Multiple sequence alignment - TraesCS1D01G289600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G289600 chr1D 100.000 4593 0 0 1 4593 387555699 387551107 0.000000e+00 8482.0
1 TraesCS1D01G289600 chr1D 94.778 517 17 9 1 513 130282439 130282949 0.000000e+00 797.0
2 TraesCS1D01G289600 chr1D 94.264 523 12 13 1 512 7514952 7514437 0.000000e+00 784.0
3 TraesCS1D01G289600 chr1A 95.439 4012 109 21 587 4540 487314581 487310586 0.000000e+00 6327.0
4 TraesCS1D01G289600 chr1B 96.331 3870 80 18 714 4539 520900870 520897019 0.000000e+00 6303.0
5 TraesCS1D01G289600 chr5D 93.957 513 21 8 1 510 89050061 89049556 0.000000e+00 767.0
6 TraesCS1D01G289600 chr5D 93.191 514 25 10 1 510 384614129 384613622 0.000000e+00 747.0
7 TraesCS1D01G289600 chr5D 92.442 516 27 12 1 510 486859957 486859448 0.000000e+00 726.0
8 TraesCS1D01G289600 chr5D 98.333 60 1 0 4533 4592 532749699 532749758 6.280000e-19 106.0
9 TraesCS1D01G289600 chr3D 94.083 507 21 8 1 502 1910390 1909888 0.000000e+00 761.0
10 TraesCS1D01G289600 chr3D 98.361 61 0 1 4533 4593 363266790 363266849 6.280000e-19 106.0
11 TraesCS1D01G289600 chr2D 93.567 513 24 8 1 510 157393458 157393964 0.000000e+00 756.0
12 TraesCS1D01G289600 chrUn 93.580 514 19 13 1 507 132054260 132054766 0.000000e+00 754.0
13 TraesCS1D01G289600 chr3B 94.824 483 19 4 1 477 785866948 785867430 0.000000e+00 749.0
14 TraesCS1D01G289600 chr5A 95.652 69 2 1 4524 4592 706438898 706438965 4.860000e-20 110.0
15 TraesCS1D01G289600 chr2A 96.923 65 2 0 4528 4592 516097050 516097114 4.860000e-20 110.0
16 TraesCS1D01G289600 chr2A 90.667 75 6 1 4518 4592 546942102 546942175 1.050000e-16 99.0
17 TraesCS1D01G289600 chr2A 90.667 75 6 1 4518 4592 547133203 547133276 1.050000e-16 99.0
18 TraesCS1D01G289600 chr6D 98.361 61 1 0 4532 4592 293082609 293082549 1.750000e-19 108.0
19 TraesCS1D01G289600 chr4B 96.774 62 2 0 4531 4592 23001851 23001912 2.260000e-18 104.0
20 TraesCS1D01G289600 chr2B 86.207 87 11 1 4506 4592 36611262 36611177 4.890000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G289600 chr1D 387551107 387555699 4592 True 8482 8482 100.000 1 4593 1 chr1D.!!$R2 4592
1 TraesCS1D01G289600 chr1D 130282439 130282949 510 False 797 797 94.778 1 513 1 chr1D.!!$F1 512
2 TraesCS1D01G289600 chr1D 7514437 7514952 515 True 784 784 94.264 1 512 1 chr1D.!!$R1 511
3 TraesCS1D01G289600 chr1A 487310586 487314581 3995 True 6327 6327 95.439 587 4540 1 chr1A.!!$R1 3953
4 TraesCS1D01G289600 chr1B 520897019 520900870 3851 True 6303 6303 96.331 714 4539 1 chr1B.!!$R1 3825
5 TraesCS1D01G289600 chr5D 89049556 89050061 505 True 767 767 93.957 1 510 1 chr5D.!!$R1 509
6 TraesCS1D01G289600 chr5D 384613622 384614129 507 True 747 747 93.191 1 510 1 chr5D.!!$R2 509
7 TraesCS1D01G289600 chr5D 486859448 486859957 509 True 726 726 92.442 1 510 1 chr5D.!!$R3 509
8 TraesCS1D01G289600 chr3D 1909888 1910390 502 True 761 761 94.083 1 502 1 chr3D.!!$R1 501
9 TraesCS1D01G289600 chr2D 157393458 157393964 506 False 756 756 93.567 1 510 1 chr2D.!!$F1 509
