Multiple sequence alignment - TraesCS1D01G288300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G288300 chr1D 100.000 2633 0 0 1 2633 386815355 386812723 0.000000e+00 4863
1 TraesCS1D01G288300 chr1D 89.754 244 20 3 1223 1466 386944240 386944002 9.150000e-80 307
2 TraesCS1D01G288300 chr1D 84.524 252 26 11 1156 1396 386941325 386941076 1.220000e-58 237
3 TraesCS1D01G288300 chr1A 86.376 1424 101 47 429 1790 486664263 486662871 0.000000e+00 1469
4 TraesCS1D01G288300 chr1A 96.721 183 6 0 1938 2120 486662714 486662532 3.290000e-79 305
5 TraesCS1D01G288300 chr1A 78.935 413 59 19 1068 1454 486744013 486743603 3.360000e-64 255
6 TraesCS1D01G288300 chr1A 91.875 160 13 0 1304 1463 486746970 486746811 9.480000e-55 224
7 TraesCS1D01G288300 chr1A 90.351 114 10 1 1824 1936 486662869 486662756 5.870000e-32 148
8 TraesCS1D01G288300 chr1A 93.814 97 5 1 335 430 380965107 380965011 7.600000e-31 145
9 TraesCS1D01G288300 chr1A 91.262 103 8 1 333 434 77163685 77163583 3.530000e-29 139
10 TraesCS1D01G288300 chr1B 88.448 580 27 17 1248 1805 520306956 520307517 0.000000e+00 664
11 TraesCS1D01G288300 chr1B 90.882 340 21 3 1791 2120 520343846 520344185 5.170000e-122 448
12 TraesCS1D01G288300 chr1B 86.930 329 42 1 2292 2619 520344178 520344506 4.140000e-98 368
13 TraesCS1D01G288300 chr1B 87.460 311 30 3 429 736 520348322 520348018 1.500000e-92 350
14 TraesCS1D01G288300 chr1B 88.760 258 23 3 725 980 520297517 520297770 7.080000e-81 311
15 TraesCS1D01G288300 chr1B 82.303 356 47 15 1068 1410 520366661 520366309 7.130000e-76 294
16 TraesCS1D01G288300 chr1B 86.590 261 21 8 1223 1475 520368768 520368514 2.580000e-70 276
17 TraesCS1D01G288300 chr1B 83.333 294 28 9 1182 1454 520358370 520358077 4.350000e-63 252
18 TraesCS1D01G288300 chr1B 90.116 172 12 4 2121 2291 503808873 503808706 4.410000e-53 219
19 TraesCS1D01G288300 chr1B 84.914 232 14 11 1042 1252 520297779 520298010 5.710000e-52 215
20 TraesCS1D01G288300 chr1B 87.209 172 15 5 2121 2291 667972237 667972072 3.460000e-44 189
21 TraesCS1D01G288300 chr1B 77.816 293 36 16 57 338 520348593 520348319 1.260000e-33 154
22 TraesCS1D01G288300 chr7B 89.080 174 15 2 2119 2291 749286372 749286542 2.050000e-51 213
23 TraesCS1D01G288300 chr7B 86.628 172 15 7 2121 2291 6886094 6886258 1.610000e-42 183
24 TraesCS1D01G288300 chr7B 88.991 109 10 2 335 441 562993066 562993174 1.640000e-27 134
25 TraesCS1D01G288300 chr4A 89.017 173 15 2 2121 2292 669666631 669666462 7.380000e-51 211
26 TraesCS1D01G288300 chr3A 86.782 174 16 5 2121 2293 564327114 564326947 1.240000e-43 187
27 TraesCS1D01G288300 chr3A 86.628 172 16 5 2121 2291 9303414 9303249 1.610000e-42 183
28 TraesCS1D01G288300 chr7A 86.705 173 15 7 2121 2290 270961648 270961481 4.480000e-43 185
29 TraesCS1D01G288300 chr5A 86.286 175 17 5 2120 2293 513890020 513890188 1.610000e-42 183
30 TraesCS1D01G288300 chr5D 90.351 114 9 2 329 441 549469809 549469921 5.870000e-32 148
31 TraesCS1D01G288300 chr2D 92.233 103 7 1 329 430 389095032 389094930 7.600000e-31 145
32 TraesCS1D01G288300 chr5B 89.474 114 9 3 323 434 693583911 693583799 9.830000e-30 141
33 TraesCS1D01G288300 chr5B 89.091 110 9 3 334 441 51031110 51031218 1.640000e-27 134
34 TraesCS1D01G288300 chr6D 89.908 109 9 2 328 434 808198 808306 3.530000e-29 139
35 TraesCS1D01G288300 chr7D 91.176 102 7 2 334 434 51550637 51550737 1.270000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G288300 chr1D 386812723 386815355 2632 True 4863.000000 4863 100.000000 1 2633 1 chr1D.!!$R1 2632
1 TraesCS1D01G288300 chr1D 386941076 386944240 3164 True 272.000000 307 87.139000 1156 1466 2 chr1D.!!$R2 310
2 TraesCS1D01G288300 chr1A 486662532 486664263 1731 True 640.666667 1469 91.149333 429 2120 3 chr1A.!!$R3 1691
3 TraesCS1D01G288300 chr1A 486743603 486746970 3367 True 239.500000 255 85.405000 1068 1463 2 chr1A.!!$R4 395
4 TraesCS1D01G288300 chr1B 520306956 520307517 561 False 664.000000 664 88.448000 1248 1805 1 chr1B.!!$F1 557
5 TraesCS1D01G288300 chr1B 520343846 520344506 660 False 408.000000 448 88.906000 1791 2619 2 chr1B.!!$F3 828
6 TraesCS1D01G288300 chr1B 520366309 520368768 2459 True 285.000000 294 84.446500 1068 1475 2 chr1B.!!$R5 407
7 TraesCS1D01G288300 chr1B 520348018 520348593 575 True 252.000000 350 82.638000 57 736 2 chr1B.!!$R4 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 1013 0.03759 ACGACCAAAATGGGCTAGCA 59.962 50.0 18.24 0.0 45.79 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2237 5085 0.032813 ATGGCCCACCCTGAGATTTG 60.033 55.0 0.0 0.0 33.59 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.880047 CCACTATCCACTGTAAACGGA 57.120 47.619 0.00 0.00 0.00 4.69
21 22 4.402056 CCACTATCCACTGTAAACGGAT 57.598 45.455 3.29 3.29 42.27 4.18
22 23 4.369182 CCACTATCCACTGTAAACGGATC 58.631 47.826 1.08 0.00 40.12 3.36
23 24 4.142026 CCACTATCCACTGTAAACGGATCA 60.142 45.833 1.08 0.00 40.12 2.92
24 25 5.453339 CCACTATCCACTGTAAACGGATCAT 60.453 44.000 1.08 0.00 40.12 2.45
25 26 6.239204 CCACTATCCACTGTAAACGGATCATA 60.239 42.308 1.08 0.00 40.12 2.15
26 27 7.378966 CACTATCCACTGTAAACGGATCATAT 58.621 38.462 1.08 0.00 40.12 1.78
27 28 7.329471 CACTATCCACTGTAAACGGATCATATG 59.671 40.741 0.00 0.00 40.12 1.78
28 29 4.956085 TCCACTGTAAACGGATCATATGG 58.044 43.478 2.13 0.00 0.00 2.74
29 30 4.651962 TCCACTGTAAACGGATCATATGGA 59.348 41.667 2.13 0.00 0.00 3.41
30 31 5.129650 TCCACTGTAAACGGATCATATGGAA 59.870 40.000 2.13 0.00 29.74 3.53
31 32 5.997746 CCACTGTAAACGGATCATATGGAAT 59.002 40.000 2.13 0.00 0.00 3.01
32 33 6.486657 CCACTGTAAACGGATCATATGGAATT 59.513 38.462 2.13 0.00 0.00 2.17
33 34 7.659799 CCACTGTAAACGGATCATATGGAATTA 59.340 37.037 2.13 0.00 0.00 1.40
34 35 8.712363 CACTGTAAACGGATCATATGGAATTAG 58.288 37.037 2.13 0.00 0.00 1.73
35 36 7.387948 ACTGTAAACGGATCATATGGAATTAGC 59.612 37.037 2.13 0.00 0.00 3.09
36 37 7.450074 TGTAAACGGATCATATGGAATTAGCT 58.550 34.615 2.13 0.00 0.00 3.32
37 38 7.936847 TGTAAACGGATCATATGGAATTAGCTT 59.063 33.333 2.13 0.00 0.00 3.74
