Multiple sequence alignment - TraesCS1D01G288100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G288100 chr1D 100.000 2243 0 0 1 2243 386751042 386748800 0.000000e+00 4143.0
1 TraesCS1D01G288100 chr1D 81.784 1334 116 49 562 1854 386787426 386786179 0.000000e+00 1000.0
2 TraesCS1D01G288100 chr1A 89.079 1575 101 29 523 2067 486581790 486580257 0.000000e+00 1890.0
3 TraesCS1D01G288100 chr1A 79.772 1577 147 89 365 1877 486599072 486597604 0.000000e+00 987.0
4 TraesCS1D01G288100 chr1A 92.994 157 11 0 352 508 486585290 486585134 1.730000e-56 230.0
5 TraesCS1D01G288100 chr1A 87.943 141 8 2 2103 2243 486580254 486580123 8.290000e-35 158.0
6 TraesCS1D01G288100 chr1B 86.361 1679 131 46 352 1976 520145828 520144194 0.000000e+00 1742.0
7 TraesCS1D01G288100 chr1B 84.975 1178 68 51 987 2067 520243106 520241941 0.000000e+00 1094.0
8 TraesCS1D01G288100 chr1B 81.192 973 95 37 512 1431 520277638 520276701 0.000000e+00 702.0
9 TraesCS1D01G288100 chr1B 88.235 391 21 8 575 945 520243482 520243097 5.680000e-121 444.0
10 TraesCS1D01G288100 chr1B 92.069 290 21 2 51 338 624092135 624092424 7.460000e-110 407.0
11 TraesCS1D01G288100 chr1B 88.755 249 12 6 1997 2243 520144201 520143967 7.840000e-75 291.0
12 TraesCS1D01G288100 chr1B 82.162 370 36 16 1523 1880 520276331 520275980 7.840000e-75 291.0
13 TraesCS1D01G288100 chr1B 91.803 183 11 2 360 542 520246309 520246131 3.700000e-63 252.0
14 TraesCS1D01G288100 chr1B 94.326 141 8 0 2103 2243 520241938 520241798 1.350000e-52 217.0
15 TraesCS1D01G288100 chr1B 91.781 73 6 0 1464 1536 520276694 520276622 3.940000e-18 102.0
16 TraesCS1D01G288100 chr1B 83.168 101 11 3 365 464 520280308 520280213 1.100000e-13 87.9
17 TraesCS1D01G288100 chr3D 97.345 339 6 2 1 338 484303211 484303547 6.950000e-160 573.0
18 TraesCS1D01G288100 chr7B 94.428 341 16 2 1 339 648478075 648478414 2.550000e-144 521.0
19 TraesCS1D01G288100 chr7B 89.614 337 31 4 1 334 656530170 656530505 2.060000e-115 425.0
20 TraesCS1D01G288100 chr7B 89.118 340 33 4 1 338 534010827 534011164 9.580000e-114 420.0
21 TraesCS1D01G288100 chrUn 92.941 340 22 2 1 338 50130861 50131200 5.560000e-136 494.0
22 TraesCS1D01G288100 chr3B 91.176 340 28 2 1 339 762098555 762098217 5.640000e-126 460.0
23 TraesCS1D01G288100 chr4B 89.706 340 31 4 1 338 628558727 628559064 4.430000e-117 431.0
24 TraesCS1D01G288100 chr7D 87.535 353 34 10 1 347 638363145 638362797 1.250000e-107 399.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G288100 chr1D 386748800 386751042 2242 True 4143.000000 4143 100.000000 1 2243 1 chr1D.!!$R1 2242
1 TraesCS1D01G288100 chr1D 386786179 386787426 1247 True 1000.000000 1000 81.784000 562 1854 1 chr1D.!!$R2 1292
2 TraesCS1D01G288100 chr1A 486597604 486599072 1468 True 987.000000 987 79.772000 365 1877 1 chr1A.!!$R1 1512
3 TraesCS1D01G288100 chr1A 486580123 486585290 5167 True 759.333333 1890 90.005333 352 2243 3 chr1A.!!$R2 1891
4 TraesCS1D01G288100 chr1B 520143967 520145828 1861 True 1016.500000 1742 87.558000 352 2243 2 chr1B.!!$R1 1891
5 TraesCS1D01G288100 chr1B 520241798 520246309 4511 True 501.750000 1094 89.834750 360 2243 4 chr1B.!!$R2 1883
6 TraesCS1D01G288100 chr1B 520275980 520280308 4328 True 295.725000 702 84.575750 365 1880 4 chr1B.!!$R3 1515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.034337 TGTGACCTTTAGCACGGACC 59.966 55.0 0.0 0.0 37.83 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1501 10165 0.17899 TCCCGAGATGCTAGCAGCTA 60.179 55.0 33.76 16.96 43.23 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.164258 GTGGCTGCTGTGACCTTT 57.836 55.556 0.00 0.00 0.00 3.11
18 19 3.322514 GTGGCTGCTGTGACCTTTA 57.677 52.632 0.00 0.00 0.00 1.85
19 20 1.160137 GTGGCTGCTGTGACCTTTAG 58.840 55.000 0.00 0.00 0.00 1.85
20 21 0.606401 TGGCTGCTGTGACCTTTAGC 60.606 55.000 0.00 0.00 37.93 3.09
21 22 0.606401 GGCTGCTGTGACCTTTAGCA 60.606 55.000 0.00 0.00 44.45 3.49
22 23 0.519077 GCTGCTGTGACCTTTAGCAC 59.481 55.000 0.00 0.00 42.05 4.40
23 24 0.792640 CTGCTGTGACCTTTAGCACG 59.207 55.000 0.00 0.00 42.05 5.34
24 25 0.602638 TGCTGTGACCTTTAGCACGG 60.603 55.000 0.00 0.00 42.05 4.94
25 26 0.320421 GCTGTGACCTTTAGCACGGA 60.320 55.000 0.00 0.00 42.56 4.69
26 27 1.429463 CTGTGACCTTTAGCACGGAC 58.571 55.000 0.00 0.00 42.56 4.79
27 28 0.034337 TGTGACCTTTAGCACGGACC 59.966 55.000 0.00 0.00 37.83 4.46
28 29 0.320697 GTGACCTTTAGCACGGACCT 59.679 55.000 0.00 0.00 0.00 3.85
29 30 0.320374 TGACCTTTAGCACGGACCTG 59.680 55.000 0.00 0.00 0.00 4.00
30 31 0.606604 GACCTTTAGCACGGACCTGA 59.393 55.000 0.00 0.00 0.00 3.86
31 32 1.207329 GACCTTTAGCACGGACCTGAT 59.793 52.381 0.00 0.00 0.00 2.90
32 33 1.628846 ACCTTTAGCACGGACCTGATT 59.371 47.619 0.00 0.00 0.00 2.57
33 34 2.009774 CCTTTAGCACGGACCTGATTG 58.990 52.381 0.00 0.00 0.00 2.67
34 35 1.398390 CTTTAGCACGGACCTGATTGC 59.602 52.381 0.00 0.00 35.08 3.56
35 36 0.613260 TTAGCACGGACCTGATTGCT 59.387 50.000 10.50 10.50 46.85 3.91
36 37 0.613260 TAGCACGGACCTGATTGCTT 59.387 50.000 10.82 0.00 42.74 3.91
37 38 0.250901 AGCACGGACCTGATTGCTTT 60.251 50.000 1.95 0.00 42.74 3.51
38 39 0.598065 GCACGGACCTGATTGCTTTT 59.402 50.000 0.00 0.00 32.00 2.27
39 40 1.000274 GCACGGACCTGATTGCTTTTT 60.000 47.619 0.00 0.00 32.00 1.94
40 41 2.664916 CACGGACCTGATTGCTTTTTG 58.335 47.619 0.00 0.00 0.00 2.44
41 42 1.613437 ACGGACCTGATTGCTTTTTGG 59.387 47.619 0.00 0.00 0.00 3.28
42 43 1.885887 CGGACCTGATTGCTTTTTGGA 59.114 47.619 0.00 0.00 0.00 3.53
43 44 2.295909 CGGACCTGATTGCTTTTTGGAA 59.704 45.455 0.00 0.00 0.00 3.53
44 45 3.243704 CGGACCTGATTGCTTTTTGGAAA 60.244 43.478 0.00 0.00 0.00 3.13
45 46 4.702831 GGACCTGATTGCTTTTTGGAAAA 58.297 39.130 0.00 0.00 0.00 2.29
46 47 5.122519 GGACCTGATTGCTTTTTGGAAAAA 58.877 37.500 0.00 0.00 36.53 1.94
