Multiple sequence alignment - TraesCS1D01G289400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G289400 chr1D 100.000 4927 0 0 1 4927 387435242 387430316 0.000000e+00 9099.0
1 TraesCS1D01G289400 chr1D 89.869 306 28 3 2899 3201 254293649 254293344 1.660000e-104 390.0
2 TraesCS1D01G289400 chr1A 90.240 2336 154 37 1 2313 487104428 487102144 0.000000e+00 2983.0
3 TraesCS1D01G289400 chr1A 90.457 1268 57 17 3217 4439 487101382 487100134 0.000000e+00 1613.0
4 TraesCS1D01G289400 chr1A 95.152 495 21 3 4433 4927 487100083 487099592 0.000000e+00 778.0
5 TraesCS1D01G289400 chr1B 91.633 1984 107 26 369 2313 520816268 520814305 0.000000e+00 2689.0
6 TraesCS1D01G289400 chr1B 90.249 923 41 23 3217 4099 520813573 520812660 0.000000e+00 1160.0
7 TraesCS1D01G289400 chr1B 85.607 535 44 9 4165 4698 520811158 520810656 9.390000e-147 531.0
8 TraesCS1D01G289400 chr1B 89.803 304 28 3 2899 3199 252324905 252324602 2.150000e-103 387.0
9 TraesCS1D01G289400 chr1B 88.412 233 27 0 4695 4927 489555459 489555227 1.040000e-71 281.0
10 TraesCS1D01G289400 chr6A 91.722 302 22 3 2903 3201 155252262 155251961 2.740000e-112 416.0
11 TraesCS1D01G289400 chr3D 90.323 310 24 5 2899 3202 607358053 607358362 7.680000e-108 401.0
12 TraesCS1D01G289400 chr3D 89.508 305 28 3 2899 3199 112101497 112101801 2.780000e-102 383.0
13 TraesCS1D01G289400 chr7D 89.869 306 26 4 2899 3201 511327776 511327473 5.980000e-104 388.0
14 TraesCS1D01G289400 chr5A 89.508 305 28 3 2899 3199 483549069 483549373 2.780000e-102 383.0
15 TraesCS1D01G289400 chr4D 89.320 309 27 4 2899 3201 308374061 308373753 2.780000e-102 383.0
16 TraesCS1D01G289400 chr4D 88.462 234 27 0 4694 4927 286103051 286102818 2.900000e-72 283.0
17 TraesCS1D01G289400 chr4D 87.607 234 29 0 4694 4927 286059093 286058860 6.280000e-69 272.0
18 TraesCS1D01G289400 chr4D 86.667 75 10 0 1678 1752 498686114 498686040 3.160000e-12 84.2
19 TraesCS1D01G289400 chr7A 89.474 304 28 3 2899 3198 628228101 628228404 1.000000e-101 381.0
20 TraesCS1D01G289400 chr7B 88.841 233 25 1 4696 4927 413265331 413265099 8.070000e-73 285.0
21 TraesCS1D01G289400 chr7B 87.983 233 27 1 4695 4927 382614266 382614497 1.750000e-69 274.0
22 TraesCS1D01G289400 chr7B 86.975 238 30 1 4690 4927 46549691 46549455 2.920000e-67 267.0
23 TraesCS1D01G289400 chr4A 87.500 232 29 0 4696 4927 522458463 522458232 8.130000e-68 268.0
24 TraesCS1D01G289400 chr2D 87.500 232 29 0 4696 4927 207186076 207186307 8.130000e-68 268.0
25 TraesCS1D01G289400 chr4B 86.667 75 10 0 1678 1752 640824013 640823939 3.160000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G289400 chr1D 387430316 387435242 4926 True 9099.000000 9099 100.000000 1 4927 1 chr1D.!!$R2 4926
1 TraesCS1D01G289400 chr1A 487099592 487104428 4836 True 1791.333333 2983 91.949667 1 4927 3 chr1A.!!$R1 4926
2 TraesCS1D01G289400 chr1B 520810656 520816268 5612 True 1460.000000 2689 89.163000 369 4698 3 chr1B.!!$R3 4329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
348 350 0.108186 TACAGCCAGAATGCCACTCG 60.108 55.0 0.00 0.0 31.97 4.18 F
1415 1452 0.322636 ACGACGATGAGGAGGACAGT 60.323 55.0 0.00 0.0 0.00 3.55 F
2249 2299 0.608640 TTTCCTCCTTCCTCTGCGTC 59.391 55.0 0.00 0.0 0.00 5.19 F
2622 2748 0.326264 GTCAACACTGAGGGCCATCT 59.674 55.0 19.75 0.0 30.14 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2333 2383 0.036164 TGGGAACACATCTCCAACGG 59.964 55.000 0.00 0.00 34.34 4.44 R
2457 2561 0.034337 TGGTCGGTGCCTCTGTAAAC 59.966 55.000 0.00 0.00 0.00 2.01 R
3215 3476 2.577300 GCATCGTGCCATATGTTACG 57.423 50.000 17.83 17.83 37.42 3.18 R
4550 6374 1.728971 GCCATCAACTCTCGAACACAG 59.271 52.381 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.913946 AAAGGAAGGATAGGGATAACCAG 57.086 43.478 0.00 0.00 43.89 4.00
30 31 6.265304 AGGAAGGATAGGGATAACCAGATAC 58.735 44.000 0.00 0.00 43.89 2.24
56 57 6.531594 GTGGAAATATTCTGCTAAAAGTTGCC 59.468 38.462 0.00 0.00 0.00 4.52
97 98 0.257039 GACTTGCATCCTGACCCCAT 59.743 55.000 0.00 0.00 0.00 4.00
118 119 0.181350 GTGGGGGAGCTATGACCAAG 59.819 60.000 0.00 0.00 32.19 3.61
120 121 1.709994 GGGGGAGCTATGACCAAGGG 61.710 65.000 0.00 0.00 0.00 3.95
131 132 1.248486 GACCAAGGGCCAGTTCTTTC 58.752 55.000 6.18 0.00 0.00 2.62
132 133 0.537371 ACCAAGGGCCAGTTCTTTCG 60.537 55.000 6.18 0.00 0.00 3.46
137 138 0.678048 GGGCCAGTTCTTTCGATGCT 60.678 55.000 4.39 0.00 0.00 3.79
141 142 4.127171 GGCCAGTTCTTTCGATGCTATTA 58.873 43.478 0.00 0.00 0.00 0.98
146 147 7.467267 GCCAGTTCTTTCGATGCTATTATGAAA 60.467 37.037 0.00 0.00 0.00 2.69
152 153 9.935682 TCTTTCGATGCTATTATGAAAAATCAC 57.064 29.630 0.00 0.00 0.00 3.06
158 159 5.007234 TGCTATTATGAAAAATCACGGTCCG 59.993 40.000 10.48 10.48 0.00 4.79
159 160 4.893424 ATTATGAAAAATCACGGTCCGG 57.107 40.909 17.28 0.00 0.00 5.14
160 161 1.459450 ATGAAAAATCACGGTCCGGG 58.541 50.000 17.28 12.77 0.00 5.73
169 170 0.393808 CACGGTCCGGGGAATCAAAT 60.394 55.000 17.28 0.00 0.00 2.32
171 172 0.738389 CGGTCCGGGGAATCAAATTG 59.262 55.000 2.34 0.00 0.00 2.32
172 173 0.459899 GGTCCGGGGAATCAAATTGC 59.540 55.000 0.00 0.00 0.00 3.56
177 179 3.071602 TCCGGGGAATCAAATTGCAAAAA 59.928 39.130 1.71 0.00 31.57 1.94
202 204 0.984230 ATCTGTGTCCCATGAACCGT 59.016 50.000 0.00 0.00 0.00 4.83
206 208 1.548719 TGTGTCCCATGAACCGTCTAG 59.451 52.381 0.00 0.00 0.00 2.43
214 216 4.383118 CCCATGAACCGTCTAGAATCAACT 60.383 45.833 0.00 0.00 0.00 3.16
216 218 4.451629 TGAACCGTCTAGAATCAACTCC 57.548 45.455 0.00 0.00 0.00 3.85
224 226 2.672961 AGAATCAACTCCGAATCGCA 57.327 45.000 0.00 0.00 0.00 5.10
240 242 3.525268 TCGCAGTGCAATCTAGAATCA 57.475 42.857 16.83 0.00 0.00 2.57
259 261 1.135972 CACGGAAACTTGGCGATTCTG 60.136 52.381 0.00 0.00 36.97 3.02