38 39 7.440523 AAACGGATCATATGGAATTAGCTTC 57.559 36.000 2.13 0.00 0.00 3.86
39 40 6.365970 ACGGATCATATGGAATTAGCTTCT 57.634 37.500 2.13 0.00 34.08 2.85
40 41 6.773638 ACGGATCATATGGAATTAGCTTCTT 58.226 36.000 2.13 0.00 34.08 2.52
41 42 7.227156 ACGGATCATATGGAATTAGCTTCTTT 58.773 34.615 2.13 0.00 34.08 2.52
42 43 7.721399 ACGGATCATATGGAATTAGCTTCTTTT 59.279 33.333 2.13 0.00 34.08 2.27
43 44 8.571336 CGGATCATATGGAATTAGCTTCTTTTT 58.429 33.333 2.13 0.00 34.08 1.94
44 45 9.905171 GGATCATATGGAATTAGCTTCTTTTTC 57.095 33.333 2.13 0.00 34.08 2.29
50 51 7.617041 TGGAATTAGCTTCTTTTTCTAGAGC 57.383 36.000 0.00 0.00 34.08 4.09
51 52 7.168219 TGGAATTAGCTTCTTTTTCTAGAGCA 58.832 34.615 0.00 0.00 34.08 4.26
52 53 7.119846 TGGAATTAGCTTCTTTTTCTAGAGCAC 59.880 37.037 0.00 0.00 34.08 4.40
53 54 7.119846 GGAATTAGCTTCTTTTTCTAGAGCACA 59.880 37.037 0.00 0.00 34.08 4.57
54 55 6.787085 TTAGCTTCTTTTTCTAGAGCACAC 57.213 37.500 0.00 0.00 0.00 3.82
55 56 4.068599 AGCTTCTTTTTCTAGAGCACACC 58.931 43.478 0.00 0.00 0.00 4.16
56 57 4.068599 GCTTCTTTTTCTAGAGCACACCT 58.931 43.478 0.00 0.00 0.00 4.00
57 58 4.517075 GCTTCTTTTTCTAGAGCACACCTT 59.483 41.667 0.00 0.00 0.00 3.50
58 59 5.561725 GCTTCTTTTTCTAGAGCACACCTTG 60.562 44.000 0.00 0.00 0.00 3.61
68 69 2.387309 CACACCTTGCTAGGCGATG 58.613 57.895 14.60 7.86 46.22 3.84
87 88 5.265407 GATGTTTCGACTGAACTGGTAAC 57.735 43.478 0.60 0.00 32.71 2.50
131 132 7.218145 CGTTCAGTACGCAAAGATATTAAGT 57.782 36.000 0.00 0.00 44.26 2.24
146 147 7.668492 AGATATTAAGTAATGTTCTCGGGTCC 58.332 38.462 0.00 0.00 0.00 4.46
154 155 0.178984 GTTCTCGGGTCCCCCAAAAA 60.179 55.000 1.00 0.00 45.83 1.94
177 183 7.787623 AAAGGAATTTTCTCATGTTCTCCAT 57.212 32.000 0.00 0.00 0.00 3.41
192 198 9.512435 CATGTTCTCCATATTGACAAAATTCTC 57.488 33.333 0.00 0.00 30.71 2.87
193 199 8.868522 TGTTCTCCATATTGACAAAATTCTCT 57.131 30.769 0.00 0.00 0.00 3.10
194 200 8.950210 TGTTCTCCATATTGACAAAATTCTCTC 58.050 33.333 0.00 0.00 0.00 3.20
195 201 9.171877 GTTCTCCATATTGACAAAATTCTCTCT 57.828 33.333 0.00 0.00 0.00 3.10
196 202 9.745018 TTCTCCATATTGACAAAATTCTCTCTT 57.255 29.630 0.00 0.00 0.00 2.85
211 217 9.883142 AAATTCTCTCTTATTTCAGAGATTCGT 57.117 29.630 0.93 0.00 46.69 3.85
212 218 8.870160 ATTCTCTCTTATTTCAGAGATTCGTG 57.130 34.615 0.93 0.00 46.69 4.35
213 219 7.397892 TCTCTCTTATTTCAGAGATTCGTGT 57.602 36.000 0.93 0.00 46.69 4.49
214 220 7.831753 TCTCTCTTATTTCAGAGATTCGTGTT 58.168 34.615 0.93 0.00 46.69 3.32
215 221 8.957466 TCTCTCTTATTTCAGAGATTCGTGTTA 58.043 33.333 0.93 0.00 46.69 2.41
227 233 9.175060 CAGAGATTCGTGTTATGATACACTTAG 57.825 37.037 0.00 0.00 44.85 2.18
228 234 9.121658 AGAGATTCGTGTTATGATACACTTAGA 57.878 33.333 0.00 0.00 44.85 2.10
270 299 8.867112 AAGTGTATCATAATATTTCGTCGTGT 57.133 30.769 0.00 0.00 0.00 4.49
274 303 8.351461 TGTATCATAATATTTCGTCGTGTACCA 58.649 33.333 0.00 0.00 0.00 3.25
276 305 8.651391 ATCATAATATTTCGTCGTGTACCAAA 57.349 30.769 0.00 0.00 0.00 3.28
277 306 7.897920 TCATAATATTTCGTCGTGTACCAAAC 58.102 34.615 0.00 0.00 0.00 2.93
278 307 7.544915 TCATAATATTTCGTCGTGTACCAAACA 59.455 33.333 0.00 0.00 35.06 2.83
279 308 6.542574 AATATTTCGTCGTGTACCAAACAA 57.457 33.333 0.00 0.00 40.63 2.83
280 309 4.879104 ATTTCGTCGTGTACCAAACAAA 57.121 36.364 0.00 0.00 40.63 2.83
281 310 4.675190 TTTCGTCGTGTACCAAACAAAA 57.325 36.364 0.00 0.00 40.63 2.44
282 311 3.654952 TCGTCGTGTACCAAACAAAAC 57.345 42.857 0.00 0.00 40.63 2.43
283 312 2.998670 TCGTCGTGTACCAAACAAAACA 59.001 40.909 0.00 0.00 40.63 2.83
284 313 3.622163 TCGTCGTGTACCAAACAAAACAT 59.378 39.130 0.00 0.00 40.63 2.71
285 314 4.094590 TCGTCGTGTACCAAACAAAACATT 59.905 37.500 0.00 0.00 40.63 2.71
286 315 5.292834 TCGTCGTGTACCAAACAAAACATTA 59.707 36.000 0.00 0.00 40.63 1.90
287 316 5.393163 CGTCGTGTACCAAACAAAACATTAC 59.607 40.000 0.00 0.00 40.63 1.89
338 367 9.730420 AAAATGGCGAAACATTATGTAATACTC 57.270 29.630 0.00 0.00 40.01 2.59
339 368 6.854496 TGGCGAAACATTATGTAATACTCC 57.146 37.500 0.00 0.00 0.00 3.85
340 369 5.761234 TGGCGAAACATTATGTAATACTCCC 59.239 40.000 0.00 0.00 0.00 4.30
341 370 5.995897 GGCGAAACATTATGTAATACTCCCT 59.004 40.000 0.00 0.00 0.00 4.20
342 371 6.147328 GGCGAAACATTATGTAATACTCCCTC 59.853 42.308 0.00 0.00 0.00 4.30
343 372 6.147328 GCGAAACATTATGTAATACTCCCTCC 59.853 42.308 0.00 0.00 0.00 4.30
344 373 6.365247 CGAAACATTATGTAATACTCCCTCCG 59.635 42.308 0.00 0.00 0.00 4.63
345 374 6.742559 AACATTATGTAATACTCCCTCCGT 57.257 37.500 0.00 0.00 0.00 4.69
346 375 6.342338 ACATTATGTAATACTCCCTCCGTC 57.658 41.667 0.00 0.00 0.00 4.79
347 376 5.245526 ACATTATGTAATACTCCCTCCGTCC 59.754 44.000 0.00 0.00 0.00 4.79
348 377 2.832643 TGTAATACTCCCTCCGTCCA 57.167 50.000 0.00 0.00 0.00 4.02
349 378 3.104519 TGTAATACTCCCTCCGTCCAA 57.895 47.619 0.00 0.00 0.00 3.53
350 379 2.762327 TGTAATACTCCCTCCGTCCAAC 59.238 50.000 0.00 0.00 0.00 3.77
351 380 1.946984 AATACTCCCTCCGTCCAACA 58.053 50.000 0.00 0.00 0.00 3.33
352 381 2.176247 ATACTCCCTCCGTCCAACAT 57.824 50.000 0.00 0.00 0.00 2.71
353 382 2.832643 TACTCCCTCCGTCCAACATA 57.167 50.000 0.00 0.00 0.00 2.29
354 383 1.946984 ACTCCCTCCGTCCAACATAA 58.053 50.000 0.00 0.00 0.00 1.90
355 384 1.831736 ACTCCCTCCGTCCAACATAAG 59.168 52.381 0.00 0.00 0.00 1.73
356 385 1.831736 CTCCCTCCGTCCAACATAAGT 59.168 52.381 0.00 0.00 0.00 2.24
357 386 1.553248 TCCCTCCGTCCAACATAAGTG 59.447 52.381 0.00 0.00 0.00 3.16
358 387 1.278127 CCCTCCGTCCAACATAAGTGT 59.722 52.381 0.00 0.00 41.28 3.55
359 388 2.618053 CCTCCGTCCAACATAAGTGTC 58.382 52.381 0.00 0.00 37.67 3.67
360 389 2.233922 CCTCCGTCCAACATAAGTGTCT 59.766 50.000 0.00 0.00 37.67 3.41
361 390 3.306780 CCTCCGTCCAACATAAGTGTCTT 60.307 47.826 0.00 0.00 37.67 3.01
362 391 4.081862 CCTCCGTCCAACATAAGTGTCTTA 60.082 45.833 0.00 0.00 37.67 2.10
363 392 5.471556 TCCGTCCAACATAAGTGTCTTAA 57.528 39.130 0.00 0.00 37.67 1.85
364 393 6.045072 TCCGTCCAACATAAGTGTCTTAAT 57.955 37.500 0.00 0.00 37.67 1.40
365 394 6.469410 TCCGTCCAACATAAGTGTCTTAATT 58.531 36.000 0.00 0.00 37.67 1.40
