Multiple sequence alignment - TraesCS1D01G289200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G289200 chr1D 100.000 9541 0 0 1 9541 387225656 387216116 0.000000e+00 17620.0
1 TraesCS1D01G289200 chr1D 84.340 530 51 13 3184 3713 338060464 338059967 3.100000e-134 490.0
2 TraesCS1D01G289200 chr1D 86.667 90 12 0 6608 6697 387218960 387219049 6.100000e-17 100.0
3 TraesCS1D01G289200 chr1A 95.099 6244 199 57 563 6738 487019730 487013526 0.000000e+00 9736.0
4 TraesCS1D01G289200 chr1A 92.454 1153 63 8 7423 8569 487012830 487011696 0.000000e+00 1626.0
5 TraesCS1D01G289200 chr1A 92.634 991 54 5 8567 9539 487011575 487010586 0.000000e+00 1408.0
6 TraesCS1D01G289200 chr1A 95.566 654 20 5 6779 7429 487013528 487012881 0.000000e+00 1038.0
7 TraesCS1D01G289200 chr1A 85.669 314 39 6 1 309 487020577 487020265 9.240000e-85 326.0
8 TraesCS1D01G289200 chr1A 90.000 90 9 0 6608 6697 487013567 487013656 6.050000e-22 117.0
9 TraesCS1D01G289200 chr1B 94.347 5484 195 53 348 5761 520530464 520525026 0.000000e+00 8303.0
10 TraesCS1D01G289200 chr1B 90.070 1420 94 21 7423 8825 520523184 520521795 0.000000e+00 1797.0
11 TraesCS1D01G289200 chr1B 97.771 628 11 3 6011 6637 520524733 520524108 0.000000e+00 1079.0
12 TraesCS1D01G289200 chr1B 92.564 659 37 3 8891 9539 520517713 520517057 0.000000e+00 935.0
13 TraesCS1D01G289200 chr1B 97.749 311 7 0 6968 7278 520523753 520523443 3.920000e-148 536.0
14 TraesCS1D01G289200 chr1B 84.741 367 34 15 6 363 520530841 520530488 1.970000e-91 348.0
15 TraesCS1D01G289200 chr1B 95.305 213 7 1 7217 7429 520523444 520523235 1.540000e-87 335.0
16 TraesCS1D01G289200 chr1B 92.746 193 9 3 6779 6969 520524103 520523914 3.390000e-69 274.0
17 TraesCS1D01G289200 chr1B 75.410 305 38 23 2609 2900 648258295 648258575 7.830000e-21 113.0
18 TraesCS1D01G289200 chr1B 98.246 57 1 0 5956 6012 520525027 520524971 6.100000e-17 100.0
19 TraesCS1D01G289200 chr1B 93.443 61 4 0 8839 8899 520521751 520521691 3.670000e-14 91.6
20 TraesCS1D01G289200 chr3D 85.784 612 57 12 3588 4190 421767670 421768260 1.050000e-173 621.0
21 TraesCS1D01G289200 chr3D 91.045 67 6 0 5284 5350 459212268 459212202 3.670000e-14 91.6
22 TraesCS1D01G289200 chr3D 96.364 55 2 0 1256 1310 459217601 459217547 3.670000e-14 91.6
23 TraesCS1D01G289200 chr7B 84.528 530 56 10 3184 3713 122425618 122425115 1.430000e-137 501.0
24 TraesCS1D01G289200 chr3A 84.440 527 56 10 3184 3710 688454206 688454706 6.660000e-136 496.0
25 TraesCS1D01G289200 chr3A 79.121 182 14 6 3344 3524 573514304 573514146 4.710000e-18 104.0
26 TraesCS1D01G289200 chr3A 84.158 101 10 6 1250 1347 601403994 601403897 1.020000e-14 93.5
27 TraesCS1D01G289200 chr3A 91.045 67 6 0 5284 5350 601398690 601398624 3.670000e-14 91.6
28 TraesCS1D01G289200 chr2B 83.365 529 58 14 3184 3710 357148795 357149295 6.750000e-126 462.0
29 TraesCS1D01G289200 chr2B 75.658 304 39 21 2609 2900 138128029 138128309 1.680000e-22 119.0
30 TraesCS1D01G289200 chr2B 78.571 154 33 0 9298 9451 762048778 762048931 1.700000e-17 102.0
31 TraesCS1D01G289200 chr5A 83.019 530 60 11 3184 3713 104323405 104322906 4.060000e-123 453.0
32 TraesCS1D01G289200 chr5A 82.830 530 60 12 3184 3713 647492632 647492134 6.800000e-121 446.0
33 TraesCS1D01G289200 chr5A 74.667 300 43 20 2612 2900 42133622 42133345 1.700000e-17 102.0
34 TraesCS1D01G289200 chr6A 84.746 354 31 8 3321 3672 214804365 214804033 5.520000e-87 333.0
35 TraesCS1D01G289200 chr6A 89.552 67 6 1 3344 3409 214804025 214803959 6.140000e-12 84.2
36 TraesCS1D01G289200 chr6D 79.916 239 45 3 9258 9495 4181786 4182022 1.270000e-38 172.0
37 TraesCS1D01G289200 chr2A 76.871 294 65 2 9194 9487 752996228 752996518 7.670000e-36 163.0
38 TraesCS1D01G289200 chr2D 76.531 294 66 2 9194 9487 621313090 621313380 3.570000e-34 158.0
39 TraesCS1D01G289200 chr2D 76.569 239 49 5 9298 9534 621308569 621308802 3.620000e-24 124.0
40 TraesCS1D01G289200 chr2D 75.829 211 51 0 9298 9508 621127227 621127437 3.640000e-19 108.0
41 TraesCS1D01G289200 chr2D 78.571 154 33 0 9298 9451 621134887 621135040 1.700000e-17 102.0
42 TraesCS1D01G289200 chr7A 75.748 301 38 20 2612 2900 299579396 299579119 1.680000e-22 119.0
43 TraesCS1D01G289200 chr4A 86.486 111 12 3 7087 7195 201794414 201794523 1.680000e-22 119.0
44 TraesCS1D01G289200 chr4A 75.658 304 39 21 2609 2900 374364434 374364714 1.680000e-22 119.0
45 TraesCS1D01G289200 chr4A 73.009 452 78 29 2461 2900 501981937 501982356 1.680000e-22 119.0
46 TraesCS1D01G289200 chrUn 75.000 304 41 21 2609 2900 122296829 122297109 3.640000e-19 108.0
47 TraesCS1D01G289200 chr4D 86.207 87 12 0 9025 9111 441653635 441653549 2.840000e-15 95.3
48 TraesCS1D01G289200 chr4D 86.207 87 12 0 9025 9111 441810447 441810361 2.840000e-15 95.3
49 TraesCS1D01G289200 chr3B 89.552 67 7 0 5284 5350 606574975 606574909 1.710000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G289200 chr1D 387216116 387225656 9540 True 17620.00 17620 100.0000 1 9541 1 chr1D.!!$R2 9540
1 TraesCS1D01G289200 chr1A 487010586 487020577 9991 True 2826.80 9736 92.2844 1 9539 5 chr1A.!!$R1 9538
2 TraesCS1D01G289200 chr1B 520517057 520530841 13784 True 1379.86 8303 93.6982 6 9539 10 chr1B.!!$R1 9533
3 TraesCS1D01G289200 chr3D 421767670 421768260 590 False 621.00 621 85.7840 3588 4190 1 chr3D.!!$F1 602
4 TraesCS1D01G289200 chr7B 122425115 122425618 503 True 501.00 501 84.5280 3184 3713 1 chr7B.!!$R1 529
5 TraesCS1D01G289200 chr3A 688454206 688454706 500 False 496.00 496 84.4400 3184 3710 1 chr3A.!!$F1 526
