Multiple sequence alignment - TraesCS1D01G290200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G290200 chr1D 100.000 2312 0 0 1 2312 388602638 388604949 0.000000e+00 4270
1 TraesCS1D01G290200 chr1D 85.512 849 77 30 720 1538 445367090 445366258 0.000000e+00 845
2 TraesCS1D01G290200 chr1D 82.465 941 113 37 720 1634 63682356 63681442 0.000000e+00 776
3 TraesCS1D01G290200 chr1D 81.545 233 28 9 1335 1566 394490842 394490624 6.560000e-41 178
4 TraesCS1D01G290200 chr1B 90.282 1101 61 20 561 1634 521860558 521861639 0.000000e+00 1399
5 TraesCS1D01G290200 chr1B 94.622 595 30 2 1720 2312 521862046 521862640 0.000000e+00 920
6 TraesCS1D01G290200 chr1B 87.374 792 78 17 726 1510 608335898 608335122 0.000000e+00 889
7 TraesCS1D01G290200 chr1B 86.534 802 74 19 726 1503 608043027 608042236 0.000000e+00 852
8 TraesCS1D01G290200 chr1B 85.766 836 80 25 726 1538 610892995 610893814 0.000000e+00 848
9 TraesCS1D01G290200 chr1B 95.604 91 4 0 1636 1726 521861686 521861776 1.850000e-31 147
10 TraesCS1D01G290200 chr1A 89.662 1064 74 12 561 1605 487604112 487605158 0.000000e+00 1323
11 TraesCS1D01G290200 chr1A 86.862 784 72 20 722 1492 541461057 541460292 0.000000e+00 848
12 TraesCS1D01G290200 chr1A 87.067 750 62 24 720 1445 541343548 541344286 0.000000e+00 815
13 TraesCS1D01G290200 chr1A 85.634 710 70 25 789 1488 62794694 62794007 0.000000e+00 717
14 TraesCS1D01G290200 chr1A 89.412 340 20 4 1717 2055 487606364 487606688 4.600000e-112 414
15 TraesCS1D01G290200 chr1A 96.279 215 6 2 2099 2312 487606690 487606903 3.650000e-93 351
16 TraesCS1D01G290200 chr6B 86.968 752 71 23 752 1488 679983666 679982927 0.000000e+00 821


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G290200 chr1D 388602638 388604949 2311 False 4270 4270 100.000000 1 2312 1 chr1D.!!$F1 2311
1 TraesCS1D01G290200 chr1D 445366258 445367090 832 True 845 845 85.512000 720 1538 1 chr1D.!!$R3 818
2 TraesCS1D01G290200 chr1D 63681442 63682356 914 True 776 776 82.465000 720 1634 1 chr1D.!!$R1 914
3 TraesCS1D01G290200 chr1B 608335122 608335898 776 True 889 889 87.374000 726 1510 1 chr1B.!!$R2 784
4 TraesCS1D01G290200 chr1B 608042236 608043027 791 True 852 852 86.534000 726 1503 1 chr1B.!!$R1 777
5 TraesCS1D01G290200 chr1B 610892995 610893814 819 False 848 848 85.766000 726 1538 1 chr1B.!!$F1 812
6 TraesCS1D01G290200 chr1B 521860558 521862640 2082 False 822 1399 93.502667 561 2312 3 chr1B.!!$F2 1751
7 TraesCS1D01G290200 chr1A 541460292 541461057 765 True 848 848 86.862000 722 1492 1 chr1A.!!$R2 770
8 TraesCS1D01G290200 chr1A 541343548 541344286 738 False 815 815 87.067000 720 1445 1 chr1A.!!$F1 725
9 TraesCS1D01G290200 chr1A 62794007 62794694 687 True 717 717 85.634000 789 1488 1 chr1A.!!$R1 699
10 TraesCS1D01G290200 chr1A 487604112 487606903 2791 False 696 1323 91.784333 561 2312 3 chr1A.!!$F2 1751
11 TraesCS1D01G290200 chr6B 679982927 679983666 739 True 821 821 86.968000 752 1488 1 chr6B.!!$R1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.033504 TGTGAGCTCGGTTGAACCTC 59.966 55.0 13.18 3.59 35.66 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2064 3428 1.171308 CTGGCCTTGAACACATCAGG 58.829 55.0 3.32 0.0 39.77 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.103208 AGCTTGGCCGATAAGAGTCG 59.897 55.000 5.51 0.00 41.13 4.18
27 28 2.476873 CGATAAGAGTCGGTCCACTG 57.523 55.000 0.00 0.00 37.94 3.66
28 29 1.065701 CGATAAGAGTCGGTCCACTGG 59.934 57.143 0.00 0.00 37.94 4.00
29 30 2.376109 GATAAGAGTCGGTCCACTGGA 58.624 52.381 0.00 0.00 0.00 3.86
30 31 1.835494 TAAGAGTCGGTCCACTGGAG 58.165 55.000 0.00 0.00 29.39 3.86
31 32 1.536943 AAGAGTCGGTCCACTGGAGC 61.537 60.000 16.20 16.20 45.64 4.70
32 33 2.997897 AGTCGGTCCACTGGAGCC 60.998 66.667 19.53 12.58 46.28 4.70
33 34 3.311110 GTCGGTCCACTGGAGCCA 61.311 66.667 19.53 6.10 46.28 4.75
34 35 2.525629 TCGGTCCACTGGAGCCAA 60.526 61.111 19.53 7.21 46.28 4.52
35 36 2.144078 TCGGTCCACTGGAGCCAAA 61.144 57.895 19.53 4.91 46.28 3.28
36 37 1.672356 CGGTCCACTGGAGCCAAAG 60.672 63.158 19.53 3.94 46.28 2.77
37 38 1.973812 GGTCCACTGGAGCCAAAGC 60.974 63.158 15.42 0.00 43.62 3.51
38 39 1.973812 GTCCACTGGAGCCAAAGCC 60.974 63.158 0.00 0.00 41.25 4.35
39 40 3.058160 CCACTGGAGCCAAAGCCG 61.058 66.667 0.00 0.00 41.25 5.52
40 41 3.058160 CACTGGAGCCAAAGCCGG 61.058 66.667 0.00 0.00 41.25 6.13
47 48 4.959596 GCCAAAGCCGGCGCAAAA 62.960 61.111 23.20 0.00 43.52 2.44
48 49 2.048316 CCAAAGCCGGCGCAAAAT 60.048 55.556 23.20 0.00 37.52 1.82
49 50 2.381967 CCAAAGCCGGCGCAAAATG 61.382 57.895 23.20 14.20 37.52 2.32
50 51 1.664333 CAAAGCCGGCGCAAAATGT 60.664 52.632 23.20 0.00 37.52 2.71
51 52 1.664333 AAAGCCGGCGCAAAATGTG 60.664 52.632 23.20 0.00 37.52 3.21
52 53 2.081425 AAAGCCGGCGCAAAATGTGA 62.081 50.000 23.20 0.00 37.52 3.58
53 54 2.476534 AAGCCGGCGCAAAATGTGAG 62.477 55.000 23.20 0.00 37.52 3.51
58 59 4.751539 CGCAAAATGTGAGCTCGG 57.248 55.556 9.64 0.00 0.00 4.63
59 60 1.868997 CGCAAAATGTGAGCTCGGT 59.131 52.632 9.64 0.00 0.00 4.69
60 61 0.238289 CGCAAAATGTGAGCTCGGTT 59.762 50.000 9.64 0.55 0.00 4.44
61 62 1.689959 GCAAAATGTGAGCTCGGTTG 58.310 50.000 9.64 9.34 0.00 3.77
62 63 1.266718 GCAAAATGTGAGCTCGGTTGA 59.733 47.619 9.64 0.00 0.00 3.18
63 64 2.287547 GCAAAATGTGAGCTCGGTTGAA 60.288 45.455 9.64 0.00 0.00 2.69
64 65 3.300009 CAAAATGTGAGCTCGGTTGAAC 58.700 45.455 9.64 0.60 0.00 3.18
65 66 1.523758 AATGTGAGCTCGGTTGAACC 58.476 50.000 9.64 3.76 34.05 3.62
66 67 0.687354 ATGTGAGCTCGGTTGAACCT 59.313 50.000 13.18 0.00 35.66 3.50
67 68 0.033504 TGTGAGCTCGGTTGAACCTC 59.966 55.000 13.18 3.59 35.66 3.85
68 69 0.318762 GTGAGCTCGGTTGAACCTCT 59.681 55.000 13.18 6.58 35.66 3.69
69 70 0.603569 TGAGCTCGGTTGAACCTCTC 59.396 55.000 13.18 15.01 35.66 3.20
70 71 0.603569 GAGCTCGGTTGAACCTCTCA 59.396 55.000 13.18 0.00 35.66 3.27
71 72 1.000955 GAGCTCGGTTGAACCTCTCAA 59.999 52.381 13.18 0.00 41.93 3.02
72 73 1.001406 AGCTCGGTTGAACCTCTCAAG 59.999 52.381 13.18 3.42 44.83 3.02
73 74 1.000955 GCTCGGTTGAACCTCTCAAGA 59.999 52.381 13.18 0.00 44.83 3.02
74 75 2.354203 GCTCGGTTGAACCTCTCAAGAT 60.354 50.000 13.18 0.00 44.83 2.40
75 76 3.516615 CTCGGTTGAACCTCTCAAGATC 58.483 50.000 13.18 0.00 44.83 2.75
76 77 2.233922 TCGGTTGAACCTCTCAAGATCC 59.766 50.000 13.18 0.00 44.83 3.36
77 78 2.028112 CGGTTGAACCTCTCAAGATCCA 60.028 50.000 13.18 0.00 44.83 3.41
78 79 3.369892 CGGTTGAACCTCTCAAGATCCAT 60.370 47.826 13.18 0.00 44.83 3.41
79 80 3.944015 GGTTGAACCTCTCAAGATCCATG 59.056 47.826 7.20 0.00 44.83 3.66
80 81 4.323792 GGTTGAACCTCTCAAGATCCATGA 60.324 45.833 7.20 0.00 44.83 3.07
81 82 4.478206 TGAACCTCTCAAGATCCATGAC 57.522 45.455 0.00 0.00 0.00 3.06
82 83 3.198635 TGAACCTCTCAAGATCCATGACC 59.801 47.826 0.00 0.00 0.00 4.02
83 84 2.122768 ACCTCTCAAGATCCATGACCC 58.877 52.381 0.00 0.00 0.00 4.46
84 85 1.419387 CCTCTCAAGATCCATGACCCC 59.581 57.143 0.00 0.00 0.00 4.95
85 86 2.121948 CTCTCAAGATCCATGACCCCA 58.878 52.381 0.00 0.00 0.00 4.96
86 87 2.507058 CTCTCAAGATCCATGACCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
87 88 2.918934 TCTCAAGATCCATGACCCCAAA 59.081 45.455 0.00 0.00 0.00 3.28
88 89 3.019564 CTCAAGATCCATGACCCCAAAC 58.980 50.000 0.00 0.00 0.00 2.93