57 58 4.335400 TTTTGGAAAAAGATGCAGGGAC 57.665 40.909 0.00 0.00 0.00 4.46
58 59 1.923356 TGGAAAAAGATGCAGGGACC 58.077 50.000 0.00 0.00 0.00 4.46
59 60 1.428912 TGGAAAAAGATGCAGGGACCT 59.571 47.619 0.00 0.00 0.00 3.85
60 61 1.821136 GGAAAAAGATGCAGGGACCTG 59.179 52.381 13.99 13.99 46.15 4.00
61 62 2.555227 GGAAAAAGATGCAGGGACCTGA 60.555 50.000 22.03 7.64 46.30 3.86
62 63 3.359950 GAAAAAGATGCAGGGACCTGAT 58.640 45.455 22.03 11.85 46.30 2.90
63 64 3.463048 AAAAGATGCAGGGACCTGATT 57.537 42.857 22.03 7.79 46.30 2.57
64 65 2.431954 AAGATGCAGGGACCTGATTG 57.568 50.000 22.03 0.00 46.30 2.67
65 66 0.106819 AGATGCAGGGACCTGATTGC 60.107 55.000 22.03 7.89 46.30 3.56
66 67 0.106819 GATGCAGGGACCTGATTGCT 60.107 55.000 22.03 0.90 46.30 3.91
67 68 0.333993 ATGCAGGGACCTGATTGCTT 59.666 50.000 22.03 2.98 46.30 3.91
68 69 0.112995 TGCAGGGACCTGATTGCTTT 59.887 50.000 22.03 0.00 46.30 3.51
69 70 1.260544 GCAGGGACCTGATTGCTTTT 58.739 50.000 22.03 0.00 46.30 2.27
70 71 1.620323 GCAGGGACCTGATTGCTTTTT 59.380 47.619 22.03 0.00 46.30 1.94
71 72 2.825532 GCAGGGACCTGATTGCTTTTTA 59.174 45.455 22.03 0.00 46.30 1.52
72 73 3.448660 GCAGGGACCTGATTGCTTTTTAT 59.551 43.478 22.03 0.00 46.30 1.40
73 74 4.644685 GCAGGGACCTGATTGCTTTTTATA 59.355 41.667 22.03 0.00 46.30 0.98
74 75 5.127031 GCAGGGACCTGATTGCTTTTTATAA 59.873 40.000 22.03 0.00 46.30 0.98
75 76 6.183360 GCAGGGACCTGATTGCTTTTTATAAT 60.183 38.462 22.03 0.00 46.30 1.28
76 77 7.014230 GCAGGGACCTGATTGCTTTTTATAATA 59.986 37.037 22.03 0.00 46.30 0.98
77 78 9.082313 CAGGGACCTGATTGCTTTTTATAATAT 57.918 33.333 13.06 0.00 46.30 1.28
78 79 9.660544 AGGGACCTGATTGCTTTTTATAATATT 57.339 29.630 0.00 0.00 0.00 1.28
101 102 4.365514 TCAGGTACCTGATTGCTTTTCA 57.634 40.909 35.91 13.84 46.80 2.69
102 103 4.326826 TCAGGTACCTGATTGCTTTTCAG 58.673 43.478 35.91 10.34 46.80 3.02
103 104 4.041567 TCAGGTACCTGATTGCTTTTCAGA 59.958 41.667 35.91 13.13 46.80 3.27
104 105 4.761739 CAGGTACCTGATTGCTTTTCAGAA 59.238 41.667 34.54 0.00 46.30 3.02
105 106 5.241506 CAGGTACCTGATTGCTTTTCAGAAA 59.758 40.000 34.54 0.00 46.30 2.52
106 107 6.012745 AGGTACCTGATTGCTTTTCAGAAAT 58.987 36.000 15.42 0.00 42.63 2.17
107 108 7.121168 CAGGTACCTGATTGCTTTTCAGAAATA 59.879 37.037 34.54 1.46 46.30 1.40
108 109 7.121315 AGGTACCTGATTGCTTTTCAGAAATAC 59.879 37.037 15.42 10.03 42.63 1.89
109 110 6.899393 ACCTGATTGCTTTTCAGAAATACA 57.101 33.333 11.22 0.00 42.63 2.29
110 111 6.681777 ACCTGATTGCTTTTCAGAAATACAC 58.318 36.000 11.22 0.00 42.63 2.90
111 112 6.491403 ACCTGATTGCTTTTCAGAAATACACT 59.509 34.615 11.22 0.00 42.63 3.55
112 113 6.805271 CCTGATTGCTTTTCAGAAATACACTG 59.195 38.462 11.22 0.00 42.63 3.66
113 114 7.308770 CCTGATTGCTTTTCAGAAATACACTGA 60.309 37.037 11.22 0.00 42.63 3.41
114 115 7.362662 TGATTGCTTTTCAGAAATACACTGAC 58.637 34.615 0.00 0.00 42.84 3.51
115 116 6.942532 TTGCTTTTCAGAAATACACTGACT 57.057 33.333 0.00 0.00 42.84 3.41
116 117 6.942532 TGCTTTTCAGAAATACACTGACTT 57.057 33.333 0.00 0.00 42.84 3.01
117 118 6.728200 TGCTTTTCAGAAATACACTGACTTG 58.272 36.000 0.00 0.00 42.84 3.16
118 119 6.318648 TGCTTTTCAGAAATACACTGACTTGT 59.681 34.615 0.00 0.00 42.84 3.16
119 120 7.497579 TGCTTTTCAGAAATACACTGACTTGTA 59.502 33.333 0.00 0.00 42.84 2.41
120 121 8.012241 GCTTTTCAGAAATACACTGACTTGTAG 58.988 37.037 0.00 0.00 42.84 2.74
121 122 7.962964 TTTCAGAAATACACTGACTTGTAGG 57.037 36.000 0.00 0.00 42.84 3.18
122 123 6.665992 TCAGAAATACACTGACTTGTAGGT 57.334 37.500 0.00 0.00 39.10 3.08
123 124 6.688578 TCAGAAATACACTGACTTGTAGGTC 58.311 40.000 0.00 0.00 39.10 3.85
124 125 5.869888 CAGAAATACACTGACTTGTAGGTCC 59.130 44.000 0.00 0.00 35.44 4.46
125 126 4.820894 AATACACTGACTTGTAGGTCCC 57.179 45.455 0.00 0.00 35.44 4.46
126 127 2.097110 ACACTGACTTGTAGGTCCCA 57.903 50.000 0.00 0.00 35.54 4.37
127 128 1.692519 ACACTGACTTGTAGGTCCCAC 59.307 52.381 0.00 0.00 35.54 4.61
128 129 1.691976 CACTGACTTGTAGGTCCCACA 59.308 52.381 0.00 0.00 35.54 4.17
129 130 2.303022 CACTGACTTGTAGGTCCCACAT 59.697 50.000 0.00 0.00 35.54 3.21
130 131 2.303022 ACTGACTTGTAGGTCCCACATG 59.697 50.000 2.37 2.37 35.54 3.21
131 132 1.003118 TGACTTGTAGGTCCCACATGC 59.997 52.381 3.65 0.00 35.54 4.06
132 133 0.328258 ACTTGTAGGTCCCACATGCC 59.672 55.000 3.65 0.00 0.00 4.40
133 134 0.327924 CTTGTAGGTCCCACATGCCA 59.672 55.000 0.00 0.00 0.00 4.92
134 135 0.327924 TTGTAGGTCCCACATGCCAG 59.672 55.000 0.00 0.00 0.00 4.85
135 136 0.840288 TGTAGGTCCCACATGCCAGT 60.840 55.000 0.00 0.00 0.00 4.00
136 137 0.328258 GTAGGTCCCACATGCCAGTT 59.672 55.000 0.00 0.00 0.00 3.16
137 138 1.557832 GTAGGTCCCACATGCCAGTTA 59.442 52.381 0.00 0.00 0.00 2.24
138 139 1.072266 AGGTCCCACATGCCAGTTAA 58.928 50.000 0.00 0.00 0.00 2.01
139 140 1.173913 GGTCCCACATGCCAGTTAAC 58.826 55.000 0.00 0.00 0.00 2.01
140 141 0.802494 GTCCCACATGCCAGTTAACG 59.198 55.000 0.00 0.00 0.00 3.18
141 142 0.322098 TCCCACATGCCAGTTAACGG 60.322 55.000 10.85 10.85 0.00 4.44
142 143 0.608035 CCCACATGCCAGTTAACGGT 60.608 55.000 14.94 0.00 0.00 4.83
143 144 0.802494 CCACATGCCAGTTAACGGTC 59.198 55.000 14.94 0.00 0.00 4.79
144 145 1.518325 CACATGCCAGTTAACGGTCA 58.482 50.000 14.94 5.31 0.00 4.02
145 146 1.876799 CACATGCCAGTTAACGGTCAA 59.123 47.619 14.94 5.32 0.00 3.18
146 147 2.292016 CACATGCCAGTTAACGGTCAAA 59.708 45.455 14.94 3.49 0.00 2.69
147 148 2.292292 ACATGCCAGTTAACGGTCAAAC 59.708 45.455 14.94 0.00 0.00 2.93
148 149 2.335316 TGCCAGTTAACGGTCAAACT 57.665 45.000 14.94 3.69 36.38 2.66
149 150 3.472283 TGCCAGTTAACGGTCAAACTA 57.528 42.857 14.94 0.00 34.23 2.24
150 151 3.806380 TGCCAGTTAACGGTCAAACTAA 58.194 40.909 14.94 0.00 34.23 2.24
151 152 3.560896 TGCCAGTTAACGGTCAAACTAAC 59.439 43.478 14.94 1.19 34.23 2.34
152 153 3.363280 GCCAGTTAACGGTCAAACTAACG 60.363 47.826 14.94 0.00 34.23 3.18
153 154 3.184986 CCAGTTAACGGTCAAACTAACGG 59.815 47.826 5.02 2.02 34.23 4.44