366 395 6.938030 TCCGTCCAACATAAGTGTCTTAATTT 59.062 34.615 0.00 0.00 37.67 1.82
367 396 7.446013 TCCGTCCAACATAAGTGTCTTAATTTT 59.554 33.333 0.00 0.00 37.67 1.82
368 397 8.723311 CCGTCCAACATAAGTGTCTTAATTTTA 58.277 33.333 0.00 0.00 37.67 1.52
369 398 9.755064 CGTCCAACATAAGTGTCTTAATTTTAG 57.245 33.333 0.00 0.00 37.67 1.85
419 448 9.758651 ACAAAATTAAGACACTTATTTTGGGAC 57.241 29.630 22.91 0.00 40.94 4.46
420 449 8.911662 CAAAATTAAGACACTTATTTTGGGACG 58.088 33.333 18.04 0.00 36.15 4.79
421 450 6.753107 ATTAAGACACTTATTTTGGGACGG 57.247 37.500 0.00 0.00 0.00 4.79
422 451 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
423 452 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
424 453 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
425 454 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
426 455 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
427 456 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
435 464 1.144503 GGGACGGAGGGAGTACTATGA 59.855 57.143 0.00 0.00 0.00 2.15
446 475 7.074653 AGGGAGTACTATGAAACAAGACAAA 57.925 36.000 0.00 0.00 0.00 2.83
488 518 4.194640 ACATAGCACGAATCTCAAAGCAT 58.805 39.130 0.00 0.00 0.00 3.79
497 528 4.377328 CGAATCTCAAAGCATGACAAACGA 60.377 41.667 0.00 0.00 33.47 3.85
535 566 3.819564 TGTCCGATGGATGGTAGAAAG 57.180 47.619 0.00 0.00 32.73 2.62
539 570 4.039245 GTCCGATGGATGGTAGAAAGATCA 59.961 45.833 0.00 0.00 32.73 2.92
543 574 4.655762 TGGATGGTAGAAAGATCACTCG 57.344 45.455 0.00 0.00 0.00 4.18
544 575 4.023980 TGGATGGTAGAAAGATCACTCGT 58.976 43.478 0.00 0.00 0.00 4.18
552 583 3.743396 AGAAAGATCACTCGTGCAACTTC 59.257 43.478 0.00 0.00 31.75 3.01
558 589 0.464036 ACTCGTGCAACTTCTCCACA 59.536 50.000 0.00 0.00 31.75 4.17
576 607 1.352352 ACAAGTGAAGCAGCTGGGTAT 59.648 47.619 17.12 0.00 0.00 2.73
577 608 1.741706 CAAGTGAAGCAGCTGGGTATG 59.258 52.381 17.12 0.00 0.00 2.39
578 609 0.254178 AGTGAAGCAGCTGGGTATGG 59.746 55.000 17.12 0.00 0.00 2.74
579 610 0.749454 GTGAAGCAGCTGGGTATGGG 60.749 60.000 17.12 0.00 0.00 4.00
580 611 1.207488 TGAAGCAGCTGGGTATGGGT 61.207 55.000 17.12 0.00 0.00 4.51
581 612 0.837272 GAAGCAGCTGGGTATGGGTA 59.163 55.000 17.12 0.00 0.00 3.69
646 677 7.004086 TGGTTAACAGAAGAAACTCCATGAAT 58.996 34.615 8.10 0.00 0.00 2.57
723 756 1.281419 TCACCCCTATTTCTTCCGCA 58.719 50.000 0.00 0.00 0.00 5.69
754 787 3.084786 GGGCTTCAACTGAAATGCTAGT 58.915 45.455 4.34 0.00 33.07 2.57
822 857 2.760092 GAGAGGTGTGCTCTCAAGATCT 59.240 50.000 0.00 0.00 44.81 2.75
832 867 9.973450 GTGTGCTCTCAAGATCTATAGAAATAA 57.027 33.333 6.52 0.00 0.00 1.40
836 871 7.274686 GCTCTCAAGATCTATAGAAATAACCGC 59.725 40.741 6.52 0.87 0.00 5.68
870 905 2.023673 TGTTTTGGCCTCTTGAGTGTG 58.976 47.619 3.32 0.00 0.00 3.82
871 906 2.297701 GTTTTGGCCTCTTGAGTGTGA 58.702 47.619 3.32 0.00 0.00 3.58
872 907 2.687935 GTTTTGGCCTCTTGAGTGTGAA 59.312 45.455 3.32 0.00 0.00 3.18
873 908 2.727123 TTGGCCTCTTGAGTGTGAAA 57.273 45.000 3.32 0.00 0.00 2.69
893 928 2.479566 TGAAATGAGAGGTGTGCTCC 57.520 50.000 0.00 0.00 0.00 4.70
894 929 1.699083 TGAAATGAGAGGTGTGCTCCA 59.301 47.619 0.00 0.00 0.00 3.86
900 935 2.106338 TGAGAGGTGTGCTCCAAAATCA 59.894 45.455 0.00 0.00 0.00 2.57
901 936 2.485814 GAGAGGTGTGCTCCAAAATCAC 59.514 50.000 0.00 0.00 0.00 3.06
902 937 2.158623 AGAGGTGTGCTCCAAAATCACA 60.159 45.455 0.00 0.00 38.27 3.58
903 938 2.821969 GAGGTGTGCTCCAAAATCACAT 59.178 45.455 0.00 0.00 41.91 3.21
905 940 3.758554 AGGTGTGCTCCAAAATCACATAC 59.241 43.478 0.00 0.00 41.91 2.39
942 979 4.031028 GCAACGCTGTATTTTGCTCTATG 58.969 43.478 0.00 0.00 41.98 2.23
948 985 5.501413 CGCTGTATTTTGCTCTATGTCACTG 60.501 44.000 0.00 0.00 0.00 3.66
949 986 5.728898 GCTGTATTTTGCTCTATGTCACTGC 60.729 44.000 0.00 0.00 0.00 4.40
971 1008 4.089105 TGGACGACCAAAATGGGC 57.911 55.556 3.49 0.00 44.03 5.36
972 1009 0.893727 GTGGACGACCAAAATGGGCT 60.894 55.000 8.54 0.00 45.79 5.19
973 1010 0.693622 TGGACGACCAAAATGGGCTA 59.306 50.000 3.49 0.00 45.79 3.93
974 1011 1.339631 TGGACGACCAAAATGGGCTAG 60.340 52.381 3.49 0.00 45.79 3.42
975 1012 0.733150 GACGACCAAAATGGGCTAGC 59.267 55.000 6.04 6.04 45.79 3.42
976 1013 0.037590 ACGACCAAAATGGGCTAGCA 59.962 50.000 18.24 0.00 45.79 3.49
977 1014 0.451783 CGACCAAAATGGGCTAGCAC 59.548 55.000 18.24 14.86 45.79 4.40
978 1015 1.544724 GACCAAAATGGGCTAGCACA 58.455 50.000 24.48 24.48 44.12 4.57
979 1016 1.474077 GACCAAAATGGGCTAGCACAG 59.526 52.381 26.22 13.63 44.12 3.66
980 1017 0.819582 CCAAAATGGGCTAGCACAGG 59.180 55.000 26.22 16.94 32.67 4.00
1041 1078 0.667993 TTTCAGGTGGCAGAAAAGCG 59.332 50.000 0.00 0.00 31.35 4.68
1047 1084 1.519408 GTGGCAGAAAAGCGAAGGTA 58.481 50.000 0.00 0.00 37.06 3.08
1055 1092 5.106673 GCAGAAAAGCGAAGGTACAAGTATT 60.107 40.000 0.00 0.00 37.06 1.89
1158 1195 2.165641 ACTGATGCAGGCAACATTCATG 59.834 45.455 4.66 0.00 35.51 3.07
1176 1213 7.885399 ACATTCATGCTCCTATAAATACCTTCC 59.115 37.037 0.00 0.00 0.00 3.46
1180 1217 4.246458 GCTCCTATAAATACCTTCCTGCG 58.754 47.826 0.00 0.00 0.00 5.18
1181 1218 4.262506 GCTCCTATAAATACCTTCCTGCGT 60.263 45.833 0.00 0.00 0.00 5.24
1219 1256 3.898509 GCACTTGGCAACGGCACA 61.899 61.111 12.12 0.00 43.71 4.57
1220 1257 2.804167 CACTTGGCAACGGCACAA 59.196 55.556 0.00 0.00 43.71 3.33
1222 1259 1.453015 ACTTGGCAACGGCACAAGA 60.453 52.632 18.22 0.00 44.31 3.02
1223 1260 1.008538 CTTGGCAACGGCACAAGAC 60.009 57.895 0.00 0.00 44.31 3.01
1224 1261 1.723608 CTTGGCAACGGCACAAGACA 61.724 55.000 0.00 0.00 44.31 3.41
1225 1262 1.999071 TTGGCAACGGCACAAGACAC 61.999 55.000 0.00 0.00 43.71 3.67
1226 1263 2.477176 GGCAACGGCACAAGACACA 61.477 57.895 0.00 0.00 43.71 3.72
1227 1264 1.298339 GCAACGGCACAAGACACAC 60.298 57.895 0.00 0.00 40.72 3.82
1243 1280 3.290710 ACACACCACAAAAGAAGCAGAT 58.709 40.909 0.00 0.00 0.00 2.90
1245 1282 4.516698 ACACACCACAAAAGAAGCAGATAG 59.483 41.667 0.00 0.00 0.00 2.08
1294 1331 1.749634 GGAGTACGAGCACCAGTACAT 59.250 52.381 8.22 0.00 43.98 2.29
1471 1522 9.480053 AACAAGCTACAACTAAACGAAATAGTA 57.520 29.630 0.00 0.00 33.36 1.82