89 90 2.102578 CAAGATCCATGACCCCAAACC 58.897 52.381 0.00 0.00 0.00 3.27
90 91 0.631212 AGATCCATGACCCCAAACCC 59.369 55.000 0.00 0.00 0.00 4.11
91 92 0.397114 GATCCATGACCCCAAACCCC 60.397 60.000 0.00 0.00 0.00 4.95
92 93 1.885593 ATCCATGACCCCAAACCCCC 61.886 60.000 0.00 0.00 0.00 5.40
114 115 2.515757 GCCTTAGGCCAGCAGAGC 60.516 66.667 13.12 0.00 44.06 4.09
115 116 2.202987 CCTTAGGCCAGCAGAGCG 60.203 66.667 5.01 0.00 0.00 5.03
116 117 2.725312 CCTTAGGCCAGCAGAGCGA 61.725 63.158 5.01 0.00 0.00 4.93
117 118 1.520342 CTTAGGCCAGCAGAGCGAC 60.520 63.158 5.01 0.00 0.00 5.19
118 119 2.914777 CTTAGGCCAGCAGAGCGACC 62.915 65.000 5.01 0.00 0.00 4.79
130 131 2.260434 GCGACCGCTAGTTGACCA 59.740 61.111 7.19 0.00 38.26 4.02
131 132 1.805945 GCGACCGCTAGTTGACCAG 60.806 63.158 7.19 0.00 38.26 4.00
132 133 1.880894 CGACCGCTAGTTGACCAGA 59.119 57.895 0.00 0.00 30.42 3.86
133 134 0.179161 CGACCGCTAGTTGACCAGAG 60.179 60.000 0.00 0.00 30.42 3.35
134 135 1.174783 GACCGCTAGTTGACCAGAGA 58.825 55.000 0.00 0.00 0.00 3.10
135 136 1.133407 GACCGCTAGTTGACCAGAGAG 59.867 57.143 0.00 0.00 0.00 3.20
136 137 1.178276 CCGCTAGTTGACCAGAGAGT 58.822 55.000 0.00 0.00 0.00 3.24
137 138 1.135257 CCGCTAGTTGACCAGAGAGTG 60.135 57.143 0.00 0.00 0.00 3.51
145 146 2.667418 CCAGAGAGTGGCCACTGG 59.333 66.667 42.40 31.80 42.66 4.00
146 147 3.797331 CAGAGAGTGGCCACTGGA 58.203 61.111 42.40 0.00 42.66 3.86
147 148 2.294890 CAGAGAGTGGCCACTGGAT 58.705 57.895 42.40 26.79 42.66 3.41
148 149 0.107800 CAGAGAGTGGCCACTGGATG 60.108 60.000 42.40 29.58 42.66 3.51
149 150 1.451028 GAGAGTGGCCACTGGATGC 60.451 63.158 42.40 26.51 42.66 3.91
150 151 2.189191 GAGAGTGGCCACTGGATGCA 62.189 60.000 42.40 0.00 42.66 3.96
151 152 1.077212 GAGTGGCCACTGGATGCAT 60.077 57.895 42.40 17.04 42.66 3.96
152 153 1.077212 AGTGGCCACTGGATGCATC 60.077 57.895 37.39 18.81 40.75 3.91
162 163 2.127839 GGATGCATCCTCGGAGTCA 58.872 57.895 34.20 0.00 43.73 3.41
163 164 0.683973 GGATGCATCCTCGGAGTCAT 59.316 55.000 34.20 0.00 43.73 3.06
164 165 1.337635 GGATGCATCCTCGGAGTCATC 60.338 57.143 34.20 15.92 43.73 2.92
165 166 0.316522 ATGCATCCTCGGAGTCATCG 59.683 55.000 4.02 0.00 0.00 3.84
166 167 1.663074 GCATCCTCGGAGTCATCGC 60.663 63.158 4.02 0.00 0.00 4.58
167 168 1.006805 CATCCTCGGAGTCATCGCC 60.007 63.158 4.02 0.00 0.00 5.54
168 169 1.455773 ATCCTCGGAGTCATCGCCA 60.456 57.895 4.02 0.00 33.04 5.69
169 170 1.739338 ATCCTCGGAGTCATCGCCAC 61.739 60.000 4.02 0.00 33.04 5.01
170 171 2.710902 CCTCGGAGTCATCGCCACA 61.711 63.158 4.02 0.00 33.04 4.17
171 172 1.517257 CTCGGAGTCATCGCCACAC 60.517 63.158 0.00 0.00 33.04 3.82
172 173 2.509336 CGGAGTCATCGCCACACC 60.509 66.667 0.00 0.00 33.04 4.16
173 174 2.662596 GGAGTCATCGCCACACCA 59.337 61.111 0.00 0.00 33.68 4.17
174 175 1.448540 GGAGTCATCGCCACACCAG 60.449 63.158 0.00 0.00 33.68 4.00
175 176 1.591703 GAGTCATCGCCACACCAGA 59.408 57.895 0.00 0.00 0.00 3.86
176 177 0.176680 GAGTCATCGCCACACCAGAT 59.823 55.000 0.00 0.00 0.00 2.90
177 178 0.107993 AGTCATCGCCACACCAGATG 60.108 55.000 0.00 0.00 42.11 2.90
178 179 0.108186 GTCATCGCCACACCAGATGA 60.108 55.000 3.56 3.56 45.69 2.92
179 180 0.612744 TCATCGCCACACCAGATGAA 59.387 50.000 5.06 0.00 45.14 2.57
180 181 1.012086 CATCGCCACACCAGATGAAG 58.988 55.000 0.00 0.00 43.06 3.02
181 182 0.615331 ATCGCCACACCAGATGAAGT 59.385 50.000 0.00 0.00 0.00 3.01
182 183 0.396435 TCGCCACACCAGATGAAGTT 59.604 50.000 0.00 0.00 0.00 2.66
183 184 0.518636 CGCCACACCAGATGAAGTTG 59.481 55.000 0.00 0.00 0.00 3.16
184 185 0.242017 GCCACACCAGATGAAGTTGC 59.758 55.000 0.00 0.00 0.00 4.17
185 186 0.518636 CCACACCAGATGAAGTTGCG 59.481 55.000 0.00 0.00 0.00 4.85
186 187 1.511850 CACACCAGATGAAGTTGCGA 58.488 50.000 0.00 0.00 0.00 5.10
187 188 1.462283 CACACCAGATGAAGTTGCGAG 59.538 52.381 0.00 0.00 0.00 5.03
188 189 0.445436 CACCAGATGAAGTTGCGAGC 59.555 55.000 0.00 0.00 0.00 5.03
189 190 0.322975 ACCAGATGAAGTTGCGAGCT 59.677 50.000 0.00 0.00 0.00 4.09
190 191 1.271054 ACCAGATGAAGTTGCGAGCTT 60.271 47.619 0.00 0.00 0.00 3.74
191 192 1.129998 CCAGATGAAGTTGCGAGCTTG 59.870 52.381 0.00 0.00 0.00 4.01
192 193 1.802960 CAGATGAAGTTGCGAGCTTGT 59.197 47.619 2.14 0.00 0.00 3.16
193 194 1.802960 AGATGAAGTTGCGAGCTTGTG 59.197 47.619 2.14 0.00 0.00 3.33
194 195 1.800586 GATGAAGTTGCGAGCTTGTGA 59.199 47.619 2.14 0.00 0.00 3.58
195 196 1.882912 TGAAGTTGCGAGCTTGTGAT 58.117 45.000 2.14 0.00 0.00 3.06
196 197 2.221169 TGAAGTTGCGAGCTTGTGATT 58.779 42.857 2.14 0.00 0.00 2.57
197 198 2.618241 TGAAGTTGCGAGCTTGTGATTT 59.382 40.909 2.14 0.00 0.00 2.17
198 199 3.066621 TGAAGTTGCGAGCTTGTGATTTT 59.933 39.130 2.14 0.00 0.00 1.82
199 200 3.273919 AGTTGCGAGCTTGTGATTTTC 57.726 42.857 2.14 0.00 0.00 2.29
200 201 2.030805 AGTTGCGAGCTTGTGATTTTCC 60.031 45.455 2.14 0.00 0.00 3.13
201 202 0.881118 TGCGAGCTTGTGATTTTCCC 59.119 50.000 2.14 0.00 0.00 3.97
202 203 0.881118 GCGAGCTTGTGATTTTCCCA 59.119 50.000 2.14 0.00 0.00 4.37
203 204 1.135575 GCGAGCTTGTGATTTTCCCAG 60.136 52.381 2.14 0.00 0.00 4.45
204 205 1.470098 CGAGCTTGTGATTTTCCCAGG 59.530 52.381 0.00 0.00 0.00 4.45
205 206 2.519013 GAGCTTGTGATTTTCCCAGGT 58.481 47.619 0.00 0.00 0.00 4.00
206 207 3.686016 GAGCTTGTGATTTTCCCAGGTA 58.314 45.455 0.00 0.00 0.00 3.08
207 208 4.079253 GAGCTTGTGATTTTCCCAGGTAA 58.921 43.478 0.00 0.00 0.00 2.85
208 209 4.082125 AGCTTGTGATTTTCCCAGGTAAG 58.918 43.478 0.00 0.00 0.00 2.34
209 210 3.367395 GCTTGTGATTTTCCCAGGTAAGC 60.367 47.826 0.00 0.00 0.00 3.09
210 211 3.517296 TGTGATTTTCCCAGGTAAGCA 57.483 42.857 0.00 0.00 0.00 3.91
211 212 3.420893 TGTGATTTTCCCAGGTAAGCAG 58.579 45.455 0.00 0.00 0.00 4.24
212 213 3.181434 TGTGATTTTCCCAGGTAAGCAGT 60.181 43.478 0.00 0.00 0.00 4.40
213 214 3.191371 GTGATTTTCCCAGGTAAGCAGTG 59.809 47.826 0.00 0.00 0.00 3.66
214 215 2.286365 TTTTCCCAGGTAAGCAGTGG 57.714 50.000 0.00 0.00 0.00 4.00
218 219 1.078143 CCAGGTAAGCAGTGGGAGC 60.078 63.158 0.00 0.00 0.00 4.70
219 220 1.448540 CAGGTAAGCAGTGGGAGCG 60.449 63.158 0.00 0.00 37.01 5.03
220 221 2.820037 GGTAAGCAGTGGGAGCGC 60.820 66.667 0.00 0.00 37.01 5.92
221 222 2.820037 GTAAGCAGTGGGAGCGCC 60.820 66.667 2.29 0.00 37.01 6.53
222 223 4.451150 TAAGCAGTGGGAGCGCCG 62.451 66.667 2.29 0.00 37.01 6.46
242 243 4.046938 CGTGAGGTGATATGCTACAACT 57.953 45.455 0.00 0.00 36.73 3.16
243 244 5.183014 CGTGAGGTGATATGCTACAACTA 57.817 43.478 0.00 0.00 34.01 2.24
244 245 4.976731 CGTGAGGTGATATGCTACAACTAC 59.023 45.833 0.00 0.00 34.01 2.73
245 246 4.976731 GTGAGGTGATATGCTACAACTACG 59.023 45.833 0.00 0.00 34.01 3.51
246 247 4.037565 TGAGGTGATATGCTACAACTACGG 59.962 45.833 0.00 0.00 34.01 4.02
247 248 4.212716 AGGTGATATGCTACAACTACGGA 58.787 43.478 0.00 0.00 31.95 4.69
248 249 4.037684 AGGTGATATGCTACAACTACGGAC 59.962 45.833 0.00 0.00 31.95 4.79
249 250 4.202080 GGTGATATGCTACAACTACGGACA 60.202 45.833 0.00 0.00 0.00 4.02
250 251 5.345702 GTGATATGCTACAACTACGGACAA 58.654 41.667 0.00 0.00 0.00 3.18
251 252 5.983720 GTGATATGCTACAACTACGGACAAT 59.016 40.000 0.00 0.00 0.00 2.71
252 253 7.143340 GTGATATGCTACAACTACGGACAATA 58.857 38.462 0.00 0.00 0.00 1.90
253 254 7.114529 GTGATATGCTACAACTACGGACAATAC 59.885 40.741 0.00 0.00 0.00 1.89
