	ATAAGGGGGAGACTGGGAGC	60.401	60.000	0.00	0.00	0.00	4.70
2213	2990	4.401022	TCTTTTCCAGACAGCATCACATT	58.599	39.130	0.00	0.00	0.00	2.71
2214	2991	4.456911	TCTTTTCCAGACAGCATCACATTC	59.543	41.667	0.00	0.00	0.00	2.67
2396	3179	6.419710	GGGTGCACAAGTTTTAGTTTAACATC	59.580	38.462	20.43	0.00	0.00	3.06
2453	3254	9.363763	CACAGCATGGATATACTCTATTTGTAG	57.636	37.037	0.00	0.00	43.62	2.74
2739	5018	8.706936	CAACATATATCTCTATGCAACTGTCAC	58.293	37.037	0.00	0.00	33.26	3.67
2747	5026	7.317390	TCTCTATGCAACTGTCACGTTAAATA	58.683	34.615	0.00	0.00	0.00	1.40
2754	5033	6.146673	GCAACTGTCACGTTAAATACCTAAGT	59.853	38.462	0.00	0.00	0.00	2.24
2838	5119	8.647226	GTGTATCATTTGTGTTTAATTTCCTGC	58.353	33.333	0.00	0.00	0.00	4.85
2890	5221	0.168128	GAAAGGCGACCAATGGAACG	59.832	55.000	6.16	12.51	0.00	3.95
2962	5296	0.240945	AAAAATCGAAGCACGCCAGG	59.759	50.000	0.00	0.00	42.26	4.45
2963	5297	0.889186	AAAATCGAAGCACGCCAGGT	60.889	50.000	0.00	0.00	42.26	4.00
2964	5298	1.298859	AAATCGAAGCACGCCAGGTC	61.299	55.000	0.00	0.00	42.26	3.85
2982	5317	3.124560	GGTCGCCAGCTAACTTATCTTC	58.875	50.000	0.00	0.00	0.00	2.87
2995	5330	8.619546	GCTAACTTATCTTCGGTACTTTCTCTA	58.380	37.037	0.00	0.00	0.00	2.43
3002	5337	4.698583	TCGGTACTTTCTCTAGAACAGC	57.301	45.455	0.00	0.00	33.13	4.40
3018	5354	1.683385	ACAGCTCTTTCTTGTTTGGGC	59.317	47.619	0.00	0.00	0.00	5.36
3020	5356	2.101249	CAGCTCTTTCTTGTTTGGGCAA	59.899	45.455	0.00	0.00	0.00	4.52
3041	5377	6.197842	GGCAATCTTCTTATTTTCGCTTGATG	59.802	38.462	0.00	0.00	0.00	3.07
3136	5503	5.527582	ACTTGCAAGAGTAAGTAGTTTGGTG	59.472	40.000	32.50	0.60	46.79	4.17
3139	5506	5.526111	TGCAAGAGTAAGTAGTTTGGTGAAC	59.474	40.000	0.00	0.00	38.58	3.18
3169	5777	4.222145	TGACGAACTGCTACCCTAATTTCT	59.778	41.667	0.00	0.00	0.00	2.52
3234	5992	6.039047	ACTCCTATGCTGCATCAATAGTTTTG	59.961	38.462	19.90	3.57	0.00	2.44
3267	6030	2.808543	GTCTTCAGTGCTTTGTACAGGG	59.191	50.000	0.00	0.00	0.00	4.45
3287	6054	4.712337	AGGGGTATTGTCTGAACTACTCTG	59.288	45.833	0.00	0.00	0.00	3.35
3493	6506	6.770785	AGTAACCTTGCTGTGTTTGAGATTTA	59.229	34.615	0.00	0.00	0.00	1.40
3494	6507	5.695851	ACCTTGCTGTGTTTGAGATTTAG	57.304	39.130	0.00	0.00	0.00	1.85
3495	6508	5.133221	ACCTTGCTGTGTTTGAGATTTAGT	58.867	37.500	0.00	0.00	0.00	2.24
3643	6683	1.303561	TGATGGTGGCACTGGAAGC	60.304	57.895	18.45	4.66	37.60	3.86
3714	6754	2.178890	GCTGATGCGCTCCCTGAAG	61.179	63.158	9.73	0.00	0.00	3.02
3804	6868	2.427453	ACACGATGCTTATCTTCTCCGT	59.573	45.455	0.00	0.00	0.00	4.69
3809	6873	4.912766	CGATGCTTATCTTCTCCGTAGAAC	59.087	45.833	0.00	0.00	36.80	3.01
3877	6941	5.006358	GTGCAATAGGTCATTTACGTGGTAG	59.994	44.000	0.00	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	6.017109	TGTGTTAAGAAGTGAAAGAGAATGGC	60.017	38.462	0.00	0.00	0.00	4.40