1472 1523 9.136952 ACAAGCTACAACTAAACGAAATAGTAG 57.863 33.333 0.00 0.00 33.36 2.57
1473 1524 9.350357 CAAGCTACAACTAAACGAAATAGTAGA 57.650 33.333 0.00 0.00 33.36 2.59
1499 1572 6.471233 CTCACTGTAGATGAGTGGGATAAA 57.529 41.667 0.00 0.00 43.60 1.40
1500 1573 6.471233 TCACTGTAGATGAGTGGGATAAAG 57.529 41.667 0.00 0.00 41.11 1.85
1501 1574 5.958380 TCACTGTAGATGAGTGGGATAAAGT 59.042 40.000 0.00 0.00 41.11 2.66
1508 1617 4.563140 TGAGTGGGATAAAGTGGGTAAC 57.437 45.455 0.00 0.00 0.00 2.50
1524 1641 6.279123 GTGGGTAACTACTAGCTGTATTTCC 58.721 44.000 0.00 2.59 46.07 3.13
1527 1644 7.147776 TGGGTAACTACTAGCTGTATTTCCTTC 60.148 40.741 0.00 0.00 0.00 3.46
1553 1670 5.293560 GGATTTTAGAAGGATGGTCTCTCG 58.706 45.833 0.00 0.00 0.00 4.04
1554 1671 3.802948 TTTAGAAGGATGGTCTCTCGC 57.197 47.619 0.00 0.00 0.00 5.03
1567 1687 7.147983 GGATGGTCTCTCGCTTAATATACTGAT 60.148 40.741 0.00 0.00 0.00 2.90
1569 1689 6.128254 TGGTCTCTCGCTTAATATACTGATCG 60.128 42.308 0.00 0.00 0.00 3.69
1584 1730 1.270785 TGATCGTCTGCTTGGCTTGAA 60.271 47.619 0.00 0.00 0.00 2.69
1634 1817 7.604927 GTGTGATAGATGTACAAACTTTGGGTA 59.395 37.037 0.00 0.00 34.12 3.69
1635 1818 8.325787 TGTGATAGATGTACAAACTTTGGGTAT 58.674 33.333 0.00 0.00 34.12 2.73
1636 1819 9.826574 GTGATAGATGTACAAACTTTGGGTATA 57.173 33.333 0.00 0.00 34.12 1.47
1681 2621 5.932303 TGTGCTTGTGGAGTACTTAATCTTC 59.068 40.000 0.00 0.00 41.10 2.87
1682 2622 5.062308 GTGCTTGTGGAGTACTTAATCTTCG 59.938 44.000 0.00 0.00 37.91 3.79
1687 2627 8.475331 TTGTGGAGTACTTAATCTTCGAATTC 57.525 34.615 0.00 0.00 0.00 2.17
1751 3984 2.365617 CGAGAAGCTCCATTTAGGGCTA 59.634 50.000 0.00 0.00 41.31 3.93
1770 4026 5.299531 GGGCTATCTAAAGAATGGTGTTTCC 59.700 44.000 0.00 0.00 0.00 3.13
1775 4031 6.633500 TCTAAAGAATGGTGTTTCCTTGTG 57.367 37.500 0.00 0.00 37.07 3.33
1816 4073 8.617290 AGTCAAATTTCAACTAAATACGAGGT 57.383 30.769 0.00 0.00 36.76 3.85
1864 4121 0.798776 CAGGCACATGGTTTCTCGAC 59.201 55.000 0.00 0.00 0.00 4.20
2131 4979 1.739562 CGAAGAGCAGTGGCAGACC 60.740 63.158 0.00 0.00 44.61 3.85
2132 4980 1.676384 GAAGAGCAGTGGCAGACCT 59.324 57.895 0.00 0.00 44.61 3.85
2133 4981 0.898320 GAAGAGCAGTGGCAGACCTA 59.102 55.000 0.00 0.00 44.61 3.08
2134 4982 0.901124 AAGAGCAGTGGCAGACCTAG 59.099 55.000 0.00 0.00 44.61 3.02
2135 4983 1.153469 GAGCAGTGGCAGACCTAGC 60.153 63.158 0.00 0.00 44.61 3.42
2141 4989 2.586792 GGCAGACCTAGCCCACTG 59.413 66.667 0.00 0.00 46.50 3.66
2142 4990 2.586792 GCAGACCTAGCCCACTGG 59.413 66.667 0.00 0.00 0.00 4.00
2161 5009 3.341629 CCAGGGTGGGCCATCAGT 61.342 66.667 20.42 1.37 36.17 3.41
2162 5010 2.044650 CAGGGTGGGCCATCAGTG 60.045 66.667 20.42 11.61 36.17 3.66
2175 5023 4.471904 CCATCAGTGGTACTGTACACAT 57.528 45.455 18.79 1.77 46.03 3.21
2176 5024 5.592104 CCATCAGTGGTACTGTACACATA 57.408 43.478 18.79 8.19 46.03 2.29
2177 5025 5.348986 CCATCAGTGGTACTGTACACATAC 58.651 45.833 18.79 11.55 46.03 2.39
2179 5027 6.406961 CCATCAGTGGTACTGTACACATACAT 60.407 42.308 18.79 1.90 46.03 2.29
2180 5028 6.203808 TCAGTGGTACTGTACACATACATC 57.796 41.667 18.79 0.69 46.03 3.06
2181 5029 5.949952 TCAGTGGTACTGTACACATACATCT 59.050 40.000 18.79 5.77 46.03 2.90
2182 5030 7.114095 TCAGTGGTACTGTACACATACATCTA 58.886 38.462 18.79 0.00 46.03 1.98
2183 5031 7.778382 TCAGTGGTACTGTACACATACATCTAT 59.222 37.037 18.79 0.00 46.03 1.98
2184 5032 8.414003 CAGTGGTACTGTACACATACATCTATT 58.586 37.037 18.79 0.00 41.19 1.73
2185 5033 8.978472 AGTGGTACTGTACACATACATCTATTT 58.022 33.333 18.79 0.00 40.57 1.40
2216 5064 9.965824 TCTTTTATTTTTAGCCTTTCTTCTGTG 57.034 29.630 0.00 0.00 0.00 3.66
2219 5067 9.912634 TTTATTTTTAGCCTTTCTTCTGTGATG 57.087 29.630 0.00 0.00 0.00 3.07
2220 5068 6.959639 TTTTTAGCCTTTCTTCTGTGATGT 57.040 33.333 0.00 0.00 0.00 3.06
2221 5069 8.635765 ATTTTTAGCCTTTCTTCTGTGATGTA 57.364 30.769 0.00 0.00 0.00 2.29
2224 5072 9.905713 TTTTAGCCTTTCTTCTGTGATGTATAT 57.094 29.630 0.00 0.00 0.00 0.86
2225 5073 9.905713 TTTAGCCTTTCTTCTGTGATGTATATT 57.094 29.630 0.00 0.00 0.00 1.28
2228 5076 7.659390 AGCCTTTCTTCTGTGATGTATATTAGC 59.341 37.037 0.00 0.00 0.00 3.09
2229 5077 7.659390 GCCTTTCTTCTGTGATGTATATTAGCT 59.341 37.037 0.00 0.00 0.00 3.32
2249 5097 6.521527 AGCTATATTTCCAAATCTCAGGGT 57.478 37.500 0.00 0.00 0.00 4.34
2250 5098 6.302269 AGCTATATTTCCAAATCTCAGGGTG 58.698 40.000 0.00 0.00 0.00 4.61
2252 5100 2.603075 TTTCCAAATCTCAGGGTGGG 57.397 50.000 0.00 0.00 0.00 4.61
2253 5101 0.039618 TTCCAAATCTCAGGGTGGGC 59.960 55.000 0.00 0.00 0.00 5.36
2254 5102 1.380380 CCAAATCTCAGGGTGGGCC 60.380 63.158 0.00 0.00 0.00 5.80
2256 5104 0.032813 CAAATCTCAGGGTGGGCCAT 60.033 55.000 10.70 0.00 36.17 4.40
2258 5106 1.941403 AATCTCAGGGTGGGCCATGG 61.941 60.000 10.70 7.63 45.85 3.66
2259 5107 4.828296 CTCAGGGTGGGCCATGGC 62.828 72.222 29.47 29.47 45.85 4.40
2278 5126 3.000819 CACCGTGGCCACCCTCTA 61.001 66.667 29.95 0.00 0.00 2.43
2279 5127 3.001406 ACCGTGGCCACCCTCTAC 61.001 66.667 29.95 3.46 0.00 2.59
2280 5128 3.782443 CCGTGGCCACCCTCTACC 61.782 72.222 29.95 2.63 0.00 3.18
2281 5129 2.683933 CGTGGCCACCCTCTACCT 60.684 66.667 29.95 0.00 0.00 3.08
2282 5130 2.722201 CGTGGCCACCCTCTACCTC 61.722 68.421 29.95 0.98 0.00 3.85
2283 5131 2.040606 TGGCCACCCTCTACCTCC 59.959 66.667 0.00 0.00 0.00 4.30
2287 5135 3.528370 CACCCTCTACCTCCGCCG 61.528 72.222 0.00 0.00 0.00 6.46
2304 5155 2.982130 GCTGGCGAAGAGGAAGGA 59.018 61.111 0.00 0.00 0.00 3.36
2315 5166 2.753247 AGAGGAAGGACATCACCCTAC 58.247 52.381 0.00 0.00 32.77 3.18
2317 5168 3.532232 AGAGGAAGGACATCACCCTACTA 59.468 47.826 0.00 0.00 32.77 1.82
2331 5182 1.722636 CTACTAGGGACGGTGGCGAC 61.723 65.000 0.00 0.00 0.00 5.19
2332 5183 4.189188 CTAGGGACGGTGGCGACG 62.189 72.222 0.00 0.00 37.36 5.12
2370 5221 4.038763 TCACTTGTCTCTTATGACGTTGGT 59.961 41.667 0.00 0.00 39.64 3.67
2373 5224 2.000447 GTCTCTTATGACGTTGGTGGC 59.000 52.381 0.00 0.00 0.00 5.01
2379 5230 1.227999 ATGACGTTGGTGGCGACTTG 61.228 55.000 0.00 0.00 0.00 3.16
2380 5231 3.236618 GACGTTGGTGGCGACTTGC 62.237 63.158 0.00 0.00 45.38 4.01