261 263 1.804151 CGGAAACTTGGCGATTCTGAA 59.196 47.619 0.00 0.00 33.84 3.02
262 264 2.159653 CGGAAACTTGGCGATTCTGAAG 60.160 50.000 0.00 0.00 33.84 3.02
284 286 4.476479 AGATTCTAGCCAGTCCCTCAAAAT 59.524 41.667 0.00 0.00 0.00 1.82
289 291 6.180472 TCTAGCCAGTCCCTCAAAATAAAAG 58.820 40.000 0.00 0.00 0.00 2.27
291 293 3.832490 GCCAGTCCCTCAAAATAAAAGGT 59.168 43.478 0.00 0.00 0.00 3.50
315 317 6.512514 TTTGTTCCAAACTAGTACCCCTAA 57.487 37.500 0.00 0.00 0.00 2.69
326 328 8.396619 AACTAGTACCCCTAATGGACAATTTA 57.603 34.615 0.00 0.00 35.39 1.40
332 334 9.411189 GTACCCCTAATGGACAATTTATTTACA 57.589 33.333 0.00 0.00 35.39 2.41
348 350 0.108186 TACAGCCAGAATGCCACTCG 60.108 55.000 0.00 0.00 31.97 4.18
366 368 4.785453 GGCCTTGCCCACCGAGAG 62.785 72.222 0.00 0.00 44.06 3.20
526 528 1.556911 GTCTTGCTCCCTGAAGATCCA 59.443 52.381 0.00 0.00 31.05 3.41
539 541 3.776969 TGAAGATCCATGGCTAGTTCTGT 59.223 43.478 6.96 0.00 0.00 3.41
657 659 4.278975 AGAGCACAAAAAGTAGAGGAGG 57.721 45.455 0.00 0.00 0.00 4.30
787 789 2.929398 CCACCCTTTTCAATTAATGCGC 59.071 45.455 0.00 0.00 0.00 6.09
827 834 3.319122 AGAGCACAAACTCCCACAAATTC 59.681 43.478 0.00 0.00 37.39 2.17
833 840 2.009681 ACTCCCACAAATTCCAACCC 57.990 50.000 0.00 0.00 0.00 4.11
834 841 1.219213 ACTCCCACAAATTCCAACCCA 59.781 47.619 0.00 0.00 0.00 4.51
866 873 5.373812 TCTTCTTCCTCCTCAACTTGTTT 57.626 39.130 0.00 0.00 0.00 2.83
892 899 2.501610 GCTCTTCTTCCGGCGGAT 59.498 61.111 31.59 0.00 0.00 4.18
896 903 2.125147 TTCTTCCGGCGGATGCAG 60.125 61.111 31.59 23.91 45.35 4.41
1016 1030 3.485216 GCGATCATGGAAAAACAGGTACG 60.485 47.826 0.00 0.00 0.00 3.67
1101 1115 4.552166 ATCAGTTTCGGAAGTGTTTGTG 57.448 40.909 11.08 0.00 37.45 3.33
1113 1143 2.158871 AGTGTTTGTGTAAGCTTCGGGA 60.159 45.455 0.00 0.00 0.00 5.14
1114 1144 2.223377 GTGTTTGTGTAAGCTTCGGGAG 59.777 50.000 0.00 0.00 0.00 4.30
1127 1164 2.421751 TCGGGAGTTTTGTTGGTTGA 57.578 45.000 0.00 0.00 0.00 3.18
1128 1165 2.724454 TCGGGAGTTTTGTTGGTTGAA 58.276 42.857 0.00 0.00 0.00 2.69
1259 1296 1.200760 ACTACATGCTGGGCCAGACA 61.201 55.000 37.07 30.45 32.44 3.41
1334 1371 0.956633 TCTCCGACGTGCTACAGTTT 59.043 50.000 0.00 0.00 0.00 2.66
1415 1452 0.322636 ACGACGATGAGGAGGACAGT 60.323 55.000 0.00 0.00 0.00 3.55
1790 1827 1.043116 TGCCAGGATCCTACGTCCAG 61.043 60.000 15.67 0.00 38.25 3.86
1805 1842 6.662234 CCTACGTCCAGAGGGTATTTATATGA 59.338 42.308 0.00 0.00 34.93 2.15
1806 1843 6.342338 ACGTCCAGAGGGTATTTATATGAC 57.658 41.667 0.00 0.00 34.93 3.06
1807 1844 5.836898 ACGTCCAGAGGGTATTTATATGACA 59.163 40.000 0.00 0.00 34.93 3.58
1810 1854 7.093727 CGTCCAGAGGGTATTTATATGACATCT 60.094 40.741 0.00 0.00 34.93 2.90
1819 1863 8.679100 GGTATTTATATGACATCTCTCGCTACT 58.321 37.037 0.00 0.00 0.00 2.57
1827 1871 7.043961 TGACATCTCTCGCTACTATTTCAAT 57.956 36.000 0.00 0.00 0.00 2.57
1829 1873 8.797438 TGACATCTCTCGCTACTATTTCAATAT 58.203 33.333 0.00 0.00 0.00 1.28
1872 1916 4.447389 GGGACATTTCAACGAACAATTTGG 59.553 41.667 0.78 0.00 0.00 3.28
1877 1921 7.811653 ACATTTCAACGAACAATTTGGTTTTT 58.188 26.923 0.78 0.00 31.82 1.94
1908 1952 8.702163 AAAAGAACAGTACTCCACAAAAATTG 57.298 30.769 0.00 0.00 0.00 2.32
2023 2067 5.473504 TGACTCATGAGGGCTTAAACTTTTC 59.526 40.000 26.08 10.35 0.00 2.29
2053 2097 5.638596 AAAAATTCCATACCTCGGTGAAC 57.361 39.130 0.00 0.00 0.00 3.18
2061 2105 5.533903 TCCATACCTCGGTGAACTATCTAAC 59.466 44.000 0.00 0.00 0.00 2.34
2066 2110 6.708285 ACCTCGGTGAACTATCTAACAAAAT 58.292 36.000 0.00 0.00 0.00 1.82
2111 2155 8.579006 TGATCTATCAAATTGCACTGACTTTTT 58.421 29.630 0.00 0.00 33.08 1.94
2112 2156 8.752766 ATCTATCAAATTGCACTGACTTTTTG 57.247 30.769 0.00 0.00 0.00 2.44
2118 2162 7.601886 TCAAATTGCACTGACTTTTTGAGAAAA 59.398 29.630 0.00 0.00 31.53 2.29
2122 2166 6.629128 TGCACTGACTTTTTGAGAAAATTGA 58.371 32.000 0.00 0.00 34.45 2.57
2124 2168 6.019559 GCACTGACTTTTTGAGAAAATTGACC 60.020 38.462 0.00 0.00 34.45 4.02
2163 2207 8.033038 GGTTTGGAATTGGTTTAAATCTAGACC 58.967 37.037 0.00 0.00 33.68 3.85
2172 2216 7.822658 TGGTTTAAATCTAGACCGGAATTTTG 58.177 34.615 9.46 0.00 35.46 2.44
2247 2297 2.185004 TTTTTCCTCCTTCCTCTGCG 57.815 50.000 0.00 0.00 0.00 5.18
2249 2299 0.608640 TTTCCTCCTTCCTCTGCGTC 59.391 55.000 0.00 0.00 0.00 5.19
2259 2309 2.720758 CTCTGCGTCGAAGCCAACG 61.721 63.158 20.62 4.18 41.68 4.10
2265 2315 1.517694 GTCGAAGCCAACGCCGATA 60.518 57.895 0.00 0.00 34.57 2.92
2269 2319 0.651031 GAAGCCAACGCCGATAACTC 59.349 55.000 0.00 0.00 34.57 3.01
2270 2320 0.743345 AAGCCAACGCCGATAACTCC 60.743 55.000 0.00 0.00 34.57 3.85
2271 2321 1.448893 GCCAACGCCGATAACTCCA 60.449 57.895 0.00 0.00 0.00 3.86
2292 2342 4.758165 CCAACGATGTTAGGGTTAACTTGT 59.242 41.667 5.42 0.00 39.90 3.16
2298 2348 6.238814 CGATGTTAGGGTTAACTTGTGGTTTT 60.239 38.462 5.42 0.00 39.90 2.43
2299 2349 7.041235 CGATGTTAGGGTTAACTTGTGGTTTTA 60.041 37.037 5.42 0.00 39.90 1.52
2300 2350 7.571080 TGTTAGGGTTAACTTGTGGTTTTAG 57.429 36.000 5.42 0.00 39.90 1.85
2313 2363 4.278170 TGTGGTTTTAGATGCTCAAGGTTG 59.722 41.667 0.00 0.00 0.00 3.77
2314 2364 4.518970 GTGGTTTTAGATGCTCAAGGTTGA 59.481 41.667 0.00 0.00 35.57 3.18
2333 2383 4.142609 TGAGGACAATATCAACTGCTCC 57.857 45.455 0.00 0.00 0.00 4.70
2334 2384 3.118261 TGAGGACAATATCAACTGCTCCC 60.118 47.826 0.00 0.00 0.00 4.30
2335 2385 2.158900 AGGACAATATCAACTGCTCCCG 60.159 50.000 0.00 0.00 0.00 5.14
2336 2386 2.420129 GGACAATATCAACTGCTCCCGT 60.420 50.000 0.00 0.00 0.00 5.28
2338 2441 3.009723 ACAATATCAACTGCTCCCGTTG 58.990 45.455 0.00 0.00 42.27 4.10
2382 2486 1.617804 CCATGTGGGCTGTTGGATCTT 60.618 52.381 0.00 0.00 0.00 2.40
2393 2497 5.303078 GGCTGTTGGATCTTAGATCTAGTGA 59.697 44.000 20.01 6.30 0.00 3.41