6 TraesCS1D01G289200 chr2B 357148795 357149295 500 False 462.00 462 83.3650 3184 3710 1 chr2B.!!$F2 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 348 0.038744 ACCCAATCACCTCAAGGCAG 59.961 55.000 0.00 0.00 39.32 4.85 F
774 1094 0.386352 TGTTTACTCGCTGTCGACCG 60.386 55.000 14.12 10.56 40.21 4.79 F
1066 1402 0.401395 TTCCCCAGTCCAGTCCAGTT 60.401 55.000 0.00 0.00 0.00 3.16 F
1544 1924 0.672401 TTCGATTCCACGTGCTTCCC 60.672 55.000 10.91 0.00 34.70 3.97 F
3050 3467 0.178964 TGCCCAGAACTTTTCCAGGG 60.179 55.000 8.88 8.88 44.26 4.45 F
3687 4105 4.513442 TGTGATGTTGGCAGTTACTATCC 58.487 43.478 0.00 0.00 0.00 2.59 F
4284 4718 0.034896 GGGAGAAGTTGGTGAAGCGA 59.965 55.000 0.00 0.00 0.00 4.93 F
4786 5223 0.324943 TGCAGTCTTTAGCTGGGTCC 59.675 55.000 0.00 0.00 34.73 4.46 F
5042 5479 0.388520 TGTTGCAGACGGAGATGTCG 60.389 55.000 0.00 0.00 43.70 4.35 F
5440 5877 1.067364 TCTAGTTGCCACGTTTCACGA 59.933 47.619 2.75 0.00 46.05 4.35 F
6758 7439 1.164411 TGGGTACGTGTACACTACGG 58.836 55.000 23.01 10.41 45.24 4.02 F
7836 8862 0.392193 CCAGCTTGCCAGTCCAGTAG 60.392 60.000 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1680 2071 0.771127 AGCACAAAACCTAGCCTCCA 59.229 50.000 0.00 0.00 0.00 3.86 R
1688 2079 0.944386 CTACACGCAGCACAAAACCT 59.056 50.000 0.00 0.00 0.00 3.50 R
2381 2787 1.667830 AACACGCAGACCCATCACG 60.668 57.895 0.00 0.00 34.02 4.35 R
3062 3479 3.703052 AGGCATTTCTTCCAACATCATCC 59.297 43.478 0.00 0.00 0.00 3.51 R
3854 4273 0.254462 TAAATGAGGCCCATCGCACA 59.746 50.000 0.00 0.00 40.31 4.57 R
4786 5223 0.318445 GCTGGCTGCTGTCAAAAGTG 60.318 55.000 9.31 0.00 38.95 3.16 R
5563 6000 0.321564 TGGGATTCCAAGTCACAGCG 60.322 55.000 4.80 0.00 40.73 5.18 R
6775 7456 0.178998 ATGCCTGAGCCATCATGGTC 60.179 55.000 5.31 2.49 40.46 4.02 R
6819 7501 0.767998 TGTGTGACCTGGGCAATACA 59.232 50.000 14.85 14.85 0.00 2.29 R
6820 7502 2.128771 ATGTGTGACCTGGGCAATAC 57.871 50.000 2.31 7.59 0.00 1.89 R
8133 9159 0.827507 TGGGTGCTTCTTCCCTTTGC 60.828 55.000 0.00 0.00 43.74 3.68 R
9241 14431 0.037975 TTTTCACCTACGTCGCCCTC 60.038 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.846693 AAAGAGCCCCTGTCTGTTGT 59.153 50.000 0.00 0.00 0.00 3.32
39 40 1.841556 TTGTCAGACTTCCCGGGCT 60.842 57.895 18.49 3.48 0.00 5.19
41 42 2.683933 TCAGACTTCCCGGGCTCC 60.684 66.667 18.49 4.61 0.00 4.70
103 108 2.861935 CCCGATACATTACACCGTCAAC 59.138 50.000 0.00 0.00 0.00 3.18
104 109 3.513662 CCGATACATTACACCGTCAACA 58.486 45.455 0.00 0.00 0.00 3.33
105 110 3.305094 CCGATACATTACACCGTCAACAC 59.695 47.826 0.00 0.00 0.00 3.32
167 176 3.303049 GCTTGGAATGAAATGGGATCCT 58.697 45.455 12.58 0.00 0.00 3.24
168 177 4.473444 GCTTGGAATGAAATGGGATCCTA 58.527 43.478 12.58 5.82 0.00 2.94
173 182 5.373555 TGGAATGAAATGGGATCCTAGACAT 59.626 40.000 12.58 9.77 0.00 3.06
202 211 4.680702 TGTGTGTTGTTCATGTGAAATGG 58.319 39.130 0.00 0.00 35.58 3.16
212 221 2.940994 TGTGAAATGGAAGGGACGAA 57.059 45.000 0.00 0.00 0.00 3.85
223 232 4.200092 GGAAGGGACGAAAGAGCAATTAT 58.800 43.478 0.00 0.00 0.00 1.28
250 259 8.054572 TGTAATACCCCCATTAAACTAACTTCC 58.945 37.037 0.00 0.00 0.00 3.46
251 260 6.661740 ATACCCCCATTAAACTAACTTCCA 57.338 37.500 0.00 0.00 0.00 3.53
252 261 5.546035 ACCCCCATTAAACTAACTTCCAT 57.454 39.130 0.00 0.00 0.00 3.41
254 263 7.233855 ACCCCCATTAAACTAACTTCCATAT 57.766 36.000 0.00 0.00 0.00 1.78
273 283 8.722480 TCCATATTGTACAGTGATTTTCTCAG 57.278 34.615 0.34 0.00 33.51 3.35
281 291 6.727824 ACAGTGATTTTCTCAGATTAACGG 57.272 37.500 0.00 0.00 33.51 4.44
282 292 6.231211 ACAGTGATTTTCTCAGATTAACGGT 58.769 36.000 0.00 0.00 33.51 4.83
298 308 6.928979 TTAACGGTCAGAAGAATTTCAACA 57.071 33.333 0.00 0.00 35.70 3.33
300 310 5.424121 ACGGTCAGAAGAATTTCAACAAG 57.576 39.130 0.00 0.00 35.70 3.16
301 311 5.123227 ACGGTCAGAAGAATTTCAACAAGA 58.877 37.500 0.00 0.00 35.70 3.02
302 312 5.588648 ACGGTCAGAAGAATTTCAACAAGAA 59.411 36.000 0.00 0.00 35.70 2.52
330 340 2.714250 TGAAAGTACCACCCAATCACCT 59.286 45.455 0.00 0.00 0.00 4.00
335 345 0.405585 ACCACCCAATCACCTCAAGG 59.594 55.000 0.00 0.00 42.17 3.61
338 348 0.038744 ACCCAATCACCTCAAGGCAG 59.961 55.000 0.00 0.00 39.32 4.85
376 425 5.470098 CCCAATAAAGTAGATCAATCACCGG 59.530 44.000 0.00 0.00 0.00 5.28
421 470 4.936891 AGCAATGACAGAAAACTTTGACC 58.063 39.130 0.00 0.00 0.00 4.02
422 471 3.730715 GCAATGACAGAAAACTTTGACCG 59.269 43.478 0.00 0.00 0.00 4.79
435 484 4.275810 ACTTTGACCGCACTATAGGTAGA 58.724 43.478 4.43 0.00 41.51 2.59
447 496 3.724732 ATAGGTAGATCTCCGAGGGTC 57.275 52.381 0.00 0.00 0.00 4.46
454 503 2.822643 ATCTCCGAGGGTCTTGGGCA 62.823 60.000 0.00 0.00 35.77 5.36
472 521 1.192534 GCAAAGACGACTTCGGTTCAG 59.807 52.381 0.00 0.00 44.95 3.02
497 546 2.226437 TGAAAGTGCTTCGAAAGGCATC 59.774 45.455 14.28 9.23 40.66 3.91
500 549 1.537202 AGTGCTTCGAAAGGCATCAAC 59.463 47.619 14.28 3.14 40.66 3.18
513 562 4.482030 AGGCATCAACATATATTTGGCCA 58.518 39.130 0.00 0.00 35.10 5.36
515 564 4.039004 GGCATCAACATATATTTGGCCACA 59.961 41.667 3.88 0.00 33.69 4.17
516 565 4.984161 GCATCAACATATATTTGGCCACAC 59.016 41.667 3.88 0.00 0.00 3.82
517 566 5.451659 GCATCAACATATATTTGGCCACACA 60.452 40.000 3.88 0.00 0.00 3.72
526 842 0.887247 TTGGCCACACATGCACATAC 59.113 50.000 3.88 0.00 0.00 2.39
530 846 1.942657 GCCACACATGCACATACCTAG 59.057 52.381 0.00 0.00 0.00 3.02
538 854 7.222805 CACACATGCACATACCTAGTTAACTAG 59.777 40.741 28.63 28.63 44.22 2.57
647 964 6.104146 ACACCACCATATACATGCGTATTA 57.896 37.500 0.00 0.00 39.17 0.98
696 1013 6.823689 TCAAAAATCGGGGTTTTGAATTTTCA 59.176 30.769 15.02 0.00 46.61 2.69
697 1014 6.859420 AAAATCGGGGTTTTGAATTTTCAG 57.141 33.333 0.00 0.00 38.61 3.02
700 1017 4.939271 TCGGGGTTTTGAATTTTCAGAAC 58.061 39.130 14.89 14.89 45.96 3.01
774 1094 0.386352 TGTTTACTCGCTGTCGACCG 60.386 55.000 14.12 10.56 40.21 4.79