2408 5259 6.494146 TCAAGAGCTATGATGTGAGATCATCT 59.506 38.462 8.46 1.08 43.03 2.90
2413 5264 9.656040 GAGCTATGATGTGAGATCATCTATTTT 57.344 33.333 8.46 0.00 43.03 1.82
2433 5284 4.955925 TTTATATGGGCTTGTTGACACG 57.044 40.909 0.00 0.00 0.00 4.49
2442 5293 2.851824 GCTTGTTGACACGAGTTTTTGG 59.148 45.455 0.00 0.00 36.82 3.28
2445 5296 2.182014 GTTGACACGAGTTTTTGGCAC 58.818 47.619 0.00 0.00 27.44 5.01
2446 5297 1.454201 TGACACGAGTTTTTGGCACA 58.546 45.000 0.00 0.00 0.00 4.57
2467 5318 7.148373 GGCACACCAGAAAACGTAATTAAGATA 60.148 37.037 5.36 0.00 35.26 1.98
2490 5341 9.191995 GATAACCTTAAACAAAACAATGTCCAG 57.808 33.333 0.00 0.00 31.81 3.86
2504 5355 8.641498 AACAATGTCCAGTATGAAAAATCTCT 57.359 30.769 0.00 0.00 39.69 3.10
2505 5356 8.048534 ACAATGTCCAGTATGAAAAATCTCTG 57.951 34.615 0.00 0.00 39.69 3.35
2546 5397 0.608035 TGATGTTTGGGGCCGAAGAC 60.608 55.000 0.05 4.16 0.00 3.01
2570 5421 3.793559 GCTCGGAGTGCTAAAATTAGGA 58.206 45.455 6.90 0.00 44.39 2.94
2580 5432 6.514063 GTGCTAAAATTAGGACTCGGAGTAT 58.486 40.000 11.27 5.63 45.26 2.12
2582 5434 6.984474 TGCTAAAATTAGGACTCGGAGTATTG 59.016 38.462 11.27 0.00 0.00 1.90
2586 5438 4.627611 TTAGGACTCGGAGTATTGTTCG 57.372 45.455 11.27 0.00 0.00 3.95
2596 5448 3.450578 GAGTATTGTTCGGCCGATTACA 58.549 45.455 31.56 27.83 0.00 2.41
2611 5463 3.933332 CGATTACACCTCCAAGAAGTTCC 59.067 47.826 0.00 0.00 0.00 3.62
2619 5471 4.104738 ACCTCCAAGAAGTTCCAAGATGAA 59.895 41.667 0.00 0.00 0.00 2.57
2621 5473 5.536161 CCTCCAAGAAGTTCCAAGATGAAAA 59.464 40.000 0.00 0.00 0.00 2.29
2622 5474 6.040842 CCTCCAAGAAGTTCCAAGATGAAAAA 59.959 38.462 0.00 0.00 0.00 1.94
2623 5475 7.042797 TCCAAGAAGTTCCAAGATGAAAAAG 57.957 36.000 0.00 0.00 0.00 2.27
2625 5477 6.698766 CCAAGAAGTTCCAAGATGAAAAAGTG 59.301 38.462 0.00 0.00 0.00 3.16
2627 5479 7.410120 AGAAGTTCCAAGATGAAAAAGTGTT 57.590 32.000 0.00 0.00 0.00 3.32
2628 5480 7.484140 AGAAGTTCCAAGATGAAAAAGTGTTC 58.516 34.615 0.00 0.00 0.00 3.18
2629 5481 7.340487 AGAAGTTCCAAGATGAAAAAGTGTTCT 59.660 33.333 0.00 0.00 0.00 3.01
2630 5482 8.519799 AAGTTCCAAGATGAAAAAGTGTTCTA 57.480 30.769 0.00 0.00 0.00 2.10
2631 5483 7.931275 AGTTCCAAGATGAAAAAGTGTTCTAC 58.069 34.615 0.00 0.00 0.00 2.59
2632 5484 7.556275 AGTTCCAAGATGAAAAAGTGTTCTACA 59.444 33.333 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.880047 TCCGTTTACAGTGGATAGTGG 57.120 47.619 0.00 0.00 0.00 4.00
4 5 6.495526 TCCATATGATCCGTTTACAGTGGATA 59.504 38.462 3.65 0.00 42.46 2.59
9 10 7.387948 GCTAATTCCATATGATCCGTTTACAGT 59.612 37.037 3.65 0.00 0.00 3.55
10 11 7.604164 AGCTAATTCCATATGATCCGTTTACAG 59.396 37.037 3.65 0.00 0.00 2.74
11 12 7.450074 AGCTAATTCCATATGATCCGTTTACA 58.550 34.615 3.65 0.00 0.00 2.41
12 13 7.907214 AGCTAATTCCATATGATCCGTTTAC 57.093 36.000 3.65 0.00 0.00 2.01
13 14 8.375506 AGAAGCTAATTCCATATGATCCGTTTA 58.624 33.333 3.65 0.00 38.84 2.01
14 15 7.227156 AGAAGCTAATTCCATATGATCCGTTT 58.773 34.615 3.65 0.00 38.84 3.60
15 16 6.773638 AGAAGCTAATTCCATATGATCCGTT 58.226 36.000 3.65 0.00 38.84 4.44
16 17 6.365970 AGAAGCTAATTCCATATGATCCGT 57.634 37.500 3.65 0.00 38.84 4.69
17 18 7.678947 AAAGAAGCTAATTCCATATGATCCG 57.321 36.000 3.65 0.00 38.84 4.18
18 19 9.905171 GAAAAAGAAGCTAATTCCATATGATCC 57.095 33.333 3.65 0.00 38.84 3.36
24 25 9.331282 GCTCTAGAAAAAGAAGCTAATTCCATA 57.669 33.333 0.00 0.00 38.84 2.74
25 26 7.831193 TGCTCTAGAAAAAGAAGCTAATTCCAT 59.169 33.333 0.00 0.00 38.84 3.41
26 27 7.119846 GTGCTCTAGAAAAAGAAGCTAATTCCA 59.880 37.037 0.00 0.00 38.84 3.53
27 28 7.119846 TGTGCTCTAGAAAAAGAAGCTAATTCC 59.880 37.037 0.00 0.00 38.84 3.01
28 29 7.960195 GTGTGCTCTAGAAAAAGAAGCTAATTC 59.040 37.037 0.00 0.00 38.28 2.17
29 30 7.094592 GGTGTGCTCTAGAAAAAGAAGCTAATT 60.095 37.037 0.00 0.00 0.00 1.40
30 31 6.372937 GGTGTGCTCTAGAAAAAGAAGCTAAT 59.627 38.462 0.00 0.00 0.00 1.73
31 32 5.701290 GGTGTGCTCTAGAAAAAGAAGCTAA 59.299 40.000 0.00 0.00 0.00 3.09
32 33 5.012148 AGGTGTGCTCTAGAAAAAGAAGCTA 59.988 40.000 0.00 0.00 0.00 3.32
33 34 4.068599 GGTGTGCTCTAGAAAAAGAAGCT 58.931 43.478 0.00 0.00 0.00 3.74
34 35 4.068599 AGGTGTGCTCTAGAAAAAGAAGC 58.931 43.478 0.00 0.00 0.00 3.86
35 36 5.995055 CAAGGTGTGCTCTAGAAAAAGAAG 58.005 41.667 0.00 0.00 0.00 2.85
53 54 1.739067 GAAACATCGCCTAGCAAGGT 58.261 50.000 0.00 0.00 45.64 3.50
54 55 0.652592 CGAAACATCGCCTAGCAAGG 59.347 55.000 0.00 0.00 46.76 3.61
55 56 1.324736 GTCGAAACATCGCCTAGCAAG 59.675 52.381 0.00 0.00 0.00 4.01
56 57 1.067142 AGTCGAAACATCGCCTAGCAA 60.067 47.619 0.00 0.00 0.00 3.91
57 58 0.530744 AGTCGAAACATCGCCTAGCA 59.469 50.000 0.00 0.00 0.00 3.49
58 59 0.924090 CAGTCGAAACATCGCCTAGC 59.076 55.000 0.00 0.00 0.00 3.42
59 60 2.561733 TCAGTCGAAACATCGCCTAG 57.438 50.000 0.00 0.00 0.00 3.02
60 61 2.230508 AGTTCAGTCGAAACATCGCCTA 59.769 45.455 1.62 0.00 31.43 3.93
61 62 1.000955 AGTTCAGTCGAAACATCGCCT 59.999 47.619 1.62 0.00 31.43 5.52
62 63 1.126846 CAGTTCAGTCGAAACATCGCC 59.873 52.381 1.62 0.00 31.43 5.54
63 64 1.126846 CCAGTTCAGTCGAAACATCGC 59.873 52.381 1.62 0.00 31.43 4.58
64 65 2.404215 ACCAGTTCAGTCGAAACATCG 58.596 47.619 1.62 0.00 31.43 3.84
65 66 4.748102 TGTTACCAGTTCAGTCGAAACATC 59.252 41.667 1.62 0.00 31.43 3.06
68 69 4.569564 ACTTGTTACCAGTTCAGTCGAAAC 59.430 41.667 0.00 0.00 31.43 2.78
87 88 2.663879 CGTGCTAGCTGCTTTTCACTTG 60.664 50.000 17.23 0.00 43.37 3.16
94 95 1.151668 CTGAACGTGCTAGCTGCTTT 58.848 50.000 17.23 8.63 43.37 3.51
154 155 9.484806 AATATGGAGAACATGAGAAAATTCCTT 57.515 29.630 0.00 0.00 40.82 3.36
155 156 8.910944 CAATATGGAGAACATGAGAAAATTCCT 58.089 33.333 0.00 0.00 40.82 3.36
157 158 9.727627 GTCAATATGGAGAACATGAGAAAATTC 57.272 33.333 0.00 0.00 40.82 2.17
159 160 8.812513 TGTCAATATGGAGAACATGAGAAAAT 57.187 30.769 0.00 0.00 40.82 1.82
169 170 9.171877 AGAGAGAATTTTGTCAATATGGAGAAC 57.828 33.333 0.00 0.00 0.00 3.01
192 198 9.521503 TCATAACACGAATCTCTGAAATAAGAG 57.478 33.333 0.00 0.00 44.34 2.85
197 203 9.035607 GTGTATCATAACACGAATCTCTGAAAT 57.964 33.333 0.00 0.00 40.31 2.17
198 204 8.407457 GTGTATCATAACACGAATCTCTGAAA 57.593 34.615 0.00 0.00 40.31 2.69