2420 2524 0.742281 CGGAGTCCTTGGACATGCAG 60.742 60.000 20.36 7.57 0.00 4.41
2422 2526 1.211457 GGAGTCCTTGGACATGCAGAT 59.789 52.381 20.36 0.00 0.00 2.90
2424 2528 3.462021 GAGTCCTTGGACATGCAGATAC 58.538 50.000 20.36 0.00 0.00 2.24
2469 2573 4.727507 TTTTTGCAAGTTTACAGAGGCA 57.272 36.364 0.00 0.00 0.00 4.75
2482 2586 4.082523 AGGCACCGACCATGACCG 62.083 66.667 0.00 0.00 0.00 4.79
2491 2595 1.405526 CGACCATGACCGTTGGATCTT 60.406 52.381 0.00 0.00 37.69 2.40
2492 2596 2.159156 CGACCATGACCGTTGGATCTTA 60.159 50.000 0.00 0.00 37.69 2.10
2535 2640 0.469070 GAGCATGGGAGCATGTCTCT 59.531 55.000 14.20 0.00 41.60 3.10
2539 2644 2.295885 CATGGGAGCATGTCTCTTTCC 58.704 52.381 14.20 9.29 41.60 3.13
2540 2645 1.661463 TGGGAGCATGTCTCTTTCCT 58.339 50.000 14.20 0.00 41.60 3.36
2541 2646 1.988107 TGGGAGCATGTCTCTTTCCTT 59.012 47.619 14.20 0.00 41.60 3.36
2542 2647 2.290514 TGGGAGCATGTCTCTTTCCTTG 60.291 50.000 14.20 0.00 41.60 3.61
2544 2649 2.290577 GGAGCATGTCTCTTTCCTTGGT 60.291 50.000 14.20 0.00 41.60 3.67
2545 2650 3.006247 GAGCATGTCTCTTTCCTTGGTC 58.994 50.000 9.16 0.00 38.78 4.02
2546 2651 2.373169 AGCATGTCTCTTTCCTTGGTCA 59.627 45.455 0.00 0.00 0.00 4.02
2565 2690 7.297936 TGGTCAAGAGTACTATTTTGTCTCA 57.702 36.000 0.00 2.72 0.00 3.27
2566 2691 7.907389 TGGTCAAGAGTACTATTTTGTCTCAT 58.093 34.615 0.00 0.00 0.00 2.90
2567 2692 7.819415 TGGTCAAGAGTACTATTTTGTCTCATG 59.181 37.037 0.00 0.00 0.00 3.07
2611 2737 6.464222 TCATTTCTAATTCTCGGTCAACACT 58.536 36.000 0.00 0.00 0.00 3.55
2622 2748 0.326264 GTCAACACTGAGGGCCATCT 59.674 55.000 19.75 0.00 30.14 2.90
2644 2770 8.478877 CATCTATCTTGATGATGAGATCCATGA 58.521 37.037 0.00 0.00 44.71 3.07
2647 2773 9.503399 CTATCTTGATGATGAGATCCATGAAAA 57.497 33.333 0.00 0.00 35.17 2.29
2648 2774 8.762481 ATCTTGATGATGAGATCCATGAAAAA 57.238 30.769 0.00 0.00 35.17 1.94
2693 2823 6.790285 AAAAGACTGCCATTTTTGCATTAG 57.210 33.333 0.00 0.00 38.22 1.73
2694 2824 5.473066 AAGACTGCCATTTTTGCATTAGT 57.527 34.783 0.00 0.00 38.22 2.24
2695 2825 5.473066 AGACTGCCATTTTTGCATTAGTT 57.527 34.783 0.00 0.00 38.22 2.24
2696 2826 5.857268 AGACTGCCATTTTTGCATTAGTTT 58.143 33.333 0.00 0.00 38.22 2.66
2697 2827 6.290605 AGACTGCCATTTTTGCATTAGTTTT 58.709 32.000 0.00 0.00 38.22 2.43
2702 2832 9.202273 CTGCCATTTTTGCATTAGTTTTTACTA 57.798 29.630 0.00 0.00 38.22 1.82
2711 2841 7.790000 TGCATTAGTTTTTACTAGACGAACAC 58.210 34.615 0.00 0.00 0.00 3.32
2724 2854 5.689383 AGACGAACACATTTTTGTAGCAT 57.311 34.783 0.00 0.00 0.00 3.79
2850 3070 7.754027 GTGTAACTTCTAGAGATGCTAACGAAA 59.246 37.037 0.00 0.00 0.00 3.46
2863 3083 5.853936 TGCTAACGAAATGCCTGATATACT 58.146 37.500 0.00 0.00 0.00 2.12
2865 3085 6.866770 TGCTAACGAAATGCCTGATATACTAC 59.133 38.462 0.00 0.00 0.00 2.73
2873 3102 6.842437 ATGCCTGATATACTACTACACCTG 57.158 41.667 0.00 0.00 0.00 4.00
2875 3104 5.768662 TGCCTGATATACTACTACACCTGAC 59.231 44.000 0.00 0.00 0.00 3.51
2877 3106 6.544650 CCTGATATACTACTACACCTGACCT 58.455 44.000 0.00 0.00 0.00 3.85
2879 3108 8.162085 CCTGATATACTACTACACCTGACCTAA 58.838 40.741 0.00 0.00 0.00 2.69
2880 3109 9.742144 CTGATATACTACTACACCTGACCTAAT 57.258 37.037 0.00 0.00 0.00 1.73
2901 3162 8.432805 CCTAATCATATAATACATGACCCCCTC 58.567 40.741 0.00 0.00 35.33 4.30
2902 3163 6.831664 ATCATATAATACATGACCCCCTCC 57.168 41.667 0.00 0.00 35.33 4.30
2903 3164 5.927465 TCATATAATACATGACCCCCTCCT 58.073 41.667 0.00 0.00 0.00 3.69
2904 3165 6.339220 TCATATAATACATGACCCCCTCCTT 58.661 40.000 0.00 0.00 0.00 3.36
2905 3166 6.797540 TCATATAATACATGACCCCCTCCTTT 59.202 38.462 0.00 0.00 0.00 3.11
2906 3167 3.669939 AATACATGACCCCCTCCTTTG 57.330 47.619 0.00 0.00 0.00 2.77
2907 3168 1.295020 TACATGACCCCCTCCTTTGG 58.705 55.000 0.00 0.00 0.00 3.28
2909 3170 0.409484 CATGACCCCCTCCTTTGGTT 59.591 55.000 0.00 0.00 30.97 3.67
2910 3171 1.167033 ATGACCCCCTCCTTTGGTTT 58.833 50.000 0.00 0.00 30.97 3.27
2911 3172 1.835895 TGACCCCCTCCTTTGGTTTA 58.164 50.000 0.00 0.00 30.97 2.01
2912 3173 1.708551 TGACCCCCTCCTTTGGTTTAG 59.291 52.381 0.00 0.00 30.97 1.85
2913 3174 1.990327 GACCCCCTCCTTTGGTTTAGA 59.010 52.381 0.00 0.00 30.97 2.10
2914 3175 1.993301 ACCCCCTCCTTTGGTTTAGAG 59.007 52.381 0.00 0.00 0.00 2.43
2915 3176 2.275466 CCCCCTCCTTTGGTTTAGAGA 58.725 52.381 0.00 0.00 0.00 3.10
2916 3177 2.647802 CCCCCTCCTTTGGTTTAGAGAA 59.352 50.000 0.00 0.00 0.00 2.87
2917 3178 3.075432 CCCCCTCCTTTGGTTTAGAGAAA 59.925 47.826 0.00 0.00 0.00 2.52
2918 3179 4.264397 CCCCCTCCTTTGGTTTAGAGAAAT 60.264 45.833 0.00 0.00 0.00 2.17
2919 3180 4.950475 CCCCTCCTTTGGTTTAGAGAAATC 59.050 45.833 0.00 0.00 0.00 2.17
2920 3181 5.281245 CCCCTCCTTTGGTTTAGAGAAATCT 60.281 44.000 0.00 0.00 0.00 2.40
2921 3182 6.249192 CCCTCCTTTGGTTTAGAGAAATCTT 58.751 40.000 0.00 0.00 0.00 2.40
2922 3183 6.151817 CCCTCCTTTGGTTTAGAGAAATCTTG 59.848 42.308 0.00 0.00 0.00 3.02
2923 3184 6.717084 CCTCCTTTGGTTTAGAGAAATCTTGT 59.283 38.462 0.00 0.00 0.00 3.16
2924 3185 7.883311 CCTCCTTTGGTTTAGAGAAATCTTGTA 59.117 37.037 0.00 0.00 0.00 2.41
2925 3186 8.848474 TCCTTTGGTTTAGAGAAATCTTGTAG 57.152 34.615 0.00 0.00 0.00 2.74
2926 3187 7.883311 TCCTTTGGTTTAGAGAAATCTTGTAGG 59.117 37.037 0.00 0.00 0.00 3.18
2927 3188 7.883311 CCTTTGGTTTAGAGAAATCTTGTAGGA 59.117 37.037 0.00 0.00 0.00 2.94
2928 3189 9.284968 CTTTGGTTTAGAGAAATCTTGTAGGAA 57.715 33.333 0.00 0.00 0.00 3.36
2929 3190 9.807921 TTTGGTTTAGAGAAATCTTGTAGGAAT 57.192 29.630 0.00 0.00 0.00 3.01
2930 3191 9.807921 TTGGTTTAGAGAAATCTTGTAGGAATT 57.192 29.630 0.00 0.00 0.00 2.17
2931 3192 9.807921 TGGTTTAGAGAAATCTTGTAGGAATTT 57.192 29.630 0.00 0.00 0.00 1.82
2937 3198 9.898152 AGAGAAATCTTGTAGGAATTTCTTAGG 57.102 33.333 10.04 0.00 40.41 2.69
2938 3199 9.892130 GAGAAATCTTGTAGGAATTTCTTAGGA 57.108 33.333 10.04 0.00 40.41 2.94