808 1135 2.202479 GAAAAGATGCGGCGGTGC 60.202 61.111 9.78 0.00 0.00 5.01
967 1299 1.079819 CGGCGGACACAAGTCTCAT 60.080 57.895 0.00 0.00 44.36 2.90
976 1308 2.289072 ACACAAGTCTCATGGAACGGAG 60.289 50.000 0.00 0.00 34.34 4.63
991 1323 2.430367 GAGCCAACCAACCTCCGT 59.570 61.111 0.00 0.00 0.00 4.69
1066 1402 0.401395 TTCCCCAGTCCAGTCCAGTT 60.401 55.000 0.00 0.00 0.00 3.16
1216 1559 4.787280 CTCCACTCCGCTCCCCCT 62.787 72.222 0.00 0.00 0.00 4.79
1489 1869 2.826738 GCCTCGTCTCGCTCCTCT 60.827 66.667 0.00 0.00 0.00 3.69
1502 1882 1.551452 CTCCTCTCCTCTGTTCCGTT 58.449 55.000 0.00 0.00 0.00 4.44
1521 1901 2.962253 CGAGATTTCCGCTCCGCC 60.962 66.667 0.00 0.00 0.00 6.13
1544 1924 0.672401 TTCGATTCCACGTGCTTCCC 60.672 55.000 10.91 0.00 34.70 3.97
1678 2069 2.569404 GTCTCTGGATCCCATACCCATC 59.431 54.545 9.90 0.00 30.82 3.51
1680 2071 3.116199 TCTCTGGATCCCATACCCATCTT 60.116 47.826 9.90 0.00 30.82 2.40
1688 2079 2.338809 CCATACCCATCTTGGAGGCTA 58.661 52.381 0.00 0.00 40.96 3.93
1715 2107 0.740868 TGCTGCGTGTAGATTGGCTC 60.741 55.000 0.00 0.00 0.00 4.70
1747 2140 5.048083 TGGGTGAATTGCTGAATTTAGTGAC 60.048 40.000 0.00 0.00 31.58 3.67
1853 2246 2.859538 GTTGCGGCATGGTCATATTTTG 59.140 45.455 2.28 0.00 0.00 2.44
1890 2283 6.478512 TTTTCTAGCAATTTTTGTCTGGGT 57.521 33.333 0.00 0.00 0.00 4.51
2082 2480 2.002505 AGGAGTACGCAGGCATCTAT 57.997 50.000 0.00 0.00 0.00 1.98
2112 2510 2.497107 ATGCACGCCTGAATTATTGC 57.503 45.000 0.00 0.00 0.00 3.56
2119 2517 5.334802 GCACGCCTGAATTATTGCATGTATA 60.335 40.000 0.00 0.00 0.00 1.47
2381 2787 2.401766 CCTGGGCAACATCGAGCAC 61.402 63.158 0.00 0.00 39.74 4.40
2681 3087 4.336713 CAGCCTGTTTCCTATAGCTTTTCC 59.663 45.833 0.00 0.00 0.00 3.13
2965 3382 7.015682 TGCCATGGAAAAGTATTGTCCTTTTTA 59.984 33.333 18.40 0.00 41.05 1.52
3019 3436 2.809665 GCCAATTTGACACATTTGGGCA 60.810 45.455 9.64 0.00 39.21 5.36
3050 3467 0.178964 TGCCCAGAACTTTTCCAGGG 60.179 55.000 8.88 8.88 44.26 4.45
3176 3593 5.083122 CCATTAATGCCACCCCACATATTA 58.917 41.667 10.11 0.00 0.00 0.98
3278 3695 4.776308 ACTACTGGACCCAAAACCTACTAG 59.224 45.833 0.00 0.00 0.00 2.57
3289 3706 6.093082 CCCAAAACCTACTAGTAAATGGTTCG 59.907 42.308 19.81 15.18 39.74 3.95
3560 3978 9.075678 CCCTATGATCTCAAAATAGCTCATTTT 57.924 33.333 0.00 0.00 45.72 1.82
3687 4105 4.513442 TGTGATGTTGGCAGTTACTATCC 58.487 43.478 0.00 0.00 0.00 2.59
3833 4252 5.876460 TCCCGAAATTAGGTTAGCAACTTAC 59.124 40.000 0.00 0.00 0.00 2.34
3865 4284 1.202394 TGCATTATTTGTGCGATGGGC 60.202 47.619 0.00 0.00 45.37 5.36
3890 4309 8.860128 GCCTCATTTAGTAAATAACTGCAAAAC 58.140 33.333 7.80 0.00 39.39 2.43
3891 4310 9.353999 CCTCATTTAGTAAATAACTGCAAAACC 57.646 33.333 7.80 0.00 39.39 3.27
3948 4367 4.074970 CAGCAAATCACTTGGACTACCTT 58.925 43.478 0.00 0.00 35.38 3.50
4209 4643 8.594881 AATCTGGTGTAACGATTCTATTGATC 57.405 34.615 0.00 0.00 38.12 2.92
4284 4718 0.034896 GGGAGAAGTTGGTGAAGCGA 59.965 55.000 0.00 0.00 0.00 4.93
4355 4789 5.121105 TCTGATCTTAATGGCTGTCACATG 58.879 41.667 0.00 0.00 0.00 3.21
4356 4790 3.628942 TGATCTTAATGGCTGTCACATGC 59.371 43.478 0.00 0.00 0.00 4.06
4421 4855 4.817464 TCTTTATTGTTGTGTAAGCACCGT 59.183 37.500 0.00 0.00 44.65 4.83
4422 4856 5.990386 TCTTTATTGTTGTGTAAGCACCGTA 59.010 36.000 0.00 0.00 44.65 4.02
4598 5032 2.814336 CCTTGCACTCCTGGAGTTTTAC 59.186 50.000 26.37 15.93 41.37 2.01
4630 5064 5.065988 AGCACAGTTTTGATTTGTCGTACTT 59.934 36.000 0.00 0.00 0.00 2.24
4631 5065 5.395486 GCACAGTTTTGATTTGTCGTACTTC 59.605 40.000 0.00 0.00 0.00 3.01
4693 5130 6.111382 TCTCATGAATTGGATTGAGACTGAC 58.889 40.000 0.00 0.00 39.61 3.51
4786 5223 0.324943 TGCAGTCTTTAGCTGGGTCC 59.675 55.000 0.00 0.00 34.73 4.46
4891 5328 1.750193 AACACCGGCCATCTGTTATG 58.250 50.000 0.00 0.00 0.00 1.90
4983 5420 2.031258 TTCAAACGTGAGCCTGAACA 57.969 45.000 0.00 0.00 34.49 3.18
5042 5479 0.388520 TGTTGCAGACGGAGATGTCG 60.389 55.000 0.00 0.00 43.70 4.35
5066 5503 1.479709 AGAGGGTGATTCTGGAGACG 58.520 55.000 0.00 0.00 0.00 4.18
5114 5551 6.169094 ACAGTCAATTCTGAGATTGATTCGT 58.831 36.000 14.08 10.54 45.00 3.85
5189 5626 2.412325 CCGTATTCAAGTCGTTGCAACC 60.412 50.000 23.42 10.71 33.23 3.77
5199 5636 1.875963 GTTGCAACCTGTGATCCCG 59.124 57.895 19.15 0.00 0.00 5.14
5393 5830 4.044336 TGATTTTTGTCACAGGTTGCTG 57.956 40.909 0.00 0.00 0.00 4.41
5394 5831 3.698539 TGATTTTTGTCACAGGTTGCTGA 59.301 39.130 0.00 0.00 0.00 4.26
5406 5843 3.003689 CAGGTTGCTGAAACAATCGTTCT 59.996 43.478 0.11 0.00 40.86 3.01
5438 5875 3.064207 TGATCTAGTTGCCACGTTTCAC 58.936 45.455 0.00 0.00 0.00 3.18
5440 5877 1.067364 TCTAGTTGCCACGTTTCACGA 59.933 47.619 2.75 0.00 46.05 4.35
5470 5907 2.906389 TGTTCTAGTGTGCTGGAAGGAT 59.094 45.455 0.00 0.00 41.77 3.24
5563 6000 3.996363 GCTGTTTGATGGTCCAATTTTCC 59.004 43.478 0.00 0.00 0.00 3.13
5566 6003 2.214376 TGATGGTCCAATTTTCCGCT 57.786 45.000 0.00 0.00 0.00 5.52
5567 6004 1.818060 TGATGGTCCAATTTTCCGCTG 59.182 47.619 0.00 0.00 0.00 5.18
5575 6012 2.607771 CCAATTTTCCGCTGTGACTTGG 60.608 50.000 0.00 0.00 0.00 3.61
5645 6083 4.632153 TGCTTCAGTCTAAGTGTTCCTTC 58.368 43.478 0.00 0.00 34.46 3.46
5652 6090 9.847224 TTCAGTCTAAGTGTTCCTTCTTAATTT 57.153 29.630 0.00 0.00 34.46 1.82
6002 6443 5.428253 TCACCAAATTATAGTCTCTGCCAC 58.572 41.667 0.00 0.00 0.00 5.01
6039 6719 4.058721 TCGATGACTGACATATGGTTGG 57.941 45.455 7.80 0.00 39.56 3.77
6044 6724 6.457392 CGATGACTGACATATGGTTGGAAAAG 60.457 42.308 7.80 0.00 39.56 2.27
6052 6732 8.956426 TGACATATGGTTGGAAAAGTAATCTTC 58.044 33.333 7.80 0.00 32.90 2.87
6191 6872 7.549134 TGTTATCGCTTCACAAATGTATCTCTT 59.451 33.333 0.00 0.00 0.00 2.85
6448 7129 1.188863 AACTGAAATCCCAGGCATGC 58.811 50.000 9.90 9.90 38.44 4.06