10 TraesCS1D01G289600 chrUn 132054260 132054766 506 False 754 754 93.580 1 507 1 chrUn.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 540 0.322187 GCGGACTAGGCCCTTTTGAA 60.322 55.000 9.73 0.0 0.00 2.69 F
1156 1250 0.385029 TGTGGCTGTGACAATGTTGC 59.615 50.000 0.00 0.0 0.00 4.17 F
1421 1515 0.617413 CTCCATGCAAGAGGGTGACT 59.383 55.000 8.84 0.0 0.00 3.41 F
2455 2549 1.065401 CCAGCGTCTGAAAACAGCAAA 59.935 47.619 8.20 0.0 32.44 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2369 1.006832 CGGCCAACTTACTGGAATCG 58.993 55.00 2.24 0.0 38.96 3.34 R
2456 2550 4.805219 CCCTTTTCGGACGAATCAAAAAT 58.195 39.13 8.06 0.0 33.79 1.82 R
3261 3355 2.291209 TTTTGCAGCTTGGATGAGGA 57.709 45.00 0.00 0.0 0.00 3.71 R
3655 3749 1.289160 TAGCTCCAAATCCACTGGCT 58.711 50.00 0.00 0.0 33.63 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
478 496 2.978010 CCACAGTGGGCCGACAAC 60.978 66.667 20.91 4.52 32.67 3.32
481 499 2.111043 CAGTGGGCCGACAACAGT 59.889 61.111 20.91 0.04 0.00 3.55
516 537 2.675371 GGCGGACTAGGCCCTTTT 59.325 61.111 9.73 0.00 44.97 2.27
518 539 1.298667 GCGGACTAGGCCCTTTTGA 59.701 57.895 9.73 0.00 0.00 2.69
519 540 0.322187 GCGGACTAGGCCCTTTTGAA 60.322 55.000 9.73 0.00 0.00 2.69
520 541 1.884928 GCGGACTAGGCCCTTTTGAAA 60.885 52.381 9.73 0.00 0.00 2.69
522 543 2.888414 CGGACTAGGCCCTTTTGAAAAA 59.112 45.455 9.73 0.00 0.00 1.94
629 650 2.882132 CGAATGGCGGAAAACCCC 59.118 61.111 0.00 0.00 36.03 4.95
630 651 1.974343 CGAATGGCGGAAAACCCCA 60.974 57.895 0.00 0.00 36.03 4.96
631 652 1.589630 GAATGGCGGAAAACCCCAC 59.410 57.895 0.00 0.00 0.00 4.61
632 653 1.884075 GAATGGCGGAAAACCCCACC 61.884 60.000 0.00 0.00 0.00 4.61
633 654 2.664835 AATGGCGGAAAACCCCACCA 62.665 55.000 0.00 0.00 40.69 4.17
634 655 2.283604 GGCGGAAAACCCCACCAT 60.284 61.111 0.00 0.00 0.00 3.55
941 1003 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
944 1006 2.018086 AGGAGGAGGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
945 1007 2.612251 GAGGAGGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
947 1009 3.369388 GGAGGAGGAGGAGGGGGT 61.369 72.222 0.00 0.00 0.00 4.95
1119 1197 0.396139 ACTCATTCCCCATTGCGCAT 60.396 50.000 12.75 0.00 0.00 4.73
1120 1214 1.133823 ACTCATTCCCCATTGCGCATA 60.134 47.619 12.75 2.21 0.00 3.14
1143 1237 3.614870 GCGGATTTCTGAAAATTGTGGCT 60.615 43.478 6.95 0.00 35.21 4.75
1156 1250 0.385029 TGTGGCTGTGACAATGTTGC 59.615 50.000 0.00 0.00 0.00 4.17
1222 1316 4.162690 AAGCTCATCGGGGCGGAC 62.163 66.667 0.00 0.00 0.00 4.79
1259 1353 2.107366 AGAAGGCAGAGCTCTACTTCC 58.893 52.381 34.29 24.91 38.68 3.46
1267 1361 2.119655 GCTCTACTTCCGGAGCCGA 61.120 63.158 11.05 0.00 46.32 5.54
1421 1515 0.617413 CTCCATGCAAGAGGGTGACT 59.383 55.000 8.84 0.00 0.00 3.41
1480 1574 4.016444 TCATCAACTACAAATTCCCTGCC 58.984 43.478 0.00 0.00 0.00 4.85
1558 1652 1.658686 CTCCGAAGAGGACCCAGACG 61.659 65.000 0.00 0.00 45.98 4.18
2003 2097 5.223449 TGAAACAGGACTTACCCAAGTAG 57.777 43.478 0.00 0.00 45.18 2.57
2188 2282 1.912110 CTTGCTACTACGTCGCAGAAC 59.088 52.381 0.00 0.00 39.69 3.01
2275 2369 1.172812 AGAAGGCGGCTTTGGTTGTC 61.173 55.000 26.25 11.10 0.00 3.18