2943 3204 9.676129 ATCTTGTAGGAATTTCTTAGGATAGGA 57.324 33.333 0.00 0.00 0.00 2.94
2944 3205 9.676129 TCTTGTAGGAATTTCTTAGGATAGGAT 57.324 33.333 0.00 0.00 0.00 3.24
2947 3208 9.676129 TGTAGGAATTTCTTAGGATAGGATTCT 57.324 33.333 0.00 0.00 0.00 2.40
2976 3237 7.093354 GGAAAAATTCCTTTAGAGCTCTTTGG 58.907 38.462 23.84 20.12 46.57 3.28
2977 3238 7.255977 GGAAAAATTCCTTTAGAGCTCTTTGGT 60.256 37.037 23.84 0.00 46.57 3.67
2978 3239 7.603180 AAAATTCCTTTAGAGCTCTTTGGTT 57.397 32.000 23.84 9.84 0.00 3.67
2979 3240 7.603180 AAATTCCTTTAGAGCTCTTTGGTTT 57.397 32.000 23.84 14.53 0.00 3.27
2980 3241 6.581171 ATTCCTTTAGAGCTCTTTGGTTTG 57.419 37.500 23.84 4.84 0.00 2.93
2981 3242 5.048846 TCCTTTAGAGCTCTTTGGTTTGT 57.951 39.130 23.84 0.00 0.00 2.83
2982 3243 6.182507 TCCTTTAGAGCTCTTTGGTTTGTA 57.817 37.500 23.84 0.00 0.00 2.41
2983 3244 6.231211 TCCTTTAGAGCTCTTTGGTTTGTAG 58.769 40.000 23.84 6.20 0.00 2.74
2984 3245 5.412904 CCTTTAGAGCTCTTTGGTTTGTAGG 59.587 44.000 23.84 11.01 0.00 3.18
2985 3246 5.818678 TTAGAGCTCTTTGGTTTGTAGGA 57.181 39.130 23.84 0.00 0.00 2.94
2986 3247 4.706842 AGAGCTCTTTGGTTTGTAGGAA 57.293 40.909 11.45 0.00 0.00 3.36
2987 3248 5.248380 AGAGCTCTTTGGTTTGTAGGAAT 57.752 39.130 11.45 0.00 0.00 3.01
2988 3249 5.006386 AGAGCTCTTTGGTTTGTAGGAATG 58.994 41.667 11.45 0.00 0.00 2.67
2989 3250 4.082125 AGCTCTTTGGTTTGTAGGAATGG 58.918 43.478 0.00 0.00 0.00 3.16
2990 3251 4.079253 GCTCTTTGGTTTGTAGGAATGGA 58.921 43.478 0.00 0.00 0.00 3.41
2991 3252 4.522789 GCTCTTTGGTTTGTAGGAATGGAA 59.477 41.667 0.00 0.00 0.00 3.53
2992 3253 5.185828 GCTCTTTGGTTTGTAGGAATGGAAT 59.814 40.000 0.00 0.00 0.00 3.01
2993 3254 6.295292 GCTCTTTGGTTTGTAGGAATGGAATT 60.295 38.462 0.00 0.00 40.93 2.17
3032 3293 7.922382 GGAATTCTTCCTATCCTCCATATTCA 58.078 38.462 5.23 0.00 46.57 2.57
3033 3294 8.555729 GGAATTCTTCCTATCCTCCATATTCAT 58.444 37.037 5.23 0.00 46.57 2.57
3037 3298 9.843704 TTCTTCCTATCCTCCATATTCATAAGA 57.156 33.333 0.00 0.00 0.00 2.10
3038 3299 9.843704 TCTTCCTATCCTCCATATTCATAAGAA 57.156 33.333 0.00 0.00 38.31 2.52
3098 3359 7.814264 ATAATGTGAATCAAAGGACATCTCC 57.186 36.000 0.00 0.00 36.71 3.71
3112 3373 7.368198 AGGACATCTCCTTTTCTATTCCTAC 57.632 40.000 0.00 0.00 45.77 3.18
3113 3374 7.136203 AGGACATCTCCTTTTCTATTCCTACT 58.864 38.462 0.00 0.00 45.77 2.57
3114 3375 7.289084 AGGACATCTCCTTTTCTATTCCTACTC 59.711 40.741 0.00 0.00 45.77 2.59
3115 3376 7.070074 GGACATCTCCTTTTCTATTCCTACTCA 59.930 40.741 0.00 0.00 33.07 3.41
3116 3377 8.560124 ACATCTCCTTTTCTATTCCTACTCAT 57.440 34.615 0.00 0.00 0.00 2.90
3117 3378 9.661954 ACATCTCCTTTTCTATTCCTACTCATA 57.338 33.333 0.00 0.00 0.00 2.15
3195 3456 9.695155 TTTTCTTACCCTATGAATTAAAGGAGG 57.305 33.333 2.50 0.00 31.64 4.30
3196 3457 6.838382 TCTTACCCTATGAATTAAAGGAGGC 58.162 40.000 2.50 0.00 31.64 4.70
3197 3458 4.455070 ACCCTATGAATTAAAGGAGGCC 57.545 45.455 0.00 0.00 31.64 5.19
3198 3459 4.055094 ACCCTATGAATTAAAGGAGGCCT 58.945 43.478 3.86 3.86 33.87 5.19
3199 3460 5.232347 ACCCTATGAATTAAAGGAGGCCTA 58.768 41.667 4.42 0.00 31.13 3.93
3200 3461 5.674958 ACCCTATGAATTAAAGGAGGCCTAA 59.325 40.000 4.42 0.00 31.13 2.69
3201 3462 6.004574 CCCTATGAATTAAAGGAGGCCTAAC 58.995 44.000 4.42 0.84 31.13 2.34
3202 3463 6.183361 CCCTATGAATTAAAGGAGGCCTAACT 60.183 42.308 4.42 3.93 31.13 2.24
3203 3464 7.290813 CCTATGAATTAAAGGAGGCCTAACTT 58.709 38.462 4.42 11.22 31.13 2.66
3204 3465 7.780271 CCTATGAATTAAAGGAGGCCTAACTTT 59.220 37.037 28.10 28.10 38.02 2.66
3205 3466 6.834168 TGAATTAAAGGAGGCCTAACTTTG 57.166 37.500 30.84 0.00 36.07 2.77
3206 3467 5.185056 TGAATTAAAGGAGGCCTAACTTTGC 59.815 40.000 30.84 21.38 36.07 3.68
3207 3468 2.980246 AAAGGAGGCCTAACTTTGCT 57.020 45.000 25.95 9.47 33.53 3.91
3208 3469 5.508280 TTAAAGGAGGCCTAACTTTGCTA 57.492 39.130 30.84 19.33 36.07 3.49
3209 3470 4.382386 AAAGGAGGCCTAACTTTGCTAA 57.618 40.909 25.95 0.00 33.53 3.09
3210 3471 3.351794 AGGAGGCCTAACTTTGCTAAC 57.648 47.619 4.42 0.00 28.47 2.34
3211 3472 2.642807 AGGAGGCCTAACTTTGCTAACA 59.357 45.455 4.42 0.00 28.47 2.41
3212 3473 2.747989 GGAGGCCTAACTTTGCTAACAC 59.252 50.000 4.42 0.00 0.00 3.32
3213 3474 3.408634 GAGGCCTAACTTTGCTAACACA 58.591 45.455 4.42 0.00 0.00 3.72
3214 3475 4.010349 GAGGCCTAACTTTGCTAACACAT 58.990 43.478 4.42 0.00 0.00 3.21
3215 3476 4.010349 AGGCCTAACTTTGCTAACACATC 58.990 43.478 1.29 0.00 0.00 3.06
3523 3784 1.945387 CCAAGGTGATGATCGACCTG 58.055 55.000 14.42 9.97 42.03 4.00
3583 3844 3.077556 AAGTCGAGCCTGGCGGAT 61.078 61.111 13.96 0.00 0.00 4.18
3755 4016 3.662247 ACTCCTTCAACGTCAAGGTAG 57.338 47.619 20.39 17.97 41.28 3.18
3773 4034 3.119495 GGTAGGCACGAGCATTCATTTTT 60.119 43.478 7.26 0.00 44.61 1.94
3872 4158 0.105039 GATTCACGGCCGAGGAGATT 59.895 55.000 35.90 18.52 0.00 2.40
3929 4215 2.919229 CGTCAACTACACGTTATGACCC 59.081 50.000 9.16 0.00 33.63 4.46
3931 4217 4.501071 GTCAACTACACGTTATGACCCAT 58.499 43.478 0.00 0.00 33.63 4.00
3962 4275 5.907945 TCGATCTCGACTCGATTAATTCAAC 59.092 40.000 10.43 0.00 44.22 3.18
4040 4354 8.428536 GTGCTTAATTGTATCTGTATGACGATC 58.571 37.037 0.00 0.00 0.00 3.69
4051 4365 5.880887 TCTGTATGACGATCTACACTGTTCT 59.119 40.000 0.00 0.00 0.00 3.01
4102 4416 5.336150 AGATGTACAATGAGTGACTCCAG 57.664 43.478 10.52 2.42 0.00 3.86
4196 5946 5.794687 TTGCGACCAAGAACTAATATGTG 57.205 39.130 0.00 0.00 0.00 3.21
4238 5993 7.068692 ACTATTATGTTTCTTAACGTGGTGC 57.931 36.000 0.00 0.00 37.06 5.01
4257 6012 1.077787 CCCTGCTACGCCAATTGGA 60.078 57.895 29.02 6.41 37.39 3.53
4354 6121 8.643324 AGGGAATGATAACTACTATTGACTGAC 58.357 37.037 0.00 0.00 0.00 3.51
4470 6294 6.467677 AGAGAATGAAACAAAAGAGATCCGA 58.532 36.000 0.00 0.00 0.00 4.55