6522 7203 9.590451 AGATTTTGGCATATGTATCAACAAAAG 57.410 29.630 4.29 0.00 39.58 2.27
6528 7209 7.812191 TGGCATATGTATCAACAAAAGAAACAC 59.188 33.333 4.29 0.00 39.58 3.32
6552 7233 7.010367 CACACACTTGTTCAAAATAGTTGCAAT 59.990 33.333 0.59 0.00 31.66 3.56
6572 7253 6.538381 TGCAATATTCGCTCAAAAGATGTCTA 59.462 34.615 10.04 0.00 0.00 2.59
6735 7416 5.902681 TCCTAAGTCGAATCACTGTATTGG 58.097 41.667 0.00 0.00 0.00 3.16
6736 7417 5.655090 TCCTAAGTCGAATCACTGTATTGGA 59.345 40.000 0.00 0.00 0.00 3.53
6737 7418 6.323996 TCCTAAGTCGAATCACTGTATTGGAT 59.676 38.462 0.00 0.00 0.00 3.41
6738 7419 6.986817 CCTAAGTCGAATCACTGTATTGGATT 59.013 38.462 0.00 0.00 34.16 3.01
6739 7420 7.495934 CCTAAGTCGAATCACTGTATTGGATTT 59.504 37.037 0.00 0.00 31.77 2.17
6740 7421 6.668541 AGTCGAATCACTGTATTGGATTTG 57.331 37.500 0.00 0.00 34.94 2.32
6741 7422 5.586243 AGTCGAATCACTGTATTGGATTTGG 59.414 40.000 0.00 0.00 34.57 3.28
6742 7423 4.881273 TCGAATCACTGTATTGGATTTGGG 59.119 41.667 0.00 0.00 34.57 4.12
6743 7424 4.640201 CGAATCACTGTATTGGATTTGGGT 59.360 41.667 0.00 0.00 31.77 4.51
6744 7425 5.820423 CGAATCACTGTATTGGATTTGGGTA 59.180 40.000 0.00 0.00 31.77 3.69
6745 7426 6.238374 CGAATCACTGTATTGGATTTGGGTAC 60.238 42.308 0.00 0.00 31.77 3.34
6746 7427 4.509616 TCACTGTATTGGATTTGGGTACG 58.490 43.478 0.00 0.00 0.00 3.67
6747 7428 4.020039 TCACTGTATTGGATTTGGGTACGT 60.020 41.667 0.00 0.00 0.00 3.57
6748 7429 4.094294 CACTGTATTGGATTTGGGTACGTG 59.906 45.833 0.00 0.00 0.00 4.49
6749 7430 4.258543 CTGTATTGGATTTGGGTACGTGT 58.741 43.478 0.00 0.00 0.00 4.49
6750 7431 5.046448 ACTGTATTGGATTTGGGTACGTGTA 60.046 40.000 0.00 0.00 0.00 2.90
6751 7432 5.177326 TGTATTGGATTTGGGTACGTGTAC 58.823 41.667 0.00 1.49 35.40 2.90
6752 7433 3.766068 TTGGATTTGGGTACGTGTACA 57.234 42.857 11.89 0.00 37.78 2.90
6753 7434 3.042871 TGGATTTGGGTACGTGTACAC 57.957 47.619 16.32 16.32 39.82 2.90
6754 7435 2.633967 TGGATTTGGGTACGTGTACACT 59.366 45.455 23.01 12.74 40.06 3.55
6755 7436 3.831333 TGGATTTGGGTACGTGTACACTA 59.169 43.478 23.01 11.80 40.06 2.74
6756 7437 4.176271 GGATTTGGGTACGTGTACACTAC 58.824 47.826 23.01 20.72 40.06 2.73
6757 7438 2.987413 TTGGGTACGTGTACACTACG 57.013 50.000 23.01 13.09 46.31 3.51
6758 7439 1.164411 TGGGTACGTGTACACTACGG 58.836 55.000 23.01 10.41 45.24 4.02
6759 7440 1.271108 TGGGTACGTGTACACTACGGA 60.271 52.381 23.01 4.75 45.24 4.69
6760 7441 2.017049 GGGTACGTGTACACTACGGAT 58.983 52.381 23.01 4.99 45.24 4.18
6761 7442 2.423538 GGGTACGTGTACACTACGGATT 59.576 50.000 23.01 0.00 45.24 3.01
6762 7443 3.487544 GGGTACGTGTACACTACGGATTC 60.488 52.174 23.01 10.70 45.24 2.52
6763 7444 3.375299 GGTACGTGTACACTACGGATTCT 59.625 47.826 23.01 0.00 45.24 2.40
6764 7445 3.482722 ACGTGTACACTACGGATTCTG 57.517 47.619 23.01 6.55 45.24 3.02
6765 7446 3.076621 ACGTGTACACTACGGATTCTGA 58.923 45.455 23.01 0.00 45.24 3.27
6766 7447 3.126514 ACGTGTACACTACGGATTCTGAG 59.873 47.826 23.01 5.87 45.24 3.35
6767 7448 3.373130 CGTGTACACTACGGATTCTGAGA 59.627 47.826 23.01 0.00 37.86 3.27
6768 7449 4.494362 CGTGTACACTACGGATTCTGAGAG 60.494 50.000 23.01 0.00 37.86 3.20
6769 7450 3.945921 TGTACACTACGGATTCTGAGAGG 59.054 47.826 0.00 0.00 0.00 3.69
6770 7451 3.367646 ACACTACGGATTCTGAGAGGA 57.632 47.619 0.00 0.00 0.00 3.71
6771 7452 3.698289 ACACTACGGATTCTGAGAGGAA 58.302 45.455 0.00 0.00 0.00 3.36
6772 7453 4.087182 ACACTACGGATTCTGAGAGGAAA 58.913 43.478 0.00 0.00 0.00 3.13
6773 7454 4.158764 ACACTACGGATTCTGAGAGGAAAG 59.841 45.833 0.00 0.00 0.00 2.62
6774 7455 4.158764 CACTACGGATTCTGAGAGGAAAGT 59.841 45.833 0.00 0.00 0.00 2.66
6775 7456 3.601443 ACGGATTCTGAGAGGAAAGTG 57.399 47.619 0.00 0.00 0.00 3.16
6776 7457 3.165875 ACGGATTCTGAGAGGAAAGTGA 58.834 45.455 0.00 0.00 0.00 3.41
6777 7458 3.056465 ACGGATTCTGAGAGGAAAGTGAC 60.056 47.826 0.00 0.00 0.00 3.67
6892 7576 7.851228 ACATACCATATCTTGTGTTCTCAGAA 58.149 34.615 0.00 0.00 0.00 3.02
6947 7631 9.507280 AGCAATGTTTGTATTAATGAAGAATCG 57.493 29.630 0.00 0.00 0.00 3.34
6962 7646 4.712122 AGAATCGAACTCCAGTCTCTTC 57.288 45.455 0.00 0.00 0.00 2.87
6963 7647 4.340617 AGAATCGAACTCCAGTCTCTTCT 58.659 43.478 0.00 0.00 0.00 2.85
7022 7868 6.124340 TGTCAGAATTGATATGCAATGAGGT 58.876 36.000 0.00 0.00 46.25 3.85
7075 7921 2.050144 ACTCATCAGGGTGACAACACT 58.950 47.619 0.00 0.00 42.36 3.55
7238 8144 4.713814 AGGTATCTCAGTCTTGCATCTTCA 59.286 41.667 0.00 0.00 0.00 3.02
7264 8170 1.189524 TGTAGTACCAAGCGGCCTGT 61.190 55.000 0.00 0.00 34.57 4.00
7341 8247 8.545229 ACTATCTGAAGTTCTGAACATCTTTG 57.455 34.615 21.82 13.92 30.83 2.77
7346 8252 3.825328 AGTTCTGAACATCTTTGGTGCT 58.175 40.909 21.50 0.00 0.00 4.40
7347 8253 4.973168 AGTTCTGAACATCTTTGGTGCTA 58.027 39.130 21.50 0.00 0.00 3.49
7348 8254 4.999950 AGTTCTGAACATCTTTGGTGCTAG 59.000 41.667 21.50 0.00 0.00 3.42
7412 8318 5.319043 TGTAGAAGTTTGATTCCCCACTT 57.681 39.130 0.00 0.00 32.02 3.16
7457 8477 4.081406 AGCAGTGACATCAAAAGGCAATA 58.919 39.130 0.00 0.00 0.00 1.90
7458 8478 4.523943 AGCAGTGACATCAAAAGGCAATAA 59.476 37.500 0.00 0.00 0.00 1.40
7488 8508 1.074405 AGCCACTGGAACACATGATGT 59.926 47.619 0.00 0.00 46.42 3.06
7502 8522 2.034066 ATGTGGGTGGTTCTGGCG 59.966 61.111 0.00 0.00 0.00 5.69
7618 8638 6.823182 CCTGTCATAGTGTTCCAATGTTGATA 59.177 38.462 0.00 0.00 0.00 2.15
7677 8697 5.191426 CACAAGATGATTCATTCCAGGAGT 58.809 41.667 0.00 0.00 0.00 3.85
7709 8729 6.092259 CCAGAAGAATAAACTTACTTGGACCG 59.908 42.308 0.00 0.00 32.61 4.79
7721 8741 1.264288 CTTGGACCGTTTTCACTGAGC 59.736 52.381 0.00 0.00 0.00 4.26
7767 8793 5.069781 ACTTACTCTGACCAATAGATGAGGC 59.930 44.000 0.00 0.00 0.00 4.70
7778 8804 4.927978 ATAGATGAGGCGCCTGATATAC 57.072 45.455 38.41 19.61 0.00 1.47