70	71	1.527736	AGAGCGCGTACTAGAATCTCG	59.472	52.381	8.43	0.00	0.00	4.04
82	83	1.140816	GTGAAAGAGAAAGAGCGCGT	58.859	50.000	8.43	0.00	0.00	6.01
88	89	7.822334	TGTGTTAACAGAAGTGAAAGAGAAAGA	59.178	33.333	8.98	0.00	0.00	2.52
110	111	4.346418	TGGGTGGAAAAGCAATTTATGTGT	59.654	37.500	0.00	0.00	0.00	3.72
128	129	2.023673	TGCAGTCAAAAGAAGTGGGTG	58.976	47.619	0.00	0.00	0.00	4.61
171	172	7.797121	AAGGGTGATATTTTGTTTCTGGAAT	57.203	32.000	0.00	0.00	0.00	3.01
177	178	6.230472	AGGCAAAAGGGTGATATTTTGTTTC	58.770	36.000	10.91	3.64	44.48	2.78
320	554	6.243105	CGCAAGTTTCAGTAAACAAGAAAC	57.757	37.500	16.77	16.77	46.18	2.78
343	578	2.885266	GAGAAAACCTGGAAAGGTGGAC	59.115	50.000	0.00	0.00	42.20	4.02
494	733	2.649257	GATACATCGGCGCTGCGTC	61.649	63.158	24.04	21.13	0.00	5.19
545	784	5.378292	TCGATAGGATCAACATCAGCTAC	57.622	43.478	0.00	0.00	0.00	3.58
556	795	2.362397	GCTGTGGAGTTCGATAGGATCA	59.638	50.000	0.00	0.00	0.00	2.92
584	824	6.202954	GCACATATTCGGAAGCTAGTGTTTAT	59.797	38.462	13.26	0.00	0.00	1.40
609	849	4.506886	TTTAGGGCATTTACAAACCACG	57.493	40.909	0.00	0.00	0.00	4.94
797	1044	4.466015	ACATGACCCACTTTGAAAACAAGT	59.534	37.500	0.00	0.00	34.67	3.16
806	1053	5.902613	ATCAACATACATGACCCACTTTG	57.097	39.130	0.00	0.00	0.00	2.77
807	1054	6.248433	AGAATCAACATACATGACCCACTTT	58.752	36.000	0.00	0.00	0.00	2.66
808	1055	5.819991	AGAATCAACATACATGACCCACTT	58.180	37.500	0.00	0.00	0.00	3.16
809	1056	5.441718	AGAATCAACATACATGACCCACT	57.558	39.130	0.00	0.00	0.00	4.00
810	1057	6.324819	CAAAGAATCAACATACATGACCCAC	58.675	40.000	0.00	0.00	0.00	4.61
863	1175	4.755123	TCCTGTTCGGATTTTCAGACTTTC	59.245	41.667	0.00	0.00	36.69	2.62
878	1296	7.326063	GTCCAAAAATTCATTAACTCCTGTTCG	59.674	37.037	0.00	0.00	37.59	3.95
882	1300	7.599998	CCAAGTCCAAAAATTCATTAACTCCTG	59.400	37.037	0.00	0.00	0.00	3.86
907	1326	7.175119	ACAAAGATAAGGCAAGTAAGAACTTCC	59.825	37.037	0.00	0.00	44.28	3.46
915	1334	5.790593	AGACGACAAAGATAAGGCAAGTAA	58.209	37.500	0.00	0.00	0.00	2.24
916	1335	5.401531	AGACGACAAAGATAAGGCAAGTA	57.598	39.130	0.00	0.00	0.00	2.24
920	1339	3.994392	GACAAGACGACAAAGATAAGGCA	59.006	43.478	0.00	0.00	0.00	4.75
921	1340	4.092091	CAGACAAGACGACAAAGATAAGGC	59.908	45.833	0.00	0.00	0.00	4.35
940	1385	1.676678	TAGCCCATGGTCTCGCAGAC	61.677	60.000	11.73	7.52	44.32	3.51
976	1423	1.834856	CTCTGGCTGGCACAAGGAGA	61.835	60.000	11.28	1.21	38.70	3.71
1100	1577	2.203788	TTCTGGCGGTGGAGAGGT	60.204	61.111	0.00	0.00	0.00	3.85
1433	2161	4.451150	GTCCGGGCATCGCTGTGA	62.451	66.667	0.00	0.00	37.59	3.58
1486	2214	4.430423	GTTGCAGACGAAGCGCCG	62.430	66.667	2.29	3.59	33.85	6.46
1646	2404	2.124570	CCATCTGGCCGTCCCTTG	60.125	66.667	0.00	0.00	0.00	3.61