154 155 3.803778 CAGTTAACGGTCAAACTAACGGT 59.196 43.478 8.09 0.00 34.23 4.83
155 156 4.051237 AGTTAACGGTCAAACTAACGGTC 58.949 43.478 0.00 0.00 34.23 4.79
156 157 2.600470 AACGGTCAAACTAACGGTCA 57.400 45.000 0.00 0.00 30.82 4.02
157 158 2.600470 ACGGTCAAACTAACGGTCAA 57.400 45.000 0.00 0.00 0.00 3.18
158 159 2.903798 ACGGTCAAACTAACGGTCAAA 58.096 42.857 0.00 0.00 0.00 2.69
159 160 3.469739 ACGGTCAAACTAACGGTCAAAT 58.530 40.909 0.00 0.00 0.00 2.32
160 161 4.630111 ACGGTCAAACTAACGGTCAAATA 58.370 39.130 0.00 0.00 0.00 1.40
161 162 5.055812 ACGGTCAAACTAACGGTCAAATAA 58.944 37.500 0.00 0.00 0.00 1.40
162 163 5.702209 ACGGTCAAACTAACGGTCAAATAAT 59.298 36.000 0.00 0.00 0.00 1.28
163 164 6.205270 ACGGTCAAACTAACGGTCAAATAATT 59.795 34.615 0.00 0.00 0.00 1.40
164 165 7.387397 ACGGTCAAACTAACGGTCAAATAATTA 59.613 33.333 0.00 0.00 0.00 1.40
165 166 7.901377 CGGTCAAACTAACGGTCAAATAATTAG 59.099 37.037 0.00 0.00 0.00 1.73
166 167 8.938906 GGTCAAACTAACGGTCAAATAATTAGA 58.061 33.333 0.00 0.00 0.00 2.10
167 168 9.968743 GTCAAACTAACGGTCAAATAATTAGAG 57.031 33.333 0.00 0.00 0.00 2.43
168 169 8.662141 TCAAACTAACGGTCAAATAATTAGAGC 58.338 33.333 0.00 0.00 0.00 4.09
169 170 8.665685 CAAACTAACGGTCAAATAATTAGAGCT 58.334 33.333 0.00 0.00 0.00 4.09
170 171 8.421673 AACTAACGGTCAAATAATTAGAGCTC 57.578 34.615 5.27 5.27 0.00 4.09
171 172 7.783042 ACTAACGGTCAAATAATTAGAGCTCT 58.217 34.615 22.17 22.17 0.00 4.09
172 173 8.910944 ACTAACGGTCAAATAATTAGAGCTCTA 58.089 33.333 19.72 19.72 0.00 2.43
173 174 9.745880 CTAACGGTCAAATAATTAGAGCTCTAA 57.254 33.333 32.65 32.65 42.04 2.10
174 175 8.421673 AACGGTCAAATAATTAGAGCTCTAAC 57.578 34.615 33.09 20.35 40.81 2.34
175 176 6.696148 ACGGTCAAATAATTAGAGCTCTAACG 59.304 38.462 33.09 27.89 40.81 3.18
176 177 6.345882 CGGTCAAATAATTAGAGCTCTAACGC 60.346 42.308 33.09 17.75 40.81 4.84
177 178 6.479001 GGTCAAATAATTAGAGCTCTAACGCA 59.521 38.462 33.09 22.21 40.81 5.24
178 179 7.171678 GGTCAAATAATTAGAGCTCTAACGCAT 59.828 37.037 33.09 23.21 40.81 4.73
179 180 8.006590 GTCAAATAATTAGAGCTCTAACGCATG 58.993 37.037 33.09 25.84 40.81 4.06
180 181 7.171508 TCAAATAATTAGAGCTCTAACGCATGG 59.828 37.037 33.09 22.02 40.81 3.66
181 182 2.890808 TTAGAGCTCTAACGCATGGG 57.109 50.000 28.47 8.44 33.83 4.00
182 183 0.389391 TAGAGCTCTAACGCATGGGC 59.611 55.000 21.26 0.00 0.00 5.36
183 184 1.889573 GAGCTCTAACGCATGGGCC 60.890 63.158 10.10 0.00 36.38 5.80
184 185 2.902343 GCTCTAACGCATGGGCCC 60.902 66.667 17.59 17.59 36.38 5.80
185 186 2.589540 CTCTAACGCATGGGCCCA 59.410 61.111 30.92 30.92 36.38 5.36
186 187 1.077787 CTCTAACGCATGGGCCCAA 60.078 57.895 32.58 13.16 36.38 4.12
187 188 1.376609 CTCTAACGCATGGGCCCAAC 61.377 60.000 32.58 23.30 36.38 3.77
188 189 1.378514 CTAACGCATGGGCCCAACT 60.379 57.895 32.58 11.29 36.38 3.16
189 190 1.656818 CTAACGCATGGGCCCAACTG 61.657 60.000 32.58 25.16 36.38 3.16
190 191 2.419011 TAACGCATGGGCCCAACTGT 62.419 55.000 32.58 23.76 36.38 3.55
191 192 3.443045 CGCATGGGCCCAACTGTC 61.443 66.667 32.58 17.69 36.38 3.51
192 193 2.283101 GCATGGGCCCAACTGTCA 60.283 61.111 32.58 2.38 0.00 3.58
193 194 1.683365 GCATGGGCCCAACTGTCAT 60.683 57.895 32.58 7.43 0.00 3.06
194 195 0.395586 GCATGGGCCCAACTGTCATA 60.396 55.000 32.58 0.43 0.00 2.15
195 196 1.959508 GCATGGGCCCAACTGTCATAA 60.960 52.381 32.58 0.00 0.00 1.90
196 197 2.669781 CATGGGCCCAACTGTCATAAT 58.330 47.619 32.58 4.59 0.00 1.28
197 198 2.435372 TGGGCCCAACTGTCATAATC 57.565 50.000 26.33 0.00 0.00 1.75
198 199 1.638070 TGGGCCCAACTGTCATAATCA 59.362 47.619 26.33 0.00 0.00 2.57
199 200 2.024414 GGGCCCAACTGTCATAATCAC 58.976 52.381 19.95 0.00 0.00 3.06
200 201 1.670811 GGCCCAACTGTCATAATCACG 59.329 52.381 0.00 0.00 0.00 4.35
201 202 2.627945 GCCCAACTGTCATAATCACGA 58.372 47.619 0.00 0.00 0.00 4.35
202 203 3.206150 GCCCAACTGTCATAATCACGAT 58.794 45.455 0.00 0.00 0.00 3.73
203 204 3.627577 GCCCAACTGTCATAATCACGATT 59.372 43.478 0.00 0.00 34.93 3.34
204 205 4.814234 GCCCAACTGTCATAATCACGATTA 59.186 41.667 2.12 2.12 37.64 1.75
205 206 5.295787 GCCCAACTGTCATAATCACGATTAA 59.704 40.000 3.71 0.00 36.90 1.40
206 207 6.017109 GCCCAACTGTCATAATCACGATTAAT 60.017 38.462 3.71 0.00 36.90 1.40
207 208 7.468631 GCCCAACTGTCATAATCACGATTAATT 60.469 37.037 3.71 0.00 36.90 1.40
208 209 7.857389 CCCAACTGTCATAATCACGATTAATTG 59.143 37.037 3.71 0.78 36.90 2.32
209 210 8.397906 CCAACTGTCATAATCACGATTAATTGT 58.602 33.333 2.21 2.21 36.90 2.71
220 221 9.825972 AATCACGATTAATTGTAAAACACTCTG 57.174 29.630 8.05 0.00 0.00 3.35
221 222 8.373048 TCACGATTAATTGTAAAACACTCTGT 57.627 30.769 8.05 0.00 0.00 3.41
222 223 8.492748 TCACGATTAATTGTAAAACACTCTGTC 58.507 33.333 8.05 0.00 0.00 3.51
223 224 8.279800 CACGATTAATTGTAAAACACTCTGTCA 58.720 33.333 8.05 0.00 0.00 3.58
224 225 8.280497 ACGATTAATTGTAAAACACTCTGTCAC 58.720 33.333 6.55 0.00 0.00 3.67
225 226 7.744715 CGATTAATTGTAAAACACTCTGTCACC 59.255 37.037 0.00 0.00 0.00 4.02
226 227 7.867305 TTAATTGTAAAACACTCTGTCACCA 57.133 32.000 0.00 0.00 0.00 4.17
227 228 6.377327 AATTGTAAAACACTCTGTCACCAG 57.623 37.500 0.00 0.00 40.25 4.00
228 229 3.804036 TGTAAAACACTCTGTCACCAGG 58.196 45.455 0.00 0.00 39.31 4.45
229 230 2.348411 AAAACACTCTGTCACCAGGG 57.652 50.000 0.00 0.00 45.33 4.45
249 250 3.928343 TTTTTGAAACAGCCGACCG 57.072 47.368 0.00 0.00 0.00 4.79
250 251 0.248702 TTTTTGAAACAGCCGACCGC 60.249 50.000 0.00 0.00 37.98 5.68
251 252 2.065906 TTTTGAAACAGCCGACCGCC 62.066 55.000 0.00 0.00 38.78 6.13
254 255 4.344865 AAACAGCCGACCGCCCAT 62.345 61.111 0.00 0.00 38.78 4.00
255 256 3.860930 AAACAGCCGACCGCCCATT 62.861 57.895 0.00 0.00 38.78 3.16
256 257 3.860930 AACAGCCGACCGCCCATTT 62.861 57.895 0.00 0.00 38.78 2.32
257 258 3.814268 CAGCCGACCGCCCATTTG 61.814 66.667 0.00 0.00 38.78 2.32