199 205 7.987268 GTGTATCATAACACGAATCTCTGAA 57.013 36.000 0.00 0.00 40.31 3.02
241 247 8.974408 CGACGAAATATTATGATACACTTTGGA 58.026 33.333 0.00 0.00 0.00 3.53
242 248 8.761497 ACGACGAAATATTATGATACACTTTGG 58.239 33.333 0.00 0.00 0.00 3.28
243 249 9.567917 CACGACGAAATATTATGATACACTTTG 57.432 33.333 0.00 0.00 0.00 2.77
245 251 8.867112 ACACGACGAAATATTATGATACACTT 57.133 30.769 0.00 0.00 0.00 3.16
261 290 3.434641 TGTTTTGTTTGGTACACGACGAA 59.565 39.130 0.00 0.00 39.29 3.85
264 293 6.412653 CAGTAATGTTTTGTTTGGTACACGAC 59.587 38.462 0.00 0.00 39.29 4.34
270 299 9.796180 ACTATACCAGTAATGTTTTGTTTGGTA 57.204 29.630 3.27 3.27 42.09 3.25
279 308 9.357161 TGGTTTCAAACTATACCAGTAATGTTT 57.643 29.630 0.00 6.01 36.04 2.83
280 309 8.927675 TGGTTTCAAACTATACCAGTAATGTT 57.072 30.769 0.00 0.00 36.04 2.71
315 344 6.430000 GGGAGTATTACATAATGTTTCGCCAT 59.570 38.462 0.00 0.00 0.00 4.40
319 348 6.365247 CGGAGGGAGTATTACATAATGTTTCG 59.635 42.308 0.00 0.00 0.00 3.46
327 356 4.458256 TGGACGGAGGGAGTATTACATA 57.542 45.455 0.00 0.00 0.00 2.29
334 363 2.832643 TATGTTGGACGGAGGGAGTA 57.167 50.000 0.00 0.00 0.00 2.59
335 364 1.831736 CTTATGTTGGACGGAGGGAGT 59.168 52.381 0.00 0.00 0.00 3.85
336 365 1.831736 ACTTATGTTGGACGGAGGGAG 59.168 52.381 0.00 0.00 0.00 4.30
337 366 1.553248 CACTTATGTTGGACGGAGGGA 59.447 52.381 0.00 0.00 0.00 4.20
338 367 1.278127 ACACTTATGTTGGACGGAGGG 59.722 52.381 0.00 0.00 34.46 4.30
339 368 2.233922 AGACACTTATGTTGGACGGAGG 59.766 50.000 0.00 0.00 39.95 4.30
340 369 3.594603 AGACACTTATGTTGGACGGAG 57.405 47.619 0.00 0.00 39.95 4.63
341 370 5.471556 TTAAGACACTTATGTTGGACGGA 57.528 39.130 0.00 0.00 39.95 4.69
342 371 6.737254 AATTAAGACACTTATGTTGGACGG 57.263 37.500 0.00 0.00 39.95 4.79
343 372 9.755064 CTAAAATTAAGACACTTATGTTGGACG 57.245 33.333 0.00 0.00 39.95 4.79
393 422 9.758651 GTCCCAAAATAAGTGTCTTAATTTTGT 57.241 29.630 14.67 1.01 37.32 2.83
394 423 8.911662 CGTCCCAAAATAAGTGTCTTAATTTTG 58.088 33.333 10.80 10.80 38.19 2.44
395 424 8.085909 CCGTCCCAAAATAAGTGTCTTAATTTT 58.914 33.333 1.39 0.00 0.00 1.82
396 425 7.449086 TCCGTCCCAAAATAAGTGTCTTAATTT 59.551 33.333 0.00 0.00 0.00 1.82
397 426 6.943718 TCCGTCCCAAAATAAGTGTCTTAATT 59.056 34.615 0.00 0.00 0.00 1.40
398 427 6.478129 TCCGTCCCAAAATAAGTGTCTTAAT 58.522 36.000 0.00 0.00 0.00 1.40
399 428 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
400 429 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
401 430 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
402 431 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
403 432 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
404 433 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
405 434 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
406 435 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
407 436 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
408 437 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
409 438 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
410 439 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
411 440 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
412 441 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
413 442 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
414 443 1.133575 CATAGTACTCCCTCCGTCCCA 60.134 57.143 0.00 0.00 0.00 4.37
415 444 1.144503 TCATAGTACTCCCTCCGTCCC 59.855 57.143 0.00 0.00 0.00 4.46
416 445 2.653234 TCATAGTACTCCCTCCGTCC 57.347 55.000 0.00 0.00 0.00 4.79
417 446 3.698040 TGTTTCATAGTACTCCCTCCGTC 59.302 47.826 0.00 0.00 0.00 4.79
418 447 3.705051 TGTTTCATAGTACTCCCTCCGT 58.295 45.455 0.00 0.00 0.00 4.69
419 448 4.401519 TCTTGTTTCATAGTACTCCCTCCG 59.598 45.833 0.00 0.00 0.00 4.63
420 449 5.187186 TGTCTTGTTTCATAGTACTCCCTCC 59.813 44.000 0.00 0.00 0.00 4.30
421 450 6.282199 TGTCTTGTTTCATAGTACTCCCTC 57.718 41.667 0.00 0.00 0.00 4.30
422 451 6.681729 TTGTCTTGTTTCATAGTACTCCCT 57.318 37.500 0.00 0.00 0.00 4.20
423 452 7.923414 ATTTGTCTTGTTTCATAGTACTCCC 57.077 36.000 0.00 0.00 0.00 4.30
472 502 4.408993 TTGTCATGCTTTGAGATTCGTG 57.591 40.909 0.00 0.00 34.17 4.35
488 518 5.725362 TGTGTATGTATCCATCGTTTGTCA 58.275 37.500 0.00 0.00 32.29 3.58
497 528 5.773176 TCGGACATACTGTGTATGTATCCAT 59.227 40.000 19.30 0.95 42.36 3.41
508 539 2.103094 ACCATCCATCGGACATACTGTG 59.897 50.000 0.00 0.00 32.98 3.66
511 542 4.114015 TCTACCATCCATCGGACATACT 57.886 45.455 0.00 0.00 32.98 2.12
516 547 4.039245 TGATCTTTCTACCATCCATCGGAC 59.961 45.833 0.00 0.00 32.98 4.79
524 555 3.799420 GCACGAGTGATCTTTCTACCATC 59.201 47.826 7.50 0.00 0.00 3.51
535 566 1.996191 GGAGAAGTTGCACGAGTGATC 59.004 52.381 7.50 0.00 0.00 2.92
539 570 3.290776 GTGGAGAAGTTGCACGAGT 57.709 52.632 0.00 0.00 38.41 4.18
544 575 2.708216 TCACTTGTGGAGAAGTTGCA 57.292 45.000 0.64 0.00 33.75 4.08
552 583 0.873054 CAGCTGCTTCACTTGTGGAG 59.127 55.000 0.00 4.75 0.00 3.86
558 589 1.340405 CCATACCCAGCTGCTTCACTT 60.340 52.381 8.66 0.00 0.00 3.16
576 607 0.269477 TTATGCTAGGCCCCTACCCA 59.731 55.000 0.00 0.00 0.00 4.51
577 608 1.073444 GTTTATGCTAGGCCCCTACCC 59.927 57.143 0.00 0.00 0.00 3.69
578 609 1.073444 GGTTTATGCTAGGCCCCTACC 59.927 57.143 0.00 0.00 0.00 3.18
579 610 2.055579 AGGTTTATGCTAGGCCCCTAC 58.944 52.381 0.00 0.00 0.00 3.18
580 611 2.507478 AGGTTTATGCTAGGCCCCTA 57.493 50.000 0.00 0.00 0.00 3.53
581 612 1.608425 AAGGTTTATGCTAGGCCCCT 58.392 50.000 0.00 0.00 0.00 4.79
646 677 4.161565 ACGTGGAGTTGCCTATTTATCTCA 59.838 41.667 0.00 0.00 37.63 3.27
723 756 6.976934 TTCAGTTGAAGCCCTAATCTTTTT 57.023 33.333 0.00 0.00 0.00 1.94
758 791 6.266558 AGAAGACTCTGATGAACTACACAAGT 59.733 38.462 0.00 0.00 41.49 3.16
773 806 5.202409 ACCAATCAGGCCAGAAGACTCTG 62.202 52.174 5.01 0.00 44.07 3.35
775 808 1.280421 ACCAATCAGGCCAGAAGACTC 59.720 52.381 5.01 0.00 43.14 3.36
776 809 1.366319 ACCAATCAGGCCAGAAGACT 58.634 50.000 5.01 0.00 43.14 3.24
789 822 4.702131 AGCACACCTCTCATTTTACCAATC 59.298 41.667 0.00 0.00 0.00 2.67
790 823 4.666512 AGCACACCTCTCATTTTACCAAT 58.333 39.130 0.00 0.00 0.00 3.16