4491 6315 8.690203 TCCGATGATATTTTGATGGTTGTTAT 57.310 30.769 0.00 0.00 0.00 1.89
4501 6325 7.630470 TTTGATGGTTGTTATTAAAGCAACG 57.370 32.000 11.40 0.00 42.22 4.10
4537 6361 1.293179 GCAGGTGGGTGATTTTGCC 59.707 57.895 0.00 0.00 0.00 4.52
4640 6464 2.481289 ACCTGCTTTCCTAGTTGAGC 57.519 50.000 2.51 2.51 35.74 4.26
4683 6507 1.530323 ATCTTTACCCGTGTTGGTGC 58.470 50.000 0.00 0.00 39.53 5.01
4765 6589 8.947055 AAATTCCACAATATAAGGTGCATTTC 57.053 30.769 0.00 0.00 33.72 2.17
4817 6641 9.280456 TGACCCTCTAGGAAAAGAAAAGTATAT 57.720 33.333 0.00 0.00 39.89 0.86
4839 6663 1.097547 CCCCCGATTGCATGTGTCTC 61.098 60.000 0.00 0.00 0.00 3.36
4840 6664 0.392863 CCCCGATTGCATGTGTCTCA 60.393 55.000 0.00 0.00 0.00 3.27
4841 6665 1.452110 CCCGATTGCATGTGTCTCAA 58.548 50.000 0.00 0.00 0.00 3.02
4842 6666 1.131126 CCCGATTGCATGTGTCTCAAC 59.869 52.381 0.00 0.00 0.00 3.18
4843 6667 2.079158 CCGATTGCATGTGTCTCAACT 58.921 47.619 0.00 0.00 0.00 3.16
4845 6669 3.425359 CCGATTGCATGTGTCTCAACTTC 60.425 47.826 0.00 0.00 0.00 3.01
4846 6670 3.434641 CGATTGCATGTGTCTCAACTTCT 59.565 43.478 0.00 0.00 0.00 2.85
4849 6673 4.871933 TGCATGTGTCTCAACTTCTAGA 57.128 40.909 0.00 0.00 0.00 2.43
4850 6674 4.814147 TGCATGTGTCTCAACTTCTAGAG 58.186 43.478 0.00 0.00 0.00 2.43
4851 6675 4.524328 TGCATGTGTCTCAACTTCTAGAGA 59.476 41.667 0.00 0.00 38.49 3.10
4904 6728 6.017192 TGTGTGTATCTCTTCCTTTCCTAGT 58.983 40.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.159879 CCACGTATCTGGTTATCCCTATCC 59.840 50.000 0.00 0.00 0.00 2.59
14 15 4.458256 TCCACGTATCTGGTTATCCCTA 57.542 45.455 0.00 0.00 32.50 3.53
19 20 7.387948 GCAGAATATTTCCACGTATCTGGTTAT 59.612 37.037 0.00 0.00 32.50 1.89
26 27 8.827677 ACTTTTAGCAGAATATTTCCACGTATC 58.172 33.333 0.00 0.00 0.00 2.24
30 31 6.251376 GCAACTTTTAGCAGAATATTTCCACG 59.749 38.462 0.00 0.00 0.00 4.94
56 57 2.427453 ACTTACATCCTGACTGTAGCGG 59.573 50.000 0.00 0.00 31.17 5.52
83 84 0.109342 CCACTATGGGGTCAGGATGC 59.891 60.000 0.00 0.00 31.52 3.91
97 98 0.639943 TGGTCATAGCTCCCCCACTA 59.360 55.000 0.00 0.00 0.00 2.74
104 105 1.149401 GGCCCTTGGTCATAGCTCC 59.851 63.158 0.00 0.00 0.00 4.70
131 132 6.658831 ACCGTGATTTTTCATAATAGCATCG 58.341 36.000 0.00 0.00 0.00 3.84
132 133 7.078228 GGACCGTGATTTTTCATAATAGCATC 58.922 38.462 0.00 0.00 0.00 3.91
137 138 4.817464 CCCGGACCGTGATTTTTCATAATA 59.183 41.667 13.94 0.00 0.00 0.98
141 142 1.459450 CCCGGACCGTGATTTTTCAT 58.541 50.000 13.94 0.00 0.00 2.57
146 147 0.107361 GATTCCCCGGACCGTGATTT 60.107 55.000 13.94 0.25 0.00 2.17
152 153 0.738389 CAATTTGATTCCCCGGACCG 59.262 55.000 6.99 6.99 0.00 4.79
195 197 3.119602 CGGAGTTGATTCTAGACGGTTCA 60.120 47.826 0.00 0.00 0.00 3.18
202 204 3.380320 TGCGATTCGGAGTTGATTCTAGA 59.620 43.478 8.34 0.00 0.00 2.43
214 216 0.108186 AGATTGCACTGCGATTCGGA 60.108 50.000 8.34 3.84 32.11 4.55
216 218 2.463876 TCTAGATTGCACTGCGATTCG 58.536 47.619 5.18 0.62 32.11 3.34
224 226 4.471904 TTCCGTGATTCTAGATTGCACT 57.528 40.909 14.37 0.00 0.00 4.40
240 242 1.156736 CAGAATCGCCAAGTTTCCGT 58.843 50.000 0.00 0.00 30.73 4.69
259 261 3.034635 TGAGGGACTGGCTAGAATCTTC 58.965 50.000 3.17 0.00 41.55 2.87
261 263 2.856760 TGAGGGACTGGCTAGAATCT 57.143 50.000 3.17 0.00 41.55 2.40
262 264 3.914426 TTTGAGGGACTGGCTAGAATC 57.086 47.619 3.17 0.00 41.55 2.52
289 291 8.125580 TTAGGGGTACTAGTTTGGAACAAAACC 61.126 40.741 0.00 0.00 36.77 3.27
291 293 6.909076 TTAGGGGTACTAGTTTGGAACAAAA 58.091 36.000 0.00 0.00 36.77 2.44
315 317 7.716799 TTCTGGCTGTAAATAAATTGTCCAT 57.283 32.000 0.00 0.00 0.00 3.41
326 328 3.019564 GAGTGGCATTCTGGCTGTAAAT 58.980 45.455 2.33 0.00 44.10 1.40
332 334 2.270205 CCGAGTGGCATTCTGGCT 59.730 61.111 8.43 0.00 44.10 4.75
358 360 1.736032 CGTTTTAGGCCTCTCTCGGTG 60.736 57.143 9.68 0.00 0.00 4.94
366 368 2.074576 GAACCAGTCGTTTTAGGCCTC 58.925 52.381 9.68 0.00 33.74 4.70
387 389 1.670406 CACAGACTGCTGCAGGGAC 60.670 63.158 31.00 21.14 46.26 4.46
485 487 4.858935 ACACAAAAACATGATTGTCCGAG 58.141 39.130 0.00 0.00 37.66 4.63
486 488 4.578516 AGACACAAAAACATGATTGTCCGA 59.421 37.500 0.00 0.00 37.66 4.55
487 489 4.858935 AGACACAAAAACATGATTGTCCG 58.141 39.130 0.00 0.40 37.66 4.79
488 490 5.050837 GCAAGACACAAAAACATGATTGTCC 60.051 40.000 0.00 2.87 37.66 4.02
526 528 2.025981 TGGCAATGACAGAACTAGCCAT 60.026 45.455 0.00 0.00 44.89 4.40
539 541 1.047002 CTTTTGGGTGGTGGCAATGA 58.953 50.000 0.00 0.00 0.00 2.57
657 659 1.538950 CTGCCTTTGCTTTCTCCACTC 59.461 52.381 0.00 0.00 38.71 3.51
816 823 1.062886 TGTGGGTTGGAATTTGTGGGA 60.063 47.619 0.00 0.00 0.00 4.37
827 834 3.133003 AGAAGATATCGAGTGTGGGTTGG 59.867 47.826 0.00 0.00 0.00 3.77
833 840 4.582656 AGGAGGAAGAAGATATCGAGTGTG 59.417 45.833 0.00 0.00 0.00 3.82
834 841 4.798882 AGGAGGAAGAAGATATCGAGTGT 58.201 43.478 0.00 0.00 0.00 3.55
866 873 0.322975 GGAAGAAGAGCCTGCAGTGA 59.677 55.000 13.81 0.00 0.00 3.41
942 949 2.121538 CATGCATGCAGCTGGCTCT 61.122 57.895 26.69 3.09 45.94 4.09
1016 1030 2.739214 GATCGATGCGATGCGTGCAC 62.739 60.000 6.82 6.82 47.00 4.57
1050 1064 1.077716 GGCCAGGCGGAAATACACT 60.078 57.895 5.00 0.00 0.00 3.55
1051 1065 0.751643 ATGGCCAGGCGGAAATACAC 60.752 55.000 13.05 0.00 0.00 2.90
1052 1066 0.751277 CATGGCCAGGCGGAAATACA 60.751 55.000 13.05 0.00 0.00 2.29
1053 1067 2.032981 CATGGCCAGGCGGAAATAC 58.967 57.895 13.05 0.00 0.00 1.89
1054 1068 1.827789 GCATGGCCAGGCGGAAATA 60.828 57.895 28.54 0.00 0.00 1.40
1055 1069 3.149648 GCATGGCCAGGCGGAAAT 61.150 61.111 28.54 0.00 0.00 2.17
1079 1093 4.398044 ACACAAACACTTCCGAAACTGATT 59.602 37.500 0.00 0.00 0.00 2.57
1101 1115 3.304458 CCAACAAAACTCCCGAAGCTTAC 60.304 47.826 0.00 0.00 0.00 2.34
1113 1143 4.429108 CGACCATTTCAACCAACAAAACT 58.571 39.130 0.00 0.00 0.00 2.66