7833 8859 2.360852 CCCAGCTTGCCAGTCCAG 60.361 66.667 0.00 0.00 0.00 3.86
7836 8862 0.392193 CCAGCTTGCCAGTCCAGTAG 60.392 60.000 0.00 0.00 0.00 2.57
7896 8922 5.749109 CCCTGTACTTGAGATAAAAGCTACG 59.251 44.000 0.00 0.00 0.00 3.51
7908 8934 1.742761 AAGCTACGCATGTCAGCATT 58.257 45.000 14.85 6.30 37.78 3.56
7909 8935 2.602257 AGCTACGCATGTCAGCATTA 57.398 45.000 14.85 0.00 37.78 1.90
7973 8999 7.064847 GTGATATTTTCAAATGGAAGCAATGCA 59.935 33.333 8.35 0.00 36.72 3.96
7986 9012 8.845413 TGGAAGCAATGCAAATTAGTTAAAAT 57.155 26.923 8.35 0.00 0.00 1.82
7987 9013 9.282569 TGGAAGCAATGCAAATTAGTTAAAATT 57.717 25.926 8.35 0.00 0.00 1.82
7988 9014 9.759259 GGAAGCAATGCAAATTAGTTAAAATTC 57.241 29.630 8.35 0.00 0.00 2.17
8066 9092 2.011046 GCACTGACCTGCCAAGATCTC 61.011 57.143 0.00 0.00 0.00 2.75
8082 9108 6.150809 CCAAGATCTCTTCTTTTCAGGGAAAG 59.849 42.308 0.00 0.00 42.15 2.62
8124 9150 2.417933 CACAGATGCCAAGCTTACAGAC 59.582 50.000 0.00 0.07 0.00 3.51
8128 9154 0.670546 TGCCAAGCTTACAGACGCTC 60.671 55.000 0.00 0.00 34.96 5.03
8133 9159 2.575694 AGCTTACAGACGCTCATGAG 57.424 50.000 18.84 18.84 0.00 2.90
8147 9173 2.422832 CTCATGAGCAAAGGGAAGAAGC 59.577 50.000 10.38 0.00 0.00 3.86
8151 9177 0.540597 AGCAAAGGGAAGAAGCACCC 60.541 55.000 0.00 0.00 45.88 4.61
8190 9216 4.040445 ACATGGAGAAACACAAAAACCG 57.960 40.909 0.00 0.00 0.00 4.44
8219 9245 4.080919 TGAATGGACAGTAGAATCACCCAG 60.081 45.833 0.00 0.00 0.00 4.45
8363 9389 2.494059 ACAGTACATGTTCACCACTGC 58.506 47.619 20.57 0.00 39.96 4.40
8415 9441 4.527509 TGGCTTCAAGTTTTGAACAACA 57.472 36.364 0.36 0.00 44.21 3.33
8451 9477 6.959639 TCTGCCATTTAGTGTTTTTCTTCT 57.040 33.333 0.00 0.00 0.00 2.85
8452 9478 7.346751 TCTGCCATTTAGTGTTTTTCTTCTT 57.653 32.000 0.00 0.00 0.00 2.52
8460 9486 8.996024 TTTAGTGTTTTTCTTCTTCTTTTGGG 57.004 30.769 0.00 0.00 0.00 4.12
8529 9555 9.692325 ATTATTACTTGAGAAGAGAAATTGGCT 57.308 29.630 0.00 0.00 0.00 4.75
8582 9731 6.206243 CCTTCTGATGTAAATGCATTAGAGGG 59.794 42.308 13.39 15.53 45.21 4.30
8723 9874 7.254455 CCAAGTTAGACGTATAGCCTTGATTTG 60.254 40.741 22.75 11.47 0.00 2.32
8726 9877 7.707035 AGTTAGACGTATAGCCTTGATTTGAAG 59.293 37.037 0.08 0.00 0.00 3.02
8727 9878 5.978814 AGACGTATAGCCTTGATTTGAAGT 58.021 37.500 0.00 0.00 0.00 3.01
8766 9927 2.375174 TCACCCACAAGCAAGGTAGAAT 59.625 45.455 0.00 0.00 30.98 2.40
8788 9949 1.602668 CCACAAGCGTCCATTTGGTTG 60.603 52.381 2.93 2.93 46.16 3.77
9016 14198 5.473846 AGGCATCATCAGCTAATGAAGAATG 59.526 40.000 2.98 0.00 42.53 2.67
9021 14203 5.826208 TCATCAGCTAATGAAGAATGCATGT 59.174 36.000 0.00 0.00 42.53 3.21
9207 14397 4.052518 GGTGCAGTGGCCAGGGAT 62.053 66.667 5.11 0.00 40.13 3.85
9267 14457 1.232621 ACGTAGGTGAAAAAGCCGGC 61.233 55.000 21.89 21.89 0.00 6.13
9268 14458 1.231958 CGTAGGTGAAAAAGCCGGCA 61.232 55.000 31.54 2.66 0.00 5.69
9387 14577 4.324991 GTCGCCCGGGTGGAACTT 62.325 66.667 33.14 0.00 37.49 2.66
9388 14578 4.323477 TCGCCCGGGTGGAACTTG 62.323 66.667 33.14 7.88 37.49 3.16
9389 14579 4.636435 CGCCCGGGTGGAACTTGT 62.636 66.667 27.22 0.00 37.49 3.16
9404 14594 2.111999 CTTGTTGGAGGACGCCCAGA 62.112 60.000 0.00 0.00 34.77 3.86
9405 14595 2.047179 GTTGGAGGACGCCCAGAC 60.047 66.667 0.00 0.00 34.77 3.51
9495 14685 4.477975 CAGGACGGCGGTCGAGAC 62.478 72.222 9.82 4.55 44.39 3.36
9508 14698 2.266055 GAGACCACGGCAAGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.038557 GACAACAGACAGGGGCTCTTTA 59.961 50.000 0.00 0.00 0.00 1.85
24 25 2.683933 GGAGCCCGGGAAGTCTGA 60.684 66.667 29.31 0.00 0.00 3.27
39 40 1.386533 GTCAATAGGTCGACCTCGGA 58.613 55.000 39.49 29.28 44.77 4.55
41 42 0.029035 CCGTCAATAGGTCGACCTCG 59.971 60.000 39.49 32.25 44.77 4.63
49 53 1.392710 CGAGAGGCCCGTCAATAGGT 61.393 60.000 0.00 0.00 0.00 3.08
80 85 0.754472 ACGGTGTAATGTATCGGGGG 59.246 55.000 0.00 0.00 0.00 5.40
84 89 4.031314 CAGTGTTGACGGTGTAATGTATCG 59.969 45.833 0.00 0.00 0.00 2.92
86 91 5.142061 TCAGTGTTGACGGTGTAATGTAT 57.858 39.130 0.00 0.00 0.00 2.29
103 108 0.524392 CTCGCTTAGTCGCCTCAGTG 60.524 60.000 0.00 0.00 0.00 3.66
104 109 1.658686 CCTCGCTTAGTCGCCTCAGT 61.659 60.000 0.00 0.00 0.00 3.41
105 110 1.064946 CCTCGCTTAGTCGCCTCAG 59.935 63.158 0.00 0.00 0.00 3.35
167 176 4.627058 ACAACACACATTCGTCATGTCTA 58.373 39.130 0.00 0.00 43.17 2.59
168 177 3.466836 ACAACACACATTCGTCATGTCT 58.533 40.909 0.00 0.00 43.17 3.41
173 182 3.625313 ACATGAACAACACACATTCGTCA 59.375 39.130 0.00 0.00 0.00 4.35
202 211 5.123979 ACAATAATTGCTCTTTCGTCCCTTC 59.876 40.000 0.00 0.00 0.00 3.46
212 221 6.678547 TGGGGGTATTACAATAATTGCTCTT 58.321 36.000 0.00 0.00 0.00 2.85
223 232 9.465199 GAAGTTAGTTTAATGGGGGTATTACAA 57.535 33.333 0.00 0.00 0.00 2.41
254 263 8.708742 CGTTAATCTGAGAAAATCACTGTACAA 58.291 33.333 0.00 0.00 33.22 2.41
261 270 6.590292 TCTGACCGTTAATCTGAGAAAATCAC 59.410 38.462 0.00 0.00 33.22 3.06
264 274 7.386851 TCTTCTGACCGTTAATCTGAGAAAAT 58.613 34.615 0.00 0.00 0.00 1.82
273 283 7.581476 TGTTGAAATTCTTCTGACCGTTAATC 58.419 34.615 0.00 0.00 32.33 1.75
281 291 9.439537 GTACTTTCTTGTTGAAATTCTTCTGAC 57.560 33.333 0.00 0.00 42.96 3.51
282 292 8.621286 GGTACTTTCTTGTTGAAATTCTTCTGA 58.379 33.333 0.00 0.00 42.96 3.27
298 308 5.455755 GGGTGGTACTTTCAGGTACTTTCTT 60.456 44.000 0.00 0.00 41.07 2.52
300 310 4.202388 TGGGTGGTACTTTCAGGTACTTTC 60.202 45.833 0.00 0.00 41.07 2.62
301 311 3.717913 TGGGTGGTACTTTCAGGTACTTT 59.282 43.478 0.00 0.00 41.07 2.66
302 312 3.320129 TGGGTGGTACTTTCAGGTACTT 58.680 45.455 0.00 0.00 41.07 2.24
303 313 2.980548 TGGGTGGTACTTTCAGGTACT 58.019 47.619 0.00 0.00 41.07 2.73
304 314 3.775261 TTGGGTGGTACTTTCAGGTAC 57.225 47.619 0.00 0.00 40.71 3.34
305 315 3.911260 TGATTGGGTGGTACTTTCAGGTA 59.089 43.478 0.00 0.00 0.00 3.08