260 261 2.269562 CCGACCGCCCATTTGGTA 59.730 61.111 0.00 0.00 38.99 3.25
261 262 1.817941 CCGACCGCCCATTTGGTAG 60.818 63.158 0.00 0.00 38.99 3.18
262 263 1.078708 CGACCGCCCATTTGGTAGT 60.079 57.895 0.00 0.00 38.99 2.73
263 264 0.675522 CGACCGCCCATTTGGTAGTT 60.676 55.000 0.00 0.00 38.99 2.24
264 265 1.405797 CGACCGCCCATTTGGTAGTTA 60.406 52.381 0.00 0.00 38.99 2.24
265 266 2.743838 CGACCGCCCATTTGGTAGTTAT 60.744 50.000 0.00 0.00 38.99 1.89
266 267 2.876550 GACCGCCCATTTGGTAGTTATC 59.123 50.000 0.00 0.00 38.99 1.75
267 268 2.508300 ACCGCCCATTTGGTAGTTATCT 59.492 45.455 0.00 0.00 36.50 1.98
268 269 2.878406 CCGCCCATTTGGTAGTTATCTG 59.122 50.000 0.00 0.00 36.04 2.90
269 270 3.433031 CCGCCCATTTGGTAGTTATCTGA 60.433 47.826 0.00 0.00 36.04 3.27
270 271 3.809832 CGCCCATTTGGTAGTTATCTGAG 59.190 47.826 0.00 0.00 36.04 3.35
271 272 4.442893 CGCCCATTTGGTAGTTATCTGAGA 60.443 45.833 0.00 0.00 36.04 3.27
272 273 5.437060 GCCCATTTGGTAGTTATCTGAGAA 58.563 41.667 0.00 0.00 36.04 2.87
273 274 5.885912 GCCCATTTGGTAGTTATCTGAGAAA 59.114 40.000 0.00 0.00 36.04 2.52
274 275 6.377146 GCCCATTTGGTAGTTATCTGAGAAAA 59.623 38.462 0.00 0.00 36.04 2.29
275 276 7.093945 GCCCATTTGGTAGTTATCTGAGAAAAA 60.094 37.037 0.00 0.00 36.04 1.94
276 277 8.971073 CCCATTTGGTAGTTATCTGAGAAAAAT 58.029 33.333 0.00 0.00 0.00 1.82
286 287 9.908152 AGTTATCTGAGAAAAATTAAAAACCGG 57.092 29.630 0.00 0.00 0.00 5.28
287 288 9.687210 GTTATCTGAGAAAAATTAAAAACCGGT 57.313 29.630 0.00 0.00 0.00 5.28
290 291 8.454570 TCTGAGAAAAATTAAAAACCGGTAGT 57.545 30.769 8.00 0.00 0.00 2.73
291 292 8.905850 TCTGAGAAAAATTAAAAACCGGTAGTT 58.094 29.630 8.00 7.82 41.81 2.24
314 315 6.399639 TTTTTGAAACCCTAGCCTGTAAAG 57.600 37.500 0.00 0.00 0.00 1.85
315 316 4.717279 TTGAAACCCTAGCCTGTAAAGT 57.283 40.909 0.00 0.00 0.00 2.66
316 317 5.829062 TTGAAACCCTAGCCTGTAAAGTA 57.171 39.130 0.00 0.00 0.00 2.24
317 318 5.416271 TGAAACCCTAGCCTGTAAAGTAG 57.584 43.478 0.00 0.00 0.00 2.57
318 319 4.842380 TGAAACCCTAGCCTGTAAAGTAGT 59.158 41.667 0.00 0.00 0.00 2.73
319 320 6.018469 TGAAACCCTAGCCTGTAAAGTAGTA 58.982 40.000 0.00 0.00 0.00 1.82
320 321 6.154021 TGAAACCCTAGCCTGTAAAGTAGTAG 59.846 42.308 0.00 0.00 0.00 2.57
321 322 5.204131 ACCCTAGCCTGTAAAGTAGTAGT 57.796 43.478 0.00 0.00 0.00 2.73
322 323 5.587861 ACCCTAGCCTGTAAAGTAGTAGTT 58.412 41.667 0.00 0.00 0.00 2.24
323 324 6.021672 ACCCTAGCCTGTAAAGTAGTAGTTT 58.978 40.000 8.04 8.04 0.00 2.66
324 325 6.499699 ACCCTAGCCTGTAAAGTAGTAGTTTT 59.500 38.462 8.25 0.00 0.00 2.43
325 326 7.675619 ACCCTAGCCTGTAAAGTAGTAGTTTTA 59.324 37.037 8.25 0.00 0.00 1.52
326 327 8.702819 CCCTAGCCTGTAAAGTAGTAGTTTTAT 58.297 37.037 8.25 0.00 0.00 1.40
327 328 9.530633 CCTAGCCTGTAAAGTAGTAGTTTTATG 57.469 37.037 8.25 0.29 0.00 1.90
328 329 7.845066 AGCCTGTAAAGTAGTAGTTTTATGC 57.155 36.000 8.25 7.22 0.00 3.14
329 330 7.621796 AGCCTGTAAAGTAGTAGTTTTATGCT 58.378 34.615 8.25 8.97 0.00 3.79
330 331 8.755977 AGCCTGTAAAGTAGTAGTTTTATGCTA 58.244 33.333 8.25 0.00 0.00 3.49
331 332 9.543783 GCCTGTAAAGTAGTAGTTTTATGCTAT 57.456 33.333 8.25 0.00 0.00 2.97
341 342 8.576936 AGTAGTTTTATGCTATTTACTCTCGC 57.423 34.615 0.00 0.00 0.00 5.03
342 343 8.195436 AGTAGTTTTATGCTATTTACTCTCGCA 58.805 33.333 0.00 0.00 34.83 5.10
343 344 7.235430 AGTTTTATGCTATTTACTCTCGCAC 57.765 36.000 0.00 0.00 32.94 5.34
344 345 6.258068 AGTTTTATGCTATTTACTCTCGCACC 59.742 38.462 0.00 0.00 32.94 5.01
345 346 5.531122 TTATGCTATTTACTCTCGCACCT 57.469 39.130 0.00 0.00 32.94 4.00
346 347 6.644248 TTATGCTATTTACTCTCGCACCTA 57.356 37.500 0.00 0.00 32.94 3.08
347 348 4.303086 TGCTATTTACTCTCGCACCTAC 57.697 45.455 0.00 0.00 0.00 3.18
348 349 3.242969 TGCTATTTACTCTCGCACCTACG 60.243 47.826 0.00 0.00 0.00 3.51
349 350 3.243002 GCTATTTACTCTCGCACCTACGT 60.243 47.826 0.00 0.00 0.00 3.57
350 351 4.024556 GCTATTTACTCTCGCACCTACGTA 60.025 45.833 0.00 0.00 0.00 3.57
354 355 2.548875 ACTCTCGCACCTACGTACTAG 58.451 52.381 0.00 0.00 0.00 2.57
357 358 3.711086 TCTCGCACCTACGTACTAGTAG 58.289 50.000 1.87 0.00 42.67 2.57
454 458 0.746063 CACTTGGTGGCAAGAAAGCA 59.254 50.000 0.00 0.00 36.16 3.91
504 3019 1.532868 CGATCCCGCAGATTTTGATCC 59.467 52.381 0.00 0.00 34.42 3.36
553 6397 2.155194 CGACTTGGCGAGCGAGAAG 61.155 63.158 11.55 0.00 0.00 2.85
573 9060 0.454600 GCGATACGTCTCCAGGTTCA 59.545 55.000 0.00 0.00 0.00 3.18
590 9078 3.191371 GGTTCATTCGAGAAACCTTGCAT 59.809 43.478 14.84 0.00 0.00 3.96
701 9212 4.093703 CCAAAATTTAGATGTGGACGCGTA 59.906 41.667 13.97 0.00 0.00 4.42
882 9431 1.067749 CCATCGCTCTGCTCTCTGG 59.932 63.158 0.00 0.00 0.00 3.86
883 9432 1.067749 CATCGCTCTGCTCTCTGGG 59.932 63.158 0.00 0.00 0.00 4.45
986 9538 2.837291 CTCCCTGCCCTCCTCTCG 60.837 72.222 0.00 0.00 0.00 4.04
1312 9945 0.165727 TGCTCATTTTAGTGCACGCG 59.834 50.000 12.01 3.53 33.56 6.01
1338 9971 2.158943 AGGCCGGAGCAAAATACTACTC 60.159 50.000 5.05 0.00 42.56 2.59
1371 10020 3.000872 TGTTATAAATTTCCGTCGCGTCG 60.001 43.478 18.65 18.65 0.00 5.12
1419 10075 3.181496 GCCTTATTTGAGGTAGCAACTGC 60.181 47.826 0.00 0.00 39.11 4.40
1441 10097 4.541705 CTCTCTCCATCCCTAGTTTCTGA 58.458 47.826 0.00 0.00 0.00 3.27
1462 10118 0.832135 TCTTGAGCTGGGTCCGTCTT 60.832 55.000 0.00 0.00 0.00 3.01
1477 10133 1.734465 CGTCTTGGTGATCTTCTTGCC 59.266 52.381 0.00 0.00 0.00 4.52
1482 10146 1.372087 GGTGATCTTCTTGCCGCTGG 61.372 60.000 0.00 0.00 0.00 4.85
1484 10148 0.036732 TGATCTTCTTGCCGCTGGTT 59.963 50.000 0.00 0.00 0.00 3.67
1501 10165 2.291282 TGGTTGTTGGTGGTGAAGTCTT 60.291 45.455 0.00 0.00 0.00 3.01
1530 10196 0.391130 CATCTCGGGAGGTTGCGAAA 60.391 55.000 0.00 0.00 0.00 3.46
1582 10553 0.869454 GCTGCGTCTTCATCTCCTCG 60.869 60.000 0.00 0.00 0.00 4.63
1709 10700 2.292569 TCAGCGAGTATTATGGTCCGAC 59.707 50.000 0.00 0.00 0.00 4.79
1715 10706 1.959282 GTATTATGGTCCGACCCGTCT 59.041 52.381 15.24 0.55 37.50 4.18