1824	2597	4.467084	GGCCGGTCGCTGAATGGA	62.467	66.667	1.90	0.00	37.74	3.41
2038	2811	2.103094	TGTCAGACAAGACCAGGTTCAG	59.897	50.000	0.00	0.00	37.73	3.02
2120	2894	4.794169	ACCGTGTGTGAAATAGAAAATGC	58.206	39.130	0.00	0.00	0.00	3.56
2139	2913	2.014128	AGTTCACAAACAAGGTCACCG	58.986	47.619	0.00	0.00	37.88	4.94
2187	2964	3.817084	TGATGCTGTCTGGAAAAGAACTG	59.183	43.478	0.00	0.00	36.40	3.16
2396	3179	6.018832	GGTTCCACACACATGATTTGAAAAAG	60.019	38.462	0.00	0.00	0.00	2.27
2453	3254	8.083462	TCAGTACAGATACAATTTGTGTCAAC	57.917	34.615	23.02	17.79	40.39	3.18
2636	4913	6.646240	GTCCATTGCAATCAACAAAATACACT	59.354	34.615	9.53	0.00	34.60	3.55
2695	4972	8.894768	ATATGTTGACATTAAGTAGAGAAGCC	57.105	34.615	1.46	0.00	37.76	4.35
2812	5091	8.647226	GCAGGAAATTAAACACAAATGATACAC	58.353	33.333	0.00	0.00	0.00	2.90
2838	5119	9.429359	GTGTTCCTTCAGTTATATCCATAGATG	57.571	37.037	0.00	0.00	33.67	2.90
2890	5221	2.550830	TGTCTGCCAAAGTCTTCCTC	57.449	50.000	0.00	0.00	0.00	3.71
2962	5296	2.789893	CGAAGATAAGTTAGCTGGCGAC	59.210	50.000	14.80	0.00	0.00	5.19
2963	5297	2.223735	CCGAAGATAAGTTAGCTGGCGA	60.224	50.000	19.22	0.00	0.00	5.54
2964	5298	2.128035	CCGAAGATAAGTTAGCTGGCG	58.872	52.381	13.59	13.59	0.00	5.69
2982	5317	4.396790	AGAGCTGTTCTAGAGAAAGTACCG	59.603	45.833	0.00	0.00	35.58	4.02
2995	5330	3.633986	CCCAAACAAGAAAGAGCTGTTCT	59.366	43.478	0.00	0.00	36.90	3.01
3002	5337	4.861102	AGATTGCCCAAACAAGAAAGAG	57.139	40.909	0.00	0.00	31.96	2.85
3018	5354	8.679288	AACATCAAGCGAAAATAAGAAGATTG	57.321	30.769	0.00	0.00	0.00	2.67
3058	5395	4.002982	CAGAATCATGAACACGGGAAAGA	58.997	43.478	0.00	0.00	0.00	2.52
3136	5503	1.461127	GCAGTTCGTCATGGTGAGTTC	59.539	52.381	0.00	0.00	0.00	3.01
3139	5506	2.263077	GTAGCAGTTCGTCATGGTGAG	58.737	52.381	0.00	0.00	0.00	3.51
3148	5519	4.222145	TCAGAAATTAGGGTAGCAGTTCGT	59.778	41.667	0.00	0.00	0.00	3.85
3189	5797	6.660949	AGGAGTTGGAATTAAGGATGACAAAG	59.339	38.462	0.00	0.00	0.00	2.77
3190	5798	6.552008	AGGAGTTGGAATTAAGGATGACAAA	58.448	36.000	0.00	0.00	0.00	2.83
3267	6030	5.105752	CAGCAGAGTAGTTCAGACAATACC	58.894	45.833	0.00	0.00	0.00	2.73
3520	6551	6.583806	GGATGCTTTTCTACAAAGAACATGTG	59.416	38.462	0.00	0.00	41.48	3.21
3643	6683	3.700538	TCCCCAAAATGAGAGTTCATGG	58.299	45.455	0.00	0.00	43.20	3.66
3714	6754	1.226773	GAATGCGCCAAGACCATGC	60.227	57.895	4.18	0.00	0.00	4.06
3804	6868	6.537301	CCTTTGATAGGTGCAATAACGTTCTA	59.463	38.462	2.82	0.00	39.39	2.10
3809	6873	7.173218	ACATATCCTTTGATAGGTGCAATAACG	59.827	37.037	0.00	0.00	44.43	3.18
3842	6906	4.165779	GACCTATTGCACCAAAACAATCG	58.834	43.478	0.00	0.00	37.63	3.34
3877	6941	3.667261	GCGCATGCATTTCTTATCATCAC	59.333	43.478	19.57	0.00	42.15	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.