1114 1144 3.000825 GCGACCATTTCAACCAACAAAAC 59.999 43.478 0.00 0.00 0.00 2.43
1127 1164 0.392193 CCTGCTCAGAGCGACCATTT 60.392 55.000 17.81 0.00 46.26 2.32
1128 1165 1.220206 CCTGCTCAGAGCGACCATT 59.780 57.895 17.81 0.00 46.26 3.16
1403 1440 4.480115 TGAAGAAGTAACTGTCCTCCTCA 58.520 43.478 0.00 0.00 0.00 3.86
1415 1452 3.326880 GGGACTGGAACCTGAAGAAGTAA 59.673 47.826 4.82 0.00 0.00 2.24
1519 1556 3.551407 GGCCTCCTGATCCGTCCC 61.551 72.222 0.00 0.00 0.00 4.46
1600 1637 4.101448 CCTTCTGGCCGACCCTGG 62.101 72.222 0.00 0.00 33.61 4.45
1667 1704 1.674057 CACCTCCTCGCTGGTCTTT 59.326 57.895 0.00 0.00 33.75 2.52
1790 1827 6.975772 GCGAGAGATGTCATATAAATACCCTC 59.024 42.308 0.00 0.00 0.00 4.30
1836 1880 0.463295 ATGTCCCTGCAAGCGATGAG 60.463 55.000 0.00 0.00 0.00 2.90
1850 1894 5.047188 ACCAAATTGTTCGTTGAAATGTCC 58.953 37.500 0.00 0.00 0.00 4.02
1917 1961 8.983702 TGGAACTACCATAAGTTTAAGTTTGT 57.016 30.769 0.00 0.00 44.64 2.83
2006 2050 5.124645 TGTTACGAAAAGTTTAAGCCCTCA 58.875 37.500 0.00 0.00 0.00 3.86
2023 2067 7.011669 ACCGAGGTATGGAATTTTTATGTTACG 59.988 37.037 0.00 0.00 0.00 3.18
2041 2085 6.839124 TTTGTTAGATAGTTCACCGAGGTA 57.161 37.500 0.00 0.00 0.00 3.08
2085 2129 7.692460 AAAGTCAGTGCAATTTGATAGATCA 57.308 32.000 0.00 0.00 34.44 2.92
2146 2190 8.301002 CAAAATTCCGGTCTAGATTTAAACCAA 58.699 33.333 0.00 0.00 0.00 3.67
2148 2192 8.047413 TCAAAATTCCGGTCTAGATTTAAACC 57.953 34.615 0.00 0.00 0.00 3.27
2152 2196 6.954232 ACCTCAAAATTCCGGTCTAGATTTA 58.046 36.000 0.00 0.00 0.00 1.40
2159 2203 4.360951 TGTAACCTCAAAATTCCGGTCT 57.639 40.909 0.00 0.00 0.00 3.85
2163 2207 8.587952 AATCTTTTTGTAACCTCAAAATTCCG 57.412 30.769 5.63 0.00 43.60 4.30
2185 2229 9.352784 CGGATTGACATATCTTAAGAGAGAATC 57.647 37.037 11.53 11.63 34.85 2.52
2187 2231 8.465273 TCGGATTGACATATCTTAAGAGAGAA 57.535 34.615 11.53 0.00 34.85 2.87
2192 2236 7.714813 TGCAAATCGGATTGACATATCTTAAGA 59.285 33.333 7.82 7.82 31.84 2.10
2247 2297 1.079875 TTATCGGCGTTGGCTTCGAC 61.080 55.000 6.85 2.29 36.05 4.20
2249 2299 1.082117 AGTTATCGGCGTTGGCTTCG 61.082 55.000 6.85 0.00 39.81 3.79
2259 2309 1.935933 ACATCGTTGGAGTTATCGGC 58.064 50.000 0.00 0.00 0.00 5.54
2260 2310 4.049186 CCTAACATCGTTGGAGTTATCGG 58.951 47.826 0.00 0.00 0.00 4.18
2265 2315 3.782656 AACCCTAACATCGTTGGAGTT 57.217 42.857 0.00 0.00 0.00 3.01
2269 2319 4.758165 ACAAGTTAACCCTAACATCGTTGG 59.242 41.667 0.88 0.00 40.03 3.77
2270 2320 5.334569 CCACAAGTTAACCCTAACATCGTTG 60.335 44.000 0.88 0.00 40.03 4.10
2271 2321 4.758165 CCACAAGTTAACCCTAACATCGTT 59.242 41.667 0.88 0.00 40.03 3.85
2292 2342 4.724399 TCAACCTTGAGCATCTAAAACCA 58.276 39.130 0.00 0.00 34.92 3.67
2313 2363 3.471680 GGGAGCAGTTGATATTGTCCTC 58.528 50.000 0.00 0.00 0.00 3.71
2314 2364 2.158900 CGGGAGCAGTTGATATTGTCCT 60.159 50.000 0.00 0.00 0.00 3.85
2315 2365 2.213499 CGGGAGCAGTTGATATTGTCC 58.787 52.381 0.00 0.00 0.00 4.02
2316 2366 2.906354 ACGGGAGCAGTTGATATTGTC 58.094 47.619 0.00 0.00 0.00 3.18
2317 2367 3.350219 AACGGGAGCAGTTGATATTGT 57.650 42.857 0.00 0.00 0.00 2.71
2331 2381 0.323629 GGAACACATCTCCAACGGGA 59.676 55.000 0.00 0.00 42.29 5.14
2332 2382 0.676782 GGGAACACATCTCCAACGGG 60.677 60.000 0.00 0.00 34.34 5.28
2333 2383 0.036164 TGGGAACACATCTCCAACGG 59.964 55.000 0.00 0.00 34.34 4.44
2334 2384 3.623848 TGGGAACACATCTCCAACG 57.376 52.632 0.00 0.00 34.34 4.10
2393 2497 2.959707 GTCCAAGGACTCCGACTATGAT 59.040 50.000 11.94 0.00 41.57 2.45
2402 2506 0.615331 TCTGCATGTCCAAGGACTCC 59.385 55.000 19.20 8.62 44.80 3.85
2420 2524 3.129638 GCCTCGAGAGTCCCATATGTATC 59.870 52.174 15.71 0.00 0.00 2.24
2422 2526 2.515854 GCCTCGAGAGTCCCATATGTA 58.484 52.381 15.71 0.00 0.00 2.29
2424 2528 0.605589 GGCCTCGAGAGTCCCATATG 59.394 60.000 15.71 0.00 0.00 1.78
2457 2561 0.034337 TGGTCGGTGCCTCTGTAAAC 59.966 55.000 0.00 0.00 0.00 2.01
2467 2571 2.358247 AACGGTCATGGTCGGTGC 60.358 61.111 11.90 0.00 0.00 5.01
2469 2573 1.550130 ATCCAACGGTCATGGTCGGT 61.550 55.000 11.90 3.89 39.09 4.69
2535 2640 7.996644 ACAAAATAGTACTCTTGACCAAGGAAA 59.003 33.333 15.49 0.00 38.88 3.13
2539 2644 7.872993 TGAGACAAAATAGTACTCTTGACCAAG 59.127 37.037 15.49 3.47 39.71 3.61
2540 2645 7.732025 TGAGACAAAATAGTACTCTTGACCAA 58.268 34.615 15.49 0.00 0.00 3.67
2541 2646 7.297936 TGAGACAAAATAGTACTCTTGACCA 57.702 36.000 15.49 9.02 0.00 4.02
2542 2647 8.035394 TCATGAGACAAAATAGTACTCTTGACC 58.965 37.037 15.49 8.94 37.09 4.02
2544 2649 9.645059 CTTCATGAGACAAAATAGTACTCTTGA 57.355 33.333 15.49 0.00 38.78 3.02
2545 2650 9.429359 ACTTCATGAGACAAAATAGTACTCTTG 57.571 33.333 0.00 4.72 35.54 3.02
2588 2713 6.368791 TCAGTGTTGACCGAGAATTAGAAATG 59.631 38.462 0.00 0.00 0.00 2.32
2594 2719 3.056107 CCCTCAGTGTTGACCGAGAATTA 60.056 47.826 0.00 0.00 0.00 1.40
2595 2720 2.289694 CCCTCAGTGTTGACCGAGAATT 60.290 50.000 0.00 0.00 0.00 2.17
2597 2722 0.679505 CCCTCAGTGTTGACCGAGAA 59.320 55.000 0.00 0.00 0.00 2.87
2599 2724 1.374758 GCCCTCAGTGTTGACCGAG 60.375 63.158 0.00 0.00 0.00 4.63
2601 2726 2.358737 GGCCCTCAGTGTTGACCG 60.359 66.667 0.00 0.00 0.00 4.79
2602 2727 0.678048 GATGGCCCTCAGTGTTGACC 60.678 60.000 0.00 0.00 0.00 4.02
2611 2737 3.590714 TCATCAAGATAGATGGCCCTCA 58.409 45.455 10.92 0.00 44.30 3.86
2616 2742 6.050432 GGATCTCATCATCAAGATAGATGGC 58.950 44.000 15.74 0.00 44.30 4.40
2622 2748 9.856162 TTTTTCATGGATCTCATCATCAAGATA 57.144 29.630 0.00 0.00 34.43 1.98
2670 2800 6.290605 ACTAATGCAAAAATGGCAGTCTTTT 58.709 32.000 0.00 0.00 45.68 2.27
2678 2808 9.418045 TCTAGTAAAAACTAATGCAAAAATGGC 57.582 29.630 0.00 0.00 0.00 4.40
2686 2816 7.438757 TGTGTTCGTCTAGTAAAAACTAATGCA 59.561 33.333 0.00 0.00 0.00 3.96
2687 2817 7.790000 TGTGTTCGTCTAGTAAAAACTAATGC 58.210 34.615 0.00 0.00 0.00 3.56