1756 10755 5.045869 TCCTAGTATTGTGGTTCCCTTCTTG 60.046 44.000 0.00 0.00 0.00 3.02
1757 10756 4.724279 AGTATTGTGGTTCCCTTCTTGT 57.276 40.909 0.00 0.00 0.00 3.16
1758 10757 4.398319 AGTATTGTGGTTCCCTTCTTGTG 58.602 43.478 0.00 0.00 0.00 3.33
1759 10758 3.593442 ATTGTGGTTCCCTTCTTGTGA 57.407 42.857 0.00 0.00 0.00 3.58
1762 10761 3.909732 TGTGGTTCCCTTCTTGTGAAAT 58.090 40.909 0.00 0.00 0.00 2.17
1763 10762 3.888930 TGTGGTTCCCTTCTTGTGAAATC 59.111 43.478 0.00 0.00 0.00 2.17
1764 10763 3.888930 GTGGTTCCCTTCTTGTGAAATCA 59.111 43.478 0.00 0.00 0.00 2.57
1892 10927 3.006217 ACCTCTGCATTTCCTTTTTGAGC 59.994 43.478 0.00 0.00 0.00 4.26
1976 11011 2.854805 GCCGCAAGATAAAAATCGCTCC 60.855 50.000 0.00 0.00 43.02 4.70
2081 11118 5.018539 ACGAAGCAAGTGCACCTATAATA 57.981 39.130 14.63 0.00 45.16 0.98
2082 11119 5.424757 ACGAAGCAAGTGCACCTATAATAA 58.575 37.500 14.63 0.00 45.16 1.40
2083 11120 5.878116 ACGAAGCAAGTGCACCTATAATAAA 59.122 36.000 14.63 0.00 45.16 1.40
2084 11121 6.373216 ACGAAGCAAGTGCACCTATAATAAAA 59.627 34.615 14.63 0.00 45.16 1.52
2085 11122 7.067008 ACGAAGCAAGTGCACCTATAATAAAAT 59.933 33.333 14.63 0.00 45.16 1.82
2086 11123 8.556194 CGAAGCAAGTGCACCTATAATAAAATA 58.444 33.333 14.63 0.00 45.16 1.40
2113 11150 0.669318 TTCTTACGGTTGGCGCTCAG 60.669 55.000 7.64 1.81 0.00 3.35
2137 11174 4.162320 GTCTTAATCCATCTCCCACAGACA 59.838 45.833 0.00 0.00 32.26 3.41
2138 11175 4.782691 TCTTAATCCATCTCCCACAGACAA 59.217 41.667 0.00 0.00 32.26 3.18
2161 11198 2.224402 GCTTGTCCAAGTCAAGTCTCCT 60.224 50.000 8.69 0.00 42.67 3.69
2162 11199 3.658709 CTTGTCCAAGTCAAGTCTCCTC 58.341 50.000 0.00 0.00 37.90 3.71
2186 11224 1.200716 CAATCAACTTGCTGCCGATGT 59.799 47.619 0.00 0.00 0.00 3.06
2195 11241 1.508088 CTGCCGATGTCAAAAGCCC 59.492 57.895 0.00 0.00 0.00 5.19
2196 11242 1.228398 TGCCGATGTCAAAAGCCCA 60.228 52.632 0.00 0.00 0.00 5.36
2197 11243 0.825425 TGCCGATGTCAAAAGCCCAA 60.825 50.000 0.00 0.00 0.00 4.12
2198 11244 0.316841 GCCGATGTCAAAAGCCCAAA 59.683 50.000 0.00 0.00 0.00 3.28
2199 11245 1.270041 GCCGATGTCAAAAGCCCAAAA 60.270 47.619 0.00 0.00 0.00 2.44
2200 11246 2.676076 CCGATGTCAAAAGCCCAAAAG 58.324 47.619 0.00 0.00 0.00 2.27
2201 11247 2.061028 CGATGTCAAAAGCCCAAAAGC 58.939 47.619 0.00 0.00 0.00 3.51
2202 11248 2.416747 GATGTCAAAAGCCCAAAAGCC 58.583 47.619 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.606401 TGCTAAAGGTCACAGCAGCC 60.606 55.000 0.00 0.00 40.26 4.85
3 4 0.519077 GTGCTAAAGGTCACAGCAGC 59.481 55.000 0.00 0.00 45.41 5.25
4 5 0.792640 CGTGCTAAAGGTCACAGCAG 59.207 55.000 0.00 0.00 45.41 4.24
5 6 0.602638 CCGTGCTAAAGGTCACAGCA 60.603 55.000 0.00 0.00 42.77 4.41
6 7 0.320421 TCCGTGCTAAAGGTCACAGC 60.320 55.000 0.00 0.00 35.82 4.40
7 8 1.429463 GTCCGTGCTAAAGGTCACAG 58.571 55.000 0.00 0.00 33.03 3.66
8 9 0.034337 GGTCCGTGCTAAAGGTCACA 59.966 55.000 0.00 0.00 33.03 3.58
9 10 0.320697 AGGTCCGTGCTAAAGGTCAC 59.679 55.000 0.00 0.00 0.00 3.67
10 11 0.320374 CAGGTCCGTGCTAAAGGTCA 59.680 55.000 0.00 0.00 0.00 4.02
11 12 0.606604 TCAGGTCCGTGCTAAAGGTC 59.393 55.000 0.00 0.00 0.00 3.85
12 13 1.276622 ATCAGGTCCGTGCTAAAGGT 58.723 50.000 0.00 0.00 0.00 3.50
13 14 2.009774 CAATCAGGTCCGTGCTAAAGG 58.990 52.381 0.00 0.00 0.00 3.11
14 15 1.398390 GCAATCAGGTCCGTGCTAAAG 59.602 52.381 3.48 0.00 34.13 1.85
15 16 1.003118 AGCAATCAGGTCCGTGCTAAA 59.997 47.619 9.75 0.00 45.26 1.85
16 17 0.613260 AGCAATCAGGTCCGTGCTAA 59.387 50.000 9.75 0.00 45.26 3.09
17 18 0.613260 AAGCAATCAGGTCCGTGCTA 59.387 50.000 11.31 0.00 46.34 3.49
18 19 3.072476 AGCAATCAGGTCCGTGCT 58.928 55.556 6.59 6.59 42.40 4.40
19 20 0.598065 AAAAGCAATCAGGTCCGTGC 59.402 50.000 2.68 2.68 37.26 5.34
20 21 2.607771 CCAAAAAGCAATCAGGTCCGTG 60.608 50.000 0.00 0.00 0.00 4.94
21 22 1.613437 CCAAAAAGCAATCAGGTCCGT 59.387 47.619 0.00 0.00 0.00 4.69
22 23 1.885887 TCCAAAAAGCAATCAGGTCCG 59.114 47.619 0.00 0.00 0.00 4.79
23 24 4.335400 TTTCCAAAAAGCAATCAGGTCC 57.665 40.909 0.00 0.00 0.00 4.46
24 25 6.291067 CTTTTTCCAAAAAGCAATCAGGTC 57.709 37.500 10.76 0.00 45.59 3.85
35 36 4.444164 GGTCCCTGCATCTTTTTCCAAAAA 60.444 41.667 0.00 0.00 36.53 1.94
36 37 3.070878 GGTCCCTGCATCTTTTTCCAAAA 59.929 43.478 0.00 0.00 0.00 2.44
37 38 2.632512 GGTCCCTGCATCTTTTTCCAAA 59.367 45.455 0.00 0.00 0.00 3.28
38 39 2.158325 AGGTCCCTGCATCTTTTTCCAA 60.158 45.455 0.00 0.00 0.00 3.53
39 40 1.428912 AGGTCCCTGCATCTTTTTCCA 59.571 47.619 0.00 0.00 0.00 3.53
40 41 1.821136 CAGGTCCCTGCATCTTTTTCC 59.179 52.381 0.00 0.00 37.24 3.13
41 42 2.795329 TCAGGTCCCTGCATCTTTTTC 58.205 47.619 8.53 0.00 43.31 2.29
42 43 2.978156 TCAGGTCCCTGCATCTTTTT 57.022 45.000 8.53 0.00 43.31 1.94
43 44 3.094572 CAATCAGGTCCCTGCATCTTTT 58.905 45.455 8.53 0.00 43.31 2.27
44 45 2.731572 CAATCAGGTCCCTGCATCTTT 58.268 47.619 8.53 0.00 43.31 2.52
45 46 1.684248 GCAATCAGGTCCCTGCATCTT 60.684 52.381 8.53 0.00 43.31 2.40
46 47 0.106819 GCAATCAGGTCCCTGCATCT 60.107 55.000 8.53 0.00 43.31 2.90
47 48 0.106819 AGCAATCAGGTCCCTGCATC 60.107 55.000 8.53 0.00 43.31 3.91
48 49 0.333993 AAGCAATCAGGTCCCTGCAT 59.666 50.000 8.53 1.11 43.31 3.96
49 50 0.112995 AAAGCAATCAGGTCCCTGCA 59.887 50.000 8.53 0.00 43.31 4.41
50 51 1.260544 AAAAGCAATCAGGTCCCTGC 58.739 50.000 8.53 0.00 43.31 4.85
51 52 6.773976 TTATAAAAAGCAATCAGGTCCCTG 57.226 37.500 7.02 7.02 44.86 4.45
52 53 9.660544 AATATTATAAAAAGCAATCAGGTCCCT 57.339 29.630 0.00 0.00 0.00 4.20
81 82 4.326826 TCTGAAAAGCAATCAGGTACCTG 58.673 43.478 32.61 32.61 43.58 4.00
82 83 4.640771 TCTGAAAAGCAATCAGGTACCT 57.359 40.909 9.21 9.21 43.58 3.08
83 84 5.705609 TTTCTGAAAAGCAATCAGGTACC 57.294 39.130 2.73 2.73 43.58 3.34
84 85 7.750903 GTGTATTTCTGAAAAGCAATCAGGTAC 59.249 37.037 6.95 12.05 43.58 3.34
85 86 7.665559 AGTGTATTTCTGAAAAGCAATCAGGTA 59.334 33.333 6.95 3.45 43.58 3.08