254 255 3.761657 TGCTACAACTACGGACAATACG 58.238 45.455 0.00 0.00 37.36 3.06
255 256 3.111098 GCTACAACTACGGACAATACGG 58.889 50.000 0.00 0.00 35.23 4.02
256 257 3.428045 GCTACAACTACGGACAATACGGT 60.428 47.826 0.00 0.00 35.23 4.83
257 258 3.665745 ACAACTACGGACAATACGGTT 57.334 42.857 0.00 0.00 35.23 4.44
258 259 3.993920 ACAACTACGGACAATACGGTTT 58.006 40.909 0.00 0.00 35.23 3.27
259 260 4.379652 ACAACTACGGACAATACGGTTTT 58.620 39.130 0.00 0.00 35.23 2.43
260 261 4.211794 ACAACTACGGACAATACGGTTTTG 59.788 41.667 9.36 9.36 35.23 2.44
261 262 3.328505 ACTACGGACAATACGGTTTTGG 58.671 45.455 14.36 1.61 35.23 3.28
262 263 0.876399 ACGGACAATACGGTTTTGGC 59.124 50.000 14.36 11.61 35.23 4.52
263 264 1.161843 CGGACAATACGGTTTTGGCT 58.838 50.000 15.27 0.00 32.47 4.75
264 265 2.289569 ACGGACAATACGGTTTTGGCTA 60.290 45.455 15.27 0.00 32.47 3.93
265 266 2.350498 CGGACAATACGGTTTTGGCTAG 59.650 50.000 15.27 7.65 32.47 3.42
266 267 2.681344 GGACAATACGGTTTTGGCTAGG 59.319 50.000 15.27 0.00 32.47 3.02
267 268 2.681344 GACAATACGGTTTTGGCTAGGG 59.319 50.000 14.36 0.00 0.00 3.53
268 269 2.306512 ACAATACGGTTTTGGCTAGGGA 59.693 45.455 14.36 0.00 0.00 4.20
269 270 2.681344 CAATACGGTTTTGGCTAGGGAC 59.319 50.000 3.72 0.00 0.00 4.46
270 271 1.350071 TACGGTTTTGGCTAGGGACA 58.650 50.000 0.00 0.00 0.00 4.02
271 272 0.250597 ACGGTTTTGGCTAGGGACAC 60.251 55.000 0.00 0.00 0.00 3.67
272 273 0.958876 CGGTTTTGGCTAGGGACACC 60.959 60.000 0.00 0.00 0.00 4.16
283 284 3.171348 GGACACCTTCCAGCCCTT 58.829 61.111 0.00 0.00 45.10 3.95
284 285 1.002011 GGACACCTTCCAGCCCTTC 60.002 63.158 0.00 0.00 45.10 3.46
285 286 1.492993 GGACACCTTCCAGCCCTTCT 61.493 60.000 0.00 0.00 45.10 2.85
286 287 1.276622 GACACCTTCCAGCCCTTCTA 58.723 55.000 0.00 0.00 0.00 2.10
287 288 1.208293 GACACCTTCCAGCCCTTCTAG 59.792 57.143 0.00 0.00 0.00 2.43
288 289 0.107459 CACCTTCCAGCCCTTCTAGC 60.107 60.000 0.00 0.00 0.00 3.42
289 290 1.275421 ACCTTCCAGCCCTTCTAGCC 61.275 60.000 0.00 0.00 0.00 3.93
290 291 1.274703 CCTTCCAGCCCTTCTAGCCA 61.275 60.000 0.00 0.00 0.00 4.75
291 292 0.179936 CTTCCAGCCCTTCTAGCCAG 59.820 60.000 0.00 0.00 0.00 4.85
292 293 1.274703 TTCCAGCCCTTCTAGCCAGG 61.275 60.000 1.56 1.56 0.00 4.45
293 294 2.191641 CAGCCCTTCTAGCCAGGC 59.808 66.667 1.84 1.84 46.13 4.85
295 296 2.677228 GCCCTTCTAGCCAGGCAA 59.323 61.111 15.80 0.00 45.07 4.52
296 297 1.452833 GCCCTTCTAGCCAGGCAAG 60.453 63.158 15.80 8.67 45.07 4.01
297 298 1.452833 CCCTTCTAGCCAGGCAAGC 60.453 63.158 15.80 0.00 0.00 4.01
298 299 1.606531 CCTTCTAGCCAGGCAAGCT 59.393 57.895 15.80 6.52 44.49 3.74
299 300 0.747283 CCTTCTAGCCAGGCAAGCTG 60.747 60.000 15.80 0.21 41.71 4.24
300 301 1.375098 CTTCTAGCCAGGCAAGCTGC 61.375 60.000 15.80 0.00 41.71 5.25
314 315 3.964875 CTGCACGCGGCCTTGTTT 61.965 61.111 12.47 0.00 43.89 2.83
315 316 2.592001 TGCACGCGGCCTTGTTTA 60.592 55.556 12.47 0.00 43.89 2.01
316 317 2.175811 GCACGCGGCCTTGTTTAG 59.824 61.111 12.47 0.00 36.11 1.85
327 328 2.178912 CTTGTTTAGGAGCGGTTGGA 57.821 50.000 0.00 0.00 0.00 3.53
328 329 2.076863 CTTGTTTAGGAGCGGTTGGAG 58.923 52.381 0.00 0.00 0.00 3.86
329 330 0.323629 TGTTTAGGAGCGGTTGGAGG 59.676 55.000 0.00 0.00 0.00 4.30
330 331 0.323957 GTTTAGGAGCGGTTGGAGGT 59.676 55.000 0.00 0.00 0.00 3.85
331 332 0.611714 TTTAGGAGCGGTTGGAGGTC 59.388 55.000 0.00 0.00 35.57 3.85
332 333 1.601419 TTAGGAGCGGTTGGAGGTCG 61.601 60.000 0.00 0.00 37.02 4.79
333 334 4.452733 GGAGCGGTTGGAGGTCGG 62.453 72.222 0.00 0.00 37.02 4.79
334 335 3.692406 GAGCGGTTGGAGGTCGGT 61.692 66.667 0.00 0.00 37.33 4.69
335 336 3.644399 GAGCGGTTGGAGGTCGGTC 62.644 68.421 0.00 0.00 42.55 4.79
336 337 4.754667 GCGGTTGGAGGTCGGTCC 62.755 72.222 0.00 0.00 37.10 4.46
344 345 4.358810 AGGTCGGTCCTCCTAAGC 57.641 61.111 1.25 0.00 44.42 3.09
345 346 1.381463 AGGTCGGTCCTCCTAAGCC 60.381 63.158 1.25 0.00 44.42 4.35
346 347 2.783288 GGTCGGTCCTCCTAAGCCG 61.783 68.421 0.00 0.00 44.95 5.52
347 348 3.145551 TCGGTCCTCCTAAGCCGC 61.146 66.667 0.00 0.00 43.45 6.53
348 349 4.222847 CGGTCCTCCTAAGCCGCC 62.223 72.222 0.00 0.00 37.69 6.13
349 350 2.764547 GGTCCTCCTAAGCCGCCT 60.765 66.667 0.00 0.00 0.00 5.52
350 351 2.798364 GGTCCTCCTAAGCCGCCTC 61.798 68.421 0.00 0.00 0.00 4.70
351 352 2.833582 TCCTCCTAAGCCGCCTCG 60.834 66.667 0.00 0.00 0.00 4.63
352 353 3.148279 CCTCCTAAGCCGCCTCGT 61.148 66.667 0.00 0.00 0.00 4.18
353 354 2.105128 CTCCTAAGCCGCCTCGTG 59.895 66.667 0.00 0.00 0.00 4.35
354 355 2.678934 TCCTAAGCCGCCTCGTGT 60.679 61.111 0.00 0.00 0.00 4.49
355 356 2.509336 CCTAAGCCGCCTCGTGTG 60.509 66.667 0.00 0.00 0.00 3.82
367 368 2.015736 CTCGTGTGGAGAGGGAAATG 57.984 55.000 0.00 0.00 46.23 2.32
368 369 0.036388 TCGTGTGGAGAGGGAAATGC 60.036 55.000 0.00 0.00 0.00 3.56
369 370 0.036010 CGTGTGGAGAGGGAAATGCT 60.036 55.000 0.00 0.00 0.00 3.79
370 371 1.611673 CGTGTGGAGAGGGAAATGCTT 60.612 52.381 0.00 0.00 0.00 3.91
371 372 2.519013 GTGTGGAGAGGGAAATGCTTT 58.481 47.619 0.00 0.00 0.00 3.51
372 373 2.489722 GTGTGGAGAGGGAAATGCTTTC 59.510 50.000 0.00 0.00 38.94 2.62
373 374 2.108075 TGTGGAGAGGGAAATGCTTTCA 59.892 45.455 9.75 0.00 41.43 2.69
374 375 2.489722 GTGGAGAGGGAAATGCTTTCAC 59.510 50.000 9.75 6.81 43.42 3.18
375 376 2.108075 TGGAGAGGGAAATGCTTTCACA 59.892 45.455 11.72 0.00 45.51 3.58
376 377 3.245371 TGGAGAGGGAAATGCTTTCACAT 60.245 43.478 11.72 2.50 45.51 3.21
377 378 3.379688 GGAGAGGGAAATGCTTTCACATC 59.620 47.826 11.72 9.23 45.51 3.06
378 379 4.268359 GAGAGGGAAATGCTTTCACATCT 58.732 43.478 11.72 11.13 45.51 2.90
379 380 5.431765 GAGAGGGAAATGCTTTCACATCTA 58.568 41.667 11.72 0.00 45.51 1.98
380 381 5.819991 AGAGGGAAATGCTTTCACATCTAA 58.180 37.500 11.72 0.00 45.51 2.10
381 382 6.430007 AGAGGGAAATGCTTTCACATCTAAT 58.570 36.000 11.72 0.00 45.51 1.73
382 383 7.577303 AGAGGGAAATGCTTTCACATCTAATA 58.423 34.615 11.72 0.00 45.51 0.98
383 384 8.223330 AGAGGGAAATGCTTTCACATCTAATAT 58.777 33.333 11.72 0.00 45.51 1.28
384 385 8.773033 AGGGAAATGCTTTCACATCTAATATT 57.227 30.769 11.72 0.00 45.51 1.28
385 386 9.866655 AGGGAAATGCTTTCACATCTAATATTA 57.133 29.630 11.72 0.00 45.51 0.98
417 418 8.789881 TTTATAAGTTTTGGAAATGTCACACG 57.210 30.769 0.00 0.00 0.00 4.49
418 419 4.974368 AAGTTTTGGAAATGTCACACGA 57.026 36.364 0.00 0.00 0.00 4.35
419 420 4.974368 AGTTTTGGAAATGTCACACGAA 57.026 36.364 0.00 0.00 0.00 3.85
420 421 5.317733 AGTTTTGGAAATGTCACACGAAA 57.682 34.783 0.00 0.00 0.00 3.46
421 422 5.715070 AGTTTTGGAAATGTCACACGAAAA 58.285 33.333 0.00 0.00 0.00 2.29
422 423 5.804979 AGTTTTGGAAATGTCACACGAAAAG 59.195 36.000 0.00 0.00 0.00 2.27
423 424 5.568685 TTTGGAAATGTCACACGAAAAGA 57.431 34.783 0.00 0.00 0.00 2.52
424 425 5.568685 TTGGAAATGTCACACGAAAAGAA 57.431 34.783 0.00 0.00 0.00 2.52
425 426 5.568685 TGGAAATGTCACACGAAAAGAAA 57.431 34.783 0.00 0.00 0.00 2.52
426 427 5.955488 TGGAAATGTCACACGAAAAGAAAA 58.045 33.333 0.00 0.00 0.00 2.29
427 428 6.390721 TGGAAATGTCACACGAAAAGAAAAA 58.609 32.000 0.00 0.00 0.00 1.94
457 458 6.367374 AAAAACAGTCTTGGGAAAAAGGAA 57.633 33.333 0.00 0.00 0.00 3.36
458 459 6.367374 AAAACAGTCTTGGGAAAAAGGAAA 57.633 33.333 0.00 0.00 0.00 3.13
459 460 5.339008 AACAGTCTTGGGAAAAAGGAAAC 57.661 39.130 0.00 0.00 0.00 2.78