2692 2822 9.498307 CAAAAATGTGTTCGTCTAGTAAAAACT 57.502 29.630 0.00 0.00 0.00 2.66
2693 2823 9.281075 ACAAAAATGTGTTCGTCTAGTAAAAAC 57.719 29.630 0.00 0.00 0.00 2.43
2696 2826 8.277713 GCTACAAAAATGTGTTCGTCTAGTAAA 58.722 33.333 0.00 0.00 32.75 2.01
2697 2827 7.438757 TGCTACAAAAATGTGTTCGTCTAGTAA 59.561 33.333 0.00 0.00 32.75 2.24
2702 2832 5.238432 TCATGCTACAAAAATGTGTTCGTCT 59.762 36.000 0.00 0.00 32.75 4.18
2705 2835 6.085573 TCATCATGCTACAAAAATGTGTTCG 58.914 36.000 0.00 0.00 32.75 3.95
2738 2868 9.866655 ATTTTAAAGGGAATGTATCTATGCTCA 57.133 29.630 0.00 0.00 0.00 4.26
2749 2879 9.190317 CTAGCTAGGAAATTTTAAAGGGAATGT 57.810 33.333 13.32 0.00 0.00 2.71
2830 3050 5.176590 GGCATTTCGTTAGCATCTCTAGAAG 59.823 44.000 0.00 0.00 0.00 2.85
2850 3070 6.434652 GTCAGGTGTAGTAGTATATCAGGCAT 59.565 42.308 0.00 0.00 0.00 4.40
2873 3102 8.211629 GGGGGTCATGTATTATATGATTAGGTC 58.788 40.741 6.42 0.00 36.96 3.85
2875 3104 8.337118 AGGGGGTCATGTATTATATGATTAGG 57.663 38.462 6.42 0.00 36.96 2.69
2877 3106 8.135586 AGGAGGGGGTCATGTATTATATGATTA 58.864 37.037 6.42 0.00 36.96 1.75
2879 3108 6.524996 AGGAGGGGGTCATGTATTATATGAT 58.475 40.000 6.42 0.00 36.96 2.45
2880 3109 5.927465 AGGAGGGGGTCATGTATTATATGA 58.073 41.667 0.00 0.00 32.44 2.15
2885 3146 3.461831 CCAAAGGAGGGGGTCATGTATTA 59.538 47.826 0.00 0.00 0.00 0.98
2901 3162 7.883311 TCCTACAAGATTTCTCTAAACCAAAGG 59.117 37.037 0.00 0.00 0.00 3.11
2902 3163 8.848474 TCCTACAAGATTTCTCTAAACCAAAG 57.152 34.615 0.00 0.00 0.00 2.77
2903 3164 9.807921 ATTCCTACAAGATTTCTCTAAACCAAA 57.192 29.630 0.00 0.00 0.00 3.28
2904 3165 9.807921 AATTCCTACAAGATTTCTCTAAACCAA 57.192 29.630 0.00 0.00 0.00 3.67
2905 3166 9.807921 AAATTCCTACAAGATTTCTCTAAACCA 57.192 29.630 0.00 0.00 0.00 3.67
2911 3172 9.898152 CCTAAGAAATTCCTACAAGATTTCTCT 57.102 33.333 10.04 5.20 39.71 3.10
2912 3173 9.892130 TCCTAAGAAATTCCTACAAGATTTCTC 57.108 33.333 10.04 0.00 39.71 2.87
2917 3178 9.676129 TCCTATCCTAAGAAATTCCTACAAGAT 57.324 33.333 0.00 0.00 0.00 2.40
2918 3179 9.676129 ATCCTATCCTAAGAAATTCCTACAAGA 57.324 33.333 0.00 0.00 0.00 3.02
2921 3182 9.676129 AGAATCCTATCCTAAGAAATTCCTACA 57.324 33.333 0.00 0.00 0.00 2.74
2952 3213 7.661968 ACCAAAGAGCTCTAAAGGAATTTTTC 58.338 34.615 26.71 0.00 0.00 2.29
2953 3214 7.603180 ACCAAAGAGCTCTAAAGGAATTTTT 57.397 32.000 26.71 9.45 0.00 1.94
2954 3215 7.603180 AACCAAAGAGCTCTAAAGGAATTTT 57.397 32.000 26.71 13.32 0.00 1.82
2955 3216 7.069950 ACAAACCAAAGAGCTCTAAAGGAATTT 59.930 33.333 26.71 17.75 0.00 1.82
2956 3217 6.551227 ACAAACCAAAGAGCTCTAAAGGAATT 59.449 34.615 26.71 19.50 0.00 2.17
2957 3218 6.071320 ACAAACCAAAGAGCTCTAAAGGAAT 58.929 36.000 26.71 16.14 0.00 3.01
2958 3219 5.445964 ACAAACCAAAGAGCTCTAAAGGAA 58.554 37.500 26.71 0.00 0.00 3.36
2959 3220 5.048846 ACAAACCAAAGAGCTCTAAAGGA 57.951 39.130 26.71 0.00 0.00 3.36
2960 3221 5.412904 CCTACAAACCAAAGAGCTCTAAAGG 59.587 44.000 18.59 20.23 0.00 3.11
2961 3222 6.231211 TCCTACAAACCAAAGAGCTCTAAAG 58.769 40.000 18.59 10.84 0.00 1.85
2962 3223 6.182507 TCCTACAAACCAAAGAGCTCTAAA 57.817 37.500 18.59 0.00 0.00 1.85
2963 3224 5.818678 TCCTACAAACCAAAGAGCTCTAA 57.181 39.130 18.59 0.00 0.00 2.10
2964 3225 5.818678 TTCCTACAAACCAAAGAGCTCTA 57.181 39.130 18.59 0.00 0.00 2.43
2965 3226 4.706842 TTCCTACAAACCAAAGAGCTCT 57.293 40.909 11.45 11.45 0.00 4.09
2966 3227 4.156739 CCATTCCTACAAACCAAAGAGCTC 59.843 45.833 5.27 5.27 0.00 4.09
2967 3228 4.082125 CCATTCCTACAAACCAAAGAGCT 58.918 43.478 0.00 0.00 0.00 4.09
2968 3229 4.079253 TCCATTCCTACAAACCAAAGAGC 58.921 43.478 0.00 0.00 0.00 4.09
2969 3230 6.840780 ATTCCATTCCTACAAACCAAAGAG 57.159 37.500 0.00 0.00 0.00 2.85
2970 3231 7.010160 AGAATTCCATTCCTACAAACCAAAGA 58.990 34.615 0.65 0.00 40.13 2.52
2971 3232 7.232118 AGAATTCCATTCCTACAAACCAAAG 57.768 36.000 0.65 0.00 40.13 2.77
2972 3233 8.893563 ATAGAATTCCATTCCTACAAACCAAA 57.106 30.769 0.65 0.00 40.13 3.28
2973 3234 8.893563 AATAGAATTCCATTCCTACAAACCAA 57.106 30.769 0.65 0.00 40.13 3.67
2974 3235 8.336235 AGAATAGAATTCCATTCCTACAAACCA 58.664 33.333 19.11 0.00 40.13 3.67
2975 3236 8.753497 AGAATAGAATTCCATTCCTACAAACC 57.247 34.615 19.11 0.00 40.13 3.27
2982 3243 9.804977 CCTTCATAAGAATAGAATTCCATTCCT 57.195 33.333 19.11 11.59 35.03 3.36
2983 3244 9.799106 TCCTTCATAAGAATAGAATTCCATTCC 57.201 33.333 19.11 5.75 35.03 3.01
3011 3272 9.843704 TCTTATGAATATGGAGGATAGGAAGAA 57.156 33.333 0.00 0.00 0.00 2.52
3012 3273 9.843704 TTCTTATGAATATGGAGGATAGGAAGA 57.156 33.333 0.00 0.00 0.00 2.87
3072 3333 9.512588 GGAGATGTCCTTTGATTCACATTATAT 57.487 33.333 0.54 0.00 40.17 0.86
3073 3334 8.908786 GGAGATGTCCTTTGATTCACATTATA 57.091 34.615 0.54 0.00 40.17 0.98
3074 3335 7.814264 GGAGATGTCCTTTGATTCACATTAT 57.186 36.000 0.54 0.00 40.17 1.28
3089 3350 7.070074 TGAGTAGGAATAGAAAAGGAGATGTCC 59.930 40.741 0.00 0.00 44.33 4.02
3090 3351 8.012957 TGAGTAGGAATAGAAAAGGAGATGTC 57.987 38.462 0.00 0.00 0.00 3.06
3091 3352 7.979786 TGAGTAGGAATAGAAAAGGAGATGT 57.020 36.000 0.00 0.00 0.00 3.06
3169 3430 9.695155 CCTCCTTTAATTCATAGGGTAAGAAAA 57.305 33.333 0.00 0.00 0.00 2.29
3170 3431 7.778382 GCCTCCTTTAATTCATAGGGTAAGAAA 59.222 37.037 0.00 0.00 0.00 2.52
3171 3432 7.287810 GCCTCCTTTAATTCATAGGGTAAGAA 58.712 38.462 0.00 0.00 0.00 2.52
3172 3433 6.183361 GGCCTCCTTTAATTCATAGGGTAAGA 60.183 42.308 0.00 0.00 0.00 2.10
3173 3434 6.004574 GGCCTCCTTTAATTCATAGGGTAAG 58.995 44.000 0.00 0.00 0.00 2.34
3174 3435 5.674958 AGGCCTCCTTTAATTCATAGGGTAA 59.325 40.000 0.00 0.00 0.00 2.85
3175 3436 5.232347 AGGCCTCCTTTAATTCATAGGGTA 58.768 41.667 0.00 0.00 0.00 3.69
3176 3437 4.055094 AGGCCTCCTTTAATTCATAGGGT 58.945 43.478 0.00 0.00 0.00 4.34