86 87 6.491403 AGTGTATTTCTGAAAAGCAATCAGGT 59.509 34.615 6.95 4.02 43.58 4.00
87 88 6.805271 CAGTGTATTTCTGAAAAGCAATCAGG 59.195 38.462 6.95 0.00 43.58 3.86
88 89 7.536622 GTCAGTGTATTTCTGAAAAGCAATCAG 59.463 37.037 6.95 6.99 42.42 2.90
89 90 7.229306 AGTCAGTGTATTTCTGAAAAGCAATCA 59.771 33.333 6.95 0.00 42.42 2.57
90 91 7.588512 AGTCAGTGTATTTCTGAAAAGCAATC 58.411 34.615 6.95 0.00 42.42 2.67
91 92 7.516198 AGTCAGTGTATTTCTGAAAAGCAAT 57.484 32.000 6.95 5.80 42.42 3.56
92 93 6.942532 AGTCAGTGTATTTCTGAAAAGCAA 57.057 33.333 6.95 0.00 42.42 3.91
93 94 6.318648 ACAAGTCAGTGTATTTCTGAAAAGCA 59.681 34.615 6.95 6.43 42.42 3.91
94 95 6.729187 ACAAGTCAGTGTATTTCTGAAAAGC 58.271 36.000 6.95 3.94 42.42 3.51
95 96 8.499162 CCTACAAGTCAGTGTATTTCTGAAAAG 58.501 37.037 6.95 0.00 42.42 2.27
96 97 7.990886 ACCTACAAGTCAGTGTATTTCTGAAAA 59.009 33.333 6.95 0.00 42.42 2.29
97 98 7.506114 ACCTACAAGTCAGTGTATTTCTGAAA 58.494 34.615 5.15 5.15 42.42 2.69
98 99 7.062749 ACCTACAAGTCAGTGTATTTCTGAA 57.937 36.000 0.00 0.00 42.42 3.02
99 100 6.295123 GGACCTACAAGTCAGTGTATTTCTGA 60.295 42.308 0.00 0.00 38.59 3.27
100 101 5.869888 GGACCTACAAGTCAGTGTATTTCTG 59.130 44.000 0.00 0.00 38.59 3.02
101 102 5.046520 GGGACCTACAAGTCAGTGTATTTCT 60.047 44.000 0.00 0.00 38.59 2.52
102 103 5.176592 GGGACCTACAAGTCAGTGTATTTC 58.823 45.833 0.00 0.00 38.59 2.17
103 104 4.595781 TGGGACCTACAAGTCAGTGTATTT 59.404 41.667 0.00 0.00 38.59 1.40
104 105 4.020485 GTGGGACCTACAAGTCAGTGTATT 60.020 45.833 2.55 0.00 38.59 1.89
105 106 3.514309 GTGGGACCTACAAGTCAGTGTAT 59.486 47.826 2.55 0.00 38.59 2.29
106 107 2.895404 GTGGGACCTACAAGTCAGTGTA 59.105 50.000 2.55 0.00 38.59 2.90
107 108 1.692519 GTGGGACCTACAAGTCAGTGT 59.307 52.381 2.55 0.00 38.59 3.55
108 109 1.691976 TGTGGGACCTACAAGTCAGTG 59.308 52.381 8.45 0.00 38.59 3.66
109 110 2.097110 TGTGGGACCTACAAGTCAGT 57.903 50.000 8.45 0.00 38.59 3.41
110 111 2.936993 GCATGTGGGACCTACAAGTCAG 60.937 54.545 15.35 4.39 38.59 3.51
111 112 1.003118 GCATGTGGGACCTACAAGTCA 59.997 52.381 15.35 0.00 38.59 3.41
112 113 1.679032 GGCATGTGGGACCTACAAGTC 60.679 57.143 15.35 8.51 35.95 3.01
113 114 0.328258 GGCATGTGGGACCTACAAGT 59.672 55.000 15.35 0.00 0.00 3.16
114 115 0.327924 TGGCATGTGGGACCTACAAG 59.672 55.000 15.35 11.81 0.00 3.16
115 116 0.327924 CTGGCATGTGGGACCTACAA 59.672 55.000 15.35 0.00 0.00 2.41
116 117 0.840288 ACTGGCATGTGGGACCTACA 60.840 55.000 13.67 13.67 0.00 2.74
117 118 0.328258 AACTGGCATGTGGGACCTAC 59.672 55.000 0.00 0.00 0.00 3.18
118 119 1.959710 TAACTGGCATGTGGGACCTA 58.040 50.000 0.00 0.00 0.00 3.08
119 120 1.072266 TTAACTGGCATGTGGGACCT 58.928 50.000 0.00 0.00 0.00 3.85
120 121 1.173913 GTTAACTGGCATGTGGGACC 58.826 55.000 0.00 0.00 0.00 4.46
121 122 0.802494 CGTTAACTGGCATGTGGGAC 59.198 55.000 3.71 0.00 0.00 4.46
122 123 0.322098 CCGTTAACTGGCATGTGGGA 60.322 55.000 3.71 0.00 0.00 4.37
123 124 0.608035 ACCGTTAACTGGCATGTGGG 60.608 55.000 14.00 3.31 0.00 4.61
124 125 0.802494 GACCGTTAACTGGCATGTGG 59.198 55.000 14.00 3.93 0.00 4.17
125 126 1.518325 TGACCGTTAACTGGCATGTG 58.482 50.000 0.78 0.00 0.00 3.21
126 127 2.264005 TTGACCGTTAACTGGCATGT 57.736 45.000 6.38 0.00 0.00 3.21
127 128 2.552315 AGTTTGACCGTTAACTGGCATG 59.448 45.455 6.38 0.00 33.55 4.06
128 129 2.858745 AGTTTGACCGTTAACTGGCAT 58.141 42.857 6.38 0.00 33.55 4.40
129 130 2.335316 AGTTTGACCGTTAACTGGCA 57.665 45.000 0.78 0.78 33.55 4.92
130 131 3.363280 CGTTAGTTTGACCGTTAACTGGC 60.363 47.826 14.00 6.20 36.16 4.85
131 132 3.184986 CCGTTAGTTTGACCGTTAACTGG 59.815 47.826 12.90 12.90 36.16 4.00
132 133 3.803778 ACCGTTAGTTTGACCGTTAACTG 59.196 43.478 3.71 0.00 36.16 3.16
133 134 4.051237 GACCGTTAGTTTGACCGTTAACT 58.949 43.478 3.71 0.00 38.16 2.24
134 135 3.801594 TGACCGTTAGTTTGACCGTTAAC 59.198 43.478 0.00 0.00 0.00 2.01
135 136 4.052159 TGACCGTTAGTTTGACCGTTAA 57.948 40.909 0.00 0.00 0.00 2.01
136 137 3.724508 TGACCGTTAGTTTGACCGTTA 57.275 42.857 0.00 0.00 0.00 3.18
137 138 2.600470 TGACCGTTAGTTTGACCGTT 57.400 45.000 0.00 0.00 0.00 4.44
138 139 2.600470 TTGACCGTTAGTTTGACCGT 57.400 45.000 0.00 0.00 0.00 4.83
139 140 5.594724 TTATTTGACCGTTAGTTTGACCG 57.405 39.130 0.00 0.00 0.00 4.79
140 141 8.938906 TCTAATTATTTGACCGTTAGTTTGACC 58.061 33.333 0.00 0.00 0.00 4.02
141 142 9.968743 CTCTAATTATTTGACCGTTAGTTTGAC 57.031 33.333 0.00 0.00 0.00 3.18
142 143 8.662141 GCTCTAATTATTTGACCGTTAGTTTGA 58.338 33.333 0.00 0.00 0.00 2.69
143 144 8.665685 AGCTCTAATTATTTGACCGTTAGTTTG 58.334 33.333 0.00 0.00 0.00 2.93
144 145 8.788325 AGCTCTAATTATTTGACCGTTAGTTT 57.212 30.769 0.00 0.00 0.00 2.66
145 146 8.258708 AGAGCTCTAATTATTTGACCGTTAGTT 58.741 33.333 16.50 0.00 0.00 2.24
146 147 7.783042 AGAGCTCTAATTATTTGACCGTTAGT 58.217 34.615 16.50 0.00 0.00 2.24
147 148 9.745880 TTAGAGCTCTAATTATTTGACCGTTAG 57.254 33.333 28.47 0.00 33.83 2.34
148 149 9.525409 GTTAGAGCTCTAATTATTTGACCGTTA 57.475 33.333 32.99 7.85 40.20 3.18
149 150 7.222224 CGTTAGAGCTCTAATTATTTGACCGTT 59.778 37.037 32.99 2.63 40.20 4.44
150 151 6.696148 CGTTAGAGCTCTAATTATTTGACCGT 59.304 38.462 32.99 3.01 40.20 4.83
151 152 6.345882 GCGTTAGAGCTCTAATTATTTGACCG 60.346 42.308 32.99 27.15 40.20 4.79
152 153 6.479001 TGCGTTAGAGCTCTAATTATTTGACC 59.521 38.462 32.99 18.45 40.20 4.02
153 154 7.464830 TGCGTTAGAGCTCTAATTATTTGAC 57.535 36.000 32.99 19.90 40.20 3.18
154 155 7.171508 CCATGCGTTAGAGCTCTAATTATTTGA 59.828 37.037 32.99 16.43 40.20 2.69
155 156 7.293745 CCATGCGTTAGAGCTCTAATTATTTG 58.706 38.462 32.99 24.82 40.20 2.32
156 157 6.428159 CCCATGCGTTAGAGCTCTAATTATTT 59.572 38.462 32.99 17.50 40.20 1.40
157 158 5.934625 CCCATGCGTTAGAGCTCTAATTATT 59.065 40.000 32.99 18.68 40.20 1.40
158 159 5.482908 CCCATGCGTTAGAGCTCTAATTAT 58.517 41.667 32.99 24.14 40.20 1.28
159 160 4.799586 GCCCATGCGTTAGAGCTCTAATTA 60.800 45.833 32.99 23.23 40.20 1.40