460 461 4.349365 ACAGTCTTGGGAAAAAGGAAACA 58.651 39.130 0.00 0.00 0.00 2.83
461 462 4.962362 ACAGTCTTGGGAAAAAGGAAACAT 59.038 37.500 0.00 0.00 0.00 2.71
462 463 6.133356 ACAGTCTTGGGAAAAAGGAAACATA 58.867 36.000 0.00 0.00 0.00 2.29
463 464 6.782494 ACAGTCTTGGGAAAAAGGAAACATAT 59.218 34.615 0.00 0.00 0.00 1.78
464 465 7.947890 ACAGTCTTGGGAAAAAGGAAACATATA 59.052 33.333 0.00 0.00 0.00 0.86
465 466 8.802267 CAGTCTTGGGAAAAAGGAAACATATAA 58.198 33.333 0.00 0.00 0.00 0.98
466 467 9.374711 AGTCTTGGGAAAAAGGAAACATATAAA 57.625 29.630 0.00 0.00 0.00 1.40
490 491 4.871933 AAAAAGAAGTTTGGATCGCCAT 57.128 36.364 0.00 0.00 45.46 4.40
491 492 4.440839 AAAAGAAGTTTGGATCGCCATC 57.559 40.909 0.00 0.00 45.46 3.51
492 493 2.787473 AGAAGTTTGGATCGCCATCA 57.213 45.000 0.00 0.00 45.46 3.07
493 494 2.359900 AGAAGTTTGGATCGCCATCAC 58.640 47.619 0.00 0.00 45.46 3.06
494 495 2.083774 GAAGTTTGGATCGCCATCACA 58.916 47.619 0.00 0.00 45.46 3.58
495 496 1.453155 AGTTTGGATCGCCATCACAC 58.547 50.000 0.00 0.00 45.46 3.82
496 497 1.003580 AGTTTGGATCGCCATCACACT 59.996 47.619 0.00 0.00 45.46 3.55
497 498 1.398390 GTTTGGATCGCCATCACACTC 59.602 52.381 0.00 0.00 45.46 3.51
498 499 0.612744 TTGGATCGCCATCACACTCA 59.387 50.000 0.00 0.00 45.46 3.41
499 500 0.832626 TGGATCGCCATCACACTCAT 59.167 50.000 0.00 0.00 39.92 2.90
500 501 1.202568 TGGATCGCCATCACACTCATC 60.203 52.381 0.00 0.00 39.92 2.92
501 502 1.202568 GGATCGCCATCACACTCATCA 60.203 52.381 0.00 0.00 0.00 3.07
502 503 2.554142 GATCGCCATCACACTCATCAA 58.446 47.619 0.00 0.00 0.00 2.57
503 504 2.014335 TCGCCATCACACTCATCAAG 57.986 50.000 0.00 0.00 0.00 3.02
504 505 1.550072 TCGCCATCACACTCATCAAGA 59.450 47.619 0.00 0.00 0.00 3.02
505 506 2.028203 TCGCCATCACACTCATCAAGAA 60.028 45.455 0.00 0.00 0.00 2.52
506 507 2.941064 CGCCATCACACTCATCAAGAAT 59.059 45.455 0.00 0.00 0.00 2.40
507 508 3.002042 CGCCATCACACTCATCAAGAATC 59.998 47.826 0.00 0.00 0.00 2.52
508 509 3.943381 GCCATCACACTCATCAAGAATCA 59.057 43.478 0.00 0.00 0.00 2.57
509 510 4.201891 GCCATCACACTCATCAAGAATCAC 60.202 45.833 0.00 0.00 0.00 3.06
510 511 4.033702 CCATCACACTCATCAAGAATCACG 59.966 45.833 0.00 0.00 0.00 4.35
511 512 3.588955 TCACACTCATCAAGAATCACGG 58.411 45.455 0.00 0.00 0.00 4.94
512 513 3.006859 TCACACTCATCAAGAATCACGGT 59.993 43.478 0.00 0.00 0.00 4.83
513 514 3.748048 CACACTCATCAAGAATCACGGTT 59.252 43.478 0.00 0.00 0.00 4.44
514 515 3.997021 ACACTCATCAAGAATCACGGTTC 59.003 43.478 0.00 0.00 0.00 3.62
515 516 3.996363 CACTCATCAAGAATCACGGTTCA 59.004 43.478 0.00 0.00 0.00 3.18
516 517 4.633126 CACTCATCAAGAATCACGGTTCAT 59.367 41.667 0.00 0.00 0.00 2.57
517 518 4.633126 ACTCATCAAGAATCACGGTTCATG 59.367 41.667 0.00 0.00 0.00 3.07
518 519 3.940852 TCATCAAGAATCACGGTTCATGG 59.059 43.478 0.00 0.00 30.15 3.66
519 520 3.694043 TCAAGAATCACGGTTCATGGA 57.306 42.857 0.00 0.00 30.15 3.41
520 521 3.599343 TCAAGAATCACGGTTCATGGAG 58.401 45.455 0.00 0.00 30.15 3.86
521 522 2.029838 AGAATCACGGTTCATGGAGC 57.970 50.000 0.00 0.00 0.00 4.70
522 523 1.278985 AGAATCACGGTTCATGGAGCA 59.721 47.619 3.67 0.00 0.00 4.26
523 524 2.092753 AGAATCACGGTTCATGGAGCAT 60.093 45.455 3.67 0.00 0.00 3.79
524 525 1.959042 ATCACGGTTCATGGAGCATC 58.041 50.000 3.67 0.00 0.00 3.91
525 526 0.460109 TCACGGTTCATGGAGCATCG 60.460 55.000 3.67 0.00 34.37 3.84
526 527 0.740868 CACGGTTCATGGAGCATCGT 60.741 55.000 3.67 0.00 34.37 3.73
527 528 0.740868 ACGGTTCATGGAGCATCGTG 60.741 55.000 3.67 0.00 34.37 4.35
528 529 0.740868 CGGTTCATGGAGCATCGTGT 60.741 55.000 3.67 0.00 34.37 4.49
529 530 1.453155 GGTTCATGGAGCATCGTGTT 58.547 50.000 0.00 0.00 34.37 3.32
530 531 1.131126 GGTTCATGGAGCATCGTGTTG 59.869 52.381 0.00 0.00 34.37 3.33
531 532 0.804364 TTCATGGAGCATCGTGTTGC 59.196 50.000 0.00 0.00 43.09 4.17
538 539 3.317608 GCATCGTGTTGCTCCAATG 57.682 52.632 0.00 0.00 39.57 2.82
539 540 0.523072 GCATCGTGTTGCTCCAATGT 59.477 50.000 0.00 0.00 39.57 2.71
540 541 1.730121 GCATCGTGTTGCTCCAATGTG 60.730 52.381 0.00 0.00 39.57 3.21
541 542 0.523072 ATCGTGTTGCTCCAATGTGC 59.477 50.000 0.00 0.00 0.00 4.57
542 543 1.081242 CGTGTTGCTCCAATGTGCC 60.081 57.895 0.00 0.00 0.00 5.01
543 544 1.794151 CGTGTTGCTCCAATGTGCCA 61.794 55.000 0.00 0.00 0.00 4.92
544 545 0.388659 GTGTTGCTCCAATGTGCCAA 59.611 50.000 0.00 0.00 0.00 4.52
545 546 0.675083 TGTTGCTCCAATGTGCCAAG 59.325 50.000 0.00 0.00 0.00 3.61
546 547 0.668401 GTTGCTCCAATGTGCCAAGC 60.668 55.000 0.00 0.00 0.00 4.01
547 548 1.114119 TTGCTCCAATGTGCCAAGCA 61.114 50.000 0.00 0.00 40.96 3.91
548 549 1.214589 GCTCCAATGTGCCAAGCAG 59.785 57.895 0.00 0.00 40.08 4.24
549 550 1.530013 GCTCCAATGTGCCAAGCAGT 61.530 55.000 0.00 0.00 40.08 4.40
550 551 0.242825 CTCCAATGTGCCAAGCAGTG 59.757 55.000 0.00 0.00 40.08 3.66
551 552 0.178995 TCCAATGTGCCAAGCAGTGA 60.179 50.000 0.00 0.00 40.08 3.41
552 553 0.675083 CCAATGTGCCAAGCAGTGAA 59.325 50.000 0.00 0.00 40.08 3.18
553 554 1.068895 CCAATGTGCCAAGCAGTGAAA 59.931 47.619 0.00 0.00 40.08 2.69
554 555 2.129607 CAATGTGCCAAGCAGTGAAAC 58.870 47.619 0.00 0.00 40.08 2.78
604 605 3.617538 GCATACCACGTCTCGCGC 61.618 66.667 0.00 0.00 46.11 6.86
633 634 5.028549 TCAGCCAACCTTCTTCATATCTC 57.971 43.478 0.00 0.00 0.00 2.75
648 649 5.052481 TCATATCTCCAATCAAAGCACTCG 58.948 41.667 0.00 0.00 0.00 4.18
672 673 5.768164 GGTCTAAATCCAGAAAGTTGGTTCA 59.232 40.000 0.00 0.00 39.35 3.18
829 848 1.523154 GCATCTCTCTCGCGGATCCT 61.523 60.000 10.75 0.00 0.00 3.24
931 952 1.550072 CCCCTTTCCGCAAATCACATT 59.450 47.619 0.00 0.00 0.00 2.71
964 992 0.623723 GCTCCTCCAACCCCACATTA 59.376 55.000 0.00 0.00 0.00 1.90
1381 1443 3.124806 CGCGACTTGTCTAGTTCTCTGTA 59.875 47.826 0.00 0.00 37.17 2.74
1446 1523 3.683365 ATGTTGCTGGAAATCAAACCC 57.317 42.857 0.00 0.00 0.00 4.11
1447 1524 1.691434 TGTTGCTGGAAATCAAACCCC 59.309 47.619 0.00 0.00 0.00 4.95
1541 1620 3.732721 GCTGTTTCTTCTGTGATGCAAAC 59.267 43.478 0.00 0.00 0.00 2.93
1554 1633 0.735471 TGCAAACTTGTGTGCGCTTA 59.265 45.000 9.73 0.00 43.93 3.09
1555 1634 1.336440 TGCAAACTTGTGTGCGCTTAT 59.664 42.857 9.73 0.00 43.93 1.73
1559 1638 0.798776 ACTTGTGTGCGCTTATGAGC 59.201 50.000 9.73 0.00 45.65 4.26
1579 1672 6.195700 TGAGCTAGATTTTACCAGTAGACCT 58.804 40.000 0.00 0.00 0.00 3.85
1581 1674 7.114866 AGCTAGATTTTACCAGTAGACCTTC 57.885 40.000 0.00 0.00 0.00 3.46
1605 1698 2.704725 ATTGTACTTGGTTGCGCAAG 57.295 45.000 25.78 14.70 43.44 4.01
1634 1727 6.183360 TGTTTATGGCTGAATCATGAACATCC 60.183 38.462 14.90 14.90 42.27 3.51
1660 1798 1.334869 GGTGTTCCTTCTGTTGTGCAG 59.665 52.381 0.00 0.00 46.34 4.41
1691 1829 7.649533 AATTGAGATGGAATTTGTCTGCATA 57.350 32.000 0.00 0.00 0.00 3.14
1718 3046 9.551734 TCATACATCCAGTCTTAGATTGATTTG 57.448 33.333 6.30 3.78 0.00 2.32
1728 3090 9.107177 AGTCTTAGATTGATTTGTTATGCTCAG 57.893 33.333 0.00 0.00 0.00 3.35
1736 3098 4.754372 TTTGTTATGCTCAGCAGAGTTG 57.246 40.909 5.13 0.00 43.65 3.16
1776 3139 2.229062 TCTGAAACTCTCACAGCTACCG 59.771 50.000 0.00 0.00 0.00 4.02
1845 3208 7.384660 AGAATCATCATTTCTGCGTTATCTCTC 59.615 37.037 0.00 0.00 32.30 3.20
1873 3237 8.648968 CGATTTCTAGTTACTCAGAAACCTTTC 58.351 37.037 14.43 9.90 42.03 2.62
1905 3269 0.729116 CGGTGATTCCATGTGCAGAC 59.271 55.000 0.00 0.00 35.57 3.51