3177 3438 4.731313 AGGCCTCCTTTAATTCATAGGG 57.269 45.455 0.00 0.00 0.00 3.53
3178 3439 6.842676 AGTTAGGCCTCCTTTAATTCATAGG 58.157 40.000 9.68 0.00 34.61 2.57
3179 3440 8.624776 CAAAGTTAGGCCTCCTTTAATTCATAG 58.375 37.037 23.04 10.02 34.61 2.23
3180 3441 7.068226 GCAAAGTTAGGCCTCCTTTAATTCATA 59.932 37.037 23.04 0.00 34.61 2.15
3181 3442 6.127338 GCAAAGTTAGGCCTCCTTTAATTCAT 60.127 38.462 23.04 4.36 34.61 2.57
3182 3443 5.185056 GCAAAGTTAGGCCTCCTTTAATTCA 59.815 40.000 23.04 0.00 34.61 2.57
3183 3444 5.419155 AGCAAAGTTAGGCCTCCTTTAATTC 59.581 40.000 23.04 15.00 34.61 2.17
3184 3445 5.333581 AGCAAAGTTAGGCCTCCTTTAATT 58.666 37.500 23.04 12.81 34.61 1.40
3185 3446 4.935578 AGCAAAGTTAGGCCTCCTTTAAT 58.064 39.130 23.04 14.91 34.61 1.40
3186 3447 4.382386 AGCAAAGTTAGGCCTCCTTTAA 57.618 40.909 23.04 5.51 34.61 1.52
3187 3448 5.221966 TGTTAGCAAAGTTAGGCCTCCTTTA 60.222 40.000 23.04 10.75 34.61 1.85
3188 3449 2.980246 AGCAAAGTTAGGCCTCCTTT 57.020 45.000 19.63 19.63 34.61 3.11
3189 3450 3.073946 TGTTAGCAAAGTTAGGCCTCCTT 59.926 43.478 9.68 10.54 34.61 3.36
3190 3451 2.642807 TGTTAGCAAAGTTAGGCCTCCT 59.357 45.455 9.68 3.11 37.71 3.69
3191 3452 2.747989 GTGTTAGCAAAGTTAGGCCTCC 59.252 50.000 9.68 0.00 0.00 4.30
3192 3453 3.408634 TGTGTTAGCAAAGTTAGGCCTC 58.591 45.455 9.68 0.00 0.00 4.70
3193 3454 3.502123 TGTGTTAGCAAAGTTAGGCCT 57.498 42.857 11.78 11.78 0.00 5.19
3194 3455 3.181510 CGATGTGTTAGCAAAGTTAGGCC 60.182 47.826 0.00 0.00 0.00 5.19
3195 3456 3.435671 ACGATGTGTTAGCAAAGTTAGGC 59.564 43.478 0.00 0.00 0.00 3.93
3196 3457 6.146510 TGTTACGATGTGTTAGCAAAGTTAGG 59.853 38.462 0.00 0.00 0.00 2.69
3197 3458 7.112528 TGTTACGATGTGTTAGCAAAGTTAG 57.887 36.000 0.00 0.00 0.00 2.34
3198 3459 7.661127 ATGTTACGATGTGTTAGCAAAGTTA 57.339 32.000 0.00 0.00 0.00 2.24
3199 3460 5.994887 TGTTACGATGTGTTAGCAAAGTT 57.005 34.783 0.00 0.00 0.00 2.66
3200 3461 7.201609 CCATATGTTACGATGTGTTAGCAAAGT 60.202 37.037 1.24 0.00 0.00 2.66
3201 3462 7.125755 CCATATGTTACGATGTGTTAGCAAAG 58.874 38.462 1.24 0.00 0.00 2.77
3202 3463 6.457663 GCCATATGTTACGATGTGTTAGCAAA 60.458 38.462 1.24 0.00 0.00 3.68
3203 3464 5.007234 GCCATATGTTACGATGTGTTAGCAA 59.993 40.000 1.24 0.00 0.00 3.91
3204 3465 4.509970 GCCATATGTTACGATGTGTTAGCA 59.490 41.667 1.24 0.00 0.00 3.49
3205 3466 4.509970 TGCCATATGTTACGATGTGTTAGC 59.490 41.667 1.24 0.00 0.00 3.09
3206 3467 5.332280 CGTGCCATATGTTACGATGTGTTAG 60.332 44.000 18.67 0.00 38.72 2.34
3207 3468 4.504826 CGTGCCATATGTTACGATGTGTTA 59.495 41.667 18.67 0.00 38.72 2.41
3208 3469 3.308595 CGTGCCATATGTTACGATGTGTT 59.691 43.478 18.67 0.00 38.72 3.32
3209 3470 2.863740 CGTGCCATATGTTACGATGTGT 59.136 45.455 18.67 0.00 38.72 3.72
3210 3471 3.120041 TCGTGCCATATGTTACGATGTG 58.880 45.455 20.85 0.00 40.21 3.21
3211 3472 3.446310 TCGTGCCATATGTTACGATGT 57.554 42.857 20.85 0.00 40.21 3.06
3215 3476 2.577300 GCATCGTGCCATATGTTACG 57.423 50.000 17.83 17.83 37.42 3.18
3392 3653 2.969238 CGGCTCGTGGATGGATGC 60.969 66.667 0.00 0.00 0.00 3.91
3419 3680 4.809496 AGCCTCATGCCCTTGCGG 62.809 66.667 0.00 0.00 42.71 5.69
3420 3681 3.207669 GAGCCTCATGCCCTTGCG 61.208 66.667 0.00 0.00 42.71 4.85
3421 3682 2.832201 GGAGCCTCATGCCCTTGC 60.832 66.667 0.00 0.00 42.71 4.01
3583 3844 3.822192 AGCACGCGCACCTCGATA 61.822 61.111 5.73 0.00 42.27 2.92
3773 4034 2.605837 TCTGCGTTCAGTTGGTACAA 57.394 45.000 0.00 0.00 40.82 2.41
3929 4215 3.918102 TCGAGATCGACAACGGATG 57.082 52.632 0.00 0.00 44.22 3.51
3962 4275 4.042398 AGCGCACAATGTACGTATAGAAG 58.958 43.478 11.47 0.00 0.00 2.85
4040 4354 4.861210 ACGAGAGTGAAAGAACAGTGTAG 58.139 43.478 0.00 0.00 46.97 2.74
4153 5158 5.288472 GCAAATACGAAGGCTGGTAAAATTG 59.712 40.000 3.20 9.18 0.00 2.32
4278 6033 9.627123 AGTTGAATATCTTTCGAATCCCATAAA 57.373 29.630 0.00 0.00 0.00 1.40
4279 6034 9.273016 GAGTTGAATATCTTTCGAATCCCATAA 57.727 33.333 0.00 0.00 0.00 1.90
4280 6035 8.428852 TGAGTTGAATATCTTTCGAATCCCATA 58.571 33.333 0.00 0.00 0.00 2.74
4281 6036 7.282585 TGAGTTGAATATCTTTCGAATCCCAT 58.717 34.615 0.00 0.00 0.00 4.00
4282 6037 6.649155 TGAGTTGAATATCTTTCGAATCCCA 58.351 36.000 0.00 0.00 0.00 4.37
4283 6038 7.553881 TTGAGTTGAATATCTTTCGAATCCC 57.446 36.000 0.00 0.00 0.00 3.85
4284 6039 9.443283 CATTTGAGTTGAATATCTTTCGAATCC 57.557 33.333 0.00 0.00 0.00 3.01
4293 6048 9.399797 TGTGCTAATCATTTGAGTTGAATATCT 57.600 29.630 0.00 0.00 0.00 1.98
4294 6049 9.443283 GTGTGCTAATCATTTGAGTTGAATATC 57.557 33.333 0.00 0.00 0.00 1.63
4295 6050 8.959548 TGTGTGCTAATCATTTGAGTTGAATAT 58.040 29.630 0.00 0.00 0.00 1.28
4296 6051 8.334263 TGTGTGCTAATCATTTGAGTTGAATA 57.666 30.769 0.00 0.00 0.00 1.75
4410 6177 5.333513 CAGTCCACGAATTCTGTCTACTAC 58.666 45.833 3.52 0.00 0.00 2.73
4420 6187 5.220605 GCAGTTAATACCAGTCCACGAATTC 60.221 44.000 0.00 0.00 0.00 2.17
4426 6193 5.360144 TCTCTAGCAGTTAATACCAGTCCAC 59.640 44.000 0.00 0.00 0.00 4.02
4491 6315 5.759506 TCAAACCTCAATCGTTGCTTTAA 57.240 34.783 0.00 0.00 0.00 1.52
4501 6325 5.178067 CACCTGCATTTTTCAAACCTCAATC 59.822 40.000 0.00 0.00 0.00 2.67
4537 6361 5.017484 TCGAACACAGATGAATTTTGACG 57.983 39.130 0.00 0.00 0.00 4.35
4550 6374 1.728971 GCCATCAACTCTCGAACACAG 59.271 52.381 0.00 0.00 0.00 3.66
4640 6464 4.696877 TCATAGCCACAAATCACAACTCAG 59.303 41.667 0.00 0.00 0.00 3.35
4683 6507 4.038162 CGGAGGGAGTATTAAAGTCTCCAG 59.962 50.000 18.78 8.59 46.61 3.86
4775 6599 4.329392 AGGGTCAAAAACGGAATTACGAT 58.671 39.130 18.96 0.65 37.61 3.73
4817 6641 1.224315 CACATGCAATCGGGGGAGA 59.776 57.895 0.00 0.00 0.00 3.71
4863 6687 3.071602 CACACAATCGGGAGAGGGATATT 59.928 47.826 0.00 0.00 45.48 1.28
4864 6688 2.634940 CACACAATCGGGAGAGGGATAT 59.365 50.000 0.00 0.00 45.48 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.