791 824 4.072131 GAGCACACCTCTCATTTTACCAA 58.928 43.478 0.00 0.00 37.60 3.67
819 854 6.166982 GCCTTCTGCGGTTATTTCTATAGAT 58.833 40.000 2.58 0.00 0.00 1.98
822 857 5.284861 TGCCTTCTGCGGTTATTTCTATA 57.715 39.130 0.00 0.00 45.60 1.31
832 867 2.670934 CAGCTTGCCTTCTGCGGT 60.671 61.111 0.00 0.00 45.60 5.68
836 871 2.466846 CAAAACACAGCTTGCCTTCTG 58.533 47.619 0.00 0.00 36.45 3.02
870 905 4.142513 GGAGCACACCTCTCATTTCATTTC 60.143 45.833 0.00 0.00 40.57 2.17
871 906 3.760684 GGAGCACACCTCTCATTTCATTT 59.239 43.478 0.00 0.00 40.57 2.32
872 907 3.245016 TGGAGCACACCTCTCATTTCATT 60.245 43.478 0.00 0.00 40.57 2.57
873 908 2.306805 TGGAGCACACCTCTCATTTCAT 59.693 45.455 0.00 0.00 40.57 2.57
900 935 6.128553 CGTTGCTTATGAAGACACTTGTATGT 60.129 38.462 0.00 0.00 34.78 2.29
901 936 6.243551 CGTTGCTTATGAAGACACTTGTATG 58.756 40.000 0.00 0.00 0.00 2.39
902 937 5.163854 GCGTTGCTTATGAAGACACTTGTAT 60.164 40.000 0.00 0.00 0.00 2.29
903 938 4.151689 GCGTTGCTTATGAAGACACTTGTA 59.848 41.667 0.00 0.00 0.00 2.41
905 940 3.187227 AGCGTTGCTTATGAAGACACTTG 59.813 43.478 0.00 0.00 33.89 3.16
942 979 3.036084 CGTCCACGGTGCAGTGAC 61.036 66.667 7.62 4.02 44.43 3.67
948 985 1.512156 ATTTTGGTCGTCCACGGTGC 61.512 55.000 0.00 0.00 44.22 5.01
949 986 0.237235 CATTTTGGTCGTCCACGGTG 59.763 55.000 0.00 0.00 44.22 4.94
968 1005 0.744771 GTGCTAACCTGTGCTAGCCC 60.745 60.000 13.29 0.00 39.89 5.19
971 1008 3.533606 ATCTGTGCTAACCTGTGCTAG 57.466 47.619 0.00 0.00 0.00 3.42
972 1009 4.382685 GGTTATCTGTGCTAACCTGTGCTA 60.383 45.833 4.92 0.00 43.14 3.49
973 1010 3.600388 GTTATCTGTGCTAACCTGTGCT 58.400 45.455 0.00 0.00 0.00 4.40
974 1011 2.678336 GGTTATCTGTGCTAACCTGTGC 59.322 50.000 4.92 0.00 43.14 4.57
975 1012 3.937814 TGGTTATCTGTGCTAACCTGTG 58.062 45.455 11.77 0.00 45.53 3.66
976 1013 4.286032 TCTTGGTTATCTGTGCTAACCTGT 59.714 41.667 11.77 0.00 45.53 4.00
977 1014 4.832248 TCTTGGTTATCTGTGCTAACCTG 58.168 43.478 11.77 6.35 45.53 4.00
978 1015 5.499004 TTCTTGGTTATCTGTGCTAACCT 57.501 39.130 11.77 0.00 45.53 3.50
979 1016 5.648092 ACATTCTTGGTTATCTGTGCTAACC 59.352 40.000 5.16 5.16 45.53 2.85
980 1017 6.743575 ACATTCTTGGTTATCTGTGCTAAC 57.256 37.500 0.00 0.00 0.00 2.34
1002 1039 0.304705 GGTGCACGCATACTGCATAC 59.695 55.000 11.45 0.00 46.08 2.39
1055 1092 9.973661 TCAGGAATAAAGTGGATAAAGATTCAA 57.026 29.630 0.00 0.00 0.00 2.69
1101 1138 7.594758 GTGTGTGCATCTTATTGTTTGTGTATT 59.405 33.333 0.00 0.00 0.00 1.89
1158 1195 4.246458 CGCAGGAAGGTATTTATAGGAGC 58.754 47.826 0.00 0.00 0.00 4.70
1176 1213 0.103937 GAGGAAGGATGAGGACGCAG 59.896 60.000 0.00 0.00 0.00 5.18
1180 1217 2.834549 TCACTTGAGGAAGGATGAGGAC 59.165 50.000 0.00 0.00 32.95 3.85
1181 1218 3.102972 CTCACTTGAGGAAGGATGAGGA 58.897 50.000 0.00 0.00 38.48 3.71
1211 1248 1.078072 TGGTGTGTCTTGTGCCGTT 60.078 52.632 0.00 0.00 0.00 4.44
1212 1249 1.817941 GTGGTGTGTCTTGTGCCGT 60.818 57.895 0.00 0.00 0.00 5.68
1218 1255 3.119531 TGCTTCTTTTGTGGTGTGTCTTG 60.120 43.478 0.00 0.00 0.00 3.02
1219 1256 3.088532 TGCTTCTTTTGTGGTGTGTCTT 58.911 40.909 0.00 0.00 0.00 3.01
1220 1257 2.684881 CTGCTTCTTTTGTGGTGTGTCT 59.315 45.455 0.00 0.00 0.00 3.41
1222 1259 2.722094 TCTGCTTCTTTTGTGGTGTGT 58.278 42.857 0.00 0.00 0.00 3.72
1223 1260 3.996150 ATCTGCTTCTTTTGTGGTGTG 57.004 42.857 0.00 0.00 0.00 3.82
1224 1261 4.074970 CCTATCTGCTTCTTTTGTGGTGT 58.925 43.478 0.00 0.00 0.00 4.16
1225 1262 4.326826 TCCTATCTGCTTCTTTTGTGGTG 58.673 43.478 0.00 0.00 0.00 4.17
1226 1263 4.566488 CCTCCTATCTGCTTCTTTTGTGGT 60.566 45.833 0.00 0.00 0.00 4.16
1227 1264 3.944015 CCTCCTATCTGCTTCTTTTGTGG 59.056 47.826 0.00 0.00 0.00 4.17
1243 1280 3.634448 CGATCTTCTTCTTGCTCCTCCTA 59.366 47.826 0.00 0.00 0.00 2.94
1245 1282 2.428890 TCGATCTTCTTCTTGCTCCTCC 59.571 50.000 0.00 0.00 0.00 4.30
1476 1527 6.097554 ACTTTATCCCACTCATCTACAGTGAG 59.902 42.308 0.00 1.85 43.54 3.51
1477 1528 5.958380 ACTTTATCCCACTCATCTACAGTGA 59.042 40.000 0.00 0.00 43.54 3.41
1478 1529 6.045318 CACTTTATCCCACTCATCTACAGTG 58.955 44.000 0.00 0.00 40.96 3.66
1479 1530 5.129485 CCACTTTATCCCACTCATCTACAGT 59.871 44.000 0.00 0.00 0.00 3.55
1480 1531 5.453903 CCCACTTTATCCCACTCATCTACAG 60.454 48.000 0.00 0.00 0.00 2.74
1489 1540 5.347978 AGTAGTTACCCACTTTATCCCACT 58.652 41.667 0.00 0.00 36.88 4.00
1499 1572 6.097981 GGAAATACAGCTAGTAGTTACCCACT 59.902 42.308 8.34 0.00 40.74 4.00
1500 1573 6.097981 AGGAAATACAGCTAGTAGTTACCCAC 59.902 42.308 12.22 1.83 41.44 4.61
1501 1574 6.200114 AGGAAATACAGCTAGTAGTTACCCA 58.800 40.000 12.22 0.00 41.44 4.51
1524 1641 4.137543 CCATCCTTCTAAAATCCCCGAAG 58.862 47.826 0.00 0.00 34.22 3.79
1527 1644 3.136626 AGACCATCCTTCTAAAATCCCCG 59.863 47.826 0.00 0.00 0.00 5.73
1553 1670 6.090088 CCAAGCAGACGATCAGTATATTAAGC 59.910 42.308 0.00 0.00 0.00 3.09
1554 1671 6.090088 GCCAAGCAGACGATCAGTATATTAAG 59.910 42.308 0.00 0.00 0.00 1.85
1567 1687 1.159285 CATTCAAGCCAAGCAGACGA 58.841 50.000 0.00 0.00 0.00 4.20
1569 1689 1.538047 TCCATTCAAGCCAAGCAGAC 58.462 50.000 0.00 0.00 0.00 3.51
1584 1730 3.121738 ACTTCCTTTCGTTCGTTCCAT 57.878 42.857 0.00 0.00 0.00 3.41
1635 1818 8.150296 GCACACCCTGATGCATGTATATATATA 58.850 37.037 2.46 0.00 41.65 0.86
1636 1819 6.994496 GCACACCCTGATGCATGTATATATAT 59.006 38.462 2.46 0.00 41.65 0.86
1637 1820 6.156775 AGCACACCCTGATGCATGTATATATA 59.843 38.462 2.46 0.00 44.59 0.86
1638 1821 5.045359 AGCACACCCTGATGCATGTATATAT 60.045 40.000 2.46 0.00 44.59 0.86
1639 1822 4.286808 AGCACACCCTGATGCATGTATATA 59.713 41.667 2.46 0.00 44.59 0.86
1681 2621 6.868864 TCCAACAAACTAAGAGAGAGAATTCG 59.131 38.462 0.00 0.00 0.00 3.34
1682 2622 8.608844 TTCCAACAAACTAAGAGAGAGAATTC 57.391 34.615 0.00 0.00 0.00 2.17
1687 2627 8.614469 AATTCTTCCAACAAACTAAGAGAGAG 57.386 34.615 0.00 0.00 30.19 3.20
1751 3984 7.004086 TCACAAGGAAACACCATTCTTTAGAT 58.996 34.615 0.00 0.00 42.04 1.98
1770 4026 7.479980 TGACTTGAATACCAAAACTTCACAAG 58.520 34.615 0.00 0.00 38.34 3.16
1942 4760 9.638239 TGGCATTATTTAACAAGATGTCTTTTC 57.362 29.630 0.00 0.00 33.11 2.29