306 316 2.714250 TGATTGGGTGGTACTTTCAGGT 59.286 45.455 0.00 0.00 0.00 4.00
307 317 3.081804 GTGATTGGGTGGTACTTTCAGG 58.918 50.000 0.00 0.00 0.00 3.86
308 318 3.081804 GGTGATTGGGTGGTACTTTCAG 58.918 50.000 0.00 0.00 0.00 3.02
309 319 2.714250 AGGTGATTGGGTGGTACTTTCA 59.286 45.455 0.00 0.00 0.00 2.69
330 340 5.186198 GGTTAATAAAGAGAGCTGCCTTGA 58.814 41.667 0.00 0.00 0.00 3.02
335 345 7.568199 TTATTGGGTTAATAAAGAGAGCTGC 57.432 36.000 0.00 0.00 38.08 5.25
394 443 9.034544 GTCAAAGTTTTCTGTCATTGCTTAAAT 57.965 29.630 0.00 0.00 0.00 1.40
421 470 3.597255 TCGGAGATCTACCTATAGTGCG 58.403 50.000 0.00 0.00 0.00 5.34
422 471 3.942748 CCTCGGAGATCTACCTATAGTGC 59.057 52.174 6.58 0.00 33.89 4.40
435 484 2.066999 GCCCAAGACCCTCGGAGAT 61.067 63.158 6.58 0.00 33.89 2.75
447 496 0.512952 CGAAGTCGTCTTTGCCCAAG 59.487 55.000 0.00 0.00 33.64 3.61
454 503 2.740452 GTCTGAACCGAAGTCGTCTTT 58.260 47.619 0.00 0.00 37.74 2.52
472 521 2.348591 CCTTTCGAAGCACTTTCACGTC 60.349 50.000 0.00 0.00 35.43 4.34
497 546 4.746115 GCATGTGTGGCCAAATATATGTTG 59.254 41.667 7.24 0.00 0.00 3.33
500 549 4.202131 TGTGCATGTGTGGCCAAATATATG 60.202 41.667 7.24 12.29 0.00 1.78
513 562 6.049955 AGTTAACTAGGTATGTGCATGTGT 57.950 37.500 6.26 0.00 0.00 3.72
607 923 5.448360 GGTGGTGTATACTTCGTCTCTGTAC 60.448 48.000 4.17 0.00 0.00 2.90
663 980 7.822822 TCAAAACCCCGATTTTTGAAGTTTTTA 59.177 29.630 13.20 0.00 45.52 1.52
664 981 6.655425 TCAAAACCCCGATTTTTGAAGTTTTT 59.345 30.769 13.20 0.00 45.52 1.94
696 1013 4.044571 TGGATTTTTGGATCCTGAGGTTCT 59.955 41.667 14.23 0.00 44.85 3.01
697 1014 4.158579 GTGGATTTTTGGATCCTGAGGTTC 59.841 45.833 14.23 0.00 44.85 3.62
700 1017 3.026694 GGTGGATTTTTGGATCCTGAGG 58.973 50.000 14.23 0.00 44.85 3.86
701 1018 3.700538 TGGTGGATTTTTGGATCCTGAG 58.299 45.455 14.23 0.00 44.85 3.35
702 1019 3.824001 TGGTGGATTTTTGGATCCTGA 57.176 42.857 14.23 0.00 44.85 3.86
703 1020 4.025360 TGATGGTGGATTTTTGGATCCTG 58.975 43.478 14.23 0.00 44.85 3.86
704 1021 4.026052 GTGATGGTGGATTTTTGGATCCT 58.974 43.478 14.23 0.00 44.85 3.24
774 1094 1.910580 TTCTGAGGGGGATTGACGGC 61.911 60.000 0.00 0.00 0.00 5.68
808 1135 5.220931 GGGTTGAATTCTTGATCTGATTCGG 60.221 44.000 7.05 0.00 0.00 4.30
967 1299 1.527380 GTTGGTTGGCTCCGTTCCA 60.527 57.895 0.00 0.00 0.00 3.53
976 1308 1.658114 GAAACGGAGGTTGGTTGGC 59.342 57.895 0.00 0.00 36.25 4.52
991 1323 4.958897 CGGGTTGGCACGGGGAAA 62.959 66.667 0.00 0.00 37.98 3.13
1344 1720 2.815647 CCGAGGAGTTGCTTCCGC 60.816 66.667 0.00 0.00 42.29 5.54
1489 1869 1.176619 TCTCGCAACGGAACAGAGGA 61.177 55.000 0.00 0.00 0.00 3.71
1521 1901 3.081133 CACGTGGAATCGAAGCCG 58.919 61.111 7.95 0.00 34.70 5.52
1678 2069 1.541588 GCACAAAACCTAGCCTCCAAG 59.458 52.381 0.00 0.00 0.00 3.61
1680 2071 0.771127 AGCACAAAACCTAGCCTCCA 59.229 50.000 0.00 0.00 0.00 3.86
1688 2079 0.944386 CTACACGCAGCACAAAACCT 59.056 50.000 0.00 0.00 0.00 3.50
1715 2107 1.516892 CAATTCACCCAATGCCCCG 59.483 57.895 0.00 0.00 0.00 5.73
1747 2140 4.260375 CCAGATCTTATCGAAAGGCAAACG 60.260 45.833 0.00 0.00 0.00 3.60
1853 2246 7.421530 TTGCTAGAAAATAATCATACTCGGC 57.578 36.000 0.00 0.00 0.00 5.54
1890 2283 2.832838 TCCTCTCCCAGATACAAAGCA 58.167 47.619 0.00 0.00 0.00 3.91
1960 2354 9.569122 AGTACTGGCACTATTTAGAAAGAAAAA 57.431 29.630 0.00 0.00 0.00 1.94
1969 2367 7.225538 CAGGAATGAAGTACTGGCACTATTTAG 59.774 40.741 0.00 0.00 0.00 1.85
2082 2480 5.731957 TCAGGCGTGCATATTATACCTTA 57.268 39.130 0.35 0.00 0.00 2.69
2112 2510 7.496920 CCATCAGTACCAGGCAATATATACATG 59.503 40.741 0.00 0.00 0.00 3.21
2119 2517 3.056080 ACCCATCAGTACCAGGCAATAT 58.944 45.455 0.00 0.00 0.00 1.28
2381 2787 1.667830 AACACGCAGACCCATCACG 60.668 57.895 0.00 0.00 34.02 4.35
2681 3087 8.693504 CCGTGCAAATAGATTAGCAAAATAATG 58.306 33.333 0.00 0.00 38.91 1.90
2723 3130 4.678287 CACAGCTGTTATCACAAAAGCAAG 59.322 41.667 18.94 0.00 30.36 4.01
2965 3382 5.358922 CATTCCCGGATGCAAATTGTTAAT 58.641 37.500 0.73 0.00 0.00 1.40
3019 3436 4.104831 AGTTCTGGGCAAGTCCTATAAGT 58.895 43.478 0.00 0.00 34.39 2.24
3062 3479 3.703052 AGGCATTTCTTCCAACATCATCC 59.297 43.478 0.00 0.00 0.00 3.51
3176 3593 5.636903 ATAACATCCAGCAACATAGAGGT 57.363 39.130 0.00 0.00 0.00 3.85
3854 4273 0.254462 TAAATGAGGCCCATCGCACA 59.746 50.000 0.00 0.00 40.31 4.57
3865 4284 9.353999 GGTTTTGCAGTTATTTACTAAATGAGG 57.646 33.333 4.52 0.00 37.55 3.86
3890 4309 1.002315 CAAGCCATGAAGTTTTGGGGG 59.998 52.381 0.00 0.00 33.40 5.40
3891 4310 1.969923 TCAAGCCATGAAGTTTTGGGG 59.030 47.619 0.00 0.00 34.30 4.96
3948 4367 1.039068 CCCATGCAACTTCAACACCA 58.961 50.000 0.00 0.00 0.00 4.17
4418 4852 4.374399 ACTTTTACACTGGACAAGTACGG 58.626 43.478 0.00 0.00 36.83 4.02
4421 4855 6.474140 TGAGACTTTTACACTGGACAAGTA 57.526 37.500 0.00 0.00 36.83 2.24
4422 4856 5.353394 TGAGACTTTTACACTGGACAAGT 57.647 39.130 0.00 0.00 40.93 3.16
4498 4932 4.821805 GGAGGACTGAAATGTTCAAACAGA 59.178 41.667 0.00 0.00 43.04 3.41
4598 5032 3.684103 TCAAAACTGTGCTTTGTACCG 57.316 42.857 5.22 0.00 35.65 4.02
4693 5130 2.941891 TTAGCGCAAGAAGTCAAACG 57.058 45.000 11.47 0.00 43.02 3.60
4786 5223 0.318445 GCTGGCTGCTGTCAAAAGTG 60.318 55.000 9.31 0.00 38.95 3.16
4891 5328 3.631250 TGCCCTTTCTTCCATGGATAAC 58.369 45.455 17.06 2.46 0.00 1.89
4983 5420 5.163581 GCAGAATCATTTATTGACACCAGCT 60.164 40.000 0.00 0.00 37.11 4.24
5114 5551 2.582436 GTCCTTCGGATCCGGCAA 59.418 61.111 32.79 19.88 40.25 4.52
5169 5606 2.478894 AGGTTGCAACGACTTGAATACG 59.521 45.455 22.67 0.00 0.00 3.06
5174 5611 1.013596 CACAGGTTGCAACGACTTGA 58.986 50.000 22.67 0.00 0.00 3.02
5189 5626 7.264373 AGAAATAAAAATAGCGGGATCACAG 57.736 36.000 0.00 0.00 0.00 3.66
5233 5670 6.425721 GTGTATTACAGCAACCACTTGAGTTA 59.574 38.462 0.00 0.00 0.00 2.24