2064 3428 4.662145 CAAATCCTGCGGAAATCAGTTAC 58.338 43.478 0.00 0.00 34.34 2.50
2066 3430 1.906574 TCCTGCGGAAATCAGTTACCT 59.093 47.619 0.00 0.00 0.00 3.08
2094 3458 4.010349 GTTCAAGGCCAGTGCTTTAGTAT 58.990 43.478 5.01 0.00 34.65 2.12
2294 3660 5.015515 TGCAGATTACAAAACCATCATCCA 58.984 37.500 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.103208 CGACTCTTATCGGCCAAGCT 59.897 55.000 2.24 0.00 38.47 3.74
1 2 2.594541 CGACTCTTATCGGCCAAGC 58.405 57.895 2.24 0.00 38.47 4.01
8 9 1.065701 CCAGTGGACCGACTCTTATCG 59.934 57.143 1.68 0.00 41.89 2.92
9 10 2.359531 CTCCAGTGGACCGACTCTTATC 59.640 54.545 8.12 0.00 0.00 1.75
10 11 2.379972 CTCCAGTGGACCGACTCTTAT 58.620 52.381 8.12 0.00 0.00 1.73
11 12 1.835494 CTCCAGTGGACCGACTCTTA 58.165 55.000 8.12 0.00 0.00 2.10
12 13 1.536943 GCTCCAGTGGACCGACTCTT 61.537 60.000 8.12 0.00 0.00 2.85
13 14 1.979693 GCTCCAGTGGACCGACTCT 60.980 63.158 8.12 0.00 0.00 3.24
14 15 2.574399 GCTCCAGTGGACCGACTC 59.426 66.667 8.12 0.00 0.00 3.36
15 16 2.997897 GGCTCCAGTGGACCGACT 60.998 66.667 8.12 0.00 0.00 4.18
16 17 2.391724 TTTGGCTCCAGTGGACCGAC 62.392 60.000 8.12 1.89 0.00 4.79
17 18 2.111999 CTTTGGCTCCAGTGGACCGA 62.112 60.000 8.12 11.77 0.00 4.69
18 19 1.672356 CTTTGGCTCCAGTGGACCG 60.672 63.158 8.12 0.06 0.00 4.79
19 20 1.973812 GCTTTGGCTCCAGTGGACC 60.974 63.158 8.12 15.00 35.22 4.46
20 21 1.973812 GGCTTTGGCTCCAGTGGAC 60.974 63.158 8.12 5.48 38.73 4.02
21 22 2.436109 GGCTTTGGCTCCAGTGGA 59.564 61.111 12.40 12.40 38.73 4.02
22 23 3.058160 CGGCTTTGGCTCCAGTGG 61.058 66.667 1.40 1.40 38.73 4.00
23 24 3.058160 CCGGCTTTGGCTCCAGTG 61.058 66.667 0.00 0.00 38.73 3.66
31 32 2.048316 ATTTTGCGCCGGCTTTGG 60.048 55.556 26.68 10.13 40.82 3.28
32 33 1.664333 ACATTTTGCGCCGGCTTTG 60.664 52.632 26.68 10.55 40.82 2.77
33 34 1.664333 CACATTTTGCGCCGGCTTT 60.664 52.632 26.68 0.00 40.82 3.51
34 35 2.049248 CACATTTTGCGCCGGCTT 60.049 55.556 26.68 0.00 40.82 4.35
35 36 2.981560 CTCACATTTTGCGCCGGCT 61.982 57.895 26.68 0.00 40.82 5.52
36 37 2.504681 CTCACATTTTGCGCCGGC 60.505 61.111 19.07 19.07 40.52 6.13
37 38 2.504681 GCTCACATTTTGCGCCGG 60.505 61.111 4.18 0.00 28.85 6.13
38 39 1.512734 GAGCTCACATTTTGCGCCG 60.513 57.895 9.40 0.00 36.52 6.46
39 40 1.512734 CGAGCTCACATTTTGCGCC 60.513 57.895 15.40 0.00 36.52 6.53
40 41 1.512734 CCGAGCTCACATTTTGCGC 60.513 57.895 15.40 0.00 36.06 6.09
41 42 0.238289 AACCGAGCTCACATTTTGCG 59.762 50.000 15.40 0.00 0.00 4.85
42 43 1.266718 TCAACCGAGCTCACATTTTGC 59.733 47.619 15.40 0.00 0.00 3.68
43 44 3.300009 GTTCAACCGAGCTCACATTTTG 58.700 45.455 15.40 8.70 0.00 2.44
44 45 2.293399 GGTTCAACCGAGCTCACATTTT 59.707 45.455 15.40 0.00 0.00 1.82
45 46 1.880027 GGTTCAACCGAGCTCACATTT 59.120 47.619 15.40 0.00 0.00 2.32
46 47 1.072331 AGGTTCAACCGAGCTCACATT 59.928 47.619 15.40 1.14 44.90 2.71
47 48 0.687354 AGGTTCAACCGAGCTCACAT 59.313 50.000 15.40 0.00 44.90 3.21
48 49 0.033504 GAGGTTCAACCGAGCTCACA 59.966 55.000 15.40 0.00 44.90 3.58
49 50 0.318762 AGAGGTTCAACCGAGCTCAC 59.681 55.000 15.40 2.59 44.90 3.51
50 51 0.603569 GAGAGGTTCAACCGAGCTCA 59.396 55.000 15.40 0.00 44.90 4.26
51 52 0.603569 TGAGAGGTTCAACCGAGCTC 59.396 55.000 16.01 16.01 44.90 4.09
52 53 1.001406 CTTGAGAGGTTCAACCGAGCT 59.999 52.381 0.00 0.00 44.90 4.09
53 54 1.000955 TCTTGAGAGGTTCAACCGAGC 59.999 52.381 0.00 0.00 44.90 5.03
54 55 3.516615 GATCTTGAGAGGTTCAACCGAG 58.483 50.000 0.00 0.00 44.90 4.63
55 56 2.233922 GGATCTTGAGAGGTTCAACCGA 59.766 50.000 0.00 0.00 44.90 4.69
56 57 2.028112 TGGATCTTGAGAGGTTCAACCG 60.028 50.000 0.00 0.00 44.90 4.44
57 58 3.703001 TGGATCTTGAGAGGTTCAACC 57.297 47.619 0.00 0.00 40.82 3.77
58 59 4.633565 GTCATGGATCTTGAGAGGTTCAAC 59.366 45.833 0.00 0.00 40.82 3.18
59 60 4.323792 GGTCATGGATCTTGAGAGGTTCAA 60.324 45.833 0.00 0.00 43.40 2.69
60 61 3.198635 GGTCATGGATCTTGAGAGGTTCA 59.801 47.826 0.00 0.00 0.00 3.18
61 62 3.432890 GGGTCATGGATCTTGAGAGGTTC 60.433 52.174 0.00 0.00 0.00 3.62
62 63 2.507471 GGGTCATGGATCTTGAGAGGTT 59.493 50.000 0.00 0.00 0.00 3.50
63 64 2.122768 GGGTCATGGATCTTGAGAGGT 58.877 52.381 0.00 0.00 0.00 3.85
64 65 1.419387 GGGGTCATGGATCTTGAGAGG 59.581 57.143 0.00 0.00 0.00 3.69
65 66 2.121948 TGGGGTCATGGATCTTGAGAG 58.878 52.381 0.00 0.00 0.00 3.20
66 67 2.268796 TGGGGTCATGGATCTTGAGA 57.731 50.000 0.00 0.00 0.00 3.27
67 68 3.019564 GTTTGGGGTCATGGATCTTGAG 58.980 50.000 0.00 0.00 0.00 3.02
68 69 2.291540 GGTTTGGGGTCATGGATCTTGA 60.292 50.000 0.00 0.00 0.00 3.02
69 70 2.102578 GGTTTGGGGTCATGGATCTTG 58.897 52.381 0.00 0.00 0.00 3.02
70 71 1.007118 GGGTTTGGGGTCATGGATCTT 59.993 52.381 0.00 0.00 0.00 2.40
71 72 0.631212 GGGTTTGGGGTCATGGATCT 59.369 55.000 0.00 0.00 0.00 2.75
72 73 0.397114 GGGGTTTGGGGTCATGGATC 60.397 60.000 0.00 0.00 0.00 3.36
73 74 1.703461 GGGGTTTGGGGTCATGGAT 59.297 57.895 0.00 0.00 0.00 3.41
74 75 2.553330 GGGGGTTTGGGGTCATGGA 61.553 63.158 0.00 0.00 0.00 3.41
75 76 2.038813 GGGGGTTTGGGGTCATGG 59.961 66.667 0.00 0.00 0.00 3.66
98 99 2.202987 CGCTCTGCTGGCCTAAGG 60.203 66.667 3.32 0.00 0.00 2.69
99 100 1.520342 GTCGCTCTGCTGGCCTAAG 60.520 63.158 3.32 0.00 0.00 2.18
100 101 2.579201 GTCGCTCTGCTGGCCTAA 59.421 61.111 3.32 0.00 0.00 2.69
101 102 3.461773 GGTCGCTCTGCTGGCCTA 61.462 66.667 3.32 0.00 0.00 3.93
113 114 1.805945 CTGGTCAACTAGCGGTCGC 60.806 63.158 7.32 7.32 42.33 5.19
114 115 0.179161 CTCTGGTCAACTAGCGGTCG 60.179 60.000 0.00 0.00 33.46 4.79
115 116 1.133407 CTCTCTGGTCAACTAGCGGTC 59.867 57.143 0.00 0.00 33.46 4.79
116 117 1.178276 CTCTCTGGTCAACTAGCGGT 58.822 55.000 0.00 0.00 33.46 5.68
117 118 1.135257 CACTCTCTGGTCAACTAGCGG 60.135 57.143 0.00 0.00 0.00 5.52
118 119 1.135257 CCACTCTCTGGTCAACTAGCG 60.135 57.143 0.00 0.00 34.90 4.26
119 120 1.404851 GCCACTCTCTGGTCAACTAGC 60.405 57.143 0.00 0.00 42.99 3.42
120 121 1.205893 GGCCACTCTCTGGTCAACTAG 59.794 57.143 0.00 0.00 45.18 2.57
121 122 1.267121 GGCCACTCTCTGGTCAACTA 58.733 55.000 0.00 0.00 45.18 2.24
122 123 2.062070 GGCCACTCTCTGGTCAACT 58.938 57.895 0.00 0.00 45.18 3.16
123 124 4.703703 GGCCACTCTCTGGTCAAC 57.296 61.111 0.00 0.00 45.18 3.18
126 127 1.294780 CAGTGGCCACTCTCTGGTC 59.705 63.158 35.79 5.66 46.19 4.02
127 128 2.219875 CCAGTGGCCACTCTCTGGT 61.220 63.158 35.79 10.94 42.99 4.00
128 129 1.270414 ATCCAGTGGCCACTCTCTGG 61.270 60.000 35.79 31.31 46.00 3.86
129 130 0.107800 CATCCAGTGGCCACTCTCTG 60.108 60.000 35.79 25.66 40.20 3.35
130 131 1.908340 GCATCCAGTGGCCACTCTCT 61.908 60.000 35.79 19.14 40.20 3.10
131 132 1.451028 GCATCCAGTGGCCACTCTC 60.451 63.158 35.79 17.82 40.20 3.20
132 133 1.569030 ATGCATCCAGTGGCCACTCT 61.569 55.000 35.79 19.89 40.20 3.24
133 134 1.077212 ATGCATCCAGTGGCCACTC 60.077 57.895 35.79 23.51 40.20 3.51
134 135 1.077212 GATGCATCCAGTGGCCACT 60.077 57.895 33.20 33.20 43.61 4.00
135 136 2.123428 GGATGCATCCAGTGGCCAC 61.123 63.158 35.93 29.22 46.38 5.01
136 137 2.276409 GGATGCATCCAGTGGCCA 59.724 61.111 35.93 0.00 46.38 5.36
145 146 1.668337 CGATGACTCCGAGGATGCATC 60.668 57.143 18.81 18.81 34.32 3.91
146 147 0.316522 CGATGACTCCGAGGATGCAT 59.683 55.000 0.00 0.00 0.00 3.96
147 148 1.735973 CGATGACTCCGAGGATGCA 59.264 57.895 0.00 0.00 0.00 3.96