2367 2461 1.937899 GTCCATACAACATGGTACCGC 59.062 52.381 7.57 0.00 40.06 5.68
2455 2549 1.065401 CCAGCGTCTGAAAACAGCAAA 59.935 47.619 8.20 0.00 32.44 3.68
2456 2550 2.479389 CCAGCGTCTGAAAACAGCAAAA 60.479 45.455 8.20 0.00 32.44 2.44
3261 3355 7.286316 GGATAAAGGTGGTGAAGATCATTTCAT 59.714 37.037 0.00 0.00 39.13 2.57
3662 3756 6.344500 AGAGATTTCATTGTAGTAGCCAGTG 58.656 40.000 0.00 0.00 0.00 3.66
3829 3923 5.011090 TGTTCATCATACTACTGTCCTGC 57.989 43.478 0.00 0.00 0.00 4.85
3919 4013 2.755103 GTTCATAAAGCTGTTGGGAGGG 59.245 50.000 0.00 0.00 0.00 4.30
3948 4042 2.746362 GCCACTCAGATTCCAGACAAAG 59.254 50.000 0.00 0.00 0.00 2.77
3956 4050 6.591935 TCAGATTCCAGACAAAGTACAAACT 58.408 36.000 0.00 0.00 37.65 2.66
4056 4151 2.760634 TACGCAATCTTGGAGAAGCA 57.239 45.000 0.00 0.00 31.42 3.91
4176 4271 6.127225 TGGTTCATGTCCAAATTCAAAGTTGA 60.127 34.615 4.61 0.00 36.17 3.18
4276 4371 9.508642 CTACTTTCTTCTGTTCCCTTTTCTATT 57.491 33.333 0.00 0.00 0.00 1.73
4396 4491 4.697352 CAGGAAAGATAAGTGACTGTTGGG 59.303 45.833 0.00 0.00 0.00 4.12
4483 4584 1.433471 TGCTCTAGACGGCACATCG 59.567 57.895 2.67 0.00 33.23 3.84
4512 4613 4.814771 AGTTAATAATGCTACCTTGTCCGC 59.185 41.667 0.00 0.00 0.00 5.54
4542 4643 8.782339 TGCTGTATTTACTTTTTAGTACTCCC 57.218 34.615 0.00 0.00 0.00 4.30
4543 4644 8.599792 TGCTGTATTTACTTTTTAGTACTCCCT 58.400 33.333 0.00 0.00 0.00 4.20
4544 4645 9.096160 GCTGTATTTACTTTTTAGTACTCCCTC 57.904 37.037 0.00 0.00 0.00 4.30
4545 4646 9.597170 CTGTATTTACTTTTTAGTACTCCCTCC 57.403 37.037 0.00 0.00 0.00 4.30
4546 4647 8.253113 TGTATTTACTTTTTAGTACTCCCTCCG 58.747 37.037 0.00 0.00 0.00 4.63
4547 4648 6.670695 TTTACTTTTTAGTACTCCCTCCGT 57.329 37.500 0.00 0.00 0.00 4.69
4548 4649 4.797800 ACTTTTTAGTACTCCCTCCGTC 57.202 45.455 0.00 0.00 0.00 4.79
4549 4650 3.513119 ACTTTTTAGTACTCCCTCCGTCC 59.487 47.826 0.00 0.00 0.00 4.79
4550 4651 1.755179 TTTAGTACTCCCTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
4551 4652 0.107017 TTAGTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
4552 4653 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
4553 4654 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4554 4655 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
4555 4656 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4556 4657 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4557 4658 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4558 4659 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4559 4660 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4560 4661 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4561 4662 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4562 4663 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4563 4664 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4564 4665 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4565 4666 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
4566 4667 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
4567 4668 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
4568 4669 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