5393 5830 7.544566 TCAGACATACCTAAGAACGATTGTTTC 59.455 37.037 0.00 0.00 38.78 2.78
5394 5831 7.383687 TCAGACATACCTAAGAACGATTGTTT 58.616 34.615 0.00 0.00 38.78 2.83
5406 5843 5.897250 TGGCAACTAGATCAGACATACCTAA 59.103 40.000 0.00 0.00 37.61 2.69
5438 5875 4.148348 GCACACTAGAACAAACTACACTCG 59.852 45.833 0.00 0.00 0.00 4.18
5440 5877 5.050490 CAGCACACTAGAACAAACTACACT 58.950 41.667 0.00 0.00 0.00 3.55
5470 5907 8.408043 AAAGTGGAGTGATCATACAAAATTGA 57.592 30.769 0.00 0.00 0.00 2.57
5523 5960 6.759497 AACAGCATAAGAAACCAGGAATAC 57.241 37.500 0.00 0.00 0.00 1.89
5563 6000 0.321564 TGGGATTCCAAGTCACAGCG 60.322 55.000 4.80 0.00 40.73 5.18
5566 6003 3.874383 TTTCTGGGATTCCAAGTCACA 57.126 42.857 6.99 0.00 43.51 3.58
5567 6004 4.593956 AGATTTCTGGGATTCCAAGTCAC 58.406 43.478 6.99 0.00 43.51 3.67
5575 6012 9.566432 AGTTATGATGTAAGATTTCTGGGATTC 57.434 33.333 0.00 0.00 0.00 2.52
5795 6236 6.148811 GGCAACAATACTGAGCTACAAAGTTA 59.851 38.462 0.00 0.00 0.00 2.24
5802 6243 4.212214 GCATAGGCAACAATACTGAGCTAC 59.788 45.833 0.00 0.00 40.72 3.58
5891 6332 9.533253 GAAATGGTTATTTAGCTGTGCATTTAT 57.467 29.630 0.00 0.00 36.66 1.40
6002 6443 8.510505 TCAGTCATCGAATGAACTATGATAGAG 58.489 37.037 6.45 0.00 41.69 2.43
6052 6732 7.770897 AGCCTAAACAGAAGAGTTGTTATATGG 59.229 37.037 0.00 0.00 37.77 2.74
6055 6735 7.903145 TCAGCCTAAACAGAAGAGTTGTTATA 58.097 34.615 0.00 0.00 37.77 0.98
6448 7129 1.142185 CCAGACGCTGATGCTACACG 61.142 60.000 8.20 0.00 36.97 4.49
6522 7203 8.372521 CAACTATTTTGAACAAGTGTGTGTTTC 58.627 33.333 0.00 0.00 41.78 2.78
6528 7209 6.884096 TTGCAACTATTTTGAACAAGTGTG 57.116 33.333 0.00 0.00 0.00 3.82
6552 7233 6.538742 CCCTTTAGACATCTTTTGAGCGAATA 59.461 38.462 0.00 0.00 0.00 1.75
6572 7253 1.222936 CCTGCTCGAGATGCCCTTT 59.777 57.895 18.75 0.00 0.00 3.11
6667 7348 1.119684 GTTTCCCCAACAGGCAAAGT 58.880 50.000 0.00 0.00 35.18 2.66
6716 7397 6.094048 CCAAATCCAATACAGTGATTCGACTT 59.906 38.462 0.00 0.00 0.00 3.01
6735 7416 3.853671 CGTAGTGTACACGTACCCAAATC 59.146 47.826 19.93 2.62 35.26 2.17
6736 7417 3.367292 CCGTAGTGTACACGTACCCAAAT 60.367 47.826 19.93 2.23 37.71 2.32
6737 7418 2.030363 CCGTAGTGTACACGTACCCAAA 60.030 50.000 19.93 0.00 37.71 3.28
6738 7419 1.539388 CCGTAGTGTACACGTACCCAA 59.461 52.381 19.93 0.00 37.71 4.12
6739 7420 1.164411 CCGTAGTGTACACGTACCCA 58.836 55.000 19.93 0.44 37.71 4.51
6740 7421 1.448985 TCCGTAGTGTACACGTACCC 58.551 55.000 19.93 6.82 37.71 3.69
6741 7422 3.375299 AGAATCCGTAGTGTACACGTACC 59.625 47.826 19.93 8.46 37.71 3.34
6742 7423 4.093408 TCAGAATCCGTAGTGTACACGTAC 59.907 45.833 19.93 18.87 37.71 3.67
6743 7424 4.252878 TCAGAATCCGTAGTGTACACGTA 58.747 43.478 19.93 10.16 37.71 3.57
6744 7425 3.076621 TCAGAATCCGTAGTGTACACGT 58.923 45.455 19.93 11.11 37.71 4.49
6745 7426 3.373130 TCTCAGAATCCGTAGTGTACACG 59.627 47.826 19.93 8.79 39.10 4.49
6746 7427 4.201930 CCTCTCAGAATCCGTAGTGTACAC 60.202 50.000 18.56 18.56 0.00 2.90
6747 7428 3.945921 CCTCTCAGAATCCGTAGTGTACA 59.054 47.826 0.00 0.00 0.00 2.90
6748 7429 4.197750 TCCTCTCAGAATCCGTAGTGTAC 58.802 47.826 0.00 0.00 0.00 2.90
6749 7430 4.498894 TCCTCTCAGAATCCGTAGTGTA 57.501 45.455 0.00 0.00 0.00 2.90
6750 7431 3.367646 TCCTCTCAGAATCCGTAGTGT 57.632 47.619 0.00 0.00 0.00 3.55
6751 7432 4.158764 ACTTTCCTCTCAGAATCCGTAGTG 59.841 45.833 0.00 0.00 0.00 2.74
6752 7433 4.158764 CACTTTCCTCTCAGAATCCGTAGT 59.841 45.833 0.00 0.00 0.00 2.73
6753 7434 4.399618 TCACTTTCCTCTCAGAATCCGTAG 59.600 45.833 0.00 0.00 0.00 3.51
6754 7435 4.158025 GTCACTTTCCTCTCAGAATCCGTA 59.842 45.833 0.00 0.00 0.00 4.02
6755 7436 3.056465 GTCACTTTCCTCTCAGAATCCGT 60.056 47.826 0.00 0.00 0.00 4.69
6756 7437 3.516615 GTCACTTTCCTCTCAGAATCCG 58.483 50.000 0.00 0.00 0.00 4.18
6757 7438 3.261897 TGGTCACTTTCCTCTCAGAATCC 59.738 47.826 0.00 0.00 0.00 3.01
6758 7439 4.543590 TGGTCACTTTCCTCTCAGAATC 57.456 45.455 0.00 0.00 0.00 2.52
6759 7440 4.533707 TCATGGTCACTTTCCTCTCAGAAT 59.466 41.667 0.00 0.00 0.00 2.40
6760 7441 3.903714 TCATGGTCACTTTCCTCTCAGAA 59.096 43.478 0.00 0.00 0.00 3.02
6761 7442 3.510459 TCATGGTCACTTTCCTCTCAGA 58.490 45.455 0.00 0.00 0.00 3.27
6762 7443 3.969287 TCATGGTCACTTTCCTCTCAG 57.031 47.619 0.00 0.00 0.00 3.35
6763 7444 3.054875 CCATCATGGTCACTTTCCTCTCA 60.055 47.826 0.00 0.00 31.35 3.27
6764 7445 3.539604 CCATCATGGTCACTTTCCTCTC 58.460 50.000 0.00 0.00 31.35 3.20
6765 7446 2.356535 GCCATCATGGTCACTTTCCTCT 60.357 50.000 5.31 0.00 40.46 3.69
6766 7447 2.019984 GCCATCATGGTCACTTTCCTC 58.980 52.381 5.31 0.00 40.46 3.71
6767 7448 1.637553 AGCCATCATGGTCACTTTCCT 59.362 47.619 5.31 0.00 40.46 3.36
6768 7449 2.019984 GAGCCATCATGGTCACTTTCC 58.980 52.381 5.31 0.00 40.46 3.13
6769 7450 2.681848 CTGAGCCATCATGGTCACTTTC 59.318 50.000 5.31 0.00 40.46 2.62
6770 7451 2.619849 CCTGAGCCATCATGGTCACTTT 60.620 50.000 5.31 0.00 40.46 2.66
6771 7452 1.064906 CCTGAGCCATCATGGTCACTT 60.065 52.381 5.31 0.00 40.46 3.16
6772 7453 0.545171 CCTGAGCCATCATGGTCACT 59.455 55.000 5.31 0.00 40.46 3.41
6773 7454 1.099879 GCCTGAGCCATCATGGTCAC 61.100 60.000 5.31 0.00 40.46 3.67
6774 7455 1.225426 GCCTGAGCCATCATGGTCA 59.775 57.895 5.31 7.12 40.46 4.02
6775 7456 0.178998 ATGCCTGAGCCATCATGGTC 60.179 55.000 5.31 2.49 40.46 4.02
6776 7457 1.142936 TATGCCTGAGCCATCATGGT 58.857 50.000 5.31 0.00 40.46 3.55
6777 7458 1.202842 TGTATGCCTGAGCCATCATGG 60.203 52.381 0.00 0.00 41.55 3.66
6817 7499 2.224992 TGTGTGACCTGGGCAATACATT 60.225 45.455 14.85 0.00 0.00 2.71
6819 7501 0.767998 TGTGTGACCTGGGCAATACA 59.232 50.000 14.85 14.85 0.00 2.29
6820 7502 2.128771 ATGTGTGACCTGGGCAATAC 57.871 50.000 2.31 7.59 0.00 1.89
6932 7616 8.696374 AGACTGGAGTTCGATTCTTCATTAATA 58.304 33.333 0.56 0.00 0.00 0.98