148 149 1.663074 GCGATGACTCCGAGGATGC 60.663 63.158 0.00 0.00 0.00 3.91
149 150 1.006805 GGCGATGACTCCGAGGATG 60.007 63.158 0.00 0.00 0.00 3.51
150 151 1.455773 TGGCGATGACTCCGAGGAT 60.456 57.895 0.00 0.00 0.00 3.24
151 152 2.044352 TGGCGATGACTCCGAGGA 60.044 61.111 0.00 0.00 0.00 3.71
152 153 2.105128 GTGGCGATGACTCCGAGG 59.895 66.667 0.00 0.00 0.00 4.63
153 154 1.517257 GTGTGGCGATGACTCCGAG 60.517 63.158 0.00 0.00 0.00 4.63
154 155 2.571757 GTGTGGCGATGACTCCGA 59.428 61.111 0.00 0.00 0.00 4.55
155 156 2.509336 GGTGTGGCGATGACTCCG 60.509 66.667 0.00 0.00 0.00 4.63
156 157 1.448540 CTGGTGTGGCGATGACTCC 60.449 63.158 0.00 0.00 0.00 3.85
157 158 0.176680 ATCTGGTGTGGCGATGACTC 59.823 55.000 0.00 0.00 0.00 3.36
158 159 0.107993 CATCTGGTGTGGCGATGACT 60.108 55.000 0.00 0.00 37.35 3.41
159 160 0.108186 TCATCTGGTGTGGCGATGAC 60.108 55.000 0.00 0.00 38.77 3.06
160 161 0.612744 TTCATCTGGTGTGGCGATGA 59.387 50.000 0.00 0.00 41.09 2.92
161 162 1.012086 CTTCATCTGGTGTGGCGATG 58.988 55.000 0.00 0.00 36.70 3.84
162 163 0.615331 ACTTCATCTGGTGTGGCGAT 59.385 50.000 0.00 0.00 0.00 4.58
163 164 0.396435 AACTTCATCTGGTGTGGCGA 59.604 50.000 0.00 0.00 0.00 5.54
164 165 0.518636 CAACTTCATCTGGTGTGGCG 59.481 55.000 0.00 0.00 0.00 5.69
165 166 0.242017 GCAACTTCATCTGGTGTGGC 59.758 55.000 0.00 0.00 0.00 5.01
166 167 0.518636 CGCAACTTCATCTGGTGTGG 59.481 55.000 0.00 0.00 0.00 4.17
167 168 1.462283 CTCGCAACTTCATCTGGTGTG 59.538 52.381 0.00 0.00 0.00 3.82
168 169 1.800805 CTCGCAACTTCATCTGGTGT 58.199 50.000 0.00 0.00 0.00 4.16
169 170 0.445436 GCTCGCAACTTCATCTGGTG 59.555 55.000 0.00 0.00 0.00 4.17
170 171 0.322975 AGCTCGCAACTTCATCTGGT 59.677 50.000 0.00 0.00 0.00 4.00
171 172 1.129998 CAAGCTCGCAACTTCATCTGG 59.870 52.381 0.00 0.00 0.00 3.86
172 173 1.802960 ACAAGCTCGCAACTTCATCTG 59.197 47.619 0.00 0.00 0.00 2.90
173 174 1.802960 CACAAGCTCGCAACTTCATCT 59.197 47.619 0.00 0.00 0.00 2.90
174 175 1.800586 TCACAAGCTCGCAACTTCATC 59.199 47.619 0.00 0.00 0.00 2.92
175 176 1.882912 TCACAAGCTCGCAACTTCAT 58.117 45.000 0.00 0.00 0.00 2.57
176 177 1.882912 ATCACAAGCTCGCAACTTCA 58.117 45.000 0.00 0.00 0.00 3.02
177 178 2.977405 AATCACAAGCTCGCAACTTC 57.023 45.000 0.00 0.00 0.00 3.01
178 179 3.550842 GGAAAATCACAAGCTCGCAACTT 60.551 43.478 0.00 0.00 0.00 2.66
179 180 2.030805 GGAAAATCACAAGCTCGCAACT 60.031 45.455 0.00 0.00 0.00 3.16
180 181 2.319472 GGAAAATCACAAGCTCGCAAC 58.681 47.619 0.00 0.00 0.00 4.17
181 182 1.269448 GGGAAAATCACAAGCTCGCAA 59.731 47.619 0.00 0.00 0.00 4.85
182 183 0.881118 GGGAAAATCACAAGCTCGCA 59.119 50.000 0.00 0.00 0.00 5.10
183 184 0.881118 TGGGAAAATCACAAGCTCGC 59.119 50.000 0.00 0.00 0.00 5.03
184 185 1.470098 CCTGGGAAAATCACAAGCTCG 59.530 52.381 0.00 0.00 0.00 5.03
185 186 2.519013 ACCTGGGAAAATCACAAGCTC 58.481 47.619 0.00 0.00 0.00 4.09
186 187 2.683211 ACCTGGGAAAATCACAAGCT 57.317 45.000 0.00 0.00 0.00 3.74
187 188 3.367395 GCTTACCTGGGAAAATCACAAGC 60.367 47.826 0.00 0.00 0.00 4.01
188 189 3.826157 TGCTTACCTGGGAAAATCACAAG 59.174 43.478 0.00 0.00 0.00 3.16
189 190 3.826157 CTGCTTACCTGGGAAAATCACAA 59.174 43.478 0.00 0.00 0.00 3.33
190 191 3.181434 ACTGCTTACCTGGGAAAATCACA 60.181 43.478 0.00 0.00 0.00 3.58
191 192 3.191371 CACTGCTTACCTGGGAAAATCAC 59.809 47.826 0.00 0.00 0.00 3.06
192 193 3.420893 CACTGCTTACCTGGGAAAATCA 58.579 45.455 0.00 0.00 0.00 2.57
193 194 2.755103 CCACTGCTTACCTGGGAAAATC 59.245 50.000 0.00 0.00 0.00 2.17
194 195 2.807676 CCACTGCTTACCTGGGAAAAT 58.192 47.619 0.00 0.00 0.00 1.82
195 196 2.286365 CCACTGCTTACCTGGGAAAA 57.714 50.000 0.00 0.00 0.00 2.29
199 200 1.604378 CTCCCACTGCTTACCTGGG 59.396 63.158 0.00 0.00 45.58 4.45
200 201 1.078143 GCTCCCACTGCTTACCTGG 60.078 63.158 0.00 0.00 0.00 4.45
201 202 1.448540 CGCTCCCACTGCTTACCTG 60.449 63.158 0.00 0.00 0.00 4.00
202 203 2.982130 CGCTCCCACTGCTTACCT 59.018 61.111 0.00 0.00 0.00 3.08
203 204 2.820037 GCGCTCCCACTGCTTACC 60.820 66.667 0.00 0.00 0.00 2.85
204 205 2.820037 GGCGCTCCCACTGCTTAC 60.820 66.667 7.64 0.00 0.00 2.34
205 206 4.451150 CGGCGCTCCCACTGCTTA 62.451 66.667 7.64 0.00 0.00 3.09
214 215 2.088674 ATATCACCTCACGGCGCTCC 62.089 60.000 6.90 0.00 0.00 4.70
215 216 0.941463 CATATCACCTCACGGCGCTC 60.941 60.000 6.90 0.00 0.00 5.03
216 217 1.068083 CATATCACCTCACGGCGCT 59.932 57.895 6.90 0.00 0.00 5.92
217 218 2.598632 GCATATCACCTCACGGCGC 61.599 63.158 6.90 0.00 0.00 6.53
218 219 0.313987 TAGCATATCACCTCACGGCG 59.686 55.000 4.80 4.80 0.00 6.46
219 220 1.068588 TGTAGCATATCACCTCACGGC 59.931 52.381 0.00 0.00 0.00 5.68
220 221 3.123804 GTTGTAGCATATCACCTCACGG 58.876 50.000 0.00 0.00 0.00 4.94
221 222 4.046938 AGTTGTAGCATATCACCTCACG 57.953 45.455 0.00 0.00 0.00 4.35
222 223 4.976731 CGTAGTTGTAGCATATCACCTCAC 59.023 45.833 0.00 0.00 0.00 3.51
223 224 4.037565 CCGTAGTTGTAGCATATCACCTCA 59.962 45.833 0.00 0.00 0.00 3.86
224 225 4.277672 TCCGTAGTTGTAGCATATCACCTC 59.722 45.833 0.00 0.00 0.00 3.85
225 226 4.037684 GTCCGTAGTTGTAGCATATCACCT 59.962 45.833 0.00 0.00 0.00 4.00
226 227 4.202080 TGTCCGTAGTTGTAGCATATCACC 60.202 45.833 0.00 0.00 0.00 4.02
227 228 4.928601 TGTCCGTAGTTGTAGCATATCAC 58.071 43.478 0.00 0.00 0.00 3.06
228 229 5.585820 TTGTCCGTAGTTGTAGCATATCA 57.414 39.130 0.00 0.00 0.00 2.15
229 230 6.304922 CGTATTGTCCGTAGTTGTAGCATATC 59.695 42.308 0.00 0.00 0.00 1.63
230 231 6.147581 CGTATTGTCCGTAGTTGTAGCATAT 58.852 40.000 0.00 0.00 0.00 1.78
231 232 5.506151 CCGTATTGTCCGTAGTTGTAGCATA 60.506 44.000 0.00 0.00 0.00 3.14
232 233 4.357142 CGTATTGTCCGTAGTTGTAGCAT 58.643 43.478 0.00 0.00 0.00 3.79
233 234 3.427909 CCGTATTGTCCGTAGTTGTAGCA 60.428 47.826 0.00 0.00 0.00 3.49
234 235 3.111098 CCGTATTGTCCGTAGTTGTAGC 58.889 50.000 0.00 0.00 0.00 3.58
235 236 4.361451 ACCGTATTGTCCGTAGTTGTAG 57.639 45.455 0.00 0.00 0.00 2.74
236 237 4.782019 AACCGTATTGTCCGTAGTTGTA 57.218 40.909 0.00 0.00 0.00 2.41
237 238 3.665745 AACCGTATTGTCCGTAGTTGT 57.334 42.857 0.00 0.00 0.00 3.32
238 239 4.377635 CCAAAACCGTATTGTCCGTAGTTG 60.378 45.833 0.00 0.00 0.00 3.16
239 240 3.747529 CCAAAACCGTATTGTCCGTAGTT 59.252 43.478 0.00 0.00 0.00 2.24
240 241 3.328505 CCAAAACCGTATTGTCCGTAGT 58.671 45.455 0.00 0.00 0.00 2.73
241 242 2.094734 GCCAAAACCGTATTGTCCGTAG 59.905 50.000 0.00 0.00 0.00 3.51
242 243 2.075338 GCCAAAACCGTATTGTCCGTA 58.925 47.619 0.00 0.00 0.00 4.02
243 244 0.876399 GCCAAAACCGTATTGTCCGT 59.124 50.000 0.00 0.00 0.00 4.69
244 245 1.161843 AGCCAAAACCGTATTGTCCG 58.838 50.000 0.00 0.00 0.00 4.79
245 246 2.681344 CCTAGCCAAAACCGTATTGTCC 59.319 50.000 0.00 0.00 0.00 4.02
246 247 2.681344 CCCTAGCCAAAACCGTATTGTC 59.319 50.000 0.00 0.00 0.00 3.18
247 248 2.306512 TCCCTAGCCAAAACCGTATTGT 59.693 45.455 0.00 0.00 0.00 2.71
248 249 2.681344 GTCCCTAGCCAAAACCGTATTG 59.319 50.000 0.00 0.00 0.00 1.90
249 250 2.306512 TGTCCCTAGCCAAAACCGTATT 59.693 45.455 0.00 0.00 0.00 1.89
250 251 1.910671 TGTCCCTAGCCAAAACCGTAT 59.089 47.619 0.00 0.00 0.00 3.06
251 252 1.002315 GTGTCCCTAGCCAAAACCGTA 59.998 52.381 0.00 0.00 0.00 4.02
252 253 0.250597 GTGTCCCTAGCCAAAACCGT 60.251 55.000 0.00 0.00 0.00 4.83
253 254 0.958876 GGTGTCCCTAGCCAAAACCG 60.959 60.000 0.00 0.00 0.00 4.44