160 161 3.733337 CCCATGCGTTAGAGCTCTAATT 58.267 45.455 32.99 18.39 40.20 1.40
161 162 2.548920 GCCCATGCGTTAGAGCTCTAAT 60.549 50.000 32.99 18.23 40.20 1.73
162 163 1.202533 GCCCATGCGTTAGAGCTCTAA 60.203 52.381 28.47 28.47 38.13 2.10
163 164 0.389391 GCCCATGCGTTAGAGCTCTA 59.611 55.000 19.72 19.72 38.13 2.43
164 165 1.144936 GCCCATGCGTTAGAGCTCT 59.855 57.895 22.17 22.17 38.13 4.09
165 166 1.889573 GGCCCATGCGTTAGAGCTC 60.890 63.158 5.27 5.27 38.85 4.09
166 167 2.190578 GGCCCATGCGTTAGAGCT 59.809 61.111 0.00 0.00 38.85 4.09
167 168 2.902343 GGGCCCATGCGTTAGAGC 60.902 66.667 19.95 0.00 38.85 4.09
168 169 1.077787 TTGGGCCCATGCGTTAGAG 60.078 57.895 29.23 0.00 38.85 2.43
169 170 1.377987 GTTGGGCCCATGCGTTAGA 60.378 57.895 29.23 4.42 38.85 2.10
170 171 1.378514 AGTTGGGCCCATGCGTTAG 60.379 57.895 29.23 0.00 38.85 2.34
171 172 1.677300 CAGTTGGGCCCATGCGTTA 60.677 57.895 29.23 6.34 38.85 3.18
172 173 2.990967 CAGTTGGGCCCATGCGTT 60.991 61.111 29.23 6.75 38.85 4.84
173 174 4.284550 ACAGTTGGGCCCATGCGT 62.285 61.111 29.23 19.82 38.85 5.24
174 175 3.443045 GACAGTTGGGCCCATGCG 61.443 66.667 29.23 19.09 38.85 4.73
175 176 0.395586 TATGACAGTTGGGCCCATGC 60.396 55.000 29.23 21.77 0.00 4.06
176 177 2.142356 TTATGACAGTTGGGCCCATG 57.858 50.000 29.23 24.87 0.00 3.66
177 178 2.244510 TGATTATGACAGTTGGGCCCAT 59.755 45.455 29.23 11.27 0.00 4.00
178 179 1.638070 TGATTATGACAGTTGGGCCCA 59.362 47.619 24.45 24.45 0.00 5.36
179 180 2.024414 GTGATTATGACAGTTGGGCCC 58.976 52.381 17.59 17.59 0.00 5.80
180 181 1.670811 CGTGATTATGACAGTTGGGCC 59.329 52.381 0.00 0.00 0.00 5.80
181 182 2.627945 TCGTGATTATGACAGTTGGGC 58.372 47.619 0.00 0.00 0.00 5.36
182 183 6.918892 TTAATCGTGATTATGACAGTTGGG 57.081 37.500 3.32 0.00 33.71 4.12
183 184 8.397906 ACAATTAATCGTGATTATGACAGTTGG 58.602 33.333 9.18 0.00 33.71 3.77
194 195 9.825972 CAGAGTGTTTTACAATTAATCGTGATT 57.174 29.630 0.22 0.22 34.93 2.57
195 196 8.999431 ACAGAGTGTTTTACAATTAATCGTGAT 58.001 29.630 0.00 0.00 0.00 3.06
196 197 8.373048 ACAGAGTGTTTTACAATTAATCGTGA 57.627 30.769 0.00 0.00 0.00 4.35
197 198 8.279800 TGACAGAGTGTTTTACAATTAATCGTG 58.720 33.333 0.00 0.00 0.00 4.35
198 199 8.280497 GTGACAGAGTGTTTTACAATTAATCGT 58.720 33.333 0.00 0.00 0.00 3.73
199 200 7.744715 GGTGACAGAGTGTTTTACAATTAATCG 59.255 37.037 0.00 0.00 0.00 3.34
200 201 8.564574 TGGTGACAGAGTGTTTTACAATTAATC 58.435 33.333 0.00 0.00 35.01 1.75
201 202 8.458573 TGGTGACAGAGTGTTTTACAATTAAT 57.541 30.769 0.00 0.00 35.01 1.40
202 203 7.867305 TGGTGACAGAGTGTTTTACAATTAA 57.133 32.000 0.00 0.00 35.01 1.40
231 232 0.248702 GCGGTCGGCTGTTTCAAAAA 60.249 50.000 0.00 0.00 39.11 1.94
232 233 1.357334 GCGGTCGGCTGTTTCAAAA 59.643 52.632 0.00 0.00 39.11 2.44
233 234 2.548295 GGCGGTCGGCTGTTTCAAA 61.548 57.895 9.67 0.00 42.94 2.69
234 235 2.975799 GGCGGTCGGCTGTTTCAA 60.976 61.111 9.67 0.00 42.94 2.69
237 238 3.860930 AATGGGCGGTCGGCTGTTT 62.861 57.895 16.01 5.54 42.94 2.83
238 239 3.860930 AAATGGGCGGTCGGCTGTT 62.861 57.895 16.01 8.73 42.94 3.16
239 240 4.344865 AAATGGGCGGTCGGCTGT 62.345 61.111 16.01 3.25 42.94 4.40
240 241 3.814268 CAAATGGGCGGTCGGCTG 61.814 66.667 16.01 0.00 42.94 4.85
242 243 3.980442 TACCAAATGGGCGGTCGGC 62.980 63.158 8.44 8.44 42.05 5.54
243 244 1.817941 CTACCAAATGGGCGGTCGG 60.818 63.158 4.17 0.00 42.05 4.79
244 245 0.675522 AACTACCAAATGGGCGGTCG 60.676 55.000 4.17 0.00 42.05 4.79
245 246 2.406596 TAACTACCAAATGGGCGGTC 57.593 50.000 4.17 0.00 42.05 4.79
246 247 2.508300 AGATAACTACCAAATGGGCGGT 59.492 45.455 4.17 0.00 42.05 5.68
247 248 2.878406 CAGATAACTACCAAATGGGCGG 59.122 50.000 4.17 0.00 42.05 6.13
248 249 3.804036 TCAGATAACTACCAAATGGGCG 58.196 45.455 4.17 0.00 42.05 6.13
249 250 5.036117 TCTCAGATAACTACCAAATGGGC 57.964 43.478 4.17 0.00 42.05 5.36
250 251 7.938140 TTTTCTCAGATAACTACCAAATGGG 57.062 36.000 4.17 0.00 44.81 4.00
260 261 9.908152 CCGGTTTTTAATTTTTCTCAGATAACT 57.092 29.630 0.00 0.00 0.00 2.24
261 262 9.687210 ACCGGTTTTTAATTTTTCTCAGATAAC 57.313 29.630 0.00 0.00 0.00 1.89
264 265 9.074576 ACTACCGGTTTTTAATTTTTCTCAGAT 57.925 29.630 15.04 0.00 0.00 2.90
265 266 8.454570 ACTACCGGTTTTTAATTTTTCTCAGA 57.545 30.769 15.04 0.00 0.00 3.27
266 267 9.524106 AAACTACCGGTTTTTAATTTTTCTCAG 57.476 29.630 15.04 0.00 44.77 3.35
291 292 5.894964 ACTTTACAGGCTAGGGTTTCAAAAA 59.105 36.000 0.00 0.00 0.00 1.94
292 293 5.451354 ACTTTACAGGCTAGGGTTTCAAAA 58.549 37.500 0.00 0.00 0.00 2.44
293 294 5.056553 ACTTTACAGGCTAGGGTTTCAAA 57.943 39.130 0.00 0.00 0.00 2.69
294 295 4.717279 ACTTTACAGGCTAGGGTTTCAA 57.283 40.909 0.00 0.00 0.00 2.69
295 296 4.842380 ACTACTTTACAGGCTAGGGTTTCA 59.158 41.667 0.00 0.00 0.00 2.69
296 297 5.417754 ACTACTTTACAGGCTAGGGTTTC 57.582 43.478 0.00 0.00 0.00 2.78
297 298 6.021672 ACTACTACTTTACAGGCTAGGGTTT 58.978 40.000 0.00 0.00 0.00 3.27
298 299 5.587861 ACTACTACTTTACAGGCTAGGGTT 58.412 41.667 0.00 0.00 0.00 4.11
299 300 5.204131 ACTACTACTTTACAGGCTAGGGT 57.796 43.478 0.00 0.00 0.00 4.34
300 301 6.541934 AAACTACTACTTTACAGGCTAGGG 57.458 41.667 0.00 0.00 0.00 3.53
301 302 9.530633 CATAAAACTACTACTTTACAGGCTAGG 57.469 37.037 0.00 0.00 0.00 3.02
302 303 9.032420 GCATAAAACTACTACTTTACAGGCTAG 57.968 37.037 0.00 0.00 0.00 3.42
303 304 8.755977 AGCATAAAACTACTACTTTACAGGCTA 58.244 33.333 0.00 0.00 0.00 3.93
304 305 7.621796 AGCATAAAACTACTACTTTACAGGCT 58.378 34.615 0.00 0.00 0.00 4.58
305 306 7.845066 AGCATAAAACTACTACTTTACAGGC 57.155 36.000 0.00 0.00 0.00 4.85
315 316 9.674824 GCGAGAGTAAATAGCATAAAACTACTA 57.325 33.333 0.00 0.00 0.00 1.82
316 317 8.195436 TGCGAGAGTAAATAGCATAAAACTACT 58.805 33.333 0.00 0.00 32.43 2.57
317 318 8.267367 GTGCGAGAGTAAATAGCATAAAACTAC 58.733 37.037 0.00 0.00 40.11 2.73
318 319 7.437267 GGTGCGAGAGTAAATAGCATAAAACTA 59.563 37.037 0.00 0.00 40.11 2.24