6938 7622 4.082845 AGAGACTGGAGTTCGATTCTTCA 58.917 43.478 0.00 0.00 0.00 3.02
6939 7623 4.712122 AGAGACTGGAGTTCGATTCTTC 57.288 45.455 0.00 0.00 0.00 2.87
6940 7624 4.770010 AGAAGAGACTGGAGTTCGATTCTT 59.230 41.667 0.00 0.00 0.00 2.52
6962 7646 9.330063 TCTGACTGGTAGCAAAATAATATGAAG 57.670 33.333 0.00 0.00 0.00 3.02
6963 7647 9.679661 TTCTGACTGGTAGCAAAATAATATGAA 57.320 29.630 0.00 0.00 0.00 2.57
7075 7921 3.173151 TCCTCATACTTCTCCTGCACAA 58.827 45.455 0.00 0.00 0.00 3.33
7115 7961 3.777106 ACAGCTCTGTTCTCCATTTGA 57.223 42.857 0.00 0.00 41.83 2.69
7238 8144 3.057806 GCCGCTTGGTACTACAAACATTT 60.058 43.478 0.00 0.00 34.16 2.32
7264 8170 3.147553 TGTGTTGCCAGGTATAAGCAA 57.852 42.857 0.00 0.00 43.83 3.91
7341 8247 5.304871 AGGAGCCTTAAATAGTACTAGCACC 59.695 44.000 14.28 14.28 0.00 5.01
7346 8252 8.365647 GCACATTAGGAGCCTTAAATAGTACTA 58.634 37.037 4.77 4.77 0.00 1.82
7347 8253 7.147549 TGCACATTAGGAGCCTTAAATAGTACT 60.148 37.037 0.00 0.00 0.00 2.73
7348 8254 6.990349 TGCACATTAGGAGCCTTAAATAGTAC 59.010 38.462 0.00 0.00 0.00 2.73
7437 8457 7.765307 AGTATTATTGCCTTTTGATGTCACTG 58.235 34.615 0.00 0.00 0.00 3.66
7457 8477 2.717639 CCAGTGGCTGGCTTAGTATT 57.282 50.000 0.00 0.00 45.13 1.89
7490 8510 4.025401 CAACGCGCCAGAACCACC 62.025 66.667 5.73 0.00 0.00 4.61
7493 8513 3.660111 AAGCAACGCGCCAGAACC 61.660 61.111 5.73 0.00 44.04 3.62
7502 8522 1.718757 CCTAGGGATGCAAGCAACGC 61.719 60.000 10.63 10.63 33.17 4.84
7505 8525 0.698238 ACACCTAGGGATGCAAGCAA 59.302 50.000 14.81 0.00 0.00 3.91
7596 8616 9.507280 CAAATATCAACATTGGAACACTATGAC 57.493 33.333 0.00 0.00 39.29 3.06
7618 8638 5.835280 CAGGGGAATAACAAGCCTATCAAAT 59.165 40.000 0.00 0.00 0.00 2.32
7677 8697 8.423906 AGTAAGTTTATTCTTCTGGACTGAGA 57.576 34.615 0.00 0.00 0.00 3.27
7709 8729 1.576421 CCGCCAGCTCAGTGAAAAC 59.424 57.895 0.00 0.00 0.00 2.43
7721 8741 1.065418 ACCTTGTTCTTATCCCGCCAG 60.065 52.381 0.00 0.00 0.00 4.85
7748 8768 2.865670 GCGCCTCATCTATTGGTCAGAG 60.866 54.545 0.00 0.00 0.00 3.35
7896 8922 8.512956 AGATGATAGAATTTAATGCTGACATGC 58.487 33.333 9.93 0.00 36.36 4.06
7909 8935 9.171877 GGTTCAGAACTTGAGATGATAGAATTT 57.828 33.333 13.13 0.00 37.07 1.82
8066 9092 4.339247 TGTTCTGCTTTCCCTGAAAAGAAG 59.661 41.667 0.75 0.00 41.52 2.85
8082 9108 2.159599 GCAGTCACTAGCATTGTTCTGC 60.160 50.000 12.02 12.02 42.62 4.26
8128 9154 2.094854 GTGCTTCTTCCCTTTGCTCATG 60.095 50.000 0.00 0.00 0.00 3.07
8133 9159 0.827507 TGGGTGCTTCTTCCCTTTGC 60.828 55.000 0.00 0.00 43.74 3.68
8136 9162 1.075659 GCTGGGTGCTTCTTCCCTT 59.924 57.895 0.00 0.00 43.74 3.95
8147 9173 4.347360 TTCTCATCATCTATGCTGGGTG 57.653 45.455 0.00 0.00 35.38 4.61
8151 9177 5.995897 TCCATGTTTCTCATCATCTATGCTG 59.004 40.000 0.00 0.00 35.38 4.41
8153 9179 6.228995 TCTCCATGTTTCTCATCATCTATGC 58.771 40.000 0.00 0.00 35.38 3.14
8154 9180 8.557864 GTTTCTCCATGTTTCTCATCATCTATG 58.442 37.037 0.00 0.00 34.09 2.23
8190 9216 4.487714 TTCTACTGTCCATTCACCATCC 57.512 45.455 0.00 0.00 0.00 3.51
8219 9245 1.339151 ACTCCGCCTTGTCATTTCCTC 60.339 52.381 0.00 0.00 0.00 3.71
8363 9389 2.069273 CCTCAGCAAGAACTTACACCG 58.931 52.381 0.00 0.00 0.00 4.94
8427 9453 7.530426 AGAAGAAAAACACTAAATGGCAGAT 57.470 32.000 0.00 0.00 0.00 2.90
8440 9466 6.998802 TGAACCCAAAAGAAGAAGAAAAACA 58.001 32.000 0.00 0.00 0.00 2.83
8451 9477 3.254657 CAGCGGTAATGAACCCAAAAGAA 59.745 43.478 0.00 0.00 46.62 2.52
8452 9478 2.817258 CAGCGGTAATGAACCCAAAAGA 59.183 45.455 0.00 0.00 46.62 2.52
8460 9486 3.744426 ACAACTACACAGCGGTAATGAAC 59.256 43.478 5.16 0.00 0.00 3.18
8582 9731 4.651994 CAGATTGTCCATTTGCTACGTTC 58.348 43.478 0.00 0.00 0.00 3.95
8650 9801 5.720202 ACTATAGTTTGACAACGAGCATGA 58.280 37.500 0.00 0.00 38.03 3.07
8723 9874 3.529533 ACAGCACAGCAGATCATACTTC 58.470 45.455 0.00 0.00 0.00 3.01
8726 9877 3.063180 GTGAACAGCACAGCAGATCATAC 59.937 47.826 0.00 0.00 46.91 2.39
8727 9878 3.264947 GTGAACAGCACAGCAGATCATA 58.735 45.455 0.00 0.00 46.91 2.15
8766 9927 1.659233 CAAATGGACGCTTGTGGCA 59.341 52.632 0.00 0.00 41.91 4.92
8788 9949 4.016444 TCAAATTGGTTGCTATCTCACCC 58.984 43.478 0.00 0.00 37.13 4.61
8941 14121 3.370633 GCCTGTAGGTTTCCCTCCTAAAG 60.371 52.174 0.00 0.00 41.45 1.85
8944 14124 1.365028 AGCCTGTAGGTTTCCCTCCTA 59.635 52.381 0.00 0.00 41.45 2.94
8945 14125 0.119358 AGCCTGTAGGTTTCCCTCCT 59.881 55.000 0.00 0.00 41.45 3.69
8946 14126 1.485480 GTAGCCTGTAGGTTTCCCTCC 59.515 57.143 0.00 0.00 41.45 4.30
8947 14127 2.168728 CTGTAGCCTGTAGGTTTCCCTC 59.831 54.545 0.00 0.00 41.45 4.30
8948 14128 2.188817 CTGTAGCCTGTAGGTTTCCCT 58.811 52.381 0.00 0.00 45.51 4.20
9016 14198 4.498682 GGTCTCATGGCTTGAAATACATGC 60.499 45.833 4.53 0.00 45.15 4.06
9021 14203 2.917933 CCGGTCTCATGGCTTGAAATA 58.082 47.619 4.53 0.00 32.78 1.40
9049 14231 1.065709 GGATTTGGCCTTGTCGTCCTA 60.066 52.381 3.32 0.00 0.00 2.94
9130 14320 2.606519 CCAGGTTCCCCCTCGTCA 60.607 66.667 0.00 0.00 43.86 4.35
9207 14397 1.754803 CCCGCTACTTCATCTGTGGTA 59.245 52.381 0.00 0.00 0.00 3.25
9211 14401 0.108138 GCACCCGCTACTTCATCTGT 60.108 55.000 0.00 0.00 34.30 3.41
9241 14431 0.037975 TTTTCACCTACGTCGCCCTC 60.038 55.000 0.00 0.00 0.00 4.30
9268 14458 3.180282 CCCATCACCACCTTGGGT 58.820 61.111 0.00 0.00 44.30 4.51
9387 14577 2.525629 TCTGGGCGTCCTCCAACA 60.526 61.111 7.97 0.00 33.36 3.33
9388 14578 2.047179 GTCTGGGCGTCCTCCAAC 60.047 66.667 7.97 0.00 33.36 3.77
9389 14579 3.691342 CGTCTGGGCGTCCTCCAA 61.691 66.667 7.97 0.00 33.36 3.53
9489 14679 2.599281 TCCTTGCCGTGGTCTCGA 60.599 61.111 0.00 0.00 0.00 4.04
9508 14698 1.226660 CGCCATGAAAACCATCGCC 60.227 57.895 0.00 0.00 36.23 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.