254 255 0.404426 AGGTGTCCCTAGCCAAAACC 59.596 55.000 0.00 0.00 40.19 3.27
255 256 2.160205 GAAGGTGTCCCTAGCCAAAAC 58.840 52.381 0.00 0.00 41.56 2.43
256 257 1.074889 GGAAGGTGTCCCTAGCCAAAA 59.925 52.381 0.00 0.00 41.56 2.44
257 258 0.696501 GGAAGGTGTCCCTAGCCAAA 59.303 55.000 0.00 0.00 41.56 3.28
258 259 2.383608 GGAAGGTGTCCCTAGCCAA 58.616 57.895 0.00 0.00 41.56 4.52
259 260 4.147135 GGAAGGTGTCCCTAGCCA 57.853 61.111 0.00 0.00 41.56 4.75
263 264 3.618033 AAGGGCTGGAAGGTGTCCCTA 62.618 57.143 0.00 0.00 46.08 3.53
267 268 1.208293 CTAGAAGGGCTGGAAGGTGTC 59.792 57.143 0.00 0.00 0.00 3.67
268 269 1.280457 CTAGAAGGGCTGGAAGGTGT 58.720 55.000 0.00 0.00 0.00 4.16
269 270 0.107459 GCTAGAAGGGCTGGAAGGTG 60.107 60.000 0.00 0.00 0.00 4.00
270 271 1.275421 GGCTAGAAGGGCTGGAAGGT 61.275 60.000 0.00 0.00 0.00 3.50
271 272 1.274703 TGGCTAGAAGGGCTGGAAGG 61.275 60.000 0.00 0.00 0.00 3.46
272 273 0.179936 CTGGCTAGAAGGGCTGGAAG 59.820 60.000 0.00 0.00 0.00 3.46
273 274 2.300996 CTGGCTAGAAGGGCTGGAA 58.699 57.895 0.00 0.00 0.00 3.53
274 275 4.056805 CTGGCTAGAAGGGCTGGA 57.943 61.111 0.00 0.00 0.00 3.86
275 276 2.914289 CCTGGCTAGAAGGGCTGG 59.086 66.667 0.00 0.00 42.31 4.85
276 277 2.191641 GCCTGGCTAGAAGGGCTG 59.808 66.667 12.43 0.00 41.20 4.85
277 278 1.919600 CTTGCCTGGCTAGAAGGGCT 61.920 60.000 23.14 0.00 44.36 5.19
278 279 1.452833 CTTGCCTGGCTAGAAGGGC 60.453 63.158 23.14 12.04 44.31 5.19
279 280 1.452833 GCTTGCCTGGCTAGAAGGG 60.453 63.158 29.93 8.00 33.57 3.95
280 281 0.747283 CAGCTTGCCTGGCTAGAAGG 60.747 60.000 29.93 15.66 38.03 3.46
281 282 1.375098 GCAGCTTGCCTGGCTAGAAG 61.375 60.000 29.93 20.67 42.03 2.85
282 283 1.377725 GCAGCTTGCCTGGCTAGAA 60.378 57.895 29.93 11.62 42.03 2.10
283 284 2.270205 GCAGCTTGCCTGGCTAGA 59.730 61.111 29.93 11.38 42.03 2.43
284 285 2.045634 TGCAGCTTGCCTGGCTAG 60.046 61.111 23.20 23.20 44.23 3.42
285 286 2.360350 GTGCAGCTTGCCTGGCTA 60.360 61.111 21.03 11.84 44.23 3.93
297 298 2.513065 CTAAACAAGGCCGCGTGCAG 62.513 60.000 18.87 11.44 43.89 4.41
298 299 2.592001 TAAACAAGGCCGCGTGCA 60.592 55.556 18.87 0.00 43.89 4.57
299 300 2.175811 CTAAACAAGGCCGCGTGC 59.824 61.111 4.92 8.33 40.16 5.34
300 301 1.635663 CTCCTAAACAAGGCCGCGTG 61.636 60.000 4.92 0.00 46.10 5.34
301 302 1.375523 CTCCTAAACAAGGCCGCGT 60.376 57.895 4.92 0.00 46.10 6.01
302 303 2.750888 GCTCCTAAACAAGGCCGCG 61.751 63.158 0.00 0.00 46.10 6.46
303 304 2.750888 CGCTCCTAAACAAGGCCGC 61.751 63.158 0.00 0.00 46.10 6.53
304 305 2.106683 CCGCTCCTAAACAAGGCCG 61.107 63.158 0.00 0.00 46.10 6.13
305 306 0.608308 AACCGCTCCTAAACAAGGCC 60.608 55.000 0.00 0.00 46.10 5.19
306 307 0.521735 CAACCGCTCCTAAACAAGGC 59.478 55.000 0.00 0.00 46.10 4.35
308 309 2.076863 CTCCAACCGCTCCTAAACAAG 58.923 52.381 0.00 0.00 0.00 3.16
309 310 1.271163 CCTCCAACCGCTCCTAAACAA 60.271 52.381 0.00 0.00 0.00 2.83
310 311 0.323629 CCTCCAACCGCTCCTAAACA 59.676 55.000 0.00 0.00 0.00 2.83
311 312 0.323957 ACCTCCAACCGCTCCTAAAC 59.676 55.000 0.00 0.00 0.00 2.01
312 313 0.611714 GACCTCCAACCGCTCCTAAA 59.388 55.000 0.00 0.00 0.00 1.85
313 314 1.601419 CGACCTCCAACCGCTCCTAA 61.601 60.000 0.00 0.00 0.00 2.69
314 315 2.050350 CGACCTCCAACCGCTCCTA 61.050 63.158 0.00 0.00 0.00 2.94
315 316 3.382832 CGACCTCCAACCGCTCCT 61.383 66.667 0.00 0.00 0.00 3.69
316 317 4.452733 CCGACCTCCAACCGCTCC 62.453 72.222 0.00 0.00 0.00 4.70
317 318 3.644399 GACCGACCTCCAACCGCTC 62.644 68.421 0.00 0.00 0.00 5.03
318 319 3.692406 GACCGACCTCCAACCGCT 61.692 66.667 0.00 0.00 0.00 5.52
319 320 4.754667 GGACCGACCTCCAACCGC 62.755 72.222 0.00 0.00 35.41 5.68
328 329 3.218227 GGCTTAGGAGGACCGACC 58.782 66.667 3.08 3.08 41.83 4.79
332 333 2.764547 AGGCGGCTTAGGAGGACC 60.765 66.667 5.25 0.00 0.00 4.46
333 334 2.816012 GAGGCGGCTTAGGAGGAC 59.184 66.667 14.76 0.00 0.00 3.85
334 335 2.833582 CGAGGCGGCTTAGGAGGA 60.834 66.667 14.76 0.00 0.00 3.71
335 336 3.148279 ACGAGGCGGCTTAGGAGG 61.148 66.667 14.76 1.28 0.00 4.30
336 337 2.105128 CACGAGGCGGCTTAGGAG 59.895 66.667 14.76 5.40 0.00 3.69
337 338 2.678934 ACACGAGGCGGCTTAGGA 60.679 61.111 14.76 0.00 0.00 2.94
338 339 2.509336 CACACGAGGCGGCTTAGG 60.509 66.667 14.76 8.56 0.00 2.69
339 340 2.509336 CCACACGAGGCGGCTTAG 60.509 66.667 14.76 13.44 0.00 2.18
340 341 2.992689 TCCACACGAGGCGGCTTA 60.993 61.111 14.76 0.00 0.00 3.09
341 342 4.379243 CTCCACACGAGGCGGCTT 62.379 66.667 14.76 0.00 34.67 4.35
343 344 4.803426 CTCTCCACACGAGGCGGC 62.803 72.222 0.00 0.00 39.30 6.53
344 345 4.135153 CCTCTCCACACGAGGCGG 62.135 72.222 0.00 0.00 41.39 6.13
345 346 4.135153 CCCTCTCCACACGAGGCG 62.135 72.222 0.58 0.00 45.37 5.52
346 347 1.827399 TTTCCCTCTCCACACGAGGC 61.827 60.000 0.58 0.00 45.37 4.70
347 348 0.905357 ATTTCCCTCTCCACACGAGG 59.095 55.000 0.00 0.00 46.11 4.63
348 349 2.009042 GCATTTCCCTCTCCACACGAG 61.009 57.143 0.00 0.00 40.30 4.18
349 350 0.036388 GCATTTCCCTCTCCACACGA 60.036 55.000 0.00 0.00 0.00 4.35
350 351 0.036010 AGCATTTCCCTCTCCACACG 60.036 55.000 0.00 0.00 0.00 4.49
351 352 2.206576 AAGCATTTCCCTCTCCACAC 57.793 50.000 0.00 0.00 0.00 3.82
352 353 2.978156 AAAGCATTTCCCTCTCCACA 57.022 45.000 0.00 0.00 27.08 4.17
391 392 9.239002 CGTGTGACATTTCCAAAACTTATAAAA 57.761 29.630 0.00 0.00 0.00 1.52
392 393 8.622157 TCGTGTGACATTTCCAAAACTTATAAA 58.378 29.630 0.00 0.00 0.00 1.40
393 394 8.155821 TCGTGTGACATTTCCAAAACTTATAA 57.844 30.769 0.00 0.00 0.00 0.98
394 395 7.731882 TCGTGTGACATTTCCAAAACTTATA 57.268 32.000 0.00 0.00 0.00 0.98
395 396 6.627395 TCGTGTGACATTTCCAAAACTTAT 57.373 33.333 0.00 0.00 0.00 1.73
396 397 6.438259 TTCGTGTGACATTTCCAAAACTTA 57.562 33.333 0.00 0.00 0.00 2.24
397 398 4.974368 TCGTGTGACATTTCCAAAACTT 57.026 36.364 0.00 0.00 0.00 2.66
398 399 4.974368 TTCGTGTGACATTTCCAAAACT 57.026 36.364 0.00 0.00 0.00 2.66
399 400 5.802956 TCTTTTCGTGTGACATTTCCAAAAC 59.197 36.000 0.00 0.00 0.00 2.43
400 401 5.955488 TCTTTTCGTGTGACATTTCCAAAA 58.045 33.333 0.00 0.00 0.00 2.44
401 402 5.568685 TCTTTTCGTGTGACATTTCCAAA 57.431 34.783 0.00 0.00 0.00 3.28
402 403 5.568685 TTCTTTTCGTGTGACATTTCCAA 57.431 34.783 0.00 0.00 0.00 3.53
403 404 5.568685 TTTCTTTTCGTGTGACATTTCCA 57.431 34.783 0.00 0.00 0.00 3.53
404 405 6.879188 TTTTTCTTTTCGTGTGACATTTCC 57.121 33.333 0.00 0.00 0.00 3.13
434 435 6.367374 TTCCTTTTTCCCAAGACTGTTTTT 57.633 33.333 0.00 0.00 0.00 1.94
435 436 6.170506 GTTTCCTTTTTCCCAAGACTGTTTT 58.829 36.000 0.00 0.00 0.00 2.43
436 437 5.247337 TGTTTCCTTTTTCCCAAGACTGTTT 59.753 36.000 0.00 0.00 0.00 2.83
437 438 4.775253 TGTTTCCTTTTTCCCAAGACTGTT 59.225 37.500 0.00 0.00 0.00 3.16
438 439 4.349365 TGTTTCCTTTTTCCCAAGACTGT 58.651 39.130 0.00 0.00 0.00 3.55
439 440 5.535753 ATGTTTCCTTTTTCCCAAGACTG 57.464 39.130 0.00 0.00 0.00 3.51
440 441 8.950007 TTATATGTTTCCTTTTTCCCAAGACT 57.050 30.769 0.00 0.00 0.00 3.24
481 482 1.202568 TGATGAGTGTGATGGCGATCC 60.203 52.381 6.23 0.00 0.00 3.36
482 483 2.229675 TGATGAGTGTGATGGCGATC 57.770 50.000 1.08 1.08 0.00 3.69
483 484 2.169144 TCTTGATGAGTGTGATGGCGAT 59.831 45.455 0.00 0.00 0.00 4.58
484 485 1.550072 TCTTGATGAGTGTGATGGCGA 59.450 47.619 0.00 0.00 0.00 5.54
485 486 2.014335 TCTTGATGAGTGTGATGGCG 57.986 50.000 0.00 0.00 0.00 5.69