4569 4670 5.445939 CGTCCGGAAATACTTGTCATTGAAG 60.446 44.000 5.23 0.00 0.00 3.02
4570 4671 5.411669 GTCCGGAAATACTTGTCATTGAAGT 59.588 40.000 5.23 0.00 37.43 3.01
4571 4672 5.411361 TCCGGAAATACTTGTCATTGAAGTG 59.589 40.000 0.00 0.00 35.30 3.16
4572 4673 5.391950 CCGGAAATACTTGTCATTGAAGTGG 60.392 44.000 0.00 0.00 35.30 4.00
4573 4674 5.411361 CGGAAATACTTGTCATTGAAGTGGA 59.589 40.000 1.97 0.00 35.30 4.02
4574 4675 6.094048 CGGAAATACTTGTCATTGAAGTGGAT 59.906 38.462 1.97 0.00 35.30 3.41
4575 4676 7.253422 GGAAATACTTGTCATTGAAGTGGATG 58.747 38.462 1.97 0.00 35.30 3.51
4576 4677 7.094205 GGAAATACTTGTCATTGAAGTGGATGT 60.094 37.037 1.97 0.00 35.30 3.06
4577 4678 8.862325 AAATACTTGTCATTGAAGTGGATGTA 57.138 30.769 1.97 0.00 35.30 2.29
4578 4679 9.466497 AAATACTTGTCATTGAAGTGGATGTAT 57.534 29.630 1.97 0.00 35.30 2.29
4579 4680 6.992063 ACTTGTCATTGAAGTGGATGTATC 57.008 37.500 0.00 0.00 32.30 2.24
4580 4681 6.715280 ACTTGTCATTGAAGTGGATGTATCT 58.285 36.000 0.00 0.00 32.30 1.98
4581 4682 7.851228 ACTTGTCATTGAAGTGGATGTATCTA 58.149 34.615 0.00 0.00 32.30 1.98
4582 4683 7.984050 ACTTGTCATTGAAGTGGATGTATCTAG 59.016 37.037 0.00 0.00 32.30 2.43
4583 4684 7.660030 TGTCATTGAAGTGGATGTATCTAGA 57.340 36.000 0.00 0.00 0.00 2.43
4584 4685 8.255111 TGTCATTGAAGTGGATGTATCTAGAT 57.745 34.615 10.73 10.73 0.00 1.98
4585 4686 8.146412 TGTCATTGAAGTGGATGTATCTAGATG 58.854 37.037 15.79 0.00 0.00 2.90
4586 4687 8.147058 GTCATTGAAGTGGATGTATCTAGATGT 58.853 37.037 15.79 1.25 0.00 3.06
4587 4688 9.367160 TCATTGAAGTGGATGTATCTAGATGTA 57.633 33.333 15.79 4.44 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
416 431 3.726607 TGTGGGCTAATTGTTTTTGCAG 58.273 40.909 0.00 0.00 0.00 4.41
481 499 2.046023 CACAGCAGGCCGATTGGA 60.046 61.111 1.98 0.00 37.49 3.53
721 742 2.483188 CGAAATAGGACGAGGGAAAGGG 60.483 54.545 0.00 0.00 0.00 3.95
725 766 0.462789 GGCGAAATAGGACGAGGGAA 59.537 55.000 0.00 0.00 0.00 3.97
726 767 0.685131 TGGCGAAATAGGACGAGGGA 60.685 55.000 0.00 0.00 0.00 4.20
941 1003 2.722201 CGCTCGCTCTTAACCCCCT 61.722 63.158 0.00 0.00 0.00 4.79
944 1006 2.202892 CCCGCTCGCTCTTAACCC 60.203 66.667 0.00 0.00 0.00 4.11
945 1007 2.890961 GCCCGCTCGCTCTTAACC 60.891 66.667 0.00 0.00 0.00 2.85
947 1009 4.508128 CCGCCCGCTCGCTCTTAA 62.508 66.667 0.00 0.00 0.00 1.85
1101 1163 1.538512 CTATGCGCAATGGGGAATGAG 59.461 52.381 17.11 0.00 0.00 2.90
1119 1197 4.380444 GCCACAATTTTCAGAAATCCGCTA 60.380 41.667 0.00 0.00 34.44 4.26
1120 1214 3.614870 GCCACAATTTTCAGAAATCCGCT 60.615 43.478 0.00 0.00 34.44 5.52
1136 1230 1.202394 GCAACATTGTCACAGCCACAA 60.202 47.619 0.00 0.00 38.12 3.33
1143 1237 2.710220 GCAGATGCAACATTGTCACA 57.290 45.000 0.00 0.00 41.59 3.58
1156 1250 2.022346 GCACGCACGATGCAGATG 59.978 61.111 9.95 6.28 45.36 2.90
1267 1361 1.078848 GTTGCTGATGAGCTCCGGT 60.079 57.895 12.15 0.00 46.39 5.28
1421 1515 1.612442 CCTTGGGGACTCCTTCGGA 60.612 63.158 0.00 0.00 36.20 4.55
1480 1574 1.259840 CCATGGGCAAACCTTCCAGG 61.260 60.000 2.85 0.00 42.49 4.45
1543 1637 1.079750 GTGCGTCTGGGTCCTCTTC 60.080 63.158 0.00 0.00 0.00 2.87