319 320 6.258068 GGTGCGAGAGTAAATAGCATAAAACT 59.742 38.462 0.00 0.00 40.11 2.66
320 321 6.258068 AGGTGCGAGAGTAAATAGCATAAAAC 59.742 38.462 0.00 0.00 40.11 2.43
321 322 6.346096 AGGTGCGAGAGTAAATAGCATAAAA 58.654 36.000 0.00 0.00 40.11 1.52
322 323 5.914033 AGGTGCGAGAGTAAATAGCATAAA 58.086 37.500 0.00 0.00 40.11 1.40
323 324 5.531122 AGGTGCGAGAGTAAATAGCATAA 57.469 39.130 0.00 0.00 40.11 1.90
324 325 5.334646 CGTAGGTGCGAGAGTAAATAGCATA 60.335 44.000 0.00 0.00 40.11 3.14
325 326 4.556898 CGTAGGTGCGAGAGTAAATAGCAT 60.557 45.833 0.00 0.00 40.11 3.79
326 327 3.242969 CGTAGGTGCGAGAGTAAATAGCA 60.243 47.826 0.00 0.00 35.27 3.49
327 328 3.243002 ACGTAGGTGCGAGAGTAAATAGC 60.243 47.826 0.00 0.00 35.59 2.97
328 329 4.548991 ACGTAGGTGCGAGAGTAAATAG 57.451 45.455 0.00 0.00 35.59 1.73
329 330 5.118990 AGTACGTAGGTGCGAGAGTAAATA 58.881 41.667 0.00 0.00 33.56 1.40
330 331 3.944015 AGTACGTAGGTGCGAGAGTAAAT 59.056 43.478 0.00 0.00 33.56 1.40
331 332 3.338249 AGTACGTAGGTGCGAGAGTAAA 58.662 45.455 0.00 0.00 33.56 2.01
332 333 2.977914 AGTACGTAGGTGCGAGAGTAA 58.022 47.619 0.00 0.00 33.56 2.24
333 334 2.680312 AGTACGTAGGTGCGAGAGTA 57.320 50.000 0.00 0.00 33.56 2.59
334 335 2.093764 ACTAGTACGTAGGTGCGAGAGT 60.094 50.000 17.69 10.56 35.61 3.24
335 336 2.548875 ACTAGTACGTAGGTGCGAGAG 58.451 52.381 17.69 10.04 35.61 3.20
336 337 2.680312 ACTAGTACGTAGGTGCGAGA 57.320 50.000 17.69 0.00 35.61 4.04
337 338 3.244814 CACTACTAGTACGTAGGTGCGAG 59.755 52.174 11.12 11.12 40.87 5.03
338 339 3.190079 CACTACTAGTACGTAGGTGCGA 58.810 50.000 11.24 0.00 40.87 5.10
339 340 2.932614 ACACTACTAGTACGTAGGTGCG 59.067 50.000 15.48 0.24 40.87 5.34
340 341 3.686726 ACACACTACTAGTACGTAGGTGC 59.313 47.826 15.48 0.00 40.87 5.01
341 342 6.968131 TTACACACTACTAGTACGTAGGTG 57.032 41.667 14.46 14.46 40.87 4.00
342 343 7.065085 CACATTACACACTACTAGTACGTAGGT 59.935 40.741 11.24 6.13 40.87 3.08
343 344 7.278646 TCACATTACACACTACTAGTACGTAGG 59.721 40.741 11.24 0.00 40.87 3.18
344 345 8.189709 TCACATTACACACTACTAGTACGTAG 57.810 38.462 0.00 6.43 41.98 3.51
345 346 8.443160 GTTCACATTACACACTACTAGTACGTA 58.557 37.037 0.00 0.00 0.00 3.57
346 347 7.301054 GTTCACATTACACACTACTAGTACGT 58.699 38.462 0.00 0.00 0.00 3.57
347 348 6.463890 CGTTCACATTACACACTACTAGTACG 59.536 42.308 0.00 0.00 0.00 3.67
348 349 6.250104 GCGTTCACATTACACACTACTAGTAC 59.750 42.308 0.00 0.00 0.00 2.73
349 350 6.317088 GCGTTCACATTACACACTACTAGTA 58.683 40.000 1.89 1.89 0.00 1.82
350 351 5.159209 GCGTTCACATTACACACTACTAGT 58.841 41.667 0.00 0.00 0.00 2.57
354 355 2.471749 GCGCGTTCACATTACACACTAC 60.472 50.000 8.43 0.00 0.00 2.73
357 358 0.452122 GGCGCGTTCACATTACACAC 60.452 55.000 8.43 0.00 0.00 3.82
504 3019 2.032414 TATTGCGAGTGATCGTAGCG 57.968 50.000 0.00 0.00 35.26 4.26
553 6397 0.248949 GAACCTGGAGACGTATCGCC 60.249 60.000 3.77 0.00 44.73 5.54
573 9060 3.374058 CGGTAATGCAAGGTTTCTCGAAT 59.626 43.478 0.00 0.00 0.00 3.34
590 9078 1.948611 GCTTGGATGGCAAGTCGGTAA 60.949 52.381 0.00 0.00 32.59 2.85
883 9432 2.095372 GGTTAAATAGACGGCTGTGTGC 59.905 50.000 0.80 0.00 41.94 4.57
927 9479 0.311165 CGCCGTCGAGACTGGATATT 59.689 55.000 14.84 0.00 38.10 1.28
950 9502 0.704664 GGGGAGAGGTTGGTGGATTT 59.295 55.000 0.00 0.00 0.00 2.17
1277 9909 0.246086 AGCACAGAGTAGCAGCAGAC 59.754 55.000 0.00 0.00 0.00 3.51
1349 9982 3.000872 CGACGCGACGGAAATTTATAACA 60.001 43.478 22.72 0.00 0.00 2.41
1350 9983 3.515692 CGACGCGACGGAAATTTATAAC 58.484 45.455 22.72 0.00 0.00 1.89
1351 9984 3.821937 CGACGCGACGGAAATTTATAA 57.178 42.857 22.72 0.00 0.00 0.98
1419 10075 4.541705 TCAGAAACTAGGGATGGAGAGAG 58.458 47.826 0.00 0.00 0.00 3.20
1441 10097 1.534235 ACGGACCCAGCTCAAGACT 60.534 57.895 0.00 0.00 0.00 3.24
1462 10118 0.674581 CAGCGGCAAGAAGATCACCA 60.675 55.000 1.45 0.00 0.00 4.17
1477 10133 1.380403 TTCACCACCAACAACCAGCG 61.380 55.000 0.00 0.00 0.00 5.18
1482 10146 3.003378 GCTAAGACTTCACCACCAACAAC 59.997 47.826 0.00 0.00 0.00 3.32
1484 10148 2.438021 AGCTAAGACTTCACCACCAACA 59.562 45.455 0.00 0.00 0.00 3.33
1501 10165 0.178990 TCCCGAGATGCTAGCAGCTA 60.179 55.000 33.76 16.96 43.23 3.32
1530 10196 2.621526 CGGGAGGTTGCACTTTAAAACT 59.378 45.455 0.00 0.00 0.00 2.66
1582 10553 1.658686 ATCGACCAGACCTGCTCGAC 61.659 60.000 16.64 0.00 46.33 4.20
1709 10700 0.593128 CACAAGCAAGGAAAGACGGG 59.407 55.000 0.00 0.00 0.00 5.28
1715 10706 1.032014 GGAGCACACAAGCAAGGAAA 58.968 50.000 0.00 0.00 36.85 3.13
1892 10927 3.943381 TCATCATGCAGAGGTTAAGCAAG 59.057 43.478 7.52 0.00 42.15 4.01
1924 10959 4.956700 TGACAGGACATAGAAAGGGACTAG 59.043 45.833 0.00 0.00 38.49 2.57
1976 11011 0.721718 GTCGTCCCTCAATCAAAGCG 59.278 55.000 0.00 0.00 0.00 4.68
2097 11134 2.047655 CCTGAGCGCCAACCGTAA 60.048 61.111 2.29 0.00 39.71 3.18
2101 11138 0.321298 TTAAGACCTGAGCGCCAACC 60.321 55.000 2.29 0.00 0.00 3.77
2113 11150 3.711704 TCTGTGGGAGATGGATTAAGACC 59.288 47.826 0.00 0.00 0.00 3.85
2137 11174 1.940613 GACTTGACTTGGACAAGCGTT 59.059 47.619 11.73 0.00 45.66 4.84
2138 11175 1.139058 AGACTTGACTTGGACAAGCGT 59.861 47.619 11.73 4.66 45.66 5.07
2186 11224 0.399806 AGGGGCTTTTGGGCTTTTGA 60.400 50.000 0.00 0.00 40.65 2.69
2195 11241 1.703411 TCAAACCAGAGGGGCTTTTG 58.297 50.000 0.00 0.00 42.05 2.44
2196 11242 2.039418 GTTCAAACCAGAGGGGCTTTT 58.961 47.619 0.00 0.00 42.05 2.27
2197 11243 1.704641 GTTCAAACCAGAGGGGCTTT 58.295 50.000 0.00 0.00 42.05 3.51
2198 11244 0.537371 CGTTCAAACCAGAGGGGCTT 60.537 55.000 0.00 0.00 42.05 4.35
2199 11245 1.073199 CGTTCAAACCAGAGGGGCT 59.927 57.895 0.00 0.00 42.05 5.19
2200 11246 2.626780 GCGTTCAAACCAGAGGGGC 61.627 63.158 0.00 0.00 42.05 5.80
2201 11247 1.971695 GGCGTTCAAACCAGAGGGG 60.972 63.158 0.00 0.00 44.81 4.79
2202 11248 0.955919 GAGGCGTTCAAACCAGAGGG 60.956 60.000 0.00 0.00 41.29 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.