486 487 3.943381 TGATTCTTGATGAGTGTGATGGC 59.057 43.478 0.00 0.00 0.00 4.40
487 488 4.033702 CGTGATTCTTGATGAGTGTGATGG 59.966 45.833 0.00 0.00 0.00 3.51
488 489 4.033702 CCGTGATTCTTGATGAGTGTGATG 59.966 45.833 0.00 0.00 0.00 3.07
489 490 4.186926 CCGTGATTCTTGATGAGTGTGAT 58.813 43.478 0.00 0.00 0.00 3.06
490 491 3.006859 ACCGTGATTCTTGATGAGTGTGA 59.993 43.478 0.00 0.00 0.00 3.58
491 492 3.329386 ACCGTGATTCTTGATGAGTGTG 58.671 45.455 0.00 0.00 0.00 3.82
492 493 3.685139 ACCGTGATTCTTGATGAGTGT 57.315 42.857 0.00 0.00 0.00 3.55
493 494 3.996363 TGAACCGTGATTCTTGATGAGTG 59.004 43.478 0.00 0.00 0.00 3.51
494 495 4.271696 TGAACCGTGATTCTTGATGAGT 57.728 40.909 0.00 0.00 0.00 3.41
495 496 4.034858 CCATGAACCGTGATTCTTGATGAG 59.965 45.833 0.00 0.00 36.38 2.90
496 497 3.940852 CCATGAACCGTGATTCTTGATGA 59.059 43.478 0.00 0.00 36.38 2.92
497 498 3.940852 TCCATGAACCGTGATTCTTGATG 59.059 43.478 0.00 0.00 36.38 3.07
498 499 4.194640 CTCCATGAACCGTGATTCTTGAT 58.805 43.478 0.00 0.00 36.38 2.57
499 500 3.599343 CTCCATGAACCGTGATTCTTGA 58.401 45.455 0.00 0.00 36.38 3.02
500 501 2.096496 GCTCCATGAACCGTGATTCTTG 59.904 50.000 0.00 0.00 34.88 3.02
501 502 2.290260 TGCTCCATGAACCGTGATTCTT 60.290 45.455 0.00 0.00 0.00 2.52
502 503 1.278985 TGCTCCATGAACCGTGATTCT 59.721 47.619 0.00 0.00 0.00 2.40
503 504 1.737838 TGCTCCATGAACCGTGATTC 58.262 50.000 0.00 0.00 0.00 2.52
504 505 2.292267 GATGCTCCATGAACCGTGATT 58.708 47.619 0.00 0.00 0.00 2.57
505 506 1.807755 CGATGCTCCATGAACCGTGAT 60.808 52.381 0.00 0.00 0.00 3.06
506 507 0.460109 CGATGCTCCATGAACCGTGA 60.460 55.000 0.00 0.00 0.00 4.35
507 508 0.740868 ACGATGCTCCATGAACCGTG 60.741 55.000 0.00 0.00 0.00 4.94
508 509 0.740868 CACGATGCTCCATGAACCGT 60.741 55.000 0.00 0.00 0.00 4.83
509 510 0.740868 ACACGATGCTCCATGAACCG 60.741 55.000 0.00 0.00 0.00 4.44
510 511 1.131126 CAACACGATGCTCCATGAACC 59.869 52.381 0.00 0.00 0.00 3.62
511 512 1.466360 GCAACACGATGCTCCATGAAC 60.466 52.381 0.00 0.00 43.06 3.18
512 513 0.804364 GCAACACGATGCTCCATGAA 59.196 50.000 0.00 0.00 43.06 2.57
513 514 2.470156 GCAACACGATGCTCCATGA 58.530 52.632 0.00 0.00 43.06 3.07
520 521 0.523072 ACATTGGAGCAACACGATGC 59.477 50.000 0.00 0.00 46.78 3.91
521 522 1.730121 GCACATTGGAGCAACACGATG 60.730 52.381 0.00 0.00 35.16 3.84
522 523 0.523072 GCACATTGGAGCAACACGAT 59.477 50.000 0.00 0.00 0.00 3.73
523 524 1.514678 GGCACATTGGAGCAACACGA 61.515 55.000 0.00 0.00 31.64 4.35
524 525 1.081242 GGCACATTGGAGCAACACG 60.081 57.895 5.84 0.00 31.64 4.49
525 526 0.388659 TTGGCACATTGGAGCAACAC 59.611 50.000 5.84 0.00 39.30 3.32
526 527 0.675083 CTTGGCACATTGGAGCAACA 59.325 50.000 5.84 0.00 39.30 3.33
527 528 0.668401 GCTTGGCACATTGGAGCAAC 60.668 55.000 1.88 0.00 38.26 4.17
528 529 1.114119 TGCTTGGCACATTGGAGCAA 61.114 50.000 6.82 0.00 44.17 3.91
529 530 1.529152 CTGCTTGGCACATTGGAGCA 61.529 55.000 8.81 8.81 44.81 4.26
530 531 1.214589 CTGCTTGGCACATTGGAGC 59.785 57.895 0.00 0.00 38.78 4.70
531 532 0.242825 CACTGCTTGGCACATTGGAG 59.757 55.000 0.00 0.00 39.30 3.86
532 533 0.178995 TCACTGCTTGGCACATTGGA 60.179 50.000 0.00 0.00 39.30 3.53
533 534 0.675083 TTCACTGCTTGGCACATTGG 59.325 50.000 0.00 0.00 39.30 3.16
534 535 2.129607 GTTTCACTGCTTGGCACATTG 58.870 47.619 0.00 0.00 39.30 2.82
535 536 2.034124 AGTTTCACTGCTTGGCACATT 58.966 42.857 0.00 0.00 39.30 2.71
536 537 1.338973 CAGTTTCACTGCTTGGCACAT 59.661 47.619 0.00 0.00 39.62 3.21
537 538 0.740149 CAGTTTCACTGCTTGGCACA 59.260 50.000 0.00 0.00 39.62 4.57
538 539 3.557207 CAGTTTCACTGCTTGGCAC 57.443 52.632 0.00 0.00 39.62 5.01
546 547 8.727889 AACCTCTTTTTGGTGCAGTTTCACTG 62.728 42.308 0.00 0.00 42.02 3.66
547 548 3.131046 CCTCTTTTTGGTGCAGTTTCACT 59.869 43.478 0.00 0.00 37.16 3.41
548 549 3.119137 ACCTCTTTTTGGTGCAGTTTCAC 60.119 43.478 0.00 0.00 36.30 3.18
549 550 3.096092 ACCTCTTTTTGGTGCAGTTTCA 58.904 40.909 0.00 0.00 36.30 2.69
550 551 3.801114 ACCTCTTTTTGGTGCAGTTTC 57.199 42.857 0.00 0.00 36.30 2.78
551 552 4.252878 CAAACCTCTTTTTGGTGCAGTTT 58.747 39.130 0.00 0.00 37.93 2.66
552 553 3.860641 CAAACCTCTTTTTGGTGCAGTT 58.139 40.909 0.00 0.00 37.93 3.16
553 554 3.525268 CAAACCTCTTTTTGGTGCAGT 57.475 42.857 0.00 0.00 37.93 4.40
558 559 7.471959 GAGAATCAATCCAAACCTCTTTTTGGT 60.472 37.037 13.04 0.68 44.75 3.67
559 560 6.870439 GAGAATCAATCCAAACCTCTTTTTGG 59.130 38.462 8.11 8.11 45.29 3.28
565 566 4.853007 CAGGAGAATCAATCCAAACCTCT 58.147 43.478 0.00 0.00 39.47 3.69
604 605 4.279169 TGAAGAAGGTTGGCTGAAATTCAG 59.721 41.667 18.02 18.02 46.90 3.02
620 621 7.282675 AGTGCTTTGATTGGAGATATGAAGAAG 59.717 37.037 0.00 0.00 0.00 2.85
621 622 7.114754 AGTGCTTTGATTGGAGATATGAAGAA 58.885 34.615 0.00 0.00 0.00 2.52
622 623 6.656902 AGTGCTTTGATTGGAGATATGAAGA 58.343 36.000 0.00 0.00 0.00 2.87
633 634 1.813513 AGACCGAGTGCTTTGATTGG 58.186 50.000 0.00 0.00 0.00 3.16
648 649 5.768164 TGAACCAACTTTCTGGATTTAGACC 59.232 40.000 0.00 0.00 38.96 3.85
829 848 0.037326 GCAGTGGACGGTCAAGATGA 60.037 55.000 10.76 0.00 0.00 2.92
931 952 2.745037 GAGCGGTGGTGGTTGGTA 59.255 61.111 0.00 0.00 0.00 3.25
1381 1443 4.521130 TTCAGTTCGAACTACAGAGCAT 57.479 40.909 29.28 2.65 37.08 3.79
1446 1523 1.464608 CACGGTATTTGCACAGACAGG 59.535 52.381 2.97 0.00 0.00 4.00
1447 1524 2.143122 ACACGGTATTTGCACAGACAG 58.857 47.619 0.00 0.00 0.00 3.51
1541 1620 3.593247 GCTCATAAGCGCACACAAG 57.407 52.632 11.47 2.08 39.10 3.16
1554 1633 6.841755 AGGTCTACTGGTAAAATCTAGCTCAT 59.158 38.462 0.00 0.00 0.00 2.90
1555 1634 6.195700 AGGTCTACTGGTAAAATCTAGCTCA 58.804 40.000 0.00 0.00 0.00 4.26
1559 1638 6.973474 CGTGAAGGTCTACTGGTAAAATCTAG 59.027 42.308 0.00 0.00 0.00 2.43
1579 1672 3.303461 CGCAACCAAGTACAATTCGTGAA 60.303 43.478 0.00 0.00 0.00 3.18
1581 1674 2.570169 CGCAACCAAGTACAATTCGTG 58.430 47.619 0.00 0.00 0.00 4.35
1605 1698 7.760794 TGTTCATGATTCAGCCATAAACAATTC 59.239 33.333 0.00 0.00 31.30 2.17
1619 1712 4.949238 ACCAATTCGGATGTTCATGATTCA 59.051 37.500 0.00 0.00 38.63 2.57
1634 1727 3.315191 ACAACAGAAGGAACACCAATTCG 59.685 43.478 0.00 0.00 0.00 3.34
1660 1798 4.558538 AATTCCATCTCAATTACAGCGC 57.441 40.909 0.00 0.00 0.00 5.92
1718 3046 2.821307 GCAACTCTGCTGAGCATAAC 57.179 50.000 19.49 2.78 45.74 1.89
1736 3098 4.925054 TCAGAATAATTTTTGCACAGCTGC 59.075 37.500 15.27 1.39 44.52 5.25
1747 3109 8.401490 AGCTGTGAGAGTTTCAGAATAATTTT 57.599 30.769 0.00 0.00 36.21 1.82
1754 3117 3.305403 CGGTAGCTGTGAGAGTTTCAGAA 60.305 47.826 0.00 0.00 36.21 3.02
1776 3139 8.177663 CAGTTAACAGTAACCACATCATGAATC 58.822 37.037 8.61 0.00 40.55 2.52
1845 3208 7.540299 AGGTTTCTGAGTAACTAGAAATCGAG 58.460 38.462 0.00 0.00 44.67 4.04
1873 3237 3.244976 GAATCACCGTTCAAGCAATTGG 58.755 45.455 7.72 0.00 0.00 3.16
1905 3269 5.684184 TCGCGTATGTGTATTACTAGCAAAG 59.316 40.000 5.77 0.00 0.00 2.77
2064 3428 1.171308 CTGGCCTTGAACACATCAGG 58.829 55.000 3.32 0.00 39.77 3.86
2066 3430 1.608055 CACTGGCCTTGAACACATCA 58.392 50.000 3.32 0.00 35.85 3.07
2094 3458 6.220201 TCGTTTGAATACAGTGAATGAGACA 58.780 36.000 0.00 0.00 0.00 3.41
2215 3581 7.441157 CGTTATTTGAGCTGGTTTGGATATCTA 59.559 37.037 2.05 0.00 0.00 1.98
2227 3593 7.657761 AGATTATTACTCCGTTATTTGAGCTGG 59.342 37.037 0.00 0.00 31.65 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.