2125 4973 2.586792 CCAGTGGGCTAGGTCTGC 59.413 66.667 0.00 0.00 0.00 4.26
2126 4974 3.313874 CCCAGTGGGCTAGGTCTG 58.686 66.667 17.33 0.00 35.35 3.51
2145 4993 2.044650 CACTGATGGCCCACCCTG 60.045 66.667 0.00 0.00 33.59 4.45
2159 5007 8.534954 AATAGATGTATGTGTACAGTACCACT 57.465 34.615 8.30 13.31 43.62 4.00
2190 5038 9.965824 CACAGAAGAAAGGCTAAAAATAAAAGA 57.034 29.630 0.00 0.00 0.00 2.52
2191 5039 9.965824 TCACAGAAGAAAGGCTAAAAATAAAAG 57.034 29.630 0.00 0.00 0.00 2.27
2193 5041 9.912634 CATCACAGAAGAAAGGCTAAAAATAAA 57.087 29.630 0.00 0.00 0.00 1.40
2195 5043 8.635765 ACATCACAGAAGAAAGGCTAAAAATA 57.364 30.769 0.00 0.00 0.00 1.40
2196 5044 7.530426 ACATCACAGAAGAAAGGCTAAAAAT 57.470 32.000 0.00 0.00 0.00 1.82
2197 5045 6.959639 ACATCACAGAAGAAAGGCTAAAAA 57.040 33.333 0.00 0.00 0.00 1.94
2198 5046 9.905713 ATATACATCACAGAAGAAAGGCTAAAA 57.094 29.630 0.00 0.00 0.00 1.52
2199 5047 9.905713 AATATACATCACAGAAGAAAGGCTAAA 57.094 29.630 0.00 0.00 0.00 1.85
2202 5050 7.659390 GCTAATATACATCACAGAAGAAAGGCT 59.341 37.037 0.00 0.00 0.00 4.58
2224 5072 7.939039 CACCCTGAGATTTGGAAATATAGCTAA 59.061 37.037 0.00 0.00 0.00 3.09
2225 5073 7.453393 CACCCTGAGATTTGGAAATATAGCTA 58.547 38.462 0.00 0.00 0.00 3.32
2226 5074 6.302269 CACCCTGAGATTTGGAAATATAGCT 58.698 40.000 0.00 0.00 0.00 3.32
2227 5075 5.474876 CCACCCTGAGATTTGGAAATATAGC 59.525 44.000 0.00 0.00 0.00 2.97
2228 5076 6.006449 CCCACCCTGAGATTTGGAAATATAG 58.994 44.000 0.00 0.00 0.00 1.31
2229 5077 5.692781 GCCCACCCTGAGATTTGGAAATATA 60.693 44.000 0.00 0.00 0.00 0.86
2230 5078 4.808042 CCCACCCTGAGATTTGGAAATAT 58.192 43.478 0.00 0.00 0.00 1.28
2231 5079 3.627237 GCCCACCCTGAGATTTGGAAATA 60.627 47.826 0.00 0.00 0.00 1.40
2232 5080 2.889756 GCCCACCCTGAGATTTGGAAAT 60.890 50.000 0.00 0.00 0.00 2.17
2233 5081 1.549950 GCCCACCCTGAGATTTGGAAA 60.550 52.381 0.00 0.00 0.00 3.13
2234 5082 0.039618 GCCCACCCTGAGATTTGGAA 59.960 55.000 0.00 0.00 0.00 3.53
2235 5083 1.691219 GCCCACCCTGAGATTTGGA 59.309 57.895 0.00 0.00 0.00 3.53
2237 5085 0.032813 ATGGCCCACCCTGAGATTTG 60.033 55.000 0.00 0.00 33.59 2.32
2238 5086 0.032813 CATGGCCCACCCTGAGATTT 60.033 55.000 0.00 0.00 33.64 2.17
2239 5087 1.616921 CATGGCCCACCCTGAGATT 59.383 57.895 0.00 0.00 33.64 2.40
2240 5088 2.389449 CCATGGCCCACCCTGAGAT 61.389 63.158 0.00 0.00 33.64 2.75
2261 5109 3.000819 TAGAGGGTGGCCACGGTG 61.001 66.667 29.08 0.00 0.00 4.94
2262 5110 3.001406 GTAGAGGGTGGCCACGGT 61.001 66.667 29.08 18.81 0.00 4.83
2263 5111 3.782443 GGTAGAGGGTGGCCACGG 61.782 72.222 29.08 0.00 0.00 4.94
2264 5112 2.683933 AGGTAGAGGGTGGCCACG 60.684 66.667 29.08 0.00 0.00 4.94
2265 5113 2.368011 GGAGGTAGAGGGTGGCCAC 61.368 68.421 28.57 28.57 0.00 5.01
2266 5114 2.040606 GGAGGTAGAGGGTGGCCA 59.959 66.667 0.00 0.00 0.00 5.36
2267 5115 3.155167 CGGAGGTAGAGGGTGGCC 61.155 72.222 0.00 0.00 0.00 5.36
2268 5116 3.851128 GCGGAGGTAGAGGGTGGC 61.851 72.222 0.00 0.00 0.00 5.01
2269 5117 3.155167 GGCGGAGGTAGAGGGTGG 61.155 72.222 0.00 0.00 0.00 4.61
2270 5118 3.528370 CGGCGGAGGTAGAGGGTG 61.528 72.222 0.00 0.00 0.00 4.61
2273 5121 3.905678 CAGCGGCGGAGGTAGAGG 61.906 72.222 9.78 0.00 0.00 3.69
2274 5122 3.905678 CCAGCGGCGGAGGTAGAG 61.906 72.222 9.78 0.00 0.00 2.43
2287 5135 1.448717 GTCCTTCCTCTTCGCCAGC 60.449 63.158 0.00 0.00 0.00 4.85
2289 5137 0.537188 GATGTCCTTCCTCTTCGCCA 59.463 55.000 0.00 0.00 0.00 5.69
2315 5166 4.189188 CGTCGCCACCGTCCCTAG 62.189 72.222 0.00 0.00 35.54 3.02
2324 5175 1.781555 CATTGACAGTCGTCGCCAC 59.218 57.895 0.00 0.00 45.80 5.01
2325 5176 2.027073 GCATTGACAGTCGTCGCCA 61.027 57.895 0.00 0.00 45.80 5.69
2331 5182 2.681706 AGTGAAGAGCATTGACAGTCG 58.318 47.619 0.00 0.00 0.00 4.18
2332 5183 3.812053 ACAAGTGAAGAGCATTGACAGTC 59.188 43.478 0.00 0.00 0.00 3.51
2336 5187 4.314121 AGAGACAAGTGAAGAGCATTGAC 58.686 43.478 0.00 0.00 0.00 3.18
2370 5221 3.874873 CTTGATCGCAAGTCGCCA 58.125 55.556 0.00 0.00 45.10 5.69
2379 5230 3.646946 TCACATCATAGCTCTTGATCGC 58.353 45.455 8.69 0.00 31.50 4.58
2380 5231 5.118642 TCTCACATCATAGCTCTTGATCG 57.881 43.478 8.69 7.77 31.50 3.69
2408 5259 7.337184 TCGTGTCAACAAGCCCATATAAAAATA 59.663 33.333 0.00 0.00 0.00 1.40
2413 5264 4.188462 CTCGTGTCAACAAGCCCATATAA 58.812 43.478 0.00 0.00 0.00 0.98
2415 5266 2.027192 ACTCGTGTCAACAAGCCCATAT 60.027 45.455 0.00 0.00 0.00 1.78
2433 5284 3.518634 TTTCTGGTGTGCCAAAAACTC 57.481 42.857 0.00 0.00 45.51 3.01
2442 5293 5.992729 TCTTAATTACGTTTTCTGGTGTGC 58.007 37.500 0.00 0.00 0.00 4.57
2445 5296 8.943002 AGGTTATCTTAATTACGTTTTCTGGTG 58.057 33.333 0.00 0.00 0.00 4.17
2446 5297 9.511272 AAGGTTATCTTAATTACGTTTTCTGGT 57.489 29.630 0.00 0.00 33.14 4.00
2467 5318 6.941857 ACTGGACATTGTTTTGTTTAAGGTT 58.058 32.000 0.00 0.00 0.00 3.50
2476 5327 9.480053 AGATTTTTCATACTGGACATTGTTTTG 57.520 29.630 0.00 0.00 0.00 2.44
2477 5328 9.696917 GAGATTTTTCATACTGGACATTGTTTT 57.303 29.630 0.00 0.00 0.00 2.43
2483 5334 9.334947 CATACAGAGATTTTTCATACTGGACAT 57.665 33.333 0.00 0.00 0.00 3.06
2485 5336 7.770897 ACCATACAGAGATTTTTCATACTGGAC 59.229 37.037 0.00 0.00 0.00 4.02
2546 5397 1.359848 ATTTTAGCACTCCGAGCACG 58.640 50.000 0.00 0.00 39.43 5.34
2553 5404 4.120589 CCGAGTCCTAATTTTAGCACTCC 58.879 47.826 13.31 0.68 42.80 3.85
2555 5406 4.466726 ACTCCGAGTCCTAATTTTAGCACT 59.533 41.667 0.00 0.00 34.57 4.40
2561 5412 6.534079 CGAACAATACTCCGAGTCCTAATTTT 59.466 38.462 3.74 0.00 0.00 1.82
2567 5418 1.749634 CCGAACAATACTCCGAGTCCT 59.250 52.381 3.74 0.00 0.00 3.85
2570 5421 0.175073 GGCCGAACAATACTCCGAGT 59.825 55.000 6.25 6.25 0.00 4.18
2571 5422 0.870307 CGGCCGAACAATACTCCGAG 60.870 60.000 24.07 0.00 39.23 4.63
2574 5426 1.949465 AATCGGCCGAACAATACTCC 58.051 50.000 34.66 0.00 0.00 3.85
2580 5432 0.322322 AGGTGTAATCGGCCGAACAA 59.678 50.000 34.66 17.78 0.00 2.83
2582 5434 0.808847 GGAGGTGTAATCGGCCGAAC 60.809 60.000 34.66 26.76 0.00 3.95
2586 5438 0.539986 TCTTGGAGGTGTAATCGGCC 59.460 55.000 0.00 0.00 0.00 6.13
2596 5448 3.652869 TCATCTTGGAACTTCTTGGAGGT 59.347 43.478 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.