1696 1790 1.546029 GCCACCTTCCTTTCAATGTCC 59.454 52.381 0.00 0.00 0.00 4.02
1979 2073 4.652822 ACTTGGGTAAGTCCTGTTTCATC 58.347 43.478 0.00 0.00 43.53 2.92
2188 2282 5.288232 GGATTTCATTCTATCGATCTGAGCG 59.712 44.000 9.33 9.33 0.00 5.03
2275 2369 1.006832 CGGCCAACTTACTGGAATCG 58.993 55.000 2.24 0.00 38.96 3.34
2455 2549 5.227152 CCCTTTTCGGACGAATCAAAAATT 58.773 37.500 8.06 0.00 33.79 1.82
2456 2550 4.805219 CCCTTTTCGGACGAATCAAAAAT 58.195 39.130 8.06 0.00 33.79 1.82
3261 3355 2.291209 TTTTGCAGCTTGGATGAGGA 57.709 45.000 0.00 0.00 0.00 3.71
3655 3749 1.289160 TAGCTCCAAATCCACTGGCT 58.711 50.000 0.00 0.00 33.63 4.75
3662 3756 4.323553 AGACACGTATAGCTCCAAATCC 57.676 45.455 0.00 0.00 0.00 3.01
3829 3923 3.303791 GCAAACACAGTTTCTTCCGGTAG 60.304 47.826 0.00 0.00 0.00 3.18
3919 4013 4.517285 TGGAATCTGAGTGGCAATAGTTC 58.483 43.478 0.00 0.00 0.00 3.01
4056 4151 1.299976 GCCAAACGAGGGGAGACAT 59.700 57.895 0.00 0.00 0.00 3.06
4176 4271 7.552458 TGTTAACAGATCATCGTATGCAAAT 57.448 32.000 3.59 0.00 0.00 2.32
4247 4342 8.661345 AGAAAAGGGAACAGAAGAAAGTAGTAT 58.339 33.333 0.00 0.00 0.00 2.12
4276 4371 1.846007 AAACAGCAACACCACCTTCA 58.154 45.000 0.00 0.00 0.00 3.02
4396 4491 6.755141 CCATCCTGTCAAATGATTGAATGAAC 59.245 38.462 0.00 0.00 46.66 3.18
4483 4584 7.707104 ACAAGGTAGCATTATTAACTTCATGC 58.293 34.615 0.00 0.00 42.05 4.06
4540 4641 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4541 4642 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4542 4643 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4543 4644 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4544 4645 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4545 4646 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
4546 4647 5.411669 ACTTCAATGACAAGTATTTCCGGAC 59.588 40.000 1.83 0.00 32.08 4.79
4547 4648 5.411361 CACTTCAATGACAAGTATTTCCGGA 59.589 40.000 0.00 0.00 32.61 5.14
4548 4649 5.391950 CCACTTCAATGACAAGTATTTCCGG 60.392 44.000 0.00 0.00 32.61 5.14
4549 4650 5.411361 TCCACTTCAATGACAAGTATTTCCG 59.589 40.000 0.00 0.00 32.61 4.30
4550 4651 6.817765 TCCACTTCAATGACAAGTATTTCC 57.182 37.500 0.00 0.00 32.61 3.13
4551 4652 7.820648 ACATCCACTTCAATGACAAGTATTTC 58.179 34.615 0.00 0.00 32.61 2.17
4552 4653 7.765695 ACATCCACTTCAATGACAAGTATTT 57.234 32.000 0.00 0.00 32.61 1.40
4553 4654 9.113838 GATACATCCACTTCAATGACAAGTATT 57.886 33.333 0.00 0.00 32.61 1.89
4554 4655 8.489489 AGATACATCCACTTCAATGACAAGTAT 58.511 33.333 0.00 0.00 32.61 2.12
4555 4656 7.851228 AGATACATCCACTTCAATGACAAGTA 58.149 34.615 0.00 0.00 32.61 2.24
4556 4657 6.715280 AGATACATCCACTTCAATGACAAGT 58.285 36.000 0.00 0.00 34.24 3.16
4557 4658 8.200120 TCTAGATACATCCACTTCAATGACAAG 58.800 37.037 0.00 0.00 0.00 3.16
4558 4659 8.078060 TCTAGATACATCCACTTCAATGACAA 57.922 34.615 0.00 0.00 0.00 3.18
4559 4660 7.660030 TCTAGATACATCCACTTCAATGACA 57.340 36.000 0.00 0.00 0.00 3.58
4560 4661 8.147058 ACATCTAGATACATCCACTTCAATGAC 58.853 37.037 4.54 0.00 0.00 3.06
4561 4662 8.255111 ACATCTAGATACATCCACTTCAATGA 57.745 34.615 